Query 025307
Match_columns 255
No_of_seqs 110 out of 224
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 07:43:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025307.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025307hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bkd_A Transmembrane domain of 47.7 15 0.0005 21.7 2.5 14 166-180 9-22 (26)
2 3lbw_A M2 protein; proton chan 23.8 70 0.0024 18.3 2.6 12 169-180 8-19 (23)
3 3ux4_A Acid-activated UREA cha 18.0 3.5E+02 0.012 23.1 7.0 29 106-134 73-104 (195)
4 2ljb_A M2 protein, BM2 protein 15.3 1.2E+02 0.0043 18.9 2.6 12 169-180 15-26 (35)
5 2kih_A Matrix protein 2; S31N, 15.1 1.2E+02 0.0041 19.7 2.6 13 169-181 15-27 (43)
6 2k8j_X P7TM2; P7 polypeptide, 9.9 35 0.0012 20.7 -1.1 9 17-25 9-17 (29)
7 3kff_A MUP 4, major urinary pr 9.5 81 0.0028 24.6 0.6 22 7-28 4-25 (162)
8 1bj7_A D 2; allergen, lipocali 5.7 1.5E+02 0.0052 22.6 0.5 19 10-28 4-22 (156)
9 2ckx_A NGTRF1, telomere bindin 5.7 88 0.003 22.9 -0.9 9 216-224 72-80 (83)
10 3ov9_A Nucleoprotein; orthogon 5.6 1.4E+02 0.0047 26.5 0.1 11 216-226 164-174 (245)
No 1
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=47.72 E-value=15 Score=21.66 Aligned_cols=14 Identities=29% Similarity=0.933 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHHH
Q 025307 166 VCLAMGVAQLLIWAI 180 (255)
Q Consensus 166 ~nv~~G~~~~~lW~~ 180 (255)
+| ++|+++.++|++
T Consensus 9 a~-iiGilHLiLwIl 22 (26)
T 3bkd_A 9 AS-IMGILHLILWIL 22 (26)
T ss_dssp HH-HHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHH
Confidence 44 489999999985
No 2
>3lbw_A M2 protein; proton channel, M2TM, HOST CEL membrane, hydrogen ION transport, ionic channel, transmembr virion, transport protein; HET: XYL; 1.65A {Influenza a virus}
Probab=23.84 E-value=70 Score=18.25 Aligned_cols=12 Identities=17% Similarity=0.863 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHH
Q 025307 169 AMGVAQLLIWAI 180 (255)
Q Consensus 169 ~~G~~~~~lW~~ 180 (255)
++|+++.++|++
T Consensus 8 iigIlHLiLwIl 19 (23)
T 3lbw_A 8 IIAILHLILWIL 19 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 489999999985
No 3
>3ux4_A Acid-activated UREA channel; transport protein; HET: XP4; 3.26A {Helicobacter pylori}
Probab=18.00 E-value=3.5e+02 Score=23.08 Aligned_cols=29 Identities=17% Similarity=0.087 Sum_probs=21.0
Q ss_pred hhHHhhHHHHHHH---HHHHHHHhccCChhHH
Q 025307 106 LDCSSAVALLGFN---FILAILRAFSVRDEAA 134 (255)
Q Consensus 106 lDYf~A~~~vl~~---l~~~~~R~f~l~~~~~ 134 (255)
.||++|....+|+ +|+++-|.++.+.+..
T Consensus 73 ~~~ya~a~~lLFgFTYL~Vain~~~~lD~rgl 104 (195)
T 3ux4_A 73 TSFYGPATGLLFGFTYLYAAINHTFGLDWRPY 104 (195)
T ss_dssp -CTHHHHHHHHHHHHHHHHHHHHHHTCCHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCCCCcch
Confidence 6688877677777 5668889999887643
No 4
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=15.31 E-value=1.2e+02 Score=18.91 Aligned_cols=12 Identities=25% Similarity=0.949 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHH
Q 025307 169 AMGVAQLLIWAI 180 (255)
Q Consensus 169 ~~G~~~~~lW~~ 180 (255)
++|+++.++|++
T Consensus 15 IigiLHlilWil 26 (35)
T 2ljb_A 15 IIGILHFIAWTI 26 (35)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 489999999985
No 5
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* 2l0j_A 2kwx_A
Probab=15.12 E-value=1.2e+02 Score=19.65 Aligned_cols=13 Identities=23% Similarity=0.820 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHH
Q 025307 169 AMGVAQLLIWAIW 181 (255)
Q Consensus 169 ~~G~~~~~lW~~~ 181 (255)
++|+++.++|++=
T Consensus 15 iiGIlHLiLwild 27 (43)
T 2kih_A 15 IIGILHLILWILD 27 (43)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4899999999954
No 6
>2k8j_X P7TM2; P7 polypeptide, HCV, ION chaneling, transmembrane, viral Pro; NMR {Synthetic}
Probab=9.85 E-value=35 Score=20.73 Aligned_cols=9 Identities=33% Similarity=0.885 Sum_probs=5.6
Q ss_pred cccccccce
Q 025307 17 KYHGKWPFR 25 (255)
Q Consensus 17 QFhGKWPF~ 25 (255)
-++|+||+.
T Consensus 9 ~~~g~Wpll 17 (29)
T 2k8j_X 9 ALYGVWPLL 17 (29)
T ss_dssp HHHHHHHHH
T ss_pred HHHhHHHHH
Confidence 356777763
No 7
>3kff_A MUP 4, major urinary protein 4; pheromone, lipocalin, beta barrel, DI bond, pheromone-binding, secreted, transport, transport Pro; 0.96A {Mus musculus} SCOP: b.60.1.1 PDB: 3kfg_A 3kfh_A 3kfi_A 2l9c_A 2lb6_A 1i06_A 1i05_A* 1i04_A 1mup_A 1znd_A 1qy0_A* 1qy2_A* 1qy1_A 1zne_A 1zng_A 1znh_A 1znk_A* 1znl_A* 2dm5_A* 2ozq_A ...
Probab=9.51 E-value=81 Score=24.56 Aligned_cols=22 Identities=14% Similarity=0.092 Sum_probs=12.7
Q ss_pred HHHHcCCCCccccccccceeec
Q 025307 7 EREKVGDKPVKYHGKWPFRRVY 28 (255)
Q Consensus 7 ~R~~~g~~i~QFhGKWPF~Rv~ 28 (255)
.-.+.+-...||-|||=-+-+.
T Consensus 4 ~~v~~nfd~~k~~G~Wy~ia~a 25 (162)
T 3kff_A 4 TSKGQNLNVEKINGEWFSILLA 25 (162)
T ss_dssp ------CCGGGGCEECEEEEEE
T ss_pred ccccCCCChHHcceEeEEEEEE
Confidence 3446678889999999766543
No 8
>1bj7_A D 2; allergen, lipocalin; 1.80A {Bos taurus} SCOP: b.60.1.1
Probab=5.74 E-value=1.5e+02 Score=22.61 Aligned_cols=19 Identities=21% Similarity=0.338 Sum_probs=11.7
Q ss_pred HcCCCCccccccccceeec
Q 025307 10 KVGDKPVKYHGKWPFRRVY 28 (255)
Q Consensus 10 ~~g~~i~QFhGKWPF~Rv~ 28 (255)
..+.+..||-|||=-.-..
T Consensus 4 ~~~fd~~~~~G~Wy~ia~a 22 (156)
T 1bj7_A 4 PAEIDPSKIPGEWRIIYAA 22 (156)
T ss_dssp ---CCGGGSSEECEEEEEE
T ss_pred cccCChhHcCeeeEEEEEE
Confidence 4566778899999665543
No 9
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=5.66 E-value=88 Score=22.86 Aligned_cols=9 Identities=33% Similarity=0.575 Sum_probs=6.5
Q ss_pred ccchhhhhh
Q 025307 216 GFVDAHALY 224 (255)
Q Consensus 216 ~~iDAHaLW 224 (255)
+++||||.|
T Consensus 72 rv~~~~a~~ 80 (83)
T 2ckx_A 72 RVLAAHAYW 80 (83)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 567777777
No 10
>3ov9_A Nucleoprotein; orthogonal bundle, viral genomic encapsidation, viral protein; 1.60A {Rift valley fever virus} PDB: 3ouo_A 3lyf_A 4h5m_A 4h5o_A 4h5p_A 4h5q_A 4h6f_A 4h6g_A
Probab=5.59 E-value=1.4e+02 Score=26.49 Aligned_cols=11 Identities=45% Similarity=0.794 Sum_probs=9.3
Q ss_pred ccchhhhhhhc
Q 025307 216 GFVDAHALYHA 226 (255)
Q Consensus 216 ~~iDAHaLWHl 226 (255)
-++|||+|+++
T Consensus 164 ~i~dAh~Lf~~ 174 (245)
T 3ov9_A 164 AILDAHSLYLL 174 (245)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 57899999985
Done!