Query 025307
Match_columns 255
No_of_seqs 110 out of 224
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 04:29:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025307.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025307hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04080 Per1: Per1-like ; In 100.0 6.3E-97 1E-101 672.6 22.0 233 1-244 23-267 (267)
2 KOG2970 Predicted membrane pro 100.0 1.1E-92 2.5E-97 645.8 18.4 243 1-252 73-319 (319)
3 COG5237 PER1 Predicted membran 100.0 1E-74 2.2E-79 518.6 15.3 233 5-248 74-315 (319)
4 PF03006 HlyIII: Haemolysin-II 97.6 0.0024 5.2E-08 55.3 14.0 154 78-233 44-219 (222)
5 PF05875 Ceramidase: Ceramidas 97.5 0.011 2.4E-07 53.5 17.3 184 33-241 26-236 (262)
6 PF12036 DUF3522: Protein of u 97.3 0.0052 1.1E-07 53.7 12.3 92 82-181 34-137 (186)
7 TIGR01065 hlyIII channel prote 96.2 0.3 6.6E-06 42.9 15.3 151 77-237 38-198 (204)
8 PRK15087 hemolysin; Provisiona 96.0 0.39 8.6E-06 42.9 14.9 151 78-238 54-211 (219)
9 KOG0748 Predicted membrane pro 86.4 29 0.00062 32.5 16.8 154 92-248 98-275 (286)
10 PF13965 SID-1_RNA_chan: dsRNA 67.5 53 0.0012 33.8 10.5 32 215-246 528-562 (570)
11 COG1272 Predicted membrane pro 65.3 1.1E+02 0.0024 27.9 12.5 42 79-120 59-105 (226)
12 PF10277 Frag1: Frag1/DRAM/Sfk 51.5 1.5E+02 0.0032 25.0 13.1 90 22-119 41-132 (215)
13 PF10709 DUF2511: Protein of u 34.3 17 0.00036 28.5 0.5 14 16-29 5-18 (87)
14 PF15174 PRNT: Prion-related p 24.2 30 0.00066 24.2 0.4 9 219-227 26-34 (51)
15 KOG3402 Predicted membrane pro 23.0 2.9E+02 0.0063 22.1 5.7 43 81-123 28-70 (101)
16 PF00599 Flu_M2: Influenza Mat 20.8 92 0.002 24.6 2.5 16 165-181 29-44 (97)
17 PF08333 DUF1725: Protein of u 20.2 26 0.00056 20.4 -0.5 6 17-22 2-7 (20)
No 1
>PF04080 Per1: Per1-like ; InterPro: IPR007217 A member of this family has been implemented in protein processing in the endoplasmic reticulum [].
Probab=100.00 E-value=6.3e-97 Score=672.60 Aligned_cols=233 Identities=45% Similarity=0.786 Sum_probs=212.5
Q ss_pred CchhhHHHHHcCCCCccccccccceeeccccccHHHHHHHHhHHHHHHhhhHHHHHHHHhhCCCCCCCccchhhhhHHHH
Q 025307 1 MLAREGEREKVGDKPVKYHGKWPFRRVYGIQVEPVAVALSALNLSIQFHGWMSFFILLYYKLPLRPDKKTYYEYTGLWHI 80 (255)
Q Consensus 1 ~~~~~~~R~~~g~~i~QFhGKWPF~Rv~GiQ~Ep~SvlFSllNl~~h~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (255)
|...|++|+++|+|++||||||||+|++||| ||+||+||++|+++|+.|+++++ ++.+.+.+.++ .|++
T Consensus 23 m~~~t~~r~~~g~~i~QfhGKWPF~Rv~GiQ-Ep~Sv~FSllNl~~h~~~~~~~~----~~~~~~~p~~~------~~~~ 91 (267)
T PF04080_consen 23 MWIITEERIKNGEPIVQFHGKWPFKRVLGIQ-EPASVLFSLLNLLAHYRGLRKFR----RQVPRNSPMYP------YYII 91 (267)
T ss_pred cHHHHHHHHHcCCCcccccccccchhhhcCc-hHHHHHHHHHhHHHHHHHHHHHH----HhccCCCCCcC------eeeh
Confidence 6789999999999999999999999999999 99999999999999999998854 33443333332 2578
Q ss_pred HHHHHHHHHHHHHhhhccCCCcchhhhHHhhHHHHHHHHHHHHHHhccCC-hhHHHHHHHHHHHHHHHHHhhhccccccc
Q 025307 81 YGILAMNSWFWSAVFHSRDVELTEKLDCSSAVALLGFNFILAILRAFSVR-DEAARVMVAAPLIAFVTTHILYLNFYKLD 159 (255)
Q Consensus 81 ~~~i~~~aW~~StvFH~RD~~~TE~lDYf~A~~~vl~~l~~~~~R~f~l~-~~~~r~~~~~~~~~~~~~Hv~yL~~~~fd 159 (255)
++++|||||+||||||+||+++|||||||||+++|++|++++++|+++++ ++..+.+++++|+++|++||+||++.|||
T Consensus 92 ~~~v~~naW~wStvFH~RD~~~TE~lDYf~A~a~vl~~l~~~~~R~f~l~~~~~~~~~~~~~~~~~~~~Hv~yL~~~~fd 171 (267)
T PF04080_consen 92 YAIVSMNAWIWSTVFHTRDTPLTEKLDYFSAGATVLFGLYAAIVRIFRLYRRRRLRRIFTALCIAFYIAHVSYLSFVRFD 171 (267)
T ss_pred HHHHHHHHHHHHHHHHHhcccHhhHhHHhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHccccccc
Confidence 99999999999999999999999999999999999999999999999995 44567789999999999999999999999
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHhhhcCCcc---------chhH--HHHHHHHHHHHHHhhcCCCCcccchhhhhhhcCc
Q 025307 160 HGLNMKVCLAMGVAQLLIWAIWAGVTRHPSR---------WKLW--LVVVGEGLAMLLQIYDFPPYRGFVDAHALYHAAN 228 (255)
Q Consensus 160 Y~YNM~~nv~~G~~~~~lW~~~~~~~~~~~~---------~~~~--~~v~~~~~a~~LEl~DFpP~~~~iDAHaLWHl~T 228 (255)
|||||++||++|++|+++|+.||+.++++.. ++++ ++++++.+||+|||+||||+++++|||||||++|
T Consensus 172 Y~YNM~~nv~~G~~~~~lw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~~~lam~LEl~DFpP~~~~lDAHALWHl~T 251 (267)
T PF04080_consen 172 YGYNMKANVAVGLLQNILWLLWSFRNYRRYPSVKKSYSKRWKLWPILFVVLTILAMSLELFDFPPIFWLLDAHALWHLAT 251 (267)
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhccCcccccchHHHHHHHHH
Confidence 9999999999999999999999998765433 6777 7788999999999999999999999999999999
Q ss_pred chhHHHHHHHHHhhhh
Q 025307 229 IPLTYLWWSFIRDDSE 244 (255)
Q Consensus 229 ip~~~~wy~Fli~D~~ 244 (255)
|||+++||+|+++|+|
T Consensus 252 ip~~~~wy~Fl~~D~~ 267 (267)
T PF04080_consen 252 IPPTYLWYDFLIDDAE 267 (267)
T ss_pred hhHHHHHHHHHHHhcC
Confidence 9999999999999986
No 2
>KOG2970 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=1.1e-92 Score=645.83 Aligned_cols=243 Identities=48% Similarity=0.888 Sum_probs=227.2
Q ss_pred CchhhHHHHHcCCCCccccccccceeeccccccHHHHHHHHhHHHHHHhhhHHHHHHHHhhCCCCCCCccchhhhhHHHH
Q 025307 1 MLAREGEREKVGDKPVKYHGKWPFRRVYGIQVEPVAVALSALNLSIQFHGWMSFFILLYYKLPLRPDKKTYYEYTGLWHI 80 (255)
Q Consensus 1 ~~~~~~~R~~~g~~i~QFhGKWPF~Rv~GiQ~Ep~SvlFSllNl~~h~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (255)
|.++|++|+++|+|++||||||||+||+||| |||||+||++|+++|++|+.+ +|.+.+++++.+|+ ++|++
T Consensus 73 m~~t~~~~~~~~~pi~qfhGKWpFlrvlGiQ-Ep~SviFS~lNl~~h~~g~~~------~r~~~~~~~~~r~~--~l~~I 143 (319)
T KOG2970|consen 73 MWTTESEFIKRGGPIPQFHGKWPFLRVLGIQ-EPFSVIFSFLNLITHYKGLVK------FRRPKKPNRPTRYE--RLWLI 143 (319)
T ss_pred eeeehhhHHhcCCccccccCCcchhhhhhcc-chHHHHHHHHHHHHHHHHHhh------eecccCCCCcchhc--cchhh
Confidence 7889999999999999999999999999999 999999999999999999654 66777788888887 79999
Q ss_pred HHHHHHHHHHHHHhhhccCCCcchhhhHHhhHHHHHHHHHHHHHHhccCChh-HHHHHHHHHHHHHHHHHhhhccccccc
Q 025307 81 YGILAMNSWFWSAVFHSRDVELTEKLDCSSAVALLGFNFILAILRAFSVRDE-AARVMVAAPLIAFVTTHILYLNFYKLD 159 (255)
Q Consensus 81 ~~~i~~~aW~~StvFH~RD~~~TE~lDYf~A~~~vl~~l~~~~~R~f~l~~~-~~r~~~~~~~~~~~~~Hv~yL~~~~fd 159 (255)
|+++|||||+||+|||+||+++|||||||+|+++|+||+|++++|.++++.. ..|.+++++++++|+.|+.||++++||
T Consensus 144 ~a~i~mnawiwSsvFH~rD~~lTEklDYf~A~~~vlf~ly~a~ir~~~i~~~~~~~~~ita~fla~ya~Hi~yls~~~fd 223 (319)
T KOG2970|consen 144 YAYIGMNAWIWSSVFHIRDVPLTEKLDYFSAYLTVLFGLYVALIRMLSIQSLPALRGMITAIFLAFYANHILYLSFYNFD 223 (319)
T ss_pred HHHHHHHHHHHHHhhhhcCCchHhhhhHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHhheecc
Confidence 9999999999999999999999999999999999999999999999999876 678899999999999999999999999
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHhh-hcCCccchhHHH--HHHHHHHHHHHhhcCCCCcccchhhhhhhcCcchhHHHHH
Q 025307 160 HGLNMKVCLAMGVAQLLIWAIWAGV-TRHPSRWKLWLV--VVGEGLAMLLQIYDFPPYRGFVDAHALYHAANIPLTYLWW 236 (255)
Q Consensus 160 Y~YNM~~nv~~G~~~~~lW~~~~~~-~~~~~~~~~~~~--v~~~~~a~~LEl~DFpP~~~~iDAHaLWHl~Tip~~~~wy 236 (255)
|||||++|+++|++|+++|..|++. +++|+.++++++ +.++.+||+||++||||+.|++|||||||++|||++++||
T Consensus 224 YgyNm~~~v~~g~iq~vlw~~~~~~~~~~~s~~~i~~~~i~~~~~LA~sLEi~DFpPy~~~iDAHALWHlaTIplt~~~~ 303 (319)
T KOG2970|consen 224 YGYNMIVCVAIGVIQLVLWLVWSFKKRNLPSFWRIWPILIVIFFFLAMSLEIFDFPPYAWLIDAHALWHLATIPLTILWY 303 (319)
T ss_pred cccceeeehhhHHHHHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHHHHHhhcCCchhhhcchHHHHHhhcCccHHHHH
Confidence 9999999999999999999999954 578999997754 4456999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHhhhc
Q 025307 237 SFIRDDSEFRTTALLK 252 (255)
Q Consensus 237 ~Fli~D~~~~~~~~~~ 252 (255)
+|+.+|+++.+++.+|
T Consensus 304 ~Fv~~d~~~~t~~~l~ 319 (319)
T KOG2970|consen 304 DFVSDDYDFATGVRLK 319 (319)
T ss_pred HHhhchhhhhcceecC
Confidence 9999999999986654
No 3
>COG5237 PER1 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=1e-74 Score=518.64 Aligned_cols=233 Identities=30% Similarity=0.398 Sum_probs=204.2
Q ss_pred hHHHHHcCCCCccccccccceeeccccccHHHHHHHHhHHHHHHhhhHHHHHHHHhhCCC-CCCCccchhhhhHHHHHHH
Q 025307 5 EGEREKVGDKPVKYHGKWPFRRVYGIQVEPVAVALSALNLSIQFHGWMSFFILLYYKLPL-RPDKKTYYEYTGLWHIYGI 83 (255)
Q Consensus 5 ~~~R~~~g~~i~QFhGKWPF~Rv~GiQ~Ep~SvlFSllNl~~h~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (255)
|+-|.++++|+.||||||||.||+||| |++|++||++|+++||.|+.++. ++.+. .+.++.++. .+++
T Consensus 74 ~~~~~~~n~~~~q~hGkW~F~rVlG~q-EfFS~~FS~~Nfi~hy~gfh~m~----r~i~~e~~~~R~~~l------~wv~ 142 (319)
T COG5237 74 LKFTNSGNIKIYQRHGKWGFQRVLGMQ-EFFSALFSFMNFITHYIGFHRML----RKILRETRLGRLYYL------QWVY 142 (319)
T ss_pred HHHhccCCchhhhhcCccceeeehhHH-HHHHHHHHHHHHHHHHHHHHHHH----HHhcccccccceEEe------eHHH
Confidence 566788899999999999999999999 99999999999999999998742 34433 333444443 4579
Q ss_pred HHHHHHHHHHhhhccCCCcchhhhHHhhHHHHHHHHHHHHHHhccCCh----hHHHHHHHHHHHHHHHHHhhhccccccc
Q 025307 84 LAMNSWFWSAVFHSRDVELTEKLDCSSAVALLGFNFILAILRAFSVRD----EAARVMVAAPLIAFVTTHILYLNFYKLD 159 (255)
Q Consensus 84 i~~~aW~~StvFH~RD~~~TE~lDYf~A~~~vl~~l~~~~~R~f~l~~----~~~r~~~~~~~~~~~~~Hv~yL~~~~fd 159 (255)
+||+||+||+|||+||+++|||+|||+|+++|++|+|++.+|..++.. +..|...+++++++|+.||.||++++||
T Consensus 143 igmlAwi~SsvFHird~~iTeklDYF~AgltVLfGfy~~lvrm~~~~~~p~~K~~~~~~~aifia~fa~Hi~rls~i~fd 222 (319)
T COG5237 143 IGMLAWISSSVFHIRDNTITEKLDYFLAGLTVLFGFYMALVRMILIVSPPIEKATRGPLQAIFIAFFAYHIHRLSNIEFD 222 (319)
T ss_pred HHHHHHHHHhheeeeccchhhhHHHHHhhHHHHHHHHHHHHHHHHhhcCchHHHHHhHHHHHHHHHHHHHHHHHhhccce
Confidence 999999999999999999999999999999999999999999988654 3456677899999999999999999999
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHhhhcCC--ccchhH--HHHHHHHHHHHHHhhcCCCCcccchhhhhhhcCcchhHHHH
Q 025307 160 HGLNMKVCLAMGVAQLLIWAIWAGVTRHP--SRWKLW--LVVVGEGLAMLLQIYDFPPYRGFVDAHALYHAANIPLTYLW 235 (255)
Q Consensus 160 Y~YNM~~nv~~G~~~~~lW~~~~~~~~~~--~~~~~~--~~v~~~~~a~~LEl~DFpP~~~~iDAHaLWHl~Tip~~~~w 235 (255)
|+|||++|+++|+.|+++|...+..+++. ..+|-+ .+|..+.+|+||||+||||+-++||||||||++|+|++.+.
T Consensus 223 Y~YNm~~n~aigv~q~iL~~~~s~~ny~~~g~~~kr~p~~~v~~~~lA~slElfDf~pya~lIDaHAlWHL~t~~~t~~l 302 (319)
T COG5237 223 YVYNMISNCAIGVTQTILSHLVSFLNYRKLGHTFKRIPLFFVFFFFLAGSLELFDFPPYAYLIDAHALWHLITCISTPFL 302 (319)
T ss_pred eeehhhhcchHHHHHHHHHHHHHHhhhHhhhhhhhhhhHHHHHHHHHhhhhhhhccCcHHHHhhHHHHhHhhhccchHHH
Confidence 99999999999999999999999887654 223433 45677889999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHH
Q 025307 236 WSFIRDDSEFRTT 248 (255)
Q Consensus 236 y~Fli~D~~~~~~ 248 (255)
|+|...|+.|.-+
T Consensus 303 y~F~~~d~~y~~n 315 (319)
T COG5237 303 YLFWSGDVYYHGN 315 (319)
T ss_pred HHhhhcceeeecc
Confidence 9999999988765
No 4
>PF03006 HlyIII: Haemolysin-III related; InterPro: IPR004254 Members of this family are integral membrane proteins. This family includes proteins that are hemolysin-III homologs.; GO: 0016021 integral to membrane
Probab=97.60 E-value=0.0024 Score=55.29 Aligned_cols=154 Identities=18% Similarity=0.195 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHHhhhc-------cCCCcchhhhHHhhHHHHHHHHHHHHHHhccCChhHHHHHHHHH-HHHHHHHH
Q 025307 78 WHIYGILAMNSWFWSAVFHS-------RDVELTEKLDCSSAVALLGFNFILAILRAFSVRDEAARVMVAAP-LIAFVTTH 149 (255)
Q Consensus 78 ~~~~~~i~~~aW~~StvFH~-------RD~~~TE~lDYf~A~~~vl~~l~~~~~R~f~l~~~~~r~~~~~~-~~~~~~~H 149 (255)
..+|....+...+.||++|+ +.-..-.|+||.+-...+..+..-...-.+.-+........... ++++....
T Consensus 44 ~~~~~~~~~~~~~~St~yH~f~~~s~~~~~~~~~~lD~~gI~l~i~gs~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 123 (222)
T PF03006_consen 44 FLIYLLSAILCFLCSTLYHLFSCHSEGKVYHIFLRLDYAGIFLLIAGSYTPFIYYGFYCHPWLGWFYLAFIWILALIGIV 123 (222)
T ss_pred HHHHHHHHHHHHHhHHHhhCCCcCCcHHHHHHHHhcchhhhhHhHhhhhhhHHHhhccccchHHHHHHHHHHHHHHHhHH
Confidence 35677777778999999999 34566779999997666665544333333311222222111111 11111111
Q ss_pred hhhccccccc----ccchhhhHHHHHHHHHHHHHHHHhhh---cCCc-cchhHHHHHHHHHHHHHHhhcCCCCc--ccc-
Q 025307 150 ILYLNFYKLD----HGLNMKVCLAMGVAQLLIWAIWAGVT---RHPS-RWKLWLVVVGEGLAMLLQIYDFPPYR--GFV- 218 (255)
Q Consensus 150 v~yL~~~~fd----Y~YNM~~nv~~G~~~~~lW~~~~~~~---~~~~-~~~~~~~v~~~~~a~~LEl~DFpP~~--~~i- 218 (255)
..+ ...++ ..--+.+-++.|....+...-..... ..|. ......-.++-.+|+.+-..++|.-+ +-+
T Consensus 124 -~~~-~~~~~~~~~~~~r~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~G~~fy~~~~PEr~~pg~fD 201 (222)
T PF03006_consen 124 -LSL-FPCFSSPRFRWLRTIFFLLLGWSGIIPIFHRIFFLGGWGSPDPLWLLILGGVLYLLGAVFYATRIPERWFPGKFD 201 (222)
T ss_pred -hhc-chhhcCCccceeeehHhHHHHHHHHhhhHHHHHHhccccchHHHHHHHHHHHHHHHhHHHhhhccccccCCCCcC
Confidence 111 11211 22223334445544443333211111 1111 11112233455678889999977622 234
Q ss_pred ---hhhhhhhcCcchhHH
Q 025307 219 ---DAHALYHAANIPLTY 233 (255)
Q Consensus 219 ---DAHaLWHl~Tip~~~ 233 (255)
-+|.+||+..+--+.
T Consensus 202 ~~g~sHqi~Hi~v~~~~~ 219 (222)
T PF03006_consen 202 IWGHSHQIWHIFVVLAAL 219 (222)
T ss_pred CCCccHHHHHHHHHHHHH
Confidence 499999998765444
No 5
>PF05875 Ceramidase: Ceramidase; InterPro: IPR008901 This entry consists of several ceramidases. Ceramidases are enzymes involved in regulating cellular levels of ceramides, sphingoid bases, and their phosphates.; GO: 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0006672 ceramide metabolic process, 0016021 integral to membrane
Probab=97.48 E-value=0.011 Score=53.54 Aligned_cols=184 Identities=15% Similarity=0.077 Sum_probs=94.4
Q ss_pred cHHHHHHHHhHHHHHHhhhHHHHHHHHhhCCCCCCCccchhhhhHHHHHHHHHHHHHHHHHhhhccCCCcchhhhHHhhH
Q 025307 33 EPVAVALSALNLSIQFHGWMSFFILLYYKLPLRPDKKTYYEYTGLWHIYGILAMNSWFWSAVFHSRDVELTEKLDCSSAV 112 (255)
Q Consensus 33 Ep~SvlFSllNl~~h~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~aW~~StvFH~RD~~~TE~lDYf~A~ 112 (255)
||.=++-++.=+++-..|+.+. ++ .+.+. ... ..+..+..++ +-|+.||+-=...|+-+|=..-.
T Consensus 26 Ef~NtlSNl~fi~~al~gl~~~-----~~--~~~~~-~~~------l~~~~l~~VG-iGS~~FHaTl~~~~ql~DelPMl 90 (262)
T PF05875_consen 26 EFWNTLSNLAFIVAALYGLYLA-----RR--RGLER-RFA------LLYLGLALVG-IGSFLFHATLSYWTQLLDELPML 90 (262)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-----hh--ccccc-hhH------HHHHHHHHHH-HhHHHHHhChhhhHHHhhhhhHH
Confidence 9998877777667666665542 11 11111 111 2233344444 89999999888999999976654
Q ss_pred HHHHHHHHHHHHHhccCChhHHHHHHHHHH----HHHHHHHhhhcccccccccchhhhHHHHHHHHHHHHHHHHh--hh-
Q 025307 113 ALLGFNFILAILRAFSVRDEAARVMVAAPL----IAFVTTHILYLNFYKLDHGLNMKVCLAMGVAQLLIWAIWAG--VT- 185 (255)
Q Consensus 113 ~~vl~~l~~~~~R~f~l~~~~~r~~~~~~~----~~~~~~Hv~yL~~~~fdY~YNM~~nv~~G~~~~~lW~~~~~--~~- 185 (255)
-..+..++....+.. .++..|...+..+ ++..+.|...= +. ..| ++.+|.....+.+.-.. ..
T Consensus 91 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~L~~~~~~~t~~~~~~~---~p--~~~---~~~f~~~~~~~~~~~~~~~~~~ 160 (262)
T PF05875_consen 91 WATLLFLYIVLTRRY--SSPRYRLALPLLLFIYAVVVTVLYFVLD---NP--VFH---QIAFASLVLLVILRSIYLIRRR 160 (262)
T ss_pred HHHHHHHHHHhcccc--cCchhhHHHHHHHHHHHHHHHHHHhhhc---cc--hhh---hhhHHHHHHHHHHHHHHHHHHh
Confidence 333333333333322 1111122222221 22223333311 11 111 23344443333332111 11
Q ss_pred -----cCCccchhH-HHHHHHHHHHHHHhhcC--------------CCCcccchhhhhhhcCcchhHHHHHHHHHh
Q 025307 186 -----RHPSRWKLW-LVVVGEGLAMLLQIYDF--------------PPYRGFVDAHALYHAANIPLTYLWWSFIRD 241 (255)
Q Consensus 186 -----~~~~~~~~~-~~v~~~~~a~~LEl~DF--------------pP~~~~iDAHaLWHl~Tip~~~~wy~Fli~ 241 (255)
+++...++. .-++...+|..+-..|- .|+..++--|++||+.|---+++...+.+-
T Consensus 161 ~~~~~~~~~~~~l~~~~~~~f~~a~~~W~iD~~~C~~~~~~~~~~g~p~~~~le~H~~WHilt~ig~Y~~~~~~~~ 236 (262)
T PF05875_consen 161 VRDACRRRRARRLLLFGLALFLVAFFFWNIDRIFCSSLRAIRFPYGLPLGFLLELHAWWHILTGIGAYLLIVFVAY 236 (262)
T ss_pred cCchhhchHHHHHHHHHHHHHHHHHHHHHhHHHHHccccccccccCCcchhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222332 33445567788888776 355566789999999998888877776544
No 6
>PF12036 DUF3522: Protein of unknown function (DUF3522); InterPro: IPR021910 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 220 to 787 amino acids in length.
Probab=97.29 E-value=0.0052 Score=53.73 Aligned_cols=92 Identities=14% Similarity=0.151 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhhhccC-CC----cc----hhhhHHhhHHHHHHHHHHHHHHhccCChhHHH--HHHHHHHHHHHHHHh
Q 025307 82 GILAMNSWFWSAVFHSRD-VE----LT----EKLDCSSAVALLGFNFILAILRAFSVRDEAAR--VMVAAPLIAFVTTHI 150 (255)
Q Consensus 82 ~~i~~~aW~~StvFH~RD-~~----~T----E~lDYf~A~~~vl~~l~~~~~R~f~l~~~~~r--~~~~~~~~~~~~~Hv 150 (255)
+.++..+=++|+.+|+.| .+ ++ ++|||......++. .....+..-++++...+ ..+++.++++..
T Consensus 34 a~v~~~tm~~S~~YHacd~~~~~~~lc~~~~~~L~~~~~~~s~~~-~~vtl~~~a~~~~~~~~~l~~~~~~~~ai~~--- 109 (186)
T PF12036_consen 34 AFVYTFTMFFSTFYHACDSGPGEIFLCIMDWHRLQNIDFIGSFLS-IWVTLCAMARLDEPLKSVLHYFGALVIAIFQ--- 109 (186)
T ss_pred HHHHHHHHHHHHhcccccCCCCceEEeechHHHHHHHHHHHHHHH-HHHHHHHhccCCHHHHHHHHHHHHHHHHHHH---
Confidence 788889999999999999 55 44 47888776543332 22223333333332222 233333333332
Q ss_pred hhcccccccccchhhhHHHHHHHH-HHHHHHH
Q 025307 151 LYLNFYKLDHGLNMKVCLAMGVAQ-LLIWAIW 181 (255)
Q Consensus 151 ~yL~~~~fdY~YNM~~nv~~G~~~-~~lW~~~ 181 (255)
. ..+||+. |+..-+++|++- .+-|+..
T Consensus 110 -~--~~~~~~~-~~~~Pi~~~~~i~~~~w~~r 137 (186)
T PF12036_consen 110 -Q--KDRWSLW-NTIGPILIGLLILLVSWLYR 137 (186)
T ss_pred -h--hCcccch-hhHHHHHHHHHHHHHHHhee
Confidence 2 2478855 455555555533 3344433
No 7
>TIGR01065 hlyIII channel protein, hemolysin III family. This family includes proteins from pathogenic and non-pathogenic bacteria, Homo sapiens and Drosophila. In Bacillus cereus, a pathogen, it has been show to function as a channel-forming cytolysin. The human protein is expressed preferentially in mature macrophages, consistent with a role cytolytic role.
Probab=96.23 E-value=0.3 Score=42.91 Aligned_cols=151 Identities=16% Similarity=0.146 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCC-----CcchhhhHHhhHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHH--HHH
Q 025307 77 LWHIYGILAMNSWFWSAVFHSRDV-----ELTEKLDCSSAVALLGFNFILAILRAFSVRDEAARVMVAAPLIAFV--TTH 149 (255)
Q Consensus 77 ~~~~~~~i~~~aW~~StvFH~RD~-----~~TE~lDYf~A~~~vl~~l~~~~~R~f~l~~~~~r~~~~~~~~~~~--~~H 149 (255)
...+|..-.+..-..||+||+-+. ..-+|+||.+-..+|.-+..-...-.+. .+....+..+...+.. +.+
T Consensus 38 ~~~vy~~~~~~~~~~St~yH~~~~s~~~~~~~~rlD~~gI~~lIaGsytP~~~~~~~--~~~~~~~~~~iw~la~~gi~~ 115 (204)
T TIGR01065 38 GFSIYGISLILLFLVSTLYHSIPKGSKAKNWLRKIDHSMIYVLIAGTYTPFLLLALP--GPLGWTVLWIIWGLAIGGIIY 115 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCcCchhHHHHHHHccHHHHHHHHHHhhHHHHHHHcC--CcHHHHHHHHHHHHHHHHHHH
Confidence 345778888888999999998873 1556889998776666554443333332 2222222221111111 111
Q ss_pred hhhcccccccccchhhhHHHHHHHHHHHHHHHHhhhcCCccchhHHHH---HHHHHHHHHHhhcCCCCcccchhhhhhhc
Q 025307 150 ILYLNFYKLDHGLNMKVCLAMGVAQLLIWAIWAGVTRHPSRWKLWLVV---VGEGLAMLLQIYDFPPYRGFVDAHALYHA 226 (255)
Q Consensus 150 v~yL~~~~fdY~YNM~~nv~~G~~~~~lW~~~~~~~~~~~~~~~~~~v---~~~~~a~~LEl~DFpP~~~~iDAHaLWHl 226 (255)
- .+...+++. .-...=++.|....+..-- ....-+.. -+..++ +.-+.++.+=..|+|--+ |-|.+||+
T Consensus 116 ~-~~~~~~~r~-~r~~~y~~~G~~~v~~~~~--~~~~~~~~-~~~~l~~gg~~Y~~G~~fY~~~~p~~~---~~H~iwH~ 187 (204)
T TIGR01065 116 K-LFFHKRPRW-LSLFLYLIMGWLVVLVIKP--LYHNLPGA-GFSLLAAGGLLYTVGAIFYALKWPIPF---TYHAIWHL 187 (204)
T ss_pred H-HHccCCCch-hHHHHHHHHHHHHHHHHHH--HHHhCCHH-HHHHHHHHhHHHHcchHheeecCCCCC---CcChHHHH
Confidence 1 121223331 2233333444333222110 11111211 111111 223456666667877433 22999999
Q ss_pred CcchhHHHHHH
Q 025307 227 ANIPLTYLWWS 237 (255)
Q Consensus 227 ~Tip~~~~wy~ 237 (255)
..+--+...|-
T Consensus 188 fV~~g~~~h~~ 198 (204)
T TIGR01065 188 FVLGASACHFV 198 (204)
T ss_pred HHHHHHHHHHH
Confidence 88766665553
No 8
>PRK15087 hemolysin; Provisional
Probab=95.98 E-value=0.39 Score=42.90 Aligned_cols=151 Identities=17% Similarity=0.193 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCC----cchhhhHHhhHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHhhhc
Q 025307 78 WHIYGILAMNSWFWSAVFHSRDVE----LTEKLDCSSAVALLGFNFILAILRAFSVRDEAARVMVAAPLIAFVTTHILYL 153 (255)
Q Consensus 78 ~~~~~~i~~~aW~~StvFH~RD~~----~TE~lDYf~A~~~vl~~l~~~~~R~f~l~~~~~r~~~~~~~~~~~~~Hv~yL 153 (255)
..+|+.-.+..-..||+||+=..+ +=+|+||.+-..+|.-+..-...-.+ +.+..+.+..+.-....+.=+..+
T Consensus 54 ~~vy~~s~~~l~~~StlYH~~~~~~~~~~~~rlDh~~I~llIaGsytP~~~~~~--~~~~~~~l~~~iW~~a~~Gi~~~~ 131 (219)
T PRK15087 54 YSLYGGSMILLFLASTLYHAIPHQRAKRWLKKFDHCAIYLLIAGTYTPFLLVGL--DSPLARGLMIVIWSLALLGILFKL 131 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHccHHHHHHHHHHhhHHHHHHHc--cCHHHHHHHHHHHHHHHHHHHHHH
Confidence 356888888889999999986522 33469999866655544332222222 222222222211111111111122
Q ss_pred -ccccccccchhhhHHHHHHHHHHHHHHHHhhhcCCccchhHHH--HHHHHHHHHHHhhcCCCCcccchhhhhhhcCcch
Q 025307 154 -NFYKLDHGLNMKVCLAMGVAQLLIWAIWAGVTRHPSRWKLWLV--VVGEGLAMLLQIYDFPPYRGFVDAHALYHAANIP 230 (255)
Q Consensus 154 -~~~~fdY~YNM~~nv~~G~~~~~lW~~~~~~~~~~~~~~~~~~--v~~~~~a~~LEl~DFpP~~~~iDAHaLWHl~Tip 230 (255)
...+|+ ...+..=++.|.+-.+.- ..+....|..--.+++ -+.-+.++.+=..|-+|+ +|++||+..+.
T Consensus 132 ~~~~~~r-~l~~~~Yl~mGw~~v~~~--~~l~~~~~~~~l~~l~~GG~~Y~~G~~fY~~~~~p~-----~H~IwH~fVl~ 203 (219)
T PRK15087 132 AFAHRFK-VLSLVTYLAMGWLSLIVI--YQLAIKLAIGGVTLLAVGGVVYSLGVIFYVCKRIPY-----NHAIWHGFVLG 203 (219)
T ss_pred HhcCCCc-hHHHHHHHHHHHHHHHHH--HHHHHhCCHHHHHHHHHHhHHHHhhHHHHccCCCCC-----chhHHHHHHHH
Confidence 123444 234444445554433321 1111122211111111 112245566666676665 89999998877
Q ss_pred hHHHHHHH
Q 025307 231 LTYLWWSF 238 (255)
Q Consensus 231 ~~~~wy~F 238 (255)
-+...|--
T Consensus 204 ga~~H~~a 211 (219)
T PRK15087 204 GSVCHFLA 211 (219)
T ss_pred HHHHHHHH
Confidence 66666543
No 9
>KOG0748 consensus Predicted membrane proteins, contain hemolysin III domain [General function prediction only; Signal transduction mechanisms]
Probab=86.35 E-value=29 Score=32.48 Aligned_cols=154 Identities=18% Similarity=0.177 Sum_probs=83.1
Q ss_pred HHhhhccCCC------cchhhhHHhhHHHHHHHHHHHHHHhccCChhHHHHHH-HHHH-HHHHHHHhhhcccccc--ccc
Q 025307 92 SAVFHSRDVE------LTEKLDCSSAVALLGFNFILAILRAFSVRDEAARVMV-AAPL-IAFVTTHILYLNFYKL--DHG 161 (255)
Q Consensus 92 StvFH~RD~~------~TE~lDYf~A~~~vl~~l~~~~~R~f~l~~~~~r~~~-~~~~-~~~~~~Hv~yL~~~~f--dY~ 161 (255)
|+++|+=-.- .=-||||.+-.+.+.-+......-.|.-.... |.+. ...+ +.+.+.=+. + ..++ .+-
T Consensus 98 S~~~H~~~~~s~~~~~~~~~lDY~GIs~li~gS~~~~~yy~f~c~~~~-~~iy~~~~~~lgi~~~~~~-l-~~~~~~~~~ 174 (286)
T KOG0748|consen 98 SSLYHLFSCHSEKVSRFFLKLDYAGISLLIIGSFLPIIYYAFYCHPFF-RLIYLPIILVLGLLAIFVS-L-SDKFRTPKR 174 (286)
T ss_pred HHHHHHHhcccHHHHHHHHHccHHhhHHHHHHHHHHHHHHhcccchHH-HHHHHHHHHHHHHHHheee-c-hhhhCCccc
Confidence 9999985444 22368999977776666655444444322222 2121 1111 111111111 1 1122 113
Q ss_pred chhhhHHHHHHHHHHH-HHHHHhhhc--C-Cc-cch---hHHHHHHHHHHHHHHhhcCCCCc--ccch----hhhhhhcC
Q 025307 162 LNMKVCLAMGVAQLLI-WAIWAGVTR--H-PS-RWK---LWLVVVGEGLAMLLQIYDFPPYR--GFVD----AHALYHAA 227 (255)
Q Consensus 162 YNM~~nv~~G~~~~~l-W~~~~~~~~--~-~~-~~~---~~~~v~~~~~a~~LEl~DFpP~~--~~iD----AHaLWHl~ 227 (255)
-+-|++++++....-+ =+.+..... + +. ... ...-.++..+|..+=....|--+ +.+| +|-+||..
T Consensus 175 r~~R~~~f~~~~~~~i~P~~h~~~~~g~~~~~~~~~~~~~~~~~~~yi~ga~fY~~riPER~~PGkfD~~G~SHQifHv~ 254 (286)
T KOG0748|consen 175 RPLRAGVFLLLGLSGILPLLHRLILFGGRGPEVVIALGYVILMAVLYLLGALFYATRIPERWFPGKFDIWGHSHQIFHVL 254 (286)
T ss_pred hhhHHHHHHHHHHhhccHhhhheeeecCCccceehhhhHHHHHHHHHHHHHHHhhcCCCcccCCCccceeCChhHHHHHH
Confidence 4677777766642211 111111111 1 11 111 11223455677778778887633 3555 49999999
Q ss_pred cchhHHHHHHHHHhhhhHHHH
Q 025307 228 NIPLTYLWWSFIRDDSEFRTT 248 (255)
Q Consensus 228 Tip~~~~wy~Fli~D~~~~~~ 248 (255)
.+--++.+++=...|.+.+.+
T Consensus 255 vv~~a~~~~~a~~~~~~~~~~ 275 (286)
T KOG0748|consen 255 VVLAALFHLEAVLLDYEWRHS 275 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998876
No 10
>PF13965 SID-1_RNA_chan: dsRNA-gated channel SID-1
Probab=67.53 E-value=53 Score=33.75 Aligned_cols=32 Identities=25% Similarity=0.393 Sum_probs=20.5
Q ss_pred cccchhhhhhhcCcch---hHHHHHHHHHhhhhHH
Q 025307 215 RGFVDAHALYHAANIP---LTYLWWSFIRDDSEFR 246 (255)
Q Consensus 215 ~~~iDAHaLWHl~Tip---~~~~wy~Fli~D~~~~ 246 (255)
.+..|.|-+||..... .+++.-.++-||.+..
T Consensus 528 ~~f~D~HDiwH~~SA~alffsf~~l~~lDddL~~v 562 (570)
T PF13965_consen 528 LGFFDWHDIWHFLSAIALFFSFLVLLTLDDDLDNV 562 (570)
T ss_pred cCccccHHHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 4678999999997643 2344445555555443
No 11
>COG1272 Predicted membrane protein, hemolysin III homolog [General function prediction only]
Probab=65.27 E-value=1.1e+02 Score=27.85 Aligned_cols=42 Identities=24% Similarity=0.387 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHhhhccCC-----CcchhhhHHhhHHHHHHHHH
Q 025307 79 HIYGILAMNSWFWSAVFHSRDV-----ELTEKLDCSSAVALLGFNFI 120 (255)
Q Consensus 79 ~~~~~i~~~aW~~StvFH~RD~-----~~TE~lDYf~A~~~vl~~l~ 120 (255)
.+|..--+..-..||++|+=-. .+=+|+||.+-..++.-+--
T Consensus 59 ~iy~~sl~~l~~~St~YH~~~~~~~~k~~~rk~DH~~I~vLIAgSyT 105 (226)
T COG1272 59 SIYGLSLFLLFLVSTLYHSIPNGQKAKAILRKFDHSGIYVLIAGSYT 105 (226)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHccHHHHHHHHHHhhH
Confidence 4566666777899999997543 46689999987766655433
No 12
>PF10277 Frag1: Frag1/DRAM/Sfk1 family; InterPro: IPR019402 This entry includes Frag1, DRAM and Sfk1 proteins. Frag1 (FGF receptor activating protein 1) is a protein that is conserved from fungi to humans. There are four potential iso-prenylation sites throughout the peptide, CILW (x2), CIIW and CIGL. Frag1 is a membrane-spanning protein that is ubiquitously expressed in adult tissues suggesting an important cellular function []. DRAM is a family of proteins conserved from nematodes to humans with six hydrophobic transmembrane regions and an endoplasmic reticulum signal peptide. It is a lysosomal protein that induces macro-autophagy as an effector of p53-mediated death, where p53 is the tumour-suppressor gene that is frequently mutated in cancer. Expression of DRAM is stress-induced []. This region is also part of a family of small plasma membrane proteins, referred to as Sfk1, that may act together with or upstream of Stt4p to generate normal levels of the essential phospholipid PI4P, thus allowing proper localisation of Stt4p to the actin cytoskeleton [, ].
Probab=51.50 E-value=1.5e+02 Score=25.01 Aligned_cols=90 Identities=18% Similarity=0.236 Sum_probs=54.3
Q ss_pred ccceeeccccccHHHHHHHHhHHHHHHhhhHHHHHHHHhh--CCCCCCCccchhhhhHHHHHHHHHHHHHHHHHhhhccC
Q 025307 22 WPFRRVYGIQVEPVAVALSALNLSIQFHGWMSFFILLYYK--LPLRPDKKTYYEYTGLWHIYGILAMNSWFWSAVFHSRD 99 (255)
Q Consensus 22 WPF~Rv~GiQ~Ep~SvlFSllNl~~h~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~aW~~StvFH~RD 99 (255)
||+.--.|.+ +|-+-+|+++-.+.-....-. ...+++ .+..+..+.. ...+-.+.+.++..+-.--+.|+..|
T Consensus 41 ~P~IS~~G~~-~Pe~~if~~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~~gl~~~a~~~~~~ 115 (215)
T PF10277_consen 41 LPYISDIGAY-PPESYIFRFGLNISAFFRLLI--VYLRYRYVRQLASKCSRW--LNILSLVFGLLSAIGLILLAIFQSTE 115 (215)
T ss_pred cCchhHhhCc-CchhHHHHHHHHHHHHHHHHH--HHHHHHHHhhhccchhhH--HHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 9999999999 999999998766544332111 111121 1111111111 22234567888888889999998888
Q ss_pred CCcchhhhHHhhHHHHHHHH
Q 025307 100 VELTEKLDCSSAVALLGFNF 119 (255)
Q Consensus 100 ~~~TE~lDYf~A~~~vl~~l 119 (255)
.+ ..-+.+|......+.
T Consensus 116 ~~---~~H~~~a~~ff~~~~ 132 (215)
T PF10277_consen 116 HP---TVHYIGAVLFFVSSF 132 (215)
T ss_pred CH---HHHHHHHHHHHHHHH
Confidence 77 455566654444443
No 13
>PF10709 DUF2511: Protein of unknown function (DUF2511); InterPro: IPR019648 This entry is represented by Bacteriophage PsP3, Gp28. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=34.25 E-value=17 Score=28.55 Aligned_cols=14 Identities=29% Similarity=0.643 Sum_probs=10.9
Q ss_pred ccccccccceeecc
Q 025307 16 VKYHGKWPFRRVYG 29 (255)
Q Consensus 16 ~QFhGKWPF~Rv~G 29 (255)
-||-+||||.|==|
T Consensus 5 ~~fG~~Wpft~eev 18 (87)
T PF10709_consen 5 FEFGDKWPFTVEEV 18 (87)
T ss_pred HHccCCCCceeeeE
Confidence 37888999998633
No 14
>PF15174 PRNT: Prion-related protein testis-specific
Probab=24.22 E-value=30 Score=24.23 Aligned_cols=9 Identities=33% Similarity=0.648 Sum_probs=7.0
Q ss_pred hhhhhhhcC
Q 025307 219 DAHALYHAA 227 (255)
Q Consensus 219 DAHaLWHl~ 227 (255)
-.|||||+-
T Consensus 26 vthSLW~Lq 34 (51)
T PF15174_consen 26 VTHSLWHLQ 34 (51)
T ss_pred HHHHHHhhc
Confidence 469999984
No 15
>KOG3402 consensus Predicted membrane protein [Function unknown]
Probab=23.04 E-value=2.9e+02 Score=22.08 Aligned_cols=43 Identities=19% Similarity=0.391 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhhhccCCCcchhhhHHhhHHHHHHHHHHHH
Q 025307 81 YGILAMNSWFWSAVFHSRDVELTEKLDCSSAVALLGFNFILAI 123 (255)
Q Consensus 81 ~~~i~~~aW~~StvFH~RD~~~TE~lDYf~A~~~vl~~l~~~~ 123 (255)
.-++...-|+||-.||.+-.+=....-=.---+.|++++..++
T Consensus 28 ~lW~VN~FwFf~~af~~pa~~~r~QIr~YVvrSavGf~fw~iv 70 (101)
T KOG3402|consen 28 WLWFVNCFWFFPVAFHSPAFPHRRQIRNYVVRSAVGFSFWTIV 70 (101)
T ss_pred HHHHHHHHHHhHHHHcCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666799999999998875555443333445777777654
No 16
>PF00599 Flu_M2: Influenza Matrix protein (M2); InterPro: IPR002089 This entry contains Influenza virus matrix protein 2. It is an integral membrane protein that is expressed on the infected cell surface and incorporated into virions where it is a minor component. The protein spans the viral membrane with an extracellular amino-terminus and a cytoplasmic carboxy-terminus. The transmembrane domain of the M2 protein forms the channel pore. The M2 protein, which forms a homotetramer, has H+ ion channel which was found to be regulated by pH [ and may have a pivotal role in the biology of Influenza virus infection [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015992 proton transport, 0033644 host cell membrane, 0055036 virion membrane; PDB: 2L0J_A 2KWX_B 2KIH_A 2RLF_A 1MP6_A 2LJB_D 2LJC_A 2H95_B 1NYJ_B 3BKD_E ....
Probab=20.79 E-value=92 Score=24.61 Aligned_cols=16 Identities=19% Similarity=0.698 Sum_probs=12.4
Q ss_pred hhHHHHHHHHHHHHHHH
Q 025307 165 KVCLAMGVAQLLIWAIW 181 (255)
Q Consensus 165 ~~nv~~G~~~~~lW~~~ 181 (255)
.+|+ +|+++.+||++=
T Consensus 29 aA~I-iGILHLiLWI~D 44 (97)
T PF00599_consen 29 AANI-IGILHLILWILD 44 (97)
T ss_dssp HHHH-HHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHH
Confidence 3444 899999999954
No 17
>PF08333 DUF1725: Protein of unknown function (DUF1725); InterPro: IPR013544 This domain is found at the C terminus of many eukaryotic and one bacterial sequence. Many of its members are annotated as being putative L1 retrotransposons or LINE-1 reverse transcriptase homologues. The region in question is found repeated in some family members.
Probab=20.17 E-value=26 Score=20.37 Aligned_cols=6 Identities=67% Similarity=1.747 Sum_probs=3.5
Q ss_pred cccccc
Q 025307 17 KYHGKW 22 (255)
Q Consensus 17 QFhGKW 22 (255)
||.|||
T Consensus 2 ~F~~kW 7 (20)
T PF08333_consen 2 KFAGKW 7 (20)
T ss_pred chHHHH
Confidence 455665
Done!