Query 025307
Match_columns 255
No_of_seqs 110 out of 224
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 07:43:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025307.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025307hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nyra1 c.51.1.1 (A:533-645) T 23.8 8.3 0.0006 27.3 0.2 8 17-24 2-9 (113)
2 d2a2ua_ b.60.1.1 (A:) Major ur 10.7 21 0.0015 25.3 -0.6 23 5-27 2-24 (158)
3 d1ggla_ b.60.1.2 (A:) Cellular 8.1 43 0.0031 24.2 0.3 17 15-31 1-17 (134)
4 d1znda1 b.60.1.1 (A:1-157) Maj 7.3 32 0.0023 24.3 -0.8 20 8-27 5-24 (157)
5 d1gt1a_ b.60.1.1 (A:) Odorant- 6.7 49 0.0036 23.5 0.1 16 10-25 4-19 (158)
6 d1beba_ b.60.1.1 (A:) beta-Lac 6.2 72 0.0052 22.1 0.8 15 11-25 4-18 (156)
7 d1bj7a_ b.60.1.1 (A:) Lipocali 4.6 94 0.0068 21.5 0.5 11 15-25 3-13 (150)
8 d1jb0j_ f.23.18.1 (J:) Subunit 4.4 2E+02 0.015 17.0 1.9 15 199-213 20-34 (41)
9 d1ew3a_ b.60.1.1 (A:) Lipocali 4.4 87 0.0064 21.7 0.1 13 12-24 5-17 (159)
10 d1eh9a3 c.1.8.1 (A:91-490) Gly 4.3 1E+02 0.0076 24.5 0.6 10 102-111 31-40 (400)
No 1
>d1nyra1 c.51.1.1 (A:533-645) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=23.85 E-value=8.3 Score=27.35 Aligned_cols=8 Identities=25% Similarity=0.630 Sum_probs=6.9
Q ss_pred cccccccc
Q 025307 17 KYHGKWPF 24 (255)
Q Consensus 17 QFhGKWPF 24 (255)
.|.||||+
T Consensus 2 ~~~G~~P~ 9 (113)
T d1nyra1 2 ETKGAFPT 9 (113)
T ss_dssp HHTTCCCT
T ss_pred CCCCCCCc
Confidence 58999995
No 2
>d2a2ua_ b.60.1.1 (A:) Major urinary protein/alpha-2u-globulin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=10.68 E-value=21 Score=25.35 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=16.6
Q ss_pred hHHHHHcCCCCccccccccceee
Q 025307 5 EGEREKVGDKPVKYHGKWPFRRV 27 (255)
Q Consensus 5 ~~~R~~~g~~i~QFhGKWPF~Rv 27 (255)
|.+..+++..+.||-|||=-.-.
T Consensus 2 ~~~~~~~nfdl~k~~G~Wy~ia~ 24 (158)
T d2a2ua_ 2 EASSTRGNLDVAKLNGDWFSIVV 24 (158)
T ss_dssp CBCTTTTCCCGGGGCEECEEEEE
T ss_pred CCCcccccCChHHcCEEeEEEEE
Confidence 34456778889999999966543
No 3
>d1ggla_ b.60.1.2 (A:) Cellular retinol-binding protein III {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.12 E-value=43 Score=24.22 Aligned_cols=17 Identities=18% Similarity=0.389 Sum_probs=12.6
Q ss_pred Cccccccccceeecccc
Q 025307 15 PVKYHGKWPFRRVYGIQ 31 (255)
Q Consensus 15 i~QFhGKWPF~Rv~GiQ 31 (255)
++||-|||-+.+-=...
T Consensus 1 p~~f~Gtwkl~~sENfd 17 (134)
T d1ggla_ 1 PPNLTGYYRFVSQKNME 17 (134)
T ss_dssp CCSCCEEEEEEEEECHH
T ss_pred CCCcCEEEEEEeccCHH
Confidence 57999999988843333
No 4
>d1znda1 b.60.1.1 (A:1-157) Major urinary protein/alpha-2u-globulin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.31 E-value=32 Score=24.25 Aligned_cols=20 Identities=15% Similarity=0.152 Sum_probs=14.9
Q ss_pred HHHcCCCCccccccccceee
Q 025307 8 REKVGDKPVKYHGKWPFRRV 27 (255)
Q Consensus 8 R~~~g~~i~QFhGKWPF~Rv 27 (255)
..+++-++.||-|||=....
T Consensus 5 ~~~~nfdl~k~~G~Wy~Ia~ 24 (157)
T d1znda1 5 STGRNFNVEKINGEWHTIIL 24 (157)
T ss_dssp TTSTTCCGGGGCEECEEEEE
T ss_pred ccccCCChHHcCEECEEEEE
Confidence 44567788999999976544
No 5
>d1gt1a_ b.60.1.1 (A:) Odorant-binding protein {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.71 E-value=49 Score=23.54 Aligned_cols=16 Identities=13% Similarity=0.314 Sum_probs=12.3
Q ss_pred HcCCCCccccccccce
Q 025307 10 KVGDKPVKYHGKWPFR 25 (255)
Q Consensus 10 ~~g~~i~QFhGKWPF~ 25 (255)
+.+..+.||-|||=-+
T Consensus 4 ~~~~d~~k~~G~Wy~i 19 (158)
T d1gt1a_ 4 EAEQNLSELSGPWRTV 19 (158)
T ss_dssp CCCCCCGGGCEEEEEE
T ss_pred cccCChHHCCEEeEEE
Confidence 3567788999999765
No 6
>d1beba_ b.60.1.1 (A:) beta-Lactoglobulin {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.22 E-value=72 Score=22.10 Aligned_cols=15 Identities=27% Similarity=0.255 Sum_probs=11.2
Q ss_pred cCCCCccccccccce
Q 025307 11 VGDKPVKYHGKWPFR 25 (255)
Q Consensus 11 ~g~~i~QFhGKWPF~ 25 (255)
++-.+.||-|||=-+
T Consensus 4 ~~fdl~k~~G~Wy~I 18 (156)
T d1beba_ 4 KGLDIQKVAGTWYSL 18 (156)
T ss_dssp TTCCGGGGCEECEEE
T ss_pred cCCChHHcCEEeEEE
Confidence 456788999999543
No 7
>d1bj7a_ b.60.1.1 (A:) Lipocalin allergen {Cow (Bos taurus), bos d 2 [TaxId: 9913]}
Probab=4.60 E-value=94 Score=21.49 Aligned_cols=11 Identities=36% Similarity=0.839 Sum_probs=6.3
Q ss_pred Cccccccccce
Q 025307 15 PVKYHGKWPFR 25 (255)
Q Consensus 15 i~QFhGKWPF~ 25 (255)
+.||-|||=-.
T Consensus 3 ~~k~~G~Wy~i 13 (150)
T d1bj7a_ 3 PSKIPGEWRII 13 (150)
T ss_dssp GGGSSEECEEE
T ss_pred hHHCCEECEEE
Confidence 45666666443
No 8
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=4.39 E-value=2e+02 Score=17.02 Aligned_cols=15 Identities=20% Similarity=0.361 Sum_probs=12.4
Q ss_pred HHHHHHHHHhhcCCC
Q 025307 199 GEGLAMLLQIYDFPP 213 (255)
Q Consensus 199 ~~~~a~~LEl~DFpP 213 (255)
+.+.+.+.|+.-|.|
T Consensus 20 ~~tAG~lIEiNRFfP 34 (41)
T d1jb0j_ 20 TITAGILIEFNRFYP 34 (41)
T ss_dssp HHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhhCc
Confidence 446788899999988
No 9
>d1ew3a_ b.60.1.1 (A:) Lipocalin allergen {Horse (Equus caballus), equ c 1 [TaxId: 9796]}
Probab=4.36 E-value=87 Score=21.73 Aligned_cols=13 Identities=23% Similarity=0.289 Sum_probs=8.8
Q ss_pred CCCCccccccccc
Q 025307 12 GDKPVKYHGKWPF 24 (255)
Q Consensus 12 g~~i~QFhGKWPF 24 (255)
+-.+.||-|||=-
T Consensus 5 nfdl~k~~G~Wy~ 17 (159)
T d1ew3a_ 5 NFDISKISGEWYS 17 (159)
T ss_dssp ECCGGGCCEECEE
T ss_pred cCChHHcCEEEEE
Confidence 4456788888854
No 10
>d1eh9a3 c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrolase, central domain {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]}
Probab=4.33 E-value=1e+02 Score=24.54 Aligned_cols=10 Identities=30% Similarity=0.358 Sum_probs=5.2
Q ss_pred cchhhhHHhh
Q 025307 102 LTEKLDCSSA 111 (255)
Q Consensus 102 ~TE~lDYf~A 111 (255)
++|||||+-.
T Consensus 31 i~~~ldyi~~ 40 (400)
T d1eh9a3 31 VIRKLDYLKD 40 (400)
T ss_dssp HHHTHHHHHH
T ss_pred HHHHhHHHHH
Confidence 4455555543
Done!