Query 025310
Match_columns 255
No_of_seqs 121 out of 438
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 07:46:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025310.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025310hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2dj7a1 g.39.1.3 (A:44-74) Act 47.1 1.2 8.7E-05 24.5 -0.9 10 16-25 19-28 (31)
2 d1m0da_ c.52.1.17 (A:) Endonuc 9.8 31 0.0022 24.8 0.1 13 10-22 88-100 (129)
3 d1nekd_ f.21.2.2 (D:) Succinat 9.4 55 0.004 22.2 1.4 24 25-48 46-69 (113)
4 d1g47a2 g.39.1.3 (A:36-70) Pin 8.9 23 0.0017 19.5 -0.7 7 18-24 23-29 (35)
5 d2bi7a2 d.16.1.7 (A:248-316) U 7.7 47 0.0034 21.0 0.3 17 11-27 17-33 (69)
6 d1gg2g_ a.137.3.1 (G:) Transdu 7.6 48 0.0035 19.9 0.3 15 15-29 30-44 (54)
7 d1tbge_ a.137.3.1 (E:) Transdu 6.0 51 0.0037 20.8 -0.2 13 16-28 41-53 (68)
8 d1i8ta2 d.16.1.7 (A:245-313) U 5.7 75 0.0055 19.9 0.5 17 11-27 18-34 (69)
9 d2fomb1 b.47.1.3 (B:18-167) NS 5.7 59 0.0043 23.7 -0.0 12 204-215 29-40 (150)
10 d2fp7b1 b.47.1.3 (B:19-170) NS 5.6 60 0.0044 23.7 -0.0 12 204-215 28-39 (152)
No 1
>d2dj7a1 g.39.1.3 (A:44-74) Actin-binding LIM protein 3, abLIM-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=47.05 E-value=1.2 Score=24.46 Aligned_cols=10 Identities=30% Similarity=0.810 Sum_probs=7.7
Q ss_pred chhhhhcCcc
Q 025310 16 IECCEKNYAY 25 (255)
Q Consensus 16 ~dwCE~~y~~ 25 (255)
+-|||+||+.
T Consensus 19 ~PyCe~DY~~ 28 (31)
T d2dj7a1 19 VPYCESDYHA 28 (31)
T ss_dssp EEECTTHHHH
T ss_pred CcccHHHHHH
Confidence 4599999864
No 2
>d1m0da_ c.52.1.17 (A:) Endonuclease I (Holliday junction resolvase) {Bacteriophage T7 [TaxId: 10760]}
Probab=9.84 E-value=31 Score=24.79 Aligned_cols=13 Identities=54% Similarity=0.662 Sum_probs=10.6
Q ss_pred ccccccchhhhhc
Q 025310 10 GPVTSTIECCEKN 22 (255)
Q Consensus 10 g~~tS~~dwCE~~ 22 (255)
|.-|...+|||.+
T Consensus 88 ~sktTYa~WCek~ 100 (129)
T d1m0da_ 88 GSPTSYGEFCEKH 100 (129)
T ss_dssp TCSCBHHHHHHHH
T ss_pred CCcCcHHHHHHHc
Confidence 4568889999996
No 3
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=9.43 E-value=55 Score=22.24 Aligned_cols=24 Identities=13% Similarity=0.333 Sum_probs=19.0
Q ss_pred ccccccchhhhhhhHHHHHHHHHH
Q 025310 25 YSSYIAEFYNTLSNIPTILLALIG 48 (255)
Q Consensus 25 ~s~yiaEf~NtlSNl~F~~~~l~g 48 (255)
...+..+|+|.+-...|++...+-
T Consensus 46 ~~~~~~~~~~~il~~l~l~~~~~H 69 (113)
T d1nekd_ 46 WIGFFASAFTKVFTLLALFSILIH 69 (113)
T ss_dssp HHHHHSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhChHHHHHHHHHHHHHHHH
Confidence 446788899999999998877663
No 4
>d1g47a2 g.39.1.3 (A:36-70) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.85 E-value=23 Score=19.45 Aligned_cols=7 Identities=29% Similarity=1.061 Sum_probs=5.6
Q ss_pred hhhhcCc
Q 025310 18 CCEKNYA 24 (255)
Q Consensus 18 wCE~~y~ 24 (255)
|||.+|.
T Consensus 23 YCe~~Y~ 29 (35)
T d1g47a2 23 YCEHDFQ 29 (35)
T ss_dssp ECHHHHH
T ss_pred cChHhHH
Confidence 8999873
No 5
>d2bi7a2 d.16.1.7 (A:248-316) UDP-galactopyranose mutase {Klebsiella pneumoniae [TaxId: 573]}
Probab=7.71 E-value=47 Score=21.03 Aligned_cols=17 Identities=12% Similarity=0.403 Sum_probs=12.7
Q ss_pred cccccchhhhhcCcccc
Q 025310 11 PVTSTIECCEKNYAYSS 27 (255)
Q Consensus 11 ~~tS~~dwCE~~y~~s~ 27 (255)
.+.+.||||+.|+-.++
T Consensus 17 Q~~avvNyp~~~~~yTR 33 (69)
T d2bi7a2 17 QGCAVMNYCSVDVPYTR 33 (69)
T ss_dssp SSSSEEEECSTTSSSSE
T ss_pred ccccEEeCCCCCCCcEE
Confidence 56889999987755554
No 6
>d1gg2g_ a.137.3.1 (G:) Transducin (heterotrimeric G protein), gamma chain {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.58 E-value=48 Score=19.91 Aligned_cols=15 Identities=13% Similarity=0.335 Sum_probs=10.1
Q ss_pred cchhhhhcCcccccc
Q 025310 15 TIECCEKNYAYSSYI 29 (255)
Q Consensus 15 ~~dwCE~~y~~s~yi 29 (255)
-++|||++-...+++
T Consensus 30 l~~y~e~~~~~Dpll 44 (54)
T d1gg2g_ 30 LMAYCEAHAKEDPLL 44 (54)
T ss_dssp HHHHHHHHGGGCTTT
T ss_pred HHHHHHhcCcCCCCc
Confidence 468999865555554
No 7
>d1tbge_ a.137.3.1 (E:) Transducin (heterotrimeric G protein), gamma chain {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.98 E-value=51 Score=20.83 Aligned_cols=13 Identities=8% Similarity=0.046 Sum_probs=8.8
Q ss_pred chhhhhcCccccc
Q 025310 16 IECCEKNYAYSSY 28 (255)
Q Consensus 16 ~dwCE~~y~~s~y 28 (255)
++|||++-...++
T Consensus 41 ~~yce~~~~~DpL 53 (68)
T d1tbge_ 41 RDYVEERSGEDPL 53 (68)
T ss_dssp HHHHHTTTTSCHH
T ss_pred HHHHHhcCCCCCc
Confidence 5799997554443
No 8
>d1i8ta2 d.16.1.7 (A:245-313) UDP-galactopyranose mutase {Escherichia coli [TaxId: 562]}
Probab=5.70 E-value=75 Score=19.90 Aligned_cols=17 Identities=18% Similarity=0.317 Sum_probs=12.0
Q ss_pred cccccchhhhhcCcccc
Q 025310 11 PVTSTIECCEKNYAYSS 27 (255)
Q Consensus 11 ~~tS~~dwCE~~y~~s~ 27 (255)
.+.+.||||+.|+-.++
T Consensus 18 Q~~aviNy~~~~~~yTR 34 (69)
T d1i8ta2 18 QGNAVINFTDANVPYTR 34 (69)
T ss_dssp SSSSEEEECCTTSSCSE
T ss_pred cCccEEeCCCCCCCeeE
Confidence 46788999987644443
No 9
>d2fomb1 b.47.1.3 (B:18-167) NS3 protease {Dengue virus type 2 [TaxId: 11060]}
Probab=5.69 E-value=59 Score=23.69 Aligned_cols=12 Identities=42% Similarity=0.722 Sum_probs=8.7
Q ss_pred cchHHHHHHHhH
Q 025310 204 GHALWHVFMGFN 215 (255)
Q Consensus 204 ~H~~WHiltal~ 215 (255)
+|..||+--|-+
T Consensus 29 fHTmWHVTrGa~ 40 (150)
T d2fomb1 29 FHTMWHVTRGAV 40 (150)
T ss_dssp EEEEHHHHTTCC
T ss_pred EEEeeeecCCce
Confidence 599999865543
No 10
>d2fp7b1 b.47.1.3 (B:19-170) NS3 protease {West nile virus [TaxId: 11082]}
Probab=5.64 E-value=60 Score=23.71 Aligned_cols=12 Identities=42% Similarity=0.722 Sum_probs=8.7
Q ss_pred cchHHHHHHHhH
Q 025310 204 GHALWHVFMGFN 215 (255)
Q Consensus 204 ~H~~WHiltal~ 215 (255)
+|..||+--|-+
T Consensus 28 fHTmWHVTrGa~ 39 (152)
T d2fp7b1 28 FHTLWHTTKGAA 39 (152)
T ss_dssp EEEEHHHHTTCC
T ss_pred EEEeeeecCCce
Confidence 599999865543
Done!