Query 025312
Match_columns 255
No_of_seqs 156 out of 1403
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 04:34:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025312.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025312hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 5.8E-60 1.3E-64 405.8 24.1 247 8-255 1-285 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 1.1E-56 2.4E-61 378.9 22.8 250 3-255 7-301 (336)
3 COG0656 ARA1 Aldo/keto reducta 100.0 8.1E-57 1.8E-61 373.1 18.2 225 7-255 2-240 (280)
4 PRK09912 L-glyceraldehyde 3-ph 100.0 4.7E-54 1E-58 375.2 24.9 246 6-255 11-308 (346)
5 TIGR01293 Kv_beta voltage-depe 100.0 3.4E-54 7.3E-59 372.4 23.2 241 10-255 1-292 (317)
6 PRK10625 tas putative aldo-ket 100.0 3E-53 6.4E-58 370.6 24.1 244 8-255 1-315 (346)
7 PLN02587 L-galactose dehydroge 100.0 6.4E-53 1.4E-57 364.0 22.8 239 10-255 1-272 (314)
8 KOG1577 Aldo/keto reductase fa 100.0 2.3E-53 4.9E-58 352.6 17.2 221 10-255 6-261 (300)
9 PRK10376 putative oxidoreducta 100.0 6.4E-52 1.4E-56 353.9 24.0 245 6-255 5-264 (290)
10 cd06660 Aldo_ket_red Aldo-keto 100.0 1.4E-51 2.9E-56 351.5 23.8 239 10-255 1-263 (285)
11 COG4989 Predicted oxidoreducta 100.0 2.2E-50 4.7E-55 321.9 16.5 245 8-255 1-269 (298)
12 PF00248 Aldo_ket_red: Aldo/ke 100.0 8.7E-50 1.9E-54 340.0 17.8 227 22-255 1-259 (283)
13 PRK14863 bifunctional regulato 100.0 1.9E-49 4.2E-54 338.2 19.8 225 17-255 2-258 (292)
14 PRK11172 dkgB 2,5-diketo-D-glu 100.0 6.4E-49 1.4E-53 331.6 20.4 213 18-255 1-228 (267)
15 PRK11565 dkgA 2,5-diketo-D-glu 100.0 1.9E-48 4.1E-53 329.9 19.3 218 11-255 7-238 (275)
16 COG1453 Predicted oxidoreducta 100.0 1.4E-46 3.1E-51 315.4 17.2 237 8-255 1-258 (391)
17 KOG1576 Predicted oxidoreducta 100.0 1.2E-44 2.6E-49 291.1 17.0 245 4-255 17-297 (342)
18 KOG3023 Glutamate-cysteine lig 97.4 0.00026 5.6E-09 57.5 4.9 61 140-201 155-217 (285)
19 PRK10550 tRNA-dihydrouridine s 90.7 8.7 0.00019 33.3 12.8 132 39-183 73-223 (312)
20 PRK13958 N-(5'-phosphoribosyl) 88.0 2.1 4.6E-05 34.7 6.7 67 118-186 17-84 (207)
21 cd04740 DHOD_1B_like Dihydroor 86.5 19 0.00042 30.6 12.4 130 39-184 100-260 (296)
22 PRK01222 N-(5'-phosphoribosyl) 83.7 4.1 9E-05 33.1 6.4 67 118-186 19-86 (210)
23 PRK05414 urocanate hydratase; 82.8 26 0.00057 32.3 11.3 151 15-186 93-268 (556)
24 TIGR01228 hutU urocanate hydra 81.7 33 0.00072 31.5 11.5 151 15-186 84-259 (545)
25 COG1748 LYS9 Saccharopine dehy 81.0 9 0.00019 34.2 7.8 83 39-137 77-159 (389)
26 COG3172 NadR Predicted ATPase/ 80.7 8.9 0.00019 29.9 6.7 99 52-154 78-185 (187)
27 PF03102 NeuB: NeuB family; I 80.5 14 0.00031 30.7 8.5 112 38-168 53-184 (241)
28 PRK13796 GTPase YqeH; Provisio 78.6 47 0.001 29.4 12.2 120 38-169 54-176 (365)
29 PF00682 HMGL-like: HMGL-like 77.9 20 0.00042 29.4 8.7 122 38-174 11-144 (237)
30 PRK00730 rnpA ribonuclease P; 76.0 17 0.00038 27.4 7.0 64 81-154 46-111 (138)
31 PRK07379 coproporphyrinogen II 75.5 23 0.00049 31.8 8.9 60 105-166 179-255 (400)
32 PRK06294 coproporphyrinogen II 75.2 24 0.00051 31.3 8.9 60 105-166 167-243 (370)
33 PRK07259 dihydroorotate dehydr 75.0 52 0.0011 28.1 10.8 132 39-184 102-263 (301)
34 COG1801 Uncharacterized conser 74.0 48 0.001 28.0 10.0 108 22-137 4-115 (263)
35 COG2089 SpsE Sialic acid synth 73.5 62 0.0013 28.2 11.1 116 38-172 87-222 (347)
36 PRK05660 HemN family oxidoredu 72.8 32 0.0007 30.6 9.2 60 105-166 171-243 (378)
37 PRK09058 coproporphyrinogen II 72.0 26 0.00056 32.0 8.6 60 105-166 227-304 (449)
38 COG0635 HemN Coproporphyrinoge 69.6 52 0.0011 29.8 9.8 109 20-166 148-276 (416)
39 COG0135 TrpF Phosphoribosylant 69.1 19 0.00042 29.2 6.3 64 119-186 19-84 (208)
40 PLN02363 phosphoribosylanthran 67.7 23 0.0005 29.7 6.7 75 106-186 56-131 (256)
41 TIGR02370 pyl_corrinoid methyl 67.5 62 0.0013 25.8 9.1 130 39-190 10-148 (197)
42 PRK09427 bifunctional indole-3 67.5 21 0.00045 32.7 6.8 66 118-187 273-339 (454)
43 PRK13803 bifunctional phosphor 67.4 20 0.00043 34.2 7.0 69 119-187 20-89 (610)
44 COG1121 ZnuC ABC-type Mn/Zn tr 67.3 36 0.00077 28.6 7.7 68 104-174 111-207 (254)
45 cd07937 DRE_TIM_PC_TC_5S Pyruv 66.6 79 0.0017 26.7 12.9 124 37-172 17-154 (275)
46 PRK13347 coproporphyrinogen II 66.4 42 0.00091 30.7 8.7 60 105-166 216-291 (453)
47 cd03319 L-Ala-DL-Glu_epimerase 65.3 89 0.0019 26.8 12.1 125 39-187 134-261 (316)
48 PRK08446 coproporphyrinogen II 64.4 1E+02 0.0022 27.1 10.6 60 105-166 162-231 (350)
49 PRK10415 tRNA-dihydrouridine s 64.2 97 0.0021 26.9 11.2 134 39-184 75-224 (321)
50 PRK13361 molybdenum cofactor b 63.6 99 0.0022 26.8 15.2 128 38-188 45-194 (329)
51 cd02810 DHOD_DHPD_FMN Dihydroo 63.5 91 0.002 26.3 11.5 131 39-184 109-272 (289)
52 PRK05628 coproporphyrinogen II 63.3 72 0.0016 28.2 9.4 59 105-166 172-248 (375)
53 cd07948 DRE_TIM_HCS Saccharomy 60.8 1E+02 0.0022 25.9 10.3 25 38-62 19-43 (262)
54 cd00405 PRAI Phosphoribosylant 60.6 57 0.0012 26.0 7.7 45 118-169 69-113 (203)
55 PF05690 ThiG: Thiazole biosyn 60.1 80 0.0017 26.2 8.2 69 105-174 73-142 (247)
56 COG2355 Zn-dependent dipeptida 59.6 74 0.0016 27.6 8.4 106 42-163 150-260 (313)
57 PF01175 Urocanase: Urocanase; 59.2 27 0.00059 32.2 5.9 129 44-186 105-258 (546)
58 TIGR02090 LEU1_arch isopropylm 59.1 1.3E+02 0.0028 26.6 10.2 25 38-62 19-43 (363)
59 TIGR00126 deoC deoxyribose-pho 59.0 66 0.0014 26.1 7.7 72 39-125 130-205 (211)
60 COG5310 Homospermidine synthas 58.7 57 0.0012 28.6 7.4 135 1-159 1-152 (481)
61 TIGR00737 nifR3_yhdG putative 58.5 1.2E+02 0.0026 26.1 11.7 137 39-187 73-225 (319)
62 PRK00507 deoxyribose-phosphate 58.5 54 0.0012 26.9 7.1 75 38-124 133-208 (221)
63 PRK05799 coproporphyrinogen II 58.2 1E+02 0.0022 27.2 9.5 60 105-166 163-239 (374)
64 cd02930 DCR_FMN 2,4-dienoyl-Co 58.0 1.3E+02 0.0028 26.4 13.3 98 81-183 201-305 (353)
65 cd02801 DUS_like_FMN Dihydrour 56.7 83 0.0018 25.4 8.2 133 39-184 65-213 (231)
66 PRK08599 coproporphyrinogen II 56.6 81 0.0018 27.9 8.6 60 105-166 164-240 (377)
67 PRK14457 ribosomal RNA large s 56.0 1.4E+02 0.0031 26.2 10.6 110 81-191 99-224 (345)
68 TIGR00126 deoC deoxyribose-pho 55.3 1.1E+02 0.0024 24.8 10.9 131 38-184 15-152 (211)
69 PF11242 DUF2774: Protein of u 55.2 18 0.00039 23.1 2.9 22 216-237 15-36 (63)
70 KOG0059 Lipid exporter ABCA1 a 53.4 89 0.0019 31.3 9.0 71 103-175 668-767 (885)
71 TIGR00538 hemN oxygen-independ 53.3 1.1E+02 0.0025 27.8 9.2 60 105-166 215-290 (455)
72 TIGR03822 AblA_like_2 lysine-2 52.9 1.5E+02 0.0033 25.6 12.3 120 39-174 120-252 (321)
73 PRK06582 coproporphyrinogen II 52.9 1.1E+02 0.0024 27.4 8.8 60 105-166 174-250 (390)
74 COG2987 HutU Urocanate hydrata 51.9 35 0.00077 31.0 5.3 151 15-186 93-268 (561)
75 COG2062 SixA Phosphohistidine 51.8 1E+02 0.0022 23.9 7.4 76 71-167 35-112 (163)
76 PRK09249 coproporphyrinogen II 51.2 1.4E+02 0.003 27.3 9.3 60 105-166 215-290 (453)
77 PRK08208 coproporphyrinogen II 51.2 1.6E+02 0.0035 26.7 9.7 60 105-166 205-275 (430)
78 cd02070 corrinoid_protein_B12- 51.1 1.3E+02 0.0027 24.1 9.4 21 39-59 9-29 (201)
79 cd03174 DRE_TIM_metallolyase D 50.9 74 0.0016 26.3 7.1 83 104-188 15-98 (265)
80 PRK12581 oxaloacetate decarbox 50.5 2.1E+02 0.0045 26.4 15.5 113 39-167 103-217 (468)
81 cd01297 D-aminoacylase D-amino 50.3 1.9E+02 0.0041 25.9 11.0 129 42-183 168-305 (415)
82 PRK07094 biotin synthase; Prov 50.1 1.7E+02 0.0036 25.2 9.5 117 38-175 70-203 (323)
83 PRK08084 DNA replication initi 49.9 93 0.002 25.5 7.4 45 125-169 97-145 (235)
84 PRK05283 deoxyribose-phosphate 49.8 59 0.0013 27.3 6.1 78 39-127 144-227 (257)
85 cd07943 DRE_TIM_HOA 4-hydroxy- 49.8 1.5E+02 0.0033 24.7 11.7 24 38-61 19-42 (263)
86 TIGR02026 BchE magnesium-proto 49.6 1.6E+02 0.0034 27.3 9.6 37 138-174 320-360 (497)
87 PRK00164 moaA molybdenum cofac 48.5 1.8E+02 0.0039 25.1 15.2 128 38-188 49-198 (331)
88 PRK06256 biotin synthase; Vali 48.2 1.8E+02 0.004 25.1 10.2 118 38-173 91-222 (336)
89 PF00697 PRAI: N-(5'phosphorib 47.5 57 0.0012 26.0 5.6 67 117-187 14-81 (197)
90 PRK09389 (R)-citramalate synth 47.4 2E+02 0.0043 26.7 9.8 26 38-63 21-46 (488)
91 PRK08195 4-hyroxy-2-oxovalerat 46.8 2E+02 0.0043 25.2 12.5 24 38-61 22-45 (337)
92 cd00959 DeoC 2-deoxyribose-5-p 46.5 1.5E+02 0.0033 23.7 10.6 131 38-184 14-151 (203)
93 cd02803 OYE_like_FMN_family Ol 45.8 2E+02 0.0042 24.8 13.6 94 82-183 206-310 (327)
94 cd00959 DeoC 2-deoxyribose-5-p 45.6 1.2E+02 0.0026 24.3 7.2 70 39-123 129-202 (203)
95 PRK09061 D-glutamate deacylase 45.1 2.6E+02 0.0056 26.0 10.6 115 43-165 171-286 (509)
96 PRK14454 ribosomal RNA large s 43.7 1.8E+02 0.0039 25.6 8.5 90 101-191 125-220 (342)
97 PLN02389 biotin synthase 43.6 2.4E+02 0.0052 25.2 10.4 136 38-191 116-269 (379)
98 PRK04390 rnpA ribonuclease P; 43.4 1.3E+02 0.0028 22.0 7.1 64 81-153 44-110 (120)
99 PRK14463 ribosomal RNA large s 43.2 2E+02 0.0043 25.4 8.7 86 102-190 128-218 (349)
100 TIGR02660 nifV_homocitr homoci 42.8 2.4E+02 0.0052 24.9 9.5 40 38-78 20-60 (365)
101 PRK03459 rnpA ribonuclease P; 42.7 1.3E+02 0.0029 22.0 6.9 63 81-153 48-114 (122)
102 COG0502 BioB Biotin synthase a 42.7 2E+02 0.0043 25.3 8.4 134 38-191 84-234 (335)
103 cd02933 OYE_like_FMN Old yello 42.3 2.4E+02 0.0051 24.7 13.7 94 86-183 220-313 (338)
104 COG1751 Uncharacterized conser 41.9 1.1E+02 0.0023 23.7 5.8 73 39-124 12-85 (186)
105 COG3623 SgaU Putative L-xylulo 41.9 50 0.0011 27.4 4.3 75 15-91 65-155 (287)
106 COG2256 MGS1 ATPase related to 41.8 1.5E+02 0.0032 26.9 7.5 104 44-166 36-143 (436)
107 PRK01313 rnpA ribonuclease P; 41.5 1.5E+02 0.0032 22.1 6.9 62 81-152 47-113 (129)
108 cd03174 DRE_TIM_metallolyase D 41.3 2E+02 0.0043 23.6 12.0 26 38-63 16-41 (265)
109 COG0274 DeoC Deoxyribose-phosp 41.2 1.8E+02 0.0038 24.0 7.4 75 39-125 138-213 (228)
110 PRK11858 aksA trans-homoaconit 40.8 2.6E+02 0.0057 24.8 9.5 25 38-62 23-47 (378)
111 PRK03031 rnpA ribonuclease P; 40.3 1.4E+02 0.0031 21.7 6.7 64 81-153 47-114 (122)
112 TIGR00973 leuA_bact 2-isopropy 40.2 3.1E+02 0.0067 25.5 10.3 136 38-175 20-183 (494)
113 cd07944 DRE_TIM_HOA_like 4-hyd 40.0 2.3E+02 0.0049 23.8 13.6 25 38-62 17-41 (266)
114 COG0135 TrpF Phosphoribosylant 39.8 86 0.0019 25.5 5.4 97 39-165 11-111 (208)
115 TIGR01278 DPOR_BchB light-inde 39.7 3.1E+02 0.0068 25.5 9.9 101 69-183 69-194 (511)
116 PRK11815 tRNA-dihydrouridine s 39.7 2.6E+02 0.0056 24.4 11.4 133 39-183 75-232 (333)
117 cd08590 PI-PLCc_Rv2075c_like C 39.5 1.4E+02 0.0031 25.2 7.0 18 142-159 150-167 (267)
118 PRK05588 histidinol-phosphatas 39.5 2.2E+02 0.0047 23.5 9.8 79 41-135 16-103 (255)
119 PRK00499 rnpA ribonuclease P; 39.2 1.4E+02 0.0031 21.4 6.8 63 81-153 38-104 (114)
120 PF01118 Semialdhyde_dh: Semia 39.1 37 0.0008 24.6 3.0 27 39-65 75-101 (121)
121 PRK08255 salicylyl-CoA 5-hydro 38.4 4E+02 0.0087 26.3 13.4 94 82-183 616-716 (765)
122 PF14502 HTH_41: Helix-turn-he 38.4 38 0.00083 20.5 2.4 30 214-243 6-37 (48)
123 TIGR02666 moaA molybdenum cofa 38.0 2.7E+02 0.0058 24.1 15.4 129 38-188 43-193 (334)
124 TIGR00539 hemN_rel putative ox 37.9 2.8E+02 0.0061 24.3 9.0 60 105-166 164-236 (360)
125 KOG2499 Beta-N-acetylhexosamin 37.6 31 0.00067 31.6 2.8 47 16-66 228-278 (542)
126 TIGR03699 mena_SCO4550 menaqui 37.2 2.8E+02 0.006 24.1 9.2 121 38-172 72-215 (340)
127 COG0820 Predicted Fe-S-cluster 36.5 3E+02 0.0066 24.3 9.2 121 81-201 99-234 (349)
128 TIGR00035 asp_race aspartate r 36.5 2E+02 0.0043 23.4 7.3 63 105-168 14-88 (229)
129 PRK00208 thiG thiazole synthas 36.0 2.6E+02 0.0057 23.4 11.9 76 104-181 72-148 (250)
130 cd07939 DRE_TIM_NifV Streptomy 35.9 2.6E+02 0.0055 23.3 10.0 40 38-78 17-57 (259)
131 PF11020 DUF2610: Domain of un 35.7 1E+02 0.0022 20.9 4.3 27 209-235 49-75 (82)
132 PRK01903 rnpA ribonuclease P; 35.4 1.9E+02 0.0041 21.6 6.7 48 105-152 65-128 (133)
133 PRK14465 ribosomal RNA large s 35.3 3.1E+02 0.0068 24.1 12.9 119 82-200 104-233 (342)
134 KOG2264 Exostosin EXT1L [Signa 35.1 1E+02 0.0022 29.0 5.7 57 67-139 632-690 (907)
135 PF01527 HTH_Tnp_1: Transposas 35.0 22 0.00048 23.2 1.2 40 38-79 7-46 (76)
136 cd04728 ThiG Thiazole synthase 34.9 2.7E+02 0.0059 23.3 12.4 76 104-181 72-148 (248)
137 TIGR00742 yjbN tRNA dihydrouri 34.8 3.1E+02 0.0066 23.8 11.9 133 39-183 65-222 (318)
138 cd00668 Ile_Leu_Val_MetRS_core 34.5 66 0.0014 27.6 4.4 49 107-158 81-131 (312)
139 PF00072 Response_reg: Respons 34.4 1.2E+02 0.0026 20.7 5.1 59 124-185 42-102 (112)
140 TIGR03217 4OH_2_O_val_ald 4-hy 34.0 3.2E+02 0.007 23.9 12.6 24 38-61 21-44 (333)
141 PRK05406 LamB/YcsF family prot 33.9 1.8E+02 0.0039 24.3 6.5 81 24-121 13-95 (246)
142 cd05007 SIS_Etherase N-acetylm 33.6 2.8E+02 0.0062 23.1 10.7 56 115-173 108-163 (257)
143 COG2896 MoaA Molybdenum cofact 33.1 3.3E+02 0.0072 23.8 9.2 114 38-175 43-175 (322)
144 KOG1892 Actin filament-binding 32.8 29 0.00062 34.7 1.9 84 108-191 7-122 (1629)
145 cd04747 OYE_like_5_FMN Old yel 32.7 3.5E+02 0.0077 23.9 13.5 98 82-183 209-327 (361)
146 cd02932 OYE_YqiM_FMN Old yello 32.6 3.3E+02 0.0072 23.6 13.2 95 81-183 218-319 (336)
147 COG4464 CapC Capsular polysacc 32.5 1.8E+02 0.0039 24.0 6.0 41 38-78 17-60 (254)
148 cd04735 OYE_like_4_FMN Old yel 32.5 3.5E+02 0.0075 23.8 12.5 93 83-182 214-311 (353)
149 PRK15108 biotin synthase; Prov 32.5 3.5E+02 0.0075 23.8 10.7 105 38-158 76-188 (345)
150 PRK12569 hypothetical protein; 32.3 2.1E+02 0.0046 23.9 6.7 83 24-121 14-98 (245)
151 PRK05718 keto-hydroxyglutarate 31.9 2.8E+02 0.0061 22.5 7.7 51 39-91 25-75 (212)
152 PF04476 DUF556: Protein of un 31.6 3E+02 0.0066 22.8 8.7 132 39-186 9-153 (235)
153 PRK12570 N-acetylmuramic acid- 31.4 3.4E+02 0.0073 23.3 9.1 57 114-173 116-172 (296)
154 PRK05904 coproporphyrinogen II 31.0 3.7E+02 0.008 23.6 9.2 60 105-166 167-238 (353)
155 cd04734 OYE_like_3_FMN Old yel 30.8 3.7E+02 0.0079 23.5 13.9 95 81-183 205-314 (343)
156 TIGR03597 GTPase_YqeH ribosome 30.7 3.8E+02 0.0082 23.6 11.0 119 38-168 48-169 (360)
157 KOG0173 20S proteasome, regula 30.4 51 0.0011 27.4 2.7 23 33-55 178-200 (271)
158 PF01244 Peptidase_M19: Membra 30.3 79 0.0017 27.5 4.1 108 41-164 160-272 (320)
159 COG0145 HyuA N-methylhydantoin 30.2 5.2E+02 0.011 25.2 10.3 99 38-138 136-245 (674)
160 COG4555 NatA ABC-type Na+ tran 30.2 3E+02 0.0066 22.6 7.0 71 103-175 103-202 (245)
161 cd01301 rDP_like renal dipepti 30.0 3.6E+02 0.0079 23.3 8.4 108 41-164 154-264 (309)
162 PRK12558 glutamyl-tRNA synthet 30.0 1.2E+02 0.0027 27.7 5.4 51 105-161 48-98 (445)
163 PRK05339 PEP synthetase regula 29.9 3.5E+02 0.0075 23.0 7.8 74 39-129 14-90 (269)
164 PRK00915 2-isopropylmalate syn 29.9 4.7E+02 0.01 24.4 10.9 25 38-62 23-47 (513)
165 PF01904 DUF72: Protein of unk 29.8 3.1E+02 0.0067 22.4 7.6 122 55-181 19-146 (230)
166 PF10171 DUF2366: Uncharacteri 29.8 1.1E+02 0.0024 24.1 4.4 40 126-165 78-117 (173)
167 PRK10605 N-ethylmaleimide redu 29.7 4E+02 0.0086 23.6 14.1 94 86-183 227-320 (362)
168 cd00739 DHPS DHPS subgroup of 29.7 3.4E+02 0.0073 22.7 9.2 75 105-181 21-101 (257)
169 PLN02775 Probable dihydrodipic 29.5 2.3E+02 0.0051 24.2 6.7 58 114-175 68-125 (286)
170 cd03316 MR_like Mandelate race 29.2 3.8E+02 0.0083 23.3 12.4 128 39-187 139-273 (357)
171 smart00148 PLCXc Phospholipase 29.2 2.2E+02 0.0047 21.2 5.9 48 44-91 31-96 (135)
172 COG1151 6Fe-6S prismane cluste 28.8 4.4E+02 0.0096 24.9 8.7 51 108-161 360-413 (576)
173 cd00945 Aldolase_Class_I Class 28.7 2.7E+02 0.0059 21.4 9.0 98 39-153 11-109 (201)
174 COG0647 NagD Predicted sugar p 28.7 2.9E+02 0.0063 23.4 7.1 115 39-161 25-154 (269)
175 PRK00396 rnpA ribonuclease P; 28.6 2.5E+02 0.0054 20.9 6.6 63 81-153 46-112 (130)
176 cd00405 PRAI Phosphoribosylant 28.4 2.1E+02 0.0045 22.7 6.1 65 119-186 16-82 (203)
177 PRK04820 rnpA ribonuclease P; 28.4 2.7E+02 0.0058 21.2 7.0 66 81-155 48-116 (145)
178 PRK10508 hypothetical protein; 28.2 96 0.0021 27.1 4.3 42 105-151 286-327 (333)
179 PLN02951 Molybderin biosynthes 28.1 4.3E+02 0.0093 23.5 12.1 128 38-189 90-240 (373)
180 PRK05692 hydroxymethylglutaryl 27.9 1.7E+02 0.0036 25.0 5.7 69 105-175 23-91 (287)
181 TIGR00188 rnpA ribonuclease P 27.7 2.2E+02 0.0048 20.0 6.4 61 81-151 41-104 (105)
182 cd04731 HisF The cyclase subun 27.2 3.5E+02 0.0075 22.1 9.8 65 116-183 156-222 (243)
183 PRK14461 ribosomal RNA large s 27.1 4.6E+02 0.0099 23.5 9.3 61 129-190 232-319 (371)
184 COG0710 AroD 3-dehydroquinate 27.1 3.6E+02 0.0079 22.3 14.9 130 39-173 12-166 (231)
185 COG2179 Predicted hydrolase of 26.9 3.2E+02 0.0068 21.5 6.7 77 34-133 42-118 (175)
186 cd00814 MetRS_core catalytic c 26.9 1E+02 0.0022 26.6 4.2 47 107-156 68-114 (319)
187 PRK14466 ribosomal RNA large s 26.9 3.9E+02 0.0084 23.6 7.8 97 101-201 127-229 (345)
188 cd08620 PI-PLCXDc_like_1 Catal 26.9 3.6E+02 0.0079 23.0 7.4 19 46-64 35-53 (281)
189 COG0646 MetH Methionine syntha 26.6 4.2E+02 0.0092 22.9 10.8 116 39-154 51-185 (311)
190 PF01890 CbiG_C: Cobalamin syn 26.5 1.6E+02 0.0035 21.5 4.7 64 103-173 10-73 (121)
191 PRK08609 hypothetical protein; 26.5 5.6E+02 0.012 24.3 13.3 105 43-163 351-467 (570)
192 PF10668 Phage_terminase: Phag 26.4 63 0.0014 20.6 2.1 17 216-232 24-40 (60)
193 PRK04930 glutathione-regulated 26.1 2.7E+02 0.0058 22.1 6.2 34 104-137 126-159 (184)
194 cd08557 PI-PLCc_bacteria_like 26.0 2E+02 0.0042 23.8 5.7 20 45-64 41-60 (271)
195 COG3607 Predicted lactoylgluta 25.9 97 0.0021 23.0 3.2 28 39-66 81-108 (133)
196 PRK14468 ribosomal RNA large s 25.8 4.6E+02 0.0099 23.0 11.1 109 82-190 92-214 (343)
197 PF00388 PI-PLC-X: Phosphatidy 25.8 50 0.0011 24.8 1.9 20 45-64 30-49 (146)
198 COG1131 CcmA ABC-type multidru 25.8 1.9E+02 0.0042 24.6 5.7 61 111-174 142-205 (293)
199 TIGR03586 PseI pseudaminic aci 25.7 4.5E+02 0.0099 23.0 11.9 131 38-187 74-225 (327)
200 PF05049 IIGP: Interferon-indu 25.5 2.4E+02 0.0052 25.2 6.3 116 52-171 109-239 (376)
201 PF11590 DNAPolymera_Pol: DNA 25.4 59 0.0013 18.8 1.6 32 20-52 7-38 (41)
202 TIGR01108 oadA oxaloacetate de 25.3 6E+02 0.013 24.2 13.1 25 37-61 17-41 (582)
203 COG3287 Uncharacterized conser 25.2 1.1E+02 0.0023 27.4 4.0 54 109-164 14-67 (379)
204 TIGR01862 N2-ase-Ialpha nitrog 25.2 4.9E+02 0.011 23.7 8.5 106 60-181 95-221 (443)
205 PRK12323 DNA polymerase III su 25.1 6.2E+02 0.013 24.7 9.2 80 105-190 104-185 (700)
206 cd01965 Nitrogenase_MoFe_beta_ 25.1 4.9E+02 0.011 23.5 8.5 111 60-183 59-188 (428)
207 PF13518 HTH_28: Helix-turn-he 25.1 91 0.002 18.3 2.7 22 216-238 14-35 (52)
208 PF13521 AAA_28: AAA domain; P 24.9 1.9E+02 0.0042 21.7 5.1 82 46-128 66-155 (163)
209 PRK10200 putative racemase; Pr 24.8 3.7E+02 0.0079 22.0 7.0 63 105-168 14-88 (230)
210 PF01680 SOR_SNZ: SOR/SNZ fami 24.6 39 0.00084 26.8 1.1 15 116-130 87-101 (208)
211 TIGR01428 HAD_type_II 2-haloal 24.5 1.2E+02 0.0027 23.6 4.1 64 110-175 61-128 (198)
212 COG0218 Predicted GTPase [Gene 24.4 3.8E+02 0.0083 21.6 8.0 98 43-153 93-198 (200)
213 PF15221 LEP503: Lens epitheli 24.3 39 0.00085 20.9 0.8 19 10-28 17-35 (61)
214 cd01967 Nitrogenase_MoFe_alpha 24.0 5.1E+02 0.011 23.0 9.4 106 61-182 66-191 (406)
215 PF01476 LysM: LysM domain; I 24.0 84 0.0018 17.7 2.3 18 215-232 7-24 (44)
216 cd03770 SR_TndX_transposase Se 24.0 1.4E+02 0.003 22.2 4.0 43 111-153 54-97 (140)
217 PRK11893 methionyl-tRNA synthe 23.9 1.2E+02 0.0026 28.0 4.4 49 107-158 69-117 (511)
218 PRK07027 cobalamin biosynthesi 23.8 1.5E+02 0.0033 21.8 4.1 36 103-138 12-47 (126)
219 PLN03233 putative glutamate-tR 23.8 4.3E+02 0.0093 24.8 7.8 58 105-170 57-114 (523)
220 TIGR02668 moaA_archaeal probab 23.7 4.5E+02 0.0098 22.2 13.2 128 38-188 40-188 (302)
221 COG4152 ABC-type uncharacteriz 23.6 4.6E+02 0.01 22.3 8.5 69 105-175 102-199 (300)
222 COG0042 tRNA-dihydrouridine sy 23.6 4.9E+02 0.011 22.6 10.2 132 39-183 77-227 (323)
223 TIGR02109 PQQ_syn_pqqE coenzym 23.4 5E+02 0.011 22.6 8.3 115 38-175 37-168 (358)
224 PRK01732 rnpA ribonuclease P; 23.3 2.9E+02 0.0063 19.9 6.7 63 81-153 45-111 (114)
225 PRK11267 biopolymer transport 23.2 2.2E+02 0.0047 21.3 5.0 55 105-164 81-135 (141)
226 PLN00200 argininosuccinate syn 23.2 5.6E+02 0.012 23.2 10.7 111 41-175 45-165 (404)
227 PLN02907 glutamate-tRNA ligase 23.2 3.8E+02 0.0083 26.3 7.7 61 103-171 257-317 (722)
228 PRK06233 hypothetical protein; 23.0 2.1E+02 0.0046 25.4 5.6 110 44-165 174-308 (372)
229 PRK05283 deoxyribose-phosphate 22.9 4.6E+02 0.01 22.1 10.4 102 38-152 23-126 (257)
230 PRK14040 oxaloacetate decarbox 22.9 6.8E+02 0.015 24.0 14.8 24 37-60 23-46 (593)
231 cd00818 IleRS_core catalytic c 22.9 1E+02 0.0022 26.9 3.5 46 109-157 88-135 (338)
232 PRK01492 rnpA ribonuclease P; 22.8 3.1E+02 0.0066 19.9 6.7 61 82-151 47-114 (118)
233 PF01207 Dus: Dihydrouridine s 22.7 2.9E+02 0.0063 23.8 6.3 133 39-183 64-212 (309)
234 cd00812 LeuRS_core catalytic c 22.3 1.4E+02 0.0029 25.8 4.1 49 107-156 68-116 (314)
235 CHL00076 chlB photochlorophyll 22.2 6.5E+02 0.014 23.5 9.6 100 69-181 69-197 (513)
236 PRK00260 cysS cysteinyl-tRNA s 22.1 2.1E+02 0.0045 26.3 5.5 46 108-157 91-136 (463)
237 PRK11024 colicin uptake protei 22.1 2.1E+02 0.0046 21.3 4.7 54 105-163 85-138 (141)
238 PTZ00402 glutamyl-tRNA synthet 22.0 5.2E+02 0.011 24.8 8.0 61 104-172 97-158 (601)
239 PRK08508 biotin synthase; Prov 21.9 4.9E+02 0.011 21.9 10.5 53 138-191 134-191 (279)
240 TIGR03569 NeuB_NnaB N-acetylne 21.9 5.4E+02 0.012 22.5 12.4 133 38-187 73-226 (329)
241 COG0825 AccA Acetyl-CoA carbox 21.8 91 0.002 26.8 2.8 38 41-78 137-178 (317)
242 PRK04820 rnpA ribonuclease P; 21.7 3.7E+02 0.0079 20.4 5.9 31 84-123 87-117 (145)
243 PF09391 DUF2000: Protein of u 21.7 2.7E+02 0.0059 20.8 5.1 47 39-85 62-108 (133)
244 PRK06740 histidinol-phosphatas 21.7 3E+02 0.0066 24.0 6.2 24 40-63 60-83 (331)
245 PF00825 Ribonuclease_P: Ribon 21.6 2.6E+02 0.0057 19.8 4.9 48 105-152 57-108 (111)
246 PHA02820 phospholipase-D-like 21.4 6.2E+02 0.013 23.0 8.6 45 109-154 257-301 (424)
247 PF13467 RHH_4: Ribbon-helix-h 21.4 1.5E+02 0.0033 19.3 3.2 28 212-239 21-48 (67)
248 cd01973 Nitrogenase_VFe_beta_l 21.2 6.4E+02 0.014 23.1 10.4 115 59-183 63-194 (454)
249 PRK14460 ribosomal RNA large s 21.1 5.8E+02 0.013 22.5 9.2 89 101-190 126-225 (354)
250 COG3877 Uncharacterized protei 21.1 3.2E+02 0.007 19.6 5.3 44 105-157 69-112 (122)
251 PRK04156 gltX glutamyl-tRNA sy 21.0 4.2E+02 0.0091 25.2 7.2 57 107-171 151-207 (567)
252 COG0646 MetH Methionine syntha 20.9 4.4E+02 0.0096 22.8 6.7 36 139-174 271-307 (311)
253 PRK14461 ribosomal RNA large s 20.9 6.1E+02 0.013 22.7 11.3 121 81-201 105-250 (371)
254 PF10007 DUF2250: Uncharacteri 20.9 76 0.0017 22.1 1.8 50 112-164 10-59 (92)
255 KOG4175 Tryptophan synthase al 20.9 4.7E+02 0.01 21.3 7.4 70 38-122 132-202 (268)
256 COG4381 Mu-like prophage prote 20.8 2.6E+02 0.0057 20.6 4.6 27 228-254 81-107 (135)
257 PF01402 RHH_1: Ribbon-helix-h 20.7 1.7E+02 0.0036 16.1 3.9 21 212-232 9-29 (39)
258 PF02679 ComA: (2R)-phospho-3- 20.3 2.2E+02 0.0048 23.8 4.8 84 42-133 85-168 (244)
259 PRK14536 cysS cysteinyl-tRNA s 20.2 2.7E+02 0.0058 25.9 5.7 46 108-157 101-146 (490)
260 PLN02923 xylose isomerase 20.2 4.2E+02 0.0091 24.2 6.6 92 69-164 72-186 (478)
261 TIGR03278 methan_mark_10 putat 20.1 6.5E+02 0.014 22.7 8.4 84 105-190 54-141 (404)
262 TIGR00433 bioB biotin syntheta 20.1 5.2E+02 0.011 21.6 11.0 120 38-174 62-194 (296)
263 PRK05473 hypothetical protein; 20.1 2.6E+02 0.0056 19.2 4.2 36 41-90 21-57 (86)
264 KOG3157 Proline synthetase co- 20.1 4.9E+02 0.011 21.3 7.8 73 43-125 42-124 (244)
265 cd07938 DRE_TIM_HMGL 3-hydroxy 20.0 5.4E+02 0.012 21.7 11.0 25 38-62 17-41 (274)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=5.8e-60 Score=405.76 Aligned_cols=247 Identities=44% Similarity=0.661 Sum_probs=217.2
Q ss_pred cceeeeCCCCcccccceecccccCCCCCCCCCHHHHHHHHHHHHHcCCCceecccccCCCchHHHHHHHHhcCC-CCceE
Q 025312 8 VPRVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLP-REKIQ 86 (255)
Q Consensus 8 m~~~~lg~~g~~vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~-R~~~~ 86 (255)
|++|+||++|++||+||||||.+|+.+. ..+++++.++|++|+|+||||||||+.||.|.||+++|++|+... |++++
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~~~-~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~~~Rd~vv 79 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGDTD-DEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKERGRRDKVV 79 (316)
T ss_pred CCceecCCCCceecceeeeccccCCCCC-chhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhccCCCCeEE
Confidence 7899999999999999999999987422 224557788999999999999999999999999999999999744 89999
Q ss_pred EEecccccccCcccc-ccCCCHHHHHHHHHHHHhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHHhCCcceEEcCCCC
Q 025312 87 VATKFGIAGIGVAGV-IVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEAS 165 (255)
Q Consensus 87 i~tK~~~~~~~~~~~-~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn~~ 165 (255)
|+||++....++... ..+.++++|+++++.||+||||||||+|++|+||+..+.++++++|.+|+++|+||+||+||++
T Consensus 80 IaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p~~e~~~aL~~l~~~G~ir~iG~S~~~ 159 (316)
T COG0667 80 IATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETPIEETLEALDELVREGKIRYIGVSNYS 159 (316)
T ss_pred EEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCC
Confidence 999998766422112 3678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc-CCceEeeccCCcCCcChhhchhhhcc--------ccC-------C--------------------Chhh
Q 025312 166 PGTIRRAHAV-HPITAVQMEWSLWTRDIEEEIIPLCR--------FKG-------E--------------------NLDR 209 (255)
Q Consensus 166 ~~~l~~~~~~-~~~~~~q~~~n~~~~~~~~~~~~~~~--------~~~-------~--------------------~~~~ 209 (255)
.+++.+++.. .+++++|.+||+++++.+.+++++|+ |+| + ..++
T Consensus 160 ~~~i~~a~~~~~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~G~Ltgk~~~~~~~~r~~~~~~~~~~~~~~ 239 (316)
T COG0667 160 AEQIAEALAVAAPIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLASGLLTGKYLPGPEGSRASELPRFQRELTER 239 (316)
T ss_pred HHHHHHHHHhcCCceeecccCccccccchhHHHHHHHHcCCeEEEecCccccccCCCcCCCcchhhccccccchhhhhHH
Confidence 9999999998 59999999999999887777999999 221 0 1122
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEEecCCCCCCCC
Q 025312 210 NKSIYFRIGNLAKKYNCTSAQLALAWVLGQGDDVVPIPGNFFLSSL 255 (255)
Q Consensus 210 ~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~vi~g~~~~~~L 255 (255)
.......++.+|+++|+|++|+||+|++++|.|++||+|+++++||
T Consensus 240 ~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~Ga~~~~qL 285 (316)
T COG0667 240 GLAILRALEELAKELGATPAQVALAWVLAQPGVTSPIVGASKAEQL 285 (316)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeecCCCHHHH
Confidence 2345567999999999999999999999999999999999999986
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=1.1e-56 Score=378.92 Aligned_cols=250 Identities=45% Similarity=0.712 Sum_probs=221.0
Q ss_pred ccccccceeeeCCCCcccccceecccccCCCCCCCCCHHHHHHHHHHHHHcCCCceecccccCCCchHHHHHHHHhc--C
Q 025312 3 EEKHQVPRVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ--L 80 (255)
Q Consensus 3 ~~~~~m~~~~lg~~g~~vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~--~ 80 (255)
.+...|+++++|++|++||++|||+|.+.. |+...+++++++++++|+|+|+||||||++||.|.||.++|++|++ .
T Consensus 7 ~~~~~~~~~~lg~~gl~Vs~lglG~m~~~~-~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~~~ 85 (336)
T KOG1575|consen 7 STELGMLRRKLGNSGLKVSPLGLGCMGWTT-FGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSRGW 85 (336)
T ss_pred cchhcceeeeccCCCceecceeecceeeec-cccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhcCC
Confidence 344579999999999999999999984443 5544799999999999999999999999999999999999999998 5
Q ss_pred CCCceEEEecccccccCccccccCCCHHHHHHHHHHHHhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHHhCCcceEE
Q 025312 81 PREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIG 160 (255)
Q Consensus 81 ~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~vr~iG 160 (255)
+|++++|+||++.... .......++..+.+.++.|+++||++|||+|++||+|+..+.++++++|.+++++|+||+||
T Consensus 86 ~R~~vviaTK~~~~~~--~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~piee~m~aL~~lve~Gki~yiG 163 (336)
T KOG1575|consen 86 RRDKVVIATKFGFDYG--GETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVPIEETMRALTDLVEQGKIRYWG 163 (336)
T ss_pred cCCcEEEEEEEeccCC--CcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCCHHHHHHHHHHHHhcCceEEEE
Confidence 7999999999986652 22356688999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHhhcCC--ceEeeccCCcCCcChh-hchhhhcc--------ccCC------------------------
Q 025312 161 LSEASPGTIRRAHAVHP--ITAVQMEWSLWTRDIE-EEIIPLCR--------FKGE------------------------ 205 (255)
Q Consensus 161 vsn~~~~~l~~~~~~~~--~~~~q~~~n~~~~~~~-~~~~~~~~--------~~~~------------------------ 205 (255)
+|+++.+++.+++...+ |.++|++||++.|+.+ .+++++|+ |+|-
T Consensus 164 lSe~sa~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk~~~~e~~~~~~~~~~~ 243 (336)
T KOG1575|consen 164 LSEWSAEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGKYKLGEDSRNGDKRFQF 243 (336)
T ss_pred eccCCHHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceeccCcccccccccccccccc
Confidence 99999999999998876 9999999999999955 56999999 2220
Q ss_pred -----Ch---hhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEEecCCCCCCCC
Q 025312 206 -----NL---DRNKSIYFRIGNLAKKYNCTSAQLALAWVLGQGDDVVPIPGNFFLSSL 255 (255)
Q Consensus 206 -----~~---~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~vi~g~~~~~~L 255 (255)
.. ........++.++|+++|+|++|+||+|+++++.|++||||+++++||
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~ve~l 301 (336)
T KOG1575|consen 244 LGLSPQTEEGDKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASKIEQL 301 (336)
T ss_pred cccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCcHHHH
Confidence 00 123345678999999999999999999999999999999999999885
No 3
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=8.1e-57 Score=373.08 Aligned_cols=225 Identities=31% Similarity=0.490 Sum_probs=195.8
Q ss_pred ccceeeeCCCCcccccceecccccCCCCCCCCCHHHHHHHHHHHHHcCCCceecccccCCCchHHHHHHHHhc--CCCCc
Q 025312 7 QVPRVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ--LPREK 84 (255)
Q Consensus 7 ~m~~~~lg~~g~~vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~--~~R~~ 84 (255)
.+.+.++ ++|.+||.||||||++++ .+.+.+.+.+|++.|||+||||..|| ||+.+|++|++ .+|++
T Consensus 2 ~~~~~~l-~~g~~iP~iGlGt~~~~~-------~~~~~~av~~Al~~Gyr~IDTA~~Yg---nE~~VG~aI~~s~v~Ree 70 (280)
T COG0656 2 MKTKVTL-NNGVEIPAIGLGTWQIGD-------DEWAVRAVRAALELGYRLIDTAEIYG---NEEEVGEAIKESGVPREE 70 (280)
T ss_pred CCceeec-CCCCcccCcceEeeecCC-------chhHHHHHHHHHHhCcceEecHhHhc---CHHHHHHHHHhcCCCHHH
Confidence 3455677 677889999999999854 23389999999999999999999999 89999999998 68999
Q ss_pred eEEEecccccccCccccccCCCHHHHHHHHHHHHhHcCCCcceEEecccCCCC--CCHHHHHHHHHHHHHhCCcceEEcC
Q 025312 85 IQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS--VPIEETIGEMKKLVEEGKIKYIGLS 162 (255)
Q Consensus 85 ~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~--~~~~~~~~~l~~l~~~G~vr~iGvs 162 (255)
+||+||+|... .+++.+.+++++||++||+||+|||+||||.+. ..++|+|++|++++++|+||+||||
T Consensus 71 lFittKvw~~~---------~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ir~IGVS 141 (280)
T COG0656 71 LFITTKVWPSD---------LGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLIRAIGVS 141 (280)
T ss_pred eEEEeecCCcc---------CCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCccEEEee
Confidence 99999997653 678899999999999999999999999999763 2378999999999999999999999
Q ss_pred CCCHHHHHHHhhc--CCceEeeccCCcCCcChhhchhhhcc--------ccCCChhhhHHHHHHHHHHHHHcCCCHHHHH
Q 025312 163 EASPGTIRRAHAV--HPITAVQMEWSLWTRDIEEEIIPLCR--------FKGENLDRNKSIYFRIGNLAKKYNCTSAQLA 232 (255)
Q Consensus 163 n~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~a 232 (255)
||+.++++++++. ..|++||++||++.++. +++++|+ |+|-.-.......+.+.+||++||.|++|++
T Consensus 142 NF~~~~L~~l~~~~~~~p~~NQIe~hp~~~q~--el~~~~~~~gI~v~AysPL~~g~~l~~~~~l~~Ia~k~g~t~AQv~ 219 (280)
T COG0656 142 NFGVEHLEELLSLAKVKPAVNQIEYHPYLRQP--ELLPFCQRHGIAVEAYSPLAKGGKLLDNPVLAEIAKKYGKTPAQVA 219 (280)
T ss_pred CCCHHHHHHHHHhcCCCCceEEEEeccCCCcH--HHHHHHHHcCCEEEEECCcccccccccChHHHHHHHHhCCCHHHHH
Confidence 9999999999876 55899999999999995 4999999 6662211112334689999999999999999
Q ss_pred HHHHHhCCCCeEEecCCCCCCCC
Q 025312 233 LAWVLGQGDDVVPIPGNFFLSSL 255 (255)
Q Consensus 233 l~~~l~~~~v~~vi~g~~~~~~L 255 (255)
|||++++|. +|||.+++++|+
T Consensus 220 L~W~i~~gv--~~Ipks~~~~ri 240 (280)
T COG0656 220 LRWHIQRGV--IVIPKSTTPERI 240 (280)
T ss_pred HHHHHhCCc--EEecCCCCHHHH
Confidence 999999996 999999999874
No 4
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=4.7e-54 Score=375.22 Aligned_cols=246 Identities=26% Similarity=0.431 Sum_probs=206.2
Q ss_pred cccceeeeCCCCcccccceecccccCCCCCCCCCHHHHHHHHHHHHHcCCCceecccccCC--CchHHHHHHHHhc---C
Q 025312 6 HQVPRVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQ--NANEVLLGKALKQ---L 80 (255)
Q Consensus 6 ~~m~~~~lg~~g~~vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~--g~se~~lg~~l~~---~ 80 (255)
..|++|+||++|++||+||||||+. +|...+.+++.++|+.|+++|||+||||+.||+ |.||+.+|++|++ .
T Consensus 11 ~~m~~r~lg~tg~~vs~lglG~~~~---~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~~~ 87 (346)
T PRK09912 11 GQMQYRYCGKSGLRLPALSLGLWHN---FGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAA 87 (346)
T ss_pred CCcceeecCCCCcccccccccCccc---cCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhcccC
Confidence 3699999999999999999999972 332335678899999999999999999999995 8899999999986 2
Q ss_pred CCCceEEEecccccccCccccccCCCHHHHHHHHHHHHhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHHhCCcceEE
Q 025312 81 PREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIG 160 (255)
Q Consensus 81 ~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~vr~iG 160 (255)
+|++++|+||++.....+ ....+.+++.+++++++||+|||+||||+|++|+|++..+++++|++|++|+++|+||+||
T Consensus 88 ~Rd~~~I~TK~g~~~~~~-~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~GkIr~iG 166 (346)
T PRK09912 88 YRDELIISTKAGYDMWPG-PYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVG 166 (346)
T ss_pred CCCeEEEEEEecccCCCC-cCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEE
Confidence 699999999997531111 1123468999999999999999999999999999998888999999999999999999999
Q ss_pred cCCCCHHHHHHHhhc-----CCceEeeccCCcCCcChh-hchhhhcc--------ccC---CCh----------------
Q 025312 161 LSEASPGTIRRAHAV-----HPITAVQMEWSLWTRDIE-EEIIPLCR--------FKG---ENL---------------- 207 (255)
Q Consensus 161 vsn~~~~~l~~~~~~-----~~~~~~q~~~n~~~~~~~-~~~~~~~~--------~~~---~~~---------------- 207 (255)
||||++++++++.+. .+++++|++||++++..+ .+++++|+ |+| +.+
T Consensus 167 vSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt~~~~~~~~~~~~~~~ 246 (346)
T PRK09912 167 ISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGKYLNGIPQDSRMHR 246 (346)
T ss_pred ecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCccccCCCCCCCCCCccccc
Confidence 999999988765542 477899999999998654 46999998 211 000
Q ss_pred --------------hhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEEecCCCCCCCC
Q 025312 208 --------------DRNKSIYFRIGNLAKKYNCTSAQLALAWVLGQGDDVVPIPGNFFLSSL 255 (255)
Q Consensus 208 --------------~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~vi~g~~~~~~L 255 (255)
.......+.+.++|+++|+|++|+||+|++++|.|++||+|+++++||
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~~~ql 308 (346)
T PRK09912 247 EGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGASRAEQL 308 (346)
T ss_pred cccchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCCCCHHHH
Confidence 011223467899999999999999999999999999999999999985
No 5
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=3.4e-54 Score=372.36 Aligned_cols=241 Identities=29% Similarity=0.442 Sum_probs=203.7
Q ss_pred eeeeCCCCcccccceecccccCCCCCCCCCHHHHHHHHHHHHHcCCCceecccccCCCchHHHHHHHHhc--CCCCceEE
Q 025312 10 RVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ--LPREKIQV 87 (255)
Q Consensus 10 ~~~lg~~g~~vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~--~~R~~~~i 87 (255)
||+||++|++||+||||||++ ||...+++++.++|+.|+++|||+||||+.||.|.||+++|++|++ .+|++++|
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~---~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~~~R~~~~i 77 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVT---FGGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKKGWRRSSYVI 77 (317)
T ss_pred CcccCCCCCeecceeecCCcc---CCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhcCCCcccEEE
Confidence 578999999999999999974 2333478899999999999999999999999999999999999986 26999999
Q ss_pred EecccccccCccccccCCCHHHHHHHHHHHHhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHHhCCcceEEcCCCCHH
Q 025312 88 ATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPG 167 (255)
Q Consensus 88 ~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn~~~~ 167 (255)
+||++..... ....+.+++.+++++++||++||+||||+|++|||++..+++++|++|++|+++|+||+||||||+++
T Consensus 78 aTK~~~~~~~--~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~~~e~~~aL~~l~~~G~ir~iGvSn~~~~ 155 (317)
T TIGR01293 78 TTKIFWGGKA--ETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTPMEETVRAMTYVINQGMAMYWGTSRWSSM 155 (317)
T ss_pred EeeeccCCCC--CCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCCHH
Confidence 9998642111 01134689999999999999999999999999999988889999999999999999999999999999
Q ss_pred HHHHHhhc------CCceEeeccCCcCCcCh-hhchhhhcc--------ccC---C----Ch----h-------------
Q 025312 168 TIRRAHAV------HPITAVQMEWSLWTRDI-EEEIIPLCR--------FKG---E----NL----D------------- 208 (255)
Q Consensus 168 ~l~~~~~~------~~~~~~q~~~n~~~~~~-~~~~~~~~~--------~~~---~----~~----~------------- 208 (255)
++.++... .+++++|++||+++++. ++.++++|+ |+| + .+ +
T Consensus 156 ~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Ltg~~~~~~~~~~~~~~~~~~~~ 235 (317)
T TIGR01293 156 EIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVSGKYDSGIPPYSRATLKGYQWL 235 (317)
T ss_pred HHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccCCCCCCCCCCcccccccccchh
Confidence 98776432 47889999999999874 567888888 222 0 00 0
Q ss_pred ----------hhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEEecCCCCCCCC
Q 025312 209 ----------RNKSIYFRIGNLAKKYNCTSAQLALAWVLGQGDDVVPIPGNFFLSSL 255 (255)
Q Consensus 209 ----------~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~vi~g~~~~~~L 255 (255)
......+.|.++|+++|+|++|+||+|++++|.|++||+|+++++||
T Consensus 236 ~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~~~ql 292 (317)
T TIGR01293 236 KDKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQL 292 (317)
T ss_pred hhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCCHHHH
Confidence 11233467999999999999999999999999999999999999985
No 6
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=3e-53 Score=370.61 Aligned_cols=244 Identities=27% Similarity=0.382 Sum_probs=204.3
Q ss_pred cceeeeCCCCcccccceecccccCCCCCCCCCHHHHHHHHHHHHHcCCCceecccccC-------CCchHHHHHHHHhc-
Q 025312 8 VPRVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYG-------QNANEVLLGKALKQ- 79 (255)
Q Consensus 8 m~~~~lg~~g~~vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~a~~~Gi~~~DtA~~Yg-------~g~se~~lg~~l~~- 79 (255)
|+||+||++|++||+||||||++|. ..+++++.++|+.|++.|||+||||+.|| .|.||+.+|++|++
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~----~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~ 76 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGE----QNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKR 76 (346)
T ss_pred CCceecCCCCCccccEeEeccccCC----CCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhc
Confidence 7899999999999999999999864 23678999999999999999999999998 48899999999986
Q ss_pred CCCCceEEEecccccccC-ccc--cccCCCHHHHHHHHHHHHhHcCCCcceEEecccCCC-----------------CCC
Q 025312 80 LPREKIQVATKFGIAGIG-VAG--VIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDT-----------------SVP 139 (255)
Q Consensus 80 ~~R~~~~i~tK~~~~~~~-~~~--~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~-----------------~~~ 139 (255)
.+|++++|+||++..... +.. ...+.+++.+++++++||++||+||||+|++|||++ ..+
T Consensus 77 ~~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~ 156 (346)
T PRK10625 77 GSREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVS 156 (346)
T ss_pred CCcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccccCCCC
Confidence 469999999998632211 000 112468999999999999999999999999999965 235
Q ss_pred HHHHHHHHHHHHHhCCcceEEcCCCCHHHHHHHhhc------CCceEeeccCCcCCcChhhchhhhcc--------ccC-
Q 025312 140 IEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV------HPITAVQMEWSLWTRDIEEEIIPLCR--------FKG- 204 (255)
Q Consensus 140 ~~~~~~~l~~l~~~G~vr~iGvsn~~~~~l~~~~~~------~~~~~~q~~~n~~~~~~~~~~~~~~~--------~~~- 204 (255)
++++|++|++|+++|+||+||+|||+.+++++++.. ..++++|++||++++..+.+++++|+ |++
T Consensus 157 ~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~spL 236 (346)
T PRK10625 157 LLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCL 236 (346)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEEeccc
Confidence 789999999999999999999999999988776532 35788999999999876678999998 222
Q ss_pred --C----C--------------h--------hhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEEecCCCCCCCC
Q 025312 205 --E----N--------------L--------DRNKSIYFRIGNLAKKYNCTSAQLALAWVLGQGDDVVPIPGNFFLSSL 255 (255)
Q Consensus 205 --~----~--------------~--------~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~vi~g~~~~~~L 255 (255)
+ . + +......+.|.++|+++|+|++|+||+|++++|.|++||+|+++++||
T Consensus 237 ~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I~G~~~~~~l 315 (346)
T PRK10625 237 AFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLLGATTMEQL 315 (346)
T ss_pred cCeeccCCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEeCCCCHHHH
Confidence 0 0 0 112234578999999999999999999999999999999999999885
No 7
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=6.4e-53 Score=364.04 Aligned_cols=239 Identities=31% Similarity=0.451 Sum_probs=201.5
Q ss_pred eeeeCCCCcccccceecccccCCCCCCCCCHHHHHHHHHHHHHcCCCceecccccCCCchHHHHHHHHhc--CCCCceEE
Q 025312 10 RVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ--LPREKIQV 87 (255)
Q Consensus 10 ~~~lg~~g~~vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~--~~R~~~~i 87 (255)
||+||++|++||+||||||++|..|+. .+++++.++++.|++.|||+||||+.||.|.+|+.+|++|++ .+|++++|
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~~~~-~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~~~R~~v~I 79 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSVFGP-VSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKALGIPREKYVV 79 (314)
T ss_pred CCcCCCCCCcccCcccccccccCCCCC-CCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhCCCCcceEEE
Confidence 688999999999999999999876664 478899999999999999999999999999999999999987 36999999
Q ss_pred EecccccccCccccccCCCHHHHHHHHHHHHhHcCCCcceEEecccCCCC---CCHHHHHHHHHHHHHhCCcceEEcCCC
Q 025312 88 ATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS---VPIEETIGEMKKLVEEGKIKYIGLSEA 164 (255)
Q Consensus 88 ~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~---~~~~~~~~~l~~l~~~G~vr~iGvsn~ 164 (255)
+||++.... ..+.+++.+++++++||++||+||||+|++|+|+.. ..++++|++|++|+++||||+||+|||
T Consensus 80 ~TK~~~~~~-----~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~ 154 (314)
T PLN02587 80 STKCGRYGE-----GFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGKVRFIGITGL 154 (314)
T ss_pred EeccccCCC-----CCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 999974321 124689999999999999999999999999999742 346789999999999999999999999
Q ss_pred CHHHHHHHhhc---C--CceEeeccCCcCCcChhhchhhhcc--------ccC---CC------------hhhhHHHHHH
Q 025312 165 SPGTIRRAHAV---H--PITAVQMEWSLWTRDIEEEIIPLCR--------FKG---EN------------LDRNKSIYFR 216 (255)
Q Consensus 165 ~~~~l~~~~~~---~--~~~~~q~~~n~~~~~~~~~~~~~~~--------~~~---~~------------~~~~~~~~~~ 216 (255)
+++++..+... . .+..+|+.||+.++.. .+++++|+ |++ +. .+......+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ll~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~ 233 (314)
T PLN02587 155 PLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSL-EDLLPYLKSKGVGVISASPLAMGLLTENGPPEWHPAPPELKSACAA 233 (314)
T ss_pred CHHHHHHHHHhhhcCCCCeEEeccccCcchhhH-HHHHHHHHHcCceEEEechhhccccCCCCCCCCCCCCHHHHHHHHH
Confidence 99888776643 2 3344678899877643 47999999 222 10 1223344567
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhCCCCeEEecCCCCCCCC
Q 025312 217 IGNLAKKYNCTSAQLALAWVLGQGDDVVPIPGNFFLSSL 255 (255)
Q Consensus 217 l~~ia~~~~~s~~q~al~~~l~~~~v~~vi~g~~~~~~L 255 (255)
+.++|+++++|++|+||||++++|.|++||+|+++++||
T Consensus 234 l~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~~~~~l 272 (314)
T PLN02587 234 AATHCKEKGKNISKLALQYSLSNKDISTTLVGMNSVQQV 272 (314)
T ss_pred HHHHHHHhCCCHHHHHHHHHHhCCCCeeEEecCCCHHHH
Confidence 889999999999999999999999999999999999885
No 8
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=2.3e-53 Score=352.60 Aligned_cols=221 Identities=30% Similarity=0.441 Sum_probs=195.9
Q ss_pred eeeeCCCCcccccceecccccCCCCCCCCCHHHHHHHHHHHHHcCCCceecccccCCCchHHHHHHHHhc------CCCC
Q 025312 10 RVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ------LPRE 83 (255)
Q Consensus 10 ~~~lg~~g~~vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~------~~R~ 83 (255)
+.+| ++|.+||.||||||+. ++.++.+++..|++.||||||||..|+ +|+.+|++|++ .+|+
T Consensus 6 ~~~L-n~G~~mP~iGlGTw~~--------~~~~~~~aV~~Al~~GYRHIDtA~~Y~---NE~evG~aik~~i~~~~v~Re 73 (300)
T KOG1577|consen 6 TVKL-NNGFKMPIIGLGTWQS--------PPGQVAEAVKAAIKAGYRHIDTAHVYG---NEKEVGEAIKELLAEGGVKRE 73 (300)
T ss_pred eEec-cCCCccceeeeEeccc--------ChhhHHHHHHHHHHhCcceeechhhhC---ChHHHHHHHHHHhhhCCcchh
Confidence 6778 9999999999999973 678899999999999999999999999 89999999995 4899
Q ss_pred ceEEEecccccccCccccccCCCHHHHHHHHHHHHhHcCCCcceEEecccCCCC----------------CCHHHHHHHH
Q 025312 84 KIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS----------------VPIEETIGEM 147 (255)
Q Consensus 84 ~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~----------------~~~~~~~~~l 147 (255)
++||+||+|... +.++.++.++++||++||+||+|+|++|||-.. .+..++|++|
T Consensus 74 diFiTSKlw~~~---------~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~tW~am 144 (300)
T KOG1577|consen 74 DIFITSKLWPTD---------HAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIETWKAM 144 (300)
T ss_pred hheeeeccCccc---------cChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHHHHHH
Confidence 999999997643 688999999999999999999999999999543 3467899999
Q ss_pred HHHHHhCCcceEEcCCCCHHHHHHHhhc--CCceEeeccCCcCCcChhhchhhhcc--------ccCCChhh---hHHHH
Q 025312 148 KKLVEEGKIKYIGLSEASPGTIRRAHAV--HPITAVQMEWSLWTRDIEEEIIPLCR--------FKGENLDR---NKSIY 214 (255)
Q Consensus 148 ~~l~~~G~vr~iGvsn~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~~~~~~~--------~~~~~~~~---~~~~~ 214 (255)
+++++.|++|+||||||+..+|++++.. .+|.++|+++|++.++ ..+++||+ |+|-.-.. .....
T Consensus 145 E~~~~~Gl~rsIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~Q--~~L~~fCk~~~I~v~AYSpLg~~~~~~~ll~~ 222 (300)
T KOG1577|consen 145 EKLVDEGLVRSIGVSNFNIKQLEELLNLAKIKPAVNQVECHPYLQQ--KKLVEFCKSKGIVVTAYSPLGSPGRGSDLLED 222 (300)
T ss_pred HHHHHcCCceEeeeecCCHHHHHHHHhcCCCCCccceeeccCCcCh--HHHHHHHhhCCcEEEEecCCCCCCCccccccC
Confidence 9999999999999999999999999887 7799999999999987 67999999 55522111 12234
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCCeEEecCCCCCCCC
Q 025312 215 FRIGNLAKKYNCTSAQLALAWVLGQGDDVVPIPGNFFLSSL 255 (255)
Q Consensus 215 ~~l~~ia~~~~~s~~q~al~~~l~~~~v~~vi~g~~~~~~L 255 (255)
+.+.++|++|+.|++|++|||.+++|. +|||.++|++|+
T Consensus 223 ~~l~~iA~K~~kt~aQIlLrw~~q~g~--~vipKS~~~~Ri 261 (300)
T KOG1577|consen 223 PVLKEIAKKYNKTPAQILLRWALQRGV--SVIPKSSNPERI 261 (300)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCc--EEEeccCCHHHH
Confidence 689999999999999999999999998 999999999864
No 9
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=6.4e-52 Score=353.86 Aligned_cols=245 Identities=25% Similarity=0.418 Sum_probs=204.8
Q ss_pred cccceeeeCCCCcccccceecccccCC--CCCCCCCHHHHHHHHHHHHHcCCCceecccccCCCchHHHHHHHHhcCCCC
Q 025312 6 HQVPRVKLGTQGLEVSKLGYGCMNLSG--GYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPRE 83 (255)
Q Consensus 6 ~~m~~~~lg~~g~~vs~lg~Gt~~~~~--~~~~~~~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~R~ 83 (255)
|+-.+.+++ |++||+||||||++|+ .||...+++++.++|+.|++.|||+||||+.||.|.+|+.+|++++. .|+
T Consensus 5 ~~~~~~~l~--g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~-~R~ 81 (290)
T PRK10376 5 MSSGTFTLG--GRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHP-YPD 81 (290)
T ss_pred ccCCceecC--CeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhc-CCC
Confidence 444556674 9999999999999985 36655577889999999999999999999999999999999999973 699
Q ss_pred ceEEEecccccccCccccccCCCHHHHHHHHHHHHhHcCCCcceEEecccCCC-----CCCHHHHHHHHHHHHHhCCcce
Q 025312 84 KIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDT-----SVPIEETIGEMKKLVEEGKIKY 158 (255)
Q Consensus 84 ~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~-----~~~~~~~~~~l~~l~~~G~vr~ 158 (255)
+++|+||++.....+..+..+.+++.+++++++||+|||+||||+|++|+++. ..+++++|++|++|+++||||+
T Consensus 82 ~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~l~~~Gkir~ 161 (290)
T PRK10376 82 DLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAELQRQGLVRH 161 (290)
T ss_pred eEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHHHHHCCceeE
Confidence 99999998754322222334678999999999999999999999999887421 2347899999999999999999
Q ss_pred EEcCCCCHHHHHHHhhcCCceEeeccCCcCCcChhhchhhhcc--------ccCCChhhhHHHHHHHHHHHHHcCCCHHH
Q 025312 159 IGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDIEEEIIPLCR--------FKGENLDRNKSIYFRIGNLAKKYNCTSAQ 230 (255)
Q Consensus 159 iGvsn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~ia~~~~~s~~q 230 (255)
||||||++++++++.+..+++++|++||++++.. .+++++|+ |.|-.-. .....+.+.++|+++++|++|
T Consensus 162 iGvSn~~~~~l~~~~~~~~~~~~q~~~~~~~~~~-~~~~~~~~~~gi~v~a~~pL~g~-~~~~~~~l~~ia~~~~~t~aq 239 (290)
T PRK10376 162 IGLSNVTPTQVAEARKIAEIVCVQNHYNLAHRAD-DALIDALARDGIAYVPFFPLGGF-TPLQSSTLSDVAASLGATPMQ 239 (290)
T ss_pred EEecCCCHHHHHHHHhhCCeEEEecccCCCcCCh-HHHHHHHHHcCCEEEEeecCCCC-ChhhhHHHHHHHHHhCCCHHH
Confidence 9999999999999988889999999999999763 56889998 4431100 011246789999999999999
Q ss_pred HHHHHHHhCCCCeEEecCCCCCCCC
Q 025312 231 LALAWVLGQGDDVVPIPGNFFLSSL 255 (255)
Q Consensus 231 ~al~~~l~~~~v~~vi~g~~~~~~L 255 (255)
+||+|+++++.+++||+|+++++||
T Consensus 240 ~al~w~l~~~~~~~~i~G~~~~~~l 264 (290)
T PRK10376 240 VALAWLLQRSPNILLIPGTSSVAHL 264 (290)
T ss_pred HHHHHHHhCCCCeeEeeCCCCHHHH
Confidence 9999999997777899999999985
No 10
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=1.4e-51 Score=351.47 Aligned_cols=239 Identities=41% Similarity=0.631 Sum_probs=209.4
Q ss_pred eeeeCCCCcccccceecccccCCCCCCCCCHHHHHHHHHHHHHcCCCceecccccCCCchHHHHHHHHhcCC-CCceEEE
Q 025312 10 RVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLP-REKIQVA 88 (255)
Q Consensus 10 ~~~lg~~g~~vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~-R~~~~i~ 88 (255)
+|+||++|++||+||||||.++..| .+.+++.++++.|++.|||+||||+.||.|.+|+.+|++|++.+ |++++|+
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~~---~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~~~R~~~~i~ 77 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGGY---VDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKERGPREEVFIA 77 (285)
T ss_pred CcccCCCCceecCcceeccccCCCC---CCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhccCCcCcEEEE
Confidence 5789999999999999999987654 37789999999999999999999999999999999999999854 9999999
Q ss_pred ecccccccCccccccCCCHHHHHHHHHHHHhHcCCCcceEEecccCCCCCC-HHHHHHHHHHHHHhCCcceEEcCCCCHH
Q 025312 89 TKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVP-IEETIGEMKKLVEEGKIKYIGLSEASPG 167 (255)
Q Consensus 89 tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~-~~~~~~~l~~l~~~G~vr~iGvsn~~~~ 167 (255)
||++..... ..+.+++.+++++++||++||+||||+|+||+|+.... ..++|++|++++++|+||+||||||+++
T Consensus 78 tK~~~~~~~----~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~ 153 (285)
T cd06660 78 TKVGPRPGD----GRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGVSNFSAE 153 (285)
T ss_pred eeecCCCCC----CCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEeeCCCHH
Confidence 999865321 14478999999999999999999999999999987765 8899999999999999999999999999
Q ss_pred HHHHHhhc--CCceEeeccCCcCCcChhhchhhhcc--------ccC---CChh---------hhHHHHHHHHHHHHHcC
Q 025312 168 TIRRAHAV--HPITAVQMEWSLWTRDIEEEIIPLCR--------FKG---ENLD---------RNKSIYFRIGNLAKKYN 225 (255)
Q Consensus 168 ~l~~~~~~--~~~~~~q~~~n~~~~~~~~~~~~~~~--------~~~---~~~~---------~~~~~~~~l~~ia~~~~ 225 (255)
.+.+++.. .+|+++|++||++++..+.+++++|+ +++ +.+. ........+..++.+++
T Consensus 154 ~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (285)
T cd06660 154 QLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAGGLLTGKYLPGAPPPEGDLLEALKEIAEKHG 233 (285)
T ss_pred HHHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccCceecCCCCCCCCCChhhHHHHHHHHHHHhC
Confidence 99999888 89999999999999987667999998 221 1110 00113467899999999
Q ss_pred CCHHHHHHHHHHhCCCCeEEecCCCCCCCC
Q 025312 226 CTSAQLALAWVLGQGDDVVPIPGNFFLSSL 255 (255)
Q Consensus 226 ~s~~q~al~~~l~~~~v~~vi~g~~~~~~L 255 (255)
++++|+||+|++++|.+++||+|+++++||
T Consensus 234 ~s~~q~al~~~l~~p~~~~~i~g~~~~~~l 263 (285)
T cd06660 234 VTPAQVALRWLLQQPGVTSVIPGASSPERL 263 (285)
T ss_pred CCHHHHHHHHHhcCCCCeEEEeCCCCHHHH
Confidence 999999999999999999999999999885
No 11
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=2.2e-50 Score=321.89 Aligned_cols=245 Identities=28% Similarity=0.425 Sum_probs=216.5
Q ss_pred cceeeeCCCCcccccceecccccCCCCCCCCCHHHHHHHHHHHHHcCCCceecccccCCCchHHHHHHHHhc--CCCCce
Q 025312 8 VPRVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ--LPREKI 85 (255)
Q Consensus 8 m~~~~lg~~g~~vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~--~~R~~~ 85 (255)
|++.++++.|+++|++.+|+|++.. |+ .+++++...+..|++.||++||.|+.||++++|+++|.+|+- ..|+++
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d-~~--~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~p~lReki 77 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLND-WN--MSARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLAPGLREKI 77 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhh-cc--CCHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcChhhhhhe
Confidence 6788999999999999999999976 44 366899999999999999999999999999999999999987 579999
Q ss_pred EEEecccccccCc---cccccCCCHHHHHHHHHHHHhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHHhCCcceEEcC
Q 025312 86 QVATKFGIAGIGV---AGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS 162 (255)
Q Consensus 86 ~i~tK~~~~~~~~---~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~vr~iGvs 162 (255)
.|+||+|...... ....+++|.++|..|+|+||+||++||+|+++||+||+..+.+|+.+++..|+++||||++|||
T Consensus 78 eivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd~eeVAeAf~~L~~sGKVr~fGVS 157 (298)
T COG4989 78 EIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMDAEEVAEAFTHLHKSGKVRHFGVS 157 (298)
T ss_pred EeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCCHHHHHHHHHHHHhcCCeeeeecC
Confidence 9999998765321 1235789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhhc--CCceEeeccCCcCCcCh-hhchhhhcc--------ccC---CC----hhhhHHHHHHHHHHHHHc
Q 025312 163 EASPGTIRRAHAV--HPITAVQMEWSLWTRDI-EEEIIPLCR--------FKG---EN----LDRNKSIYFRIGNLAKKY 224 (255)
Q Consensus 163 n~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~-~~~~~~~~~--------~~~---~~----~~~~~~~~~~l~~ia~~~ 224 (255)
||++.+++-+... .++++||++.|+++... .++.+++|+ |+| +. ..+.....++|..+|.++
T Consensus 158 Nf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g~~~~q~l~~~l~~ia~e~ 237 (298)
T COG4989 158 NFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLGDDKFQRLRKVLDRIAEEY 237 (298)
T ss_pred CCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCccccCCcchHHHHHHHHHHHHHh
Confidence 9999998877665 45799999999999873 478999999 433 11 234455678999999999
Q ss_pred C-CCHHHHHHHHHHhCCCCeEEecCCCCCCCC
Q 025312 225 N-CTSAQLALAWVLGQGDDVVPIPGNFFLSSL 255 (255)
Q Consensus 225 ~-~s~~q~al~~~l~~~~v~~vi~g~~~~~~L 255 (255)
| .|.++++++|++.+|.-..||+|+.|++++
T Consensus 238 ga~s~~~VaiAWllR~Pa~~~PiiGt~~~eRi 269 (298)
T COG4989 238 GAVSITAVAIAWLLRHPAKPQPIIGTGNLERI 269 (298)
T ss_pred CcccHHHHHHHHHHhCcCcccceecCCCHHHH
Confidence 9 799999999999999999999999999864
No 12
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=8.7e-50 Score=340.01 Aligned_cols=227 Identities=36% Similarity=0.544 Sum_probs=192.5
Q ss_pred cceecccccCCCCCCCCCHHHHHHHHHHHHHcCCCceecccccCCCchHHHHHHHHhc--CCCCceEEEecccccccCcc
Q 025312 22 KLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ--LPREKIQVATKFGIAGIGVA 99 (255)
Q Consensus 22 ~lg~Gt~~~~~~~~~~~~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~--~~R~~~~i~tK~~~~~~~~~ 99 (255)
+||||||+++.. ..+.+++.++|+.|++.|||+||||+.||.|.||+.+|++|+. .+|++++|+||+... .
T Consensus 1 ~l~lG~~~~~~~---~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~~~~r~~~~i~tK~~~~----~ 73 (283)
T PF00248_consen 1 PLGLGTWRLGGE---RVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKSRVPRDDIFISTKVYGD----G 73 (283)
T ss_dssp SBEEECTTBTTT---TSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHTSSTGGGSEEEEEEESS----S
T ss_pred CEEEEccccCCC---CCCHHHHHHHHHHHHHcCCCeecccccccccccccccccccccccccccccccccccccc----c
Confidence 589999998753 4589999999999999999999999999888899999999998 689999999999211 1
Q ss_pred ccccCCCHHHHHHHHHHHHhHcCCCcceEEecccCCCCCC-HHHHHHHHHHHHHhCCcceEEcCCCCHHHHHHH--hhcC
Q 025312 100 GVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVP-IEETIGEMKKLVEEGKIKYIGLSEASPGTIRRA--HAVH 176 (255)
Q Consensus 100 ~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~-~~~~~~~l~~l~~~G~vr~iGvsn~~~~~l~~~--~~~~ 176 (255)
.+..+.+++.+++++++||++||+||||+|++|+|+.... .+++|++|++|+++|+||+||||||+++.++.+ ....
T Consensus 74 ~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 153 (283)
T PF00248_consen 74 KPEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQLEAALKIGSI 153 (283)
T ss_dssp STGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHTCTSS
T ss_pred cccccccccccccccccccccccccchhccccccccccccccchhhhhhhhccccccccccccccccccccccccccccc
Confidence 2345689999999999999999999999999999999888 899999999999999999999999999999999 5558
Q ss_pred CceEeeccCCcCCcChhhchhhhcc--------ccC---CChhh----------------hHHHHHHHHHHHHHcCCCHH
Q 025312 177 PITAVQMEWSLWTRDIEEEIIPLCR--------FKG---ENLDR----------------NKSIYFRIGNLAKKYNCTSA 229 (255)
Q Consensus 177 ~~~~~q~~~n~~~~~~~~~~~~~~~--------~~~---~~~~~----------------~~~~~~~l~~ia~~~~~s~~ 229 (255)
+|+++|++||++++....+++++|+ +++ +.+.. .....+.+.++++++|+|++
T Consensus 154 ~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~s~~ 233 (283)
T PF00248_consen 154 PPDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAGGLLTGKYKSPPPPPSRASLRDAQELADALRELAEEHGVSPA 233 (283)
T ss_dssp -ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGGGCGGTTTTTTTTSTTTSGSSTHGGGHHHHHHHHHHHTSSHH
T ss_pred cccccccccccccccccccccccccccccccccccccccCccccccccCCCcccccccchhhhhhhhhhhhhhhcccccc
Confidence 8999999999997777788999998 221 11110 11456789999999999999
Q ss_pred HHHHHHHHhCCCCeEEecCCCCCCCC
Q 025312 230 QLALAWVLGQGDDVVPIPGNFFLSSL 255 (255)
Q Consensus 230 q~al~~~l~~~~v~~vi~g~~~~~~L 255 (255)
|+||+|+++++.+++||+|+++++||
T Consensus 234 q~al~~~l~~~~~~~~i~g~~~~~~l 259 (283)
T PF00248_consen 234 QLALRWVLSHPGVASVIVGASSPEHL 259 (283)
T ss_dssp HHHHHHHHTSHTTEEEEEB-SSHHHH
T ss_pred hhhhhhhhhccccccccCCCCCHHHH
Confidence 99999999999999999999999875
No 13
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=1.9e-49 Score=338.17 Aligned_cols=225 Identities=18% Similarity=0.229 Sum_probs=189.4
Q ss_pred CcccccceecccccCCC-------CCCCCCHHHHHHHHHHHHHcCCCceecccccCCCchHHHHHHHHhcCCCCceEEEe
Q 025312 17 GLEVSKLGYGCMNLSGG-------YSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVAT 89 (255)
Q Consensus 17 g~~vs~lg~Gt~~~~~~-------~~~~~~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~R~~~~i~t 89 (255)
+++||+||||||++|+. |+. .+++++.++|+.|++.|||+||||+.||. ||+.+|++|+..++++++++|
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~-~~~~ea~~~l~~A~~~Gin~~DTA~~YG~--SE~~lG~al~~~~~~~~~i~t 78 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGR-TPEAEARDILNIAARAGLSVLDASGLFGR--AETVLGQLIPRPVPFRVTLST 78 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCC-CCHHHHHHHHHHHHHcCCCEEecchhhhh--HHHHHhhhhccCCceEeeccc
Confidence 57899999999999863 343 58899999999999999999999999975 999999999853346788888
Q ss_pred cccccccCccccccCCCHHHHHHHHHHHHhHcCCCcceEEecccCCCC-CCH-HHHHHHHHHHHHhCCcceEEcCCCCHH
Q 025312 90 KFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS-VPI-EETIGEMKKLVEEGKIKYIGLSEASPG 167 (255)
Q Consensus 90 K~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~-~~~-~~~~~~l~~l~~~G~vr~iGvsn~~~~ 167 (255)
|.. +.+++.+++++++||+|||+||||+|++|+|++. .+. +++|++|++|+++||||+||||||+++
T Consensus 79 k~~-----------~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~ 147 (292)
T PRK14863 79 VRA-----------DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHASD 147 (292)
T ss_pred ccc-----------cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccCHH
Confidence 842 1468899999999999999999999999999763 233 578999999999999999999999999
Q ss_pred HHHHHhhcCCceEeeccCCcCCcChh-hchhhhcc--------ccC---CC-----------hhhhHHHHHHHHHHHHHc
Q 025312 168 TIRRAHAVHPITAVQMEWSLWTRDIE-EEIIPLCR--------FKG---EN-----------LDRNKSIYFRIGNLAKKY 224 (255)
Q Consensus 168 ~l~~~~~~~~~~~~q~~~n~~~~~~~-~~~~~~~~--------~~~---~~-----------~~~~~~~~~~l~~ia~~~ 224 (255)
++..+....+|+++|++||+++++.+ .+++++|+ |++ +. +.........+.++++++
T Consensus 148 ~~~~~~~~~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (292)
T PRK14863 148 DPVGVARRFKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLFLPPDRVPAQLKGASGRLSRVRRMIAEG 227 (292)
T ss_pred HHHHHHhcCCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCccccCCcccCccchhhhhHHHHHHHHHHHHc
Confidence 99888877899999999999999754 46889998 221 11 111122345677888888
Q ss_pred CCCHHHHHHHHHHhCCCCeEEecCCCCCCCC
Q 025312 225 NCTSAQLALAWVLGQGDDVVPIPGNFFLSSL 255 (255)
Q Consensus 225 ~~s~~q~al~~~l~~~~v~~vi~g~~~~~~L 255 (255)
++|++|+||+|++++|.|+++|+|+++++||
T Consensus 228 ~~s~aqlalaw~l~~p~v~~~I~G~~~~~ql 258 (292)
T PRK14863 228 RSDPLQAALGFALSRPEGSAVLVGVNSAAEL 258 (292)
T ss_pred CCCHHHHHHHHHHhCCCCCeEEEecCCHHHH
Confidence 9999999999999999999999999999885
No 14
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=6.4e-49 Score=331.61 Aligned_cols=213 Identities=27% Similarity=0.417 Sum_probs=183.2
Q ss_pred cccccceecccccCCCCCCCCCHHHHHHHHHHHHHcCCCceecccccCCCchHHHHHHHHhc--CCCCceEEEecccccc
Q 025312 18 LEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ--LPREKIQVATKFGIAG 95 (255)
Q Consensus 18 ~~vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~--~~R~~~~i~tK~~~~~ 95 (255)
.+||.||||||++ +.+++.++++.|++.|||+||||+.|| +|+.+|++|++ .+|+++||+||++..
T Consensus 1 ~~vs~lglGt~~~--------~~~~~~~~i~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~R~~v~i~TK~~~~- 68 (267)
T PRK11172 1 MSIPAFGLGTFRL--------KDQVVIDSVKTALELGYRAIDTAQIYD---NEAAVGQAIAESGVPRDELFITTKIWID- 68 (267)
T ss_pred CCCCCEeeEcccc--------ChHHHHHHHHHHHHcCCCEEEccchhC---CHHHHHHHHHHcCCChhHeEEEEEeCCC-
Confidence 3699999999976 346799999999999999999999999 79999999986 369999999998532
Q ss_pred cCccccccCCCHHHHHHHHHHHHhHcCCCcceEEecccCCCC--CCHHHHHHHHHHHHHhCCcceEEcCCCCHHHHHHHh
Q 025312 96 IGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS--VPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAH 173 (255)
Q Consensus 96 ~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~--~~~~~~~~~l~~l~~~G~vr~iGvsn~~~~~l~~~~ 173 (255)
+.+++.+++++++||+|||+||||+|++|+|++. .+.+++|++|++|+++||||+||||||+.+++++++
T Consensus 69 --------~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~ 140 (267)
T PRK11172 69 --------NLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIGISNFTIALMKQAI 140 (267)
T ss_pred --------CCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHH
Confidence 2578999999999999999999999999999764 467899999999999999999999999999999887
Q ss_pred hc---CCceEeeccCCcCCcChhhchhhhcc--------ccCCChhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCC
Q 025312 174 AV---HPITAVQMEWSLWTRDIEEEIIPLCR--------FKGENLDRNKSIYFRIGNLAKKYNCTSAQLALAWVLGQGDD 242 (255)
Q Consensus 174 ~~---~~~~~~q~~~n~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v 242 (255)
+. .+++++|++||++++. .+++++|+ |+|-... .....+.+.++|+++|+|++|+||+|++++|.
T Consensus 141 ~~~~~~~~~~~Q~~~~~~~~~--~~ll~~~~~~gi~v~a~spl~~G-~~~~~~~l~~~a~~~~~s~aqval~w~l~~~~- 216 (267)
T PRK11172 141 AAVGAENIATNQIELSPYLQN--RKVVAFAKEHGIHVTSYMTLAYG-KVLKDPVIARIAAKHNATPAQVILAWAMQLGY- 216 (267)
T ss_pred HhcCCCCCeEEeeecCCCCCc--HHHHHHHHHCCCEEEEECCCCCC-cccCCHHHHHHHHHhCCCHHHHHHHHHHhCCC-
Confidence 64 3689999999999886 67999998 4441100 01112568999999999999999999999985
Q ss_pred eEEecCCCCCCCC
Q 025312 243 VVPIPGNFFLSSL 255 (255)
Q Consensus 243 ~~vi~g~~~~~~L 255 (255)
+||+|+++++||
T Consensus 217 -~~i~g~~~~~~l 228 (267)
T PRK11172 217 -SVIPSSTKRENL 228 (267)
T ss_pred -EeecCCCCHHHH
Confidence 799999999875
No 15
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=1.9e-48 Score=329.87 Aligned_cols=218 Identities=30% Similarity=0.383 Sum_probs=186.7
Q ss_pred eeeCCCCcccccceecccccCCCCCCCCCHHHHHHHHHHHHHcCCCceecccccCCCchHHHHHHHHhc--CCCCceEEE
Q 025312 11 VKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ--LPREKIQVA 88 (255)
Q Consensus 11 ~~lg~~g~~vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~--~~R~~~~i~ 88 (255)
..| ++|++||.||||||++ +++++.+++++|++.|+|+||||+.|| +|+.+|++|+. .+|++++|+
T Consensus 7 ~~l-~~g~~v~~lglG~~~~--------~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~R~~~~i~ 74 (275)
T PRK11565 7 IKL-QDGNVMPQLGLGVWQA--------SNEEVITAIHKALEVGYRSIDTAAIYK---NEEGVGKALKEASVAREELFIT 74 (275)
T ss_pred EEc-CCCCccCCcceECccC--------CHHHHHHHHHHHHHhCCCEEEchhhhC---CHHHHHHHHHHcCCCHHHEEEE
Confidence 456 8999999999999975 467899999999999999999999998 79999999986 369999999
Q ss_pred ecccccccCccccccCCCHHHHHHHHHHHHhHcCCCcceEEecccCCCCC-CHHHHHHHHHHHHHhCCcceEEcCCCCHH
Q 025312 89 TKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSV-PIEETIGEMKKLVEEGKIKYIGLSEASPG 167 (255)
Q Consensus 89 tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~-~~~~~~~~l~~l~~~G~vr~iGvsn~~~~ 167 (255)
||++. .+++.+++++++||++||+||||+|++|+|++.. ++.++|++|++|+++|+||+||||||+++
T Consensus 75 tK~~~-----------~~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~ 143 (275)
T PRK11565 75 TKLWN-----------DDHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIGVCNFQIH 143 (275)
T ss_pred EEecC-----------cchHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeEEeeccCCHH
Confidence 99852 2567899999999999999999999999998753 47899999999999999999999999999
Q ss_pred HHHHHhhc--CCceEeeccCCcCCcChhhchhhhcc--------ccCCCh-hhhHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 025312 168 TIRRAHAV--HPITAVQMEWSLWTRDIEEEIIPLCR--------FKGENL-DRNKSIYFRIGNLAKKYNCTSAQLALAWV 236 (255)
Q Consensus 168 ~l~~~~~~--~~~~~~q~~~n~~~~~~~~~~~~~~~--------~~~~~~-~~~~~~~~~l~~ia~~~~~s~~q~al~~~ 236 (255)
++++++.. .++.++|++||++.+. .+++++|+ |+|-.. .......+.|.++|+++|+|++|+||||+
T Consensus 144 ~l~~~~~~~~v~~~~~Q~~~~~~~~~--~~~~~~~~~~~i~~~a~spl~~G~~~~~~~~~l~~ia~~~g~s~aq~aL~w~ 221 (275)
T PRK11565 144 HLQRLIDETGVTPVINQIELHPLMQQ--RQLHAWNATHKIQTESWSPLAQGGKGVFDQKVIRDLADKYGKTPAQIVIRWH 221 (275)
T ss_pred HHHHHHHhCCCCceeeeeecCCccch--HHHHHHHHHCCCEEEEEccCCCCCcccccCHHHHHHHHHhCCCHHHHHHHHH
Confidence 99988754 3578999999999875 56888888 444110 00111236799999999999999999999
Q ss_pred HhCCCCeEEecCCCCCCCC
Q 025312 237 LGQGDDVVPIPGNFFLSSL 255 (255)
Q Consensus 237 l~~~~v~~vi~g~~~~~~L 255 (255)
+++|. +||||+++++|+
T Consensus 222 l~~~~--~~I~g~~~~~~i 238 (275)
T PRK11565 222 LDSGL--VVIPKSVTPSRI 238 (275)
T ss_pred HcCCC--EeeCCCCCHHHH
Confidence 99986 699999999885
No 16
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=1.4e-46 Score=315.44 Aligned_cols=237 Identities=27% Similarity=0.358 Sum_probs=207.2
Q ss_pred cceeeeCCCCcccccceecccccCCCCCCCCCHHHHHHHHHHHHHcCCCceecccccCCCchHHHHHHHHhcCCCCceEE
Q 025312 8 VPRVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQV 87 (255)
Q Consensus 8 m~~~~lg~~g~~vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~R~~~~i 87 (255)
|.||++|++|.++|.+|||+|++...|...++.+.+.++++.|++.|||+||||..|..|.||..+|++|+++.|+++++
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~Rekv~L 80 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGYREKVKL 80 (391)
T ss_pred CchhhcCCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcccceEEE
Confidence 78999999999999999999999988877789999999999999999999999999988889999999999988999999
Q ss_pred EecccccccCccccccCCCHHHHHHHHHHHHhHcCCCcceEEecccCCCCCCHH-----HHHHHHHHHHHhCCcceEEcC
Q 025312 88 ATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIE-----ETIGEMKKLVEEGKIKYIGLS 162 (255)
Q Consensus 88 ~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~-----~~~~~l~~l~~~G~vr~iGvs 162 (255)
+||+..... .+++.+++-++++|++||+||+|+|+||..+. ..++ .+++.+++++++|+||++|+|
T Consensus 81 aTKlp~~~~--------~~~edm~r~fneqLekl~~Dy~D~yliH~l~~-e~~~k~~~~g~~df~~kak~eGkIr~~GFS 151 (391)
T COG1453 81 ATKLPSWPV--------KDREDMERIFNEQLEKLGTDYIDYYLIHGLNT-ETWEKIERLGVFDFLEKAKAEGKIRNAGFS 151 (391)
T ss_pred EeecCCccc--------cCHHHHHHHHHHHHHHhCCchhhhhhhccccH-HHHHHHHccChHHHHHHHHhcCcEEEeeec
Confidence 999975432 58899999999999999999999999999987 4443 369999999999999999999
Q ss_pred CC-CHHHHHHHhhcCCceEeeccCCcCCcChh--hchhhhcc--------ccC---CChhhhHHHHHHHHHHHHHcC--C
Q 025312 163 EA-SPGTIRRAHAVHPITAVQMEWSLWTRDIE--EEIIPLCR--------FKG---ENLDRNKSIYFRIGNLAKKYN--C 226 (255)
Q Consensus 163 n~-~~~~l~~~~~~~~~~~~q~~~n~~~~~~~--~~~~~~~~--------~~~---~~~~~~~~~~~~l~~ia~~~~--~ 226 (255)
.| +++.+.+++...+++++|++||.++.... ...+++|. ..| +.+... .-+++.++++++. .
T Consensus 152 fHgs~e~~~~iv~a~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~~--vP~~~~~l~~~~~~~~ 229 (391)
T COG1453 152 FHGSTEVFKEIVDAYPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYN--VPEKLEELCRPASPKR 229 (391)
T ss_pred CCCCHHHHHHHHhcCCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcccC--CCHHHHHHHHhcCCCC
Confidence 99 56889999999999999999999998754 25666666 222 222211 1257888898875 7
Q ss_pred CHHHHHHHHHHhCCCCeEEecCCCCCCCC
Q 025312 227 TSAQLALAWVLGQGDDVVPIPGNFFLSSL 255 (255)
Q Consensus 227 s~~q~al~~~l~~~~v~~vi~g~~~~~~L 255 (255)
||+.+|+||++++|.|+++++|+++++||
T Consensus 230 sP~~wa~R~~~shp~V~~vlsGm~~~~~l 258 (391)
T COG1453 230 SPAEWALRYLLSHPEVTTVLSGMNTPEQL 258 (391)
T ss_pred CcHHHHHHHHhcCCCeEEEecCCCCHHHH
Confidence 89999999999999999999999999875
No 17
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=1.2e-44 Score=291.13 Aligned_cols=245 Identities=28% Similarity=0.432 Sum_probs=203.0
Q ss_pred ccc-ccceeeeCCCCcccccceecccccCCCCCCCCCHHHHHHHHHHHHHcCCCceecccccCCCchHHHHHHHHhcCCC
Q 025312 4 EKH-QVPRVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPR 82 (255)
Q Consensus 4 ~~~-~m~~~~lg~~g~~vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~R 82 (255)
+|+ .|.+|.+|++|++||++|||...++..|+. .++++....+..|+..|||+|||++.||.+++|+.+|.++++.||
T Consensus 17 ~~vrrmeyR~lg~tgl~VSk~~fGga~L~~~fgd-~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~vPR 95 (342)
T KOG1576|consen 17 EKVRRMEYRQLGSTGLRVSKLGFGGAALGQLFGD-EDEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKDVPR 95 (342)
T ss_pred HHHHHHHHhhcCCCcceeeeeeecchhhhhhcCC-cchhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhhCCh
Confidence 344 589999999999999999999999988886 377777777777999999999999999999999999999999999
Q ss_pred CceEEEecccccccCccccccCCCHHHHHHHHHHHHhHcCCCcceEEecccCCCC----CCHHHHHHHHHHHHHhCCcce
Q 025312 83 EKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS----VPIEETIGEMKKLVEEGKIKY 158 (255)
Q Consensus 83 ~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~----~~~~~~~~~l~~l~~~G~vr~ 158 (255)
+..||+||++...-+ ...-++++++.+++++++||+||++||+|++++|..+.. ..+.|++.+|++++++||+|+
T Consensus 96 ~aYyIaTKvgRy~ld-~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk~~Gk~Rf 174 (342)
T KOG1576|consen 96 EAYYIATKVGRYELD-YANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELKQEGKIRF 174 (342)
T ss_pred hheeeeeeeeecccC-ccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHHhcCceeE
Confidence 999999999854311 112368999999999999999999999999999987643 346799999999999999999
Q ss_pred EEcCCCCHHHHHHHhhcC--CceEee--ccCCcCCcChhhchhhhcc---------------------------ccCCCh
Q 025312 159 IGLSEASPGTIRRAHAVH--PITAVQ--MEWSLWTRDIEEEIIPLCR---------------------------FKGENL 207 (255)
Q Consensus 159 iGvsn~~~~~l~~~~~~~--~~~~~q--~~~n~~~~~~~~~~~~~~~---------------------------~~~~~~ 207 (255)
|||+.++.+.+.+..+.. .++++. .+|++.+.. ++.+.. |+|..
T Consensus 175 iGitgypldvl~~~ae~~~G~~dvvlsY~ry~l~d~t----Ll~~~~~~~sk~vgVi~AsalsmgLLt~~gp~~wHPaS- 249 (342)
T KOG1576|consen 175 IGITGYPLDVLTECAERGKGRLDVVLSYCRYTLNDNT----LLRYLKRLKSKGVGVINASALSMGLLTNQGPPPWHPAS- 249 (342)
T ss_pred eeecccchHHHHHHHhcCCCceeeehhhhhhccccHH----HHHHHHHHHhcCceEEehhhHHHHHhhcCCCCCCCCCC-
Confidence 999999999999998763 366665 566665542 333322 33322
Q ss_pred hhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEEecCCCCCCCC
Q 025312 208 DRNKSIYFRIGNLAKKYNCTSAQLALAWVLGQGDDVVPIPGNFFLSSL 255 (255)
Q Consensus 208 ~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~vi~g~~~~~~L 255 (255)
++......+..++|++.++..+.+|++|.++.|.++++++|+++.++|
T Consensus 250 ~Elk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s~~~l 297 (342)
T KOG1576|consen 250 DELKEAAKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMSSRQLL 297 (342)
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHccCCcceEEecCchHHHH
Confidence 233444566788899999999999999999999999999999998764
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=97.41 E-value=0.00026 Score=57.49 Aligned_cols=61 Identities=16% Similarity=0.191 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHhCCcceEEcCCCCHHHHHHHhhc--CCceEeeccCCcCCcChhhchhhhcc
Q 025312 140 IEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV--HPITAVQMEWSLWTRDIEEEIIPLCR 201 (255)
Q Consensus 140 ~~~~~~~l~~l~~~G~vr~iGvsn~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~~~~~~~ 201 (255)
+.+.|+.||+++.+|+|..||||.++..+|++++.. ..|..+|+...-.+.-+ .++..+|.
T Consensus 155 lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvP-pdLqafa~ 217 (285)
T KOG3023|consen 155 LKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVP-PDLQAFAD 217 (285)
T ss_pred HHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCC-HHHHHHhh
Confidence 457899999999999999999999999999999987 56788888776655544 57778877
No 19
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=90.68 E-value=8.7 Score=33.27 Aligned_cols=132 Identities=11% Similarity=0.013 Sum_probs=84.5
Q ss_pred CHHHHHHHHHHHHHcCCCceec---cc-----ccCCC----chHHHHHHHHhcC---CCCceEEEecccccccCcccccc
Q 025312 39 SEEDGISMIKHAFSKGITFFDT---AD-----VYGQN----ANEVLLGKALKQL---PREKIQVATKFGIAGIGVAGVIV 103 (255)
Q Consensus 39 ~~~~~~~~l~~a~~~Gi~~~Dt---A~-----~Yg~g----~se~~lg~~l~~~---~R~~~~i~tK~~~~~~~~~~~~~ 103 (255)
++++..+....+.+.|+..||- ++ .||.| ..-+.+.+.+++. ...++-|+-|+...+.
T Consensus 73 ~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~------- 145 (312)
T PRK10550 73 YPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWD------- 145 (312)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCC-------
Confidence 6677777778888999999982 22 35554 2345555555541 1225778888753221
Q ss_pred CCCHHHHHHHHHHHHhHcCCCcceEEecccCCCCCCHHH---HHHHHHHHHHhCCcceEEcCCC-CHHHHHHHhhcCCce
Q 025312 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEE---TIGEMKKLVEEGKIKYIGLSEA-SPGTIRRAHAVHPIT 179 (255)
Q Consensus 104 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~---~~~~l~~l~~~G~vr~iGvsn~-~~~~l~~~~~~~~~~ 179 (255)
+.+. ...+-+.++..| +|.+.+|.-.....+.. -|+...++++.-.|--||.... ++++.+++++....+
T Consensus 146 --~~~~-~~~~a~~l~~~G---vd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~D 219 (312)
T PRK10550 146 --SGER-KFEIADAVQQAG---ATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCD 219 (312)
T ss_pred --CchH-HHHHHHHHHhcC---CCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCC
Confidence 1122 235566677777 56667786433221211 3788888888877888888877 788999988777777
Q ss_pred Eeec
Q 025312 180 AVQM 183 (255)
Q Consensus 180 ~~q~ 183 (255)
.+++
T Consensus 220 gVmi 223 (312)
T PRK10550 220 AVMI 223 (312)
T ss_pred EEEE
Confidence 7776
No 20
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=88.00 E-value=2.1 Score=34.67 Aligned_cols=67 Identities=16% Similarity=0.215 Sum_probs=46.1
Q ss_pred HhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHHhCCcceEEcC-CCCHHHHHHHhhcCCceEeeccCC
Q 025312 118 LKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPGTIRRAHAVHPITAVQMEWS 186 (255)
Q Consensus 118 L~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~vr~iGvs-n~~~~~l~~~~~~~~~~~~q~~~n 186 (255)
+..+|.||+-+++........+.+ ....+.+.. .+.++.+||. |-+++.+.++.+..+++++|++-+
T Consensus 17 ~~~~GaD~iGfIf~~~SpR~V~~~-~a~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~~~~d~vQLHG~ 84 (207)
T PRK13958 17 ASQLPIDAIGFIHYEKSKRHQTIT-QIKKLASAV-PNHIDKVCVVVNPDLTTIEHILSNTSINTIQLHGT 84 (207)
T ss_pred HHHcCCCEEEEecCCCCcccCCHH-HHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhCCCCEEEECCC
Confidence 456999999997544322233333 333333332 3568889996 778999999998889999999753
No 21
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=86.53 E-value=19 Score=30.64 Aligned_cols=130 Identities=12% Similarity=0.094 Sum_probs=81.0
Q ss_pred CHHHHHHHHHHHHHcCCCceecc----------cccCCCchHHHHHHHHhcCCCC-ceEEEecccccccCccccccCCCH
Q 025312 39 SEEDGISMIKHAFSKGITFFDTA----------DVYGQNANEVLLGKALKQLPRE-KIQVATKFGIAGIGVAGVIVKGAP 107 (255)
Q Consensus 39 ~~~~~~~~l~~a~~~Gi~~~DtA----------~~Yg~g~se~~lg~~l~~~~R~-~~~i~tK~~~~~~~~~~~~~~~~~ 107 (255)
+.++..+..+.+.+.|+..||.- ..|+ .+.+.+.+.+++.++. ++-|.-|+.+..
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~--~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~------------ 165 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFG--TDPEAVAEIVKAVKKATDVPVIVKLTPNV------------ 165 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCccccc--CCHHHHHHHHHHHHhccCCCEEEEeCCCc------------
Confidence 56777888888889999999852 1232 2566776777653222 677888885321
Q ss_pred HHHHHHHHHHHhHcCCCcceEEe------cccCC--C-----------CCCHHHHHHHHHHHHHhCCcceEEcCCC-CHH
Q 025312 108 DYVRSCCEASLKRLDVDYIDLYY------QHRVD--T-----------SVPIEETIGEMKKLVEEGKIKYIGLSEA-SPG 167 (255)
Q Consensus 108 ~~i~~~~~~sL~~L~~d~iDl~~------lH~~~--~-----------~~~~~~~~~~l~~l~~~G~vr~iGvsn~-~~~ 167 (255)
+.+ ..+-+.++..|.|.+++.- +|.-. + .....-.++.+.++++.=.+--||+... +++
T Consensus 166 ~~~-~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~ 244 (296)
T cd04740 166 TDI-VEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGE 244 (296)
T ss_pred hhH-HHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHH
Confidence 122 2333456778888776631 11100 0 0001125677777777666888998887 788
Q ss_pred HHHHHhhcCCceEeecc
Q 025312 168 TIRRAHAVHPITAVQME 184 (255)
Q Consensus 168 ~l~~~~~~~~~~~~q~~ 184 (255)
.+.+++... .+.+|+-
T Consensus 245 da~~~l~~G-Ad~V~ig 260 (296)
T cd04740 245 DALEFLMAG-ASAVQVG 260 (296)
T ss_pred HHHHHHHcC-CCEEEEc
Confidence 898888754 6777764
No 22
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=83.74 E-value=4.1 Score=33.07 Aligned_cols=67 Identities=19% Similarity=0.238 Sum_probs=44.7
Q ss_pred HhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHHhCCcceEEcC-CCCHHHHHHHhhcCCceEeeccCC
Q 025312 118 LKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPGTIRRAHAVHPITAVQMEWS 186 (255)
Q Consensus 118 L~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~vr~iGvs-n~~~~~l~~~~~~~~~~~~q~~~n 186 (255)
+..+|.|++-+++.......... +..+.+.+.. .+.+..+||. |-+++.+.++++...++++|++-+
T Consensus 19 ~~~~Gad~iGfI~~~~S~R~V~~-~~a~~i~~~~-~~~i~~VgVf~~~~~~~i~~~~~~~~~d~vQLHg~ 86 (210)
T PRK01222 19 AAELGADAIGFVFYPKSPRYVSP-EQAAELAAAL-PPFVKVVGVFVNASDEEIDEIVETVPLDLLQLHGD 86 (210)
T ss_pred HHHcCCCEEEEccCCCCCCcCCH-HHHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 34689999998743322222333 3333333332 3568899998 558899999998899999999654
No 23
>PRK05414 urocanate hydratase; Provisional
Probab=82.75 E-value=26 Score=32.31 Aligned_cols=151 Identities=16% Similarity=0.185 Sum_probs=94.3
Q ss_pred CCCcccccceecccccCCCCCCCCCHHHHHHHHHHHHHcCCCcee--ccccc---CC-----CchHHHHHHHHhc---CC
Q 025312 15 TQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFD--TADVY---GQ-----NANEVLLGKALKQ---LP 81 (255)
Q Consensus 15 ~~g~~vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~a~~~Gi~~~D--tA~~Y---g~-----g~se~~lg~~l~~---~~ 81 (255)
+|-..-|++-+-...+-..|.+ -+-+...-+.|+.-+- ||.+| |+ |.-|.++.-+-+. ..
T Consensus 93 ~th~~APRVliaN~~lVp~wa~-------~e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~a~rk~f~g~L 165 (556)
T PRK05414 93 KTHPDAPRVLIANSNLVPHWAN-------WEHFNELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFAEAARQHFGGDL 165 (556)
T ss_pred cCCCCCCeEEEEcCccccCCCC-------HHHHHHHHHcccccccCccccceeEEcCceeeecHHHHHHHHHHHhcCCCC
Confidence 3444455555544433333432 2445666778887663 55544 22 5567766555443 24
Q ss_pred CCceEEEecccccccCcc---------ccccCCCHHHHHHHHHHHHhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHH
Q 025312 82 REKIQVATKFGIAGIGVA---------GVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVE 152 (255)
Q Consensus 82 R~~~~i~tK~~~~~~~~~---------~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~ 152 (255)
+..+||++-+|.-...++ .-....++..|+ +|+.+.|+|.+ ..+++++++..++.++
T Consensus 166 ~G~~~lTaGLGGMgGAQPlA~~mag~v~i~vEvd~~ri~-------kR~~~gyld~~-------~~~Ldeal~~~~~a~~ 231 (556)
T PRK05414 166 AGRLVLTAGLGGMGGAQPLAATMAGAVCLAVEVDESRID-------KRLRTGYLDEK-------ADDLDEALALAEEAKA 231 (556)
T ss_pred ceeEEEEecCCccccccHHHHHhcCceEEEEEECHHHHH-------HHHhCCcceeE-------cCCHHHHHHHHHHHHH
Confidence 677899988864332111 012334455554 57888998853 2458899999999999
Q ss_pred hCCcceEEcCCCCHHHHHHHhhc-CC--ceEeeccCC
Q 025312 153 EGKIKYIGLSEASPGTIRRAHAV-HP--ITAVQMEWS 186 (255)
Q Consensus 153 ~G~vr~iGvsn~~~~~l~~~~~~-~~--~~~~q~~~n 186 (255)
+|+..+||+-..-.+.+.++.+. .. +..-|...|
T Consensus 232 ~~~~~SIg~~GNaadv~~~l~~~~i~pDlvtDQTSaH 268 (556)
T PRK05414 232 AGEPLSIGLLGNAADVLPELVRRGIRPDLVTDQTSAH 268 (556)
T ss_pred cCCceEEEEeccHHHHHHHHHHcCCCCCccCcCcccc
Confidence 99999999999988999888876 23 444466553
No 24
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=81.66 E-value=33 Score=31.53 Aligned_cols=151 Identities=17% Similarity=0.199 Sum_probs=94.2
Q ss_pred CCCcccccceecccccCCCCCCCCCHHHHHHHHHHHHHcCCCcee--ccccc---CC-----CchHHHHHHHHhc---CC
Q 025312 15 TQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFD--TADVY---GQ-----NANEVLLGKALKQ---LP 81 (255)
Q Consensus 15 ~~g~~vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~a~~~Gi~~~D--tA~~Y---g~-----g~se~~lg~~l~~---~~ 81 (255)
+|-..-|++-+-...+-..|.+ -+-+....+.|+.-+- ||.+| |+ |.-|.++..+-+. ..
T Consensus 84 ~th~~APRVliaNs~lVp~wa~-------~e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~f~~~L 156 (545)
T TIGR01228 84 KTHENAPRVLIANSNLVPHWAD-------WEHFHELEAKGLMMYGQMTAGSWIYIGTQGILQGTYETFAELARQHFGGSL 156 (545)
T ss_pred cCCCCCCeEEEEcCccccCCCC-------HHHHHHHHHcccccccCccccceEEEcCcceeecHHHHHHHHHHHhcCCCC
Confidence 4444556655544433333432 2445666778887663 55444 22 5567766554443 24
Q ss_pred CCceEEEecccccccCcc---------ccccCCCHHHHHHHHHHHHhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHH
Q 025312 82 REKIQVATKFGIAGIGVA---------GVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVE 152 (255)
Q Consensus 82 R~~~~i~tK~~~~~~~~~---------~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~ 152 (255)
+..+|+++-+|.-...++ .-....++..|+ +|+.+.|+|.+ ..+++++++..++.++
T Consensus 157 ~G~~~lTaGLGGMgGAQPlA~~mag~v~i~vEvd~~ri~-------kR~~~gyld~~-------~~~ldeal~~~~~a~~ 222 (545)
T TIGR01228 157 KGKWVLTAGLGGMGGAQPLAVTMNGGVSIAVEVDESRID-------KRLETKYCDEQ-------TDSLDEALARAEEAKA 222 (545)
T ss_pred ceeEEEEeCCCccccccHHHHHHcCceEEEEEECHHHHH-------HHHhcCcceeE-------cCCHHHHHHHHHHHHH
Confidence 677888888764332110 011334455554 57888998853 2458899999999999
Q ss_pred hCCcceEEcCCCCHHHHHHHhhc-CC--ceEeeccCC
Q 025312 153 EGKIKYIGLSEASPGTIRRAHAV-HP--ITAVQMEWS 186 (255)
Q Consensus 153 ~G~vr~iGvsn~~~~~l~~~~~~-~~--~~~~q~~~n 186 (255)
+|+..+||+-..-.+.+.++.+. .. +..-|...|
T Consensus 223 ~~~~~SIg~~GNaadv~~~l~~r~i~pDlvtDQTSaH 259 (545)
T TIGR01228 223 EGKPISIGLLGNAAEVLPELLKRGVVPDVVTDQTSAH 259 (545)
T ss_pred cCCceEEEeeccHHHHHHHHHHcCCCCCCcCCCCccc
Confidence 99999999999988999998875 23 444466553
No 25
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=80.96 E-value=9 Score=34.24 Aligned_cols=83 Identities=12% Similarity=0.163 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHHcCCCceecccccCCCchHHHHHHHHhcCCCCceEEEecccccccCccccccCCCHHHHHHHHHHHH
Q 025312 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASL 118 (255)
Q Consensus 39 ~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL 118 (255)
+......++++|++.|++++|||..... ...+... -.+..+.+..-+|..+ ..+--.....+++--
T Consensus 77 p~~~~~~i~ka~i~~gv~yvDts~~~~~---~~~~~~~---a~~Agit~v~~~G~dP--------Gi~nv~a~~a~~~~~ 142 (389)
T COG1748 77 PPFVDLTILKACIKTGVDYVDTSYYEEP---PWKLDEE---AKKAGITAVLGCGFDP--------GITNVLAAYAAKELF 142 (389)
T ss_pred CchhhHHHHHHHHHhCCCEEEcccCCch---hhhhhHH---HHHcCeEEEcccCcCc--------chHHHHHHHHHHHhh
Confidence 3455568999999999999999986652 1222221 1334556666555432 122222222222222
Q ss_pred hHcCCCcceEEecccCCCC
Q 025312 119 KRLDVDYIDLYYQHRVDTS 137 (255)
Q Consensus 119 ~~L~~d~iDl~~lH~~~~~ 137 (255)
+ .++++|+|..+.|++.
T Consensus 143 ~--~i~si~iy~g~~g~~~ 159 (389)
T COG1748 143 D--EIESIDIYVGGLGEHG 159 (389)
T ss_pred c--cccEEEEEEecCCCCC
Confidence 2 5899999999998765
No 26
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=80.74 E-value=8.9 Score=29.91 Aligned_cols=99 Identities=11% Similarity=0.089 Sum_probs=65.6
Q ss_pred HcCCCceecccccCC-------CchHHHHHHHHhcCCCCceEEEecccccccCccc--cccCCCHHHHHHHHHHHHhHcC
Q 025312 52 SKGITFFDTADVYGQ-------NANEVLLGKALKQLPREKIQVATKFGIAGIGVAG--VIVKGAPDYVRSCCEASLKRLD 122 (255)
Q Consensus 52 ~~Gi~~~DtA~~Yg~-------g~se~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~--~~~~~~~~~i~~~~~~sL~~L~ 122 (255)
..++-++||-..-.. |+.+..+-..|.+ .|-+++|.++-...|..++. .....++..+.+.+++.|++-+
T Consensus 78 a~~v~fiDTD~itT~~~~~~y~gr~~P~~~~~i~~-~r~DL~lLl~p~t~wvaDG~R~~~~~~~R~~F~~~l~~~L~~~~ 156 (187)
T COG3172 78 ANKVAFIDTDFLTTQAFCKKYEGREHPFLQALIAE-YRFDLTLLLEPNTPWVADGLRSLGSSVQRQEFQNLLEQMLEENN 156 (187)
T ss_pred CCceEEEeccHHHHHHHHHHHcccCCchHHHHHhh-cccceEEEcCCCCceeCCCccccccHhHHHHHHHHHHHHHHHhC
Confidence 448999998652211 3344455566664 67788887775444433321 2234578889999999999998
Q ss_pred CCcceEEecccCCCCCCHHHHHHHHHHHHHhC
Q 025312 123 VDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG 154 (255)
Q Consensus 123 ~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G 154 (255)
..|+ -|..++....+....++.+++...+
T Consensus 157 ~~~v---~i~~~~y~eR~~~~~~aV~ell~~~ 185 (187)
T COG3172 157 IPFV---VIEGEDYLERYLQAVEAVEELLGEK 185 (187)
T ss_pred CcEE---EEcCCCHHHHHHHHHHHHHHHHhcc
Confidence 7764 4566666666777888888888776
No 27
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=80.52 E-value=14 Score=30.66 Aligned_cols=112 Identities=22% Similarity=0.233 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHHHHHcCCCceecccccCC----------------C--chHHHHHHHHhcCCCCceEEEecccccccCcc
Q 025312 38 VSEEDGISMIKHAFSKGITFFDTADVYGQ----------------N--ANEVLLGKALKQLPREKIQVATKFGIAGIGVA 99 (255)
Q Consensus 38 ~~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~----------------g--~se~~lg~~l~~~~R~~~~i~tK~~~~~~~~~ 99 (255)
.+.++-.++.+.|-+.|+.|+=|...-.. + .+-.++-+.-+ ....++|+|=.
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~--tgkPvIlSTG~-------- 122 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYIAK--TGKPVILSTGM-------- 122 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHT--T-S-EEEE-TT--------
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHHHH--hCCcEEEECCC--------
Confidence 47888999999999999999866543221 0 02222222221 33446666643
Q ss_pred ccccCCCHHHHHHHHHHHHhHcCCCcceEEecccCCCC-CCHHH-HHHHHHHHHHhCCcceEEcCCCCHHH
Q 025312 100 GVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS-VPIEE-TIGEMKKLVEEGKIKYIGLSEASPGT 168 (255)
Q Consensus 100 ~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~-~~~~~-~~~~l~~l~~~G~vr~iGvsn~~~~~ 168 (255)
.+.+.|.++++...++-+ -|+.++|..... .+.++ -++.+..|++.=- --||.|.|+...
T Consensus 123 -----stl~EI~~Av~~~~~~~~---~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~g~ 184 (241)
T PF03102_consen 123 -----STLEEIERAVEVLREAGN---EDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG-VPVGYSDHTDGI 184 (241)
T ss_dssp -------HHHHHHHHHHHHHHCT-----EEEEEE-SSSS--GGG--TTHHHHHHHHST-SEEEEEE-SSSS
T ss_pred -----CCHHHHHHHHHHHHhcCC---CCEEEEecCCCCCCChHHcChHHHHHHHHhcC-CCEEeCCCCCCc
Confidence 466778888877655544 689999998543 33333 3667777775544 578999998753
No 28
>PRK13796 GTPase YqeH; Provisional
Probab=78.56 E-value=47 Score=29.39 Aligned_cols=120 Identities=14% Similarity=0.181 Sum_probs=77.7
Q ss_pred CCHHHHHHHHHHHHHcC---CCceecccccCCCchHHHHHHHHhcCCCCceEEEecccccccCccccccCCCHHHHHHHH
Q 025312 38 VSEEDGISMIKHAFSKG---ITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCC 114 (255)
Q Consensus 38 ~~~~~~~~~l~~a~~~G---i~~~DtA~~Yg~g~se~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~ 114 (255)
.+.++..++++..-+.- +-.+|..+.-+. -...+.+.+. .+.-++|.+|.-.... ....+.+.+-+
T Consensus 54 ~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s--~~~~L~~~~~--~kpviLViNK~DLl~~-------~~~~~~i~~~l 122 (365)
T PRK13796 54 LTDDDFLKLLNGIGDSDALVVNVVDIFDFNGS--WIPGLHRFVG--NNPVLLVGNKADLLPK-------SVKKNKVKNWL 122 (365)
T ss_pred CCHHHHHHHHHhhcccCcEEEEEEECccCCCc--hhHHHHHHhC--CCCEEEEEEchhhCCC-------ccCHHHHHHHH
Confidence 46667777777776655 345676654432 2333444332 4556889999854221 13455666666
Q ss_pred HHHHhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHHhCCcceEEcCCCCHHHH
Q 025312 115 EASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTI 169 (255)
Q Consensus 115 ~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn~~~~~l 169 (255)
+...+.+|....|++++..-. ...++++.+.+.+..+.+.+--+|.+|..-..|
T Consensus 123 ~~~~k~~g~~~~~v~~vSAk~-g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTL 176 (365)
T PRK13796 123 RQEAKELGLRPVDVVLISAQK-GHGIDELLEAIEKYREGRDVYVVGVTNVGKSTL 176 (365)
T ss_pred HHHHHhcCCCcCcEEEEECCC-CCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHH
Confidence 666777786555777765443 345788888888887788899999999976543
No 29
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=77.91 E-value=20 Score=29.41 Aligned_cols=122 Identities=15% Similarity=0.226 Sum_probs=70.2
Q ss_pred CCHHHHHHHHHHHHHcCCCceecccccCCCchHHHHHHHHhcCCCCceEEEecccccccCccccccCCCHHHHHHHHHHH
Q 025312 38 VSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEAS 117 (255)
Q Consensus 38 ~~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 117 (255)
++.++..+++....++||..|++....-.....+.+.+..+..+. ..+.+.. ....+.++..++..
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~~--~~~~~~~------------~~~~~~i~~~~~~~ 76 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREALPN--ARLQALC------------RANEEDIERAVEAA 76 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHHS--SEEEEEE------------ESCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhhcc--cccceee------------eehHHHHHHHHHhh
Confidence 478889999999999999999999333221233445544443232 2222222 12445566666544
Q ss_pred HhHcCCCcceEEecccC---------CCCCCHHHHHHHHHHHHHhCCcceEEcCCC---CHHHHHHHhh
Q 025312 118 LKRLDVDYIDLYYQHRV---------DTSVPIEETIGEMKKLVEEGKIKYIGLSEA---SPGTIRRAHA 174 (255)
Q Consensus 118 L~~L~~d~iDl~~lH~~---------~~~~~~~~~~~~l~~l~~~G~vr~iGvsn~---~~~~l~~~~~ 174 (255)
...|.+.+.++.-=++ +....++...+.++.+++.|.--.+++-.. +++.+.++.+
T Consensus 77 -~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~ 144 (237)
T PF00682_consen 77 -KEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAE 144 (237)
T ss_dssp -HHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHH
T ss_pred -HhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHH
Confidence 4678887776542221 000113456677788888998888887543 5555555433
No 30
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=76.03 E-value=17 Score=27.39 Aligned_cols=64 Identities=11% Similarity=0.190 Sum_probs=46.1
Q ss_pred CCCceEEEecccccccCccccccCCCHHHHHHHHHHHHhHcC--CCcceEEecccCCCCCCHHHHHHHHHHHHHhC
Q 025312 81 PREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLD--VDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG 154 (255)
Q Consensus 81 ~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~--~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G 154 (255)
+|=-+.|+-|++.. ..+..|++.+.++.+.+. +...|++++.......++.++...|..+.++-
T Consensus 46 ~RlG~sVSKKvg~A----------V~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~~~f~~L~~~l~~~~~~~ 111 (138)
T PRK00730 46 CKVGITVSKKFGKA----------HQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQPDFLKLLQDFLQQIPEA 111 (138)
T ss_pred ceEEEEEecccccc----------hhHHHHHHHHHHHHHHhhcccCCceEEEEeccccCCCHHHHHHHHHHHHHHH
Confidence 45567888887642 466677777777777653 45789999999887677888777777766653
No 31
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=75.47 E-value=23 Score=31.81 Aligned_cols=60 Identities=15% Similarity=0.052 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHHHhHcCCCcceEEeccc-CCCC------------CCHH---HHH-HHHHHHHHhCCcceEEcCCCCH
Q 025312 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHR-VDTS------------VPIE---ETI-GEMKKLVEEGKIKYIGLSEASP 166 (255)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH~-~~~~------------~~~~---~~~-~~l~~l~~~G~vr~iGvsn~~~ 166 (255)
-+.+.+.+.++..+ +|+.++|.++.+.- |... .+.+ +.+ .+.+.|.+.|-. ++++|||..
T Consensus 179 qt~e~~~~tl~~~~-~l~p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~yeisnfa~ 255 (400)
T PRK07379 179 QTLEDWQASLEAAI-ALNPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGYE-HYEISNYAK 255 (400)
T ss_pred CCHHHHHHHHHHHH-cCCCCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCc-eeeeeheEC
Confidence 46677777777655 47888888877752 2100 0111 122 366678888875 689999963
No 32
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=75.20 E-value=24 Score=31.33 Aligned_cols=60 Identities=17% Similarity=0.103 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHHHhHcCCCcceEEeccc-CCC------------CCCHH---HH-HHHHHHHHHhCCcceEEcCCCCH
Q 025312 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHR-VDT------------SVPIE---ET-IGEMKKLVEEGKIKYIGLSEASP 166 (255)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH~-~~~------------~~~~~---~~-~~~l~~l~~~G~vr~iGvsn~~~ 166 (255)
-+.+.+.+.++..+ .|+.++|.+|.+.- |.. ..+.+ +. ..+.+.|.+.|.. ++++|||..
T Consensus 167 qt~~~~~~~l~~~~-~l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~yeis~fa~ 243 (370)
T PRK06294 167 QSLSDFIVDLHQAI-TLPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGFT-RYELASYAK 243 (370)
T ss_pred CCHHHHHHHHHHHH-ccCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCCC-eeeeeeeeC
Confidence 47888888888776 48999999988863 211 00111 22 2356678888875 699999964
No 33
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=75.03 E-value=52 Score=28.09 Aligned_cols=132 Identities=13% Similarity=0.072 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHHHHcC-CCceec---cccc-----CCCchHHHHHHHHhcCCC-CceEEEecccccccCccccccCCCHH
Q 025312 39 SEEDGISMIKHAFSKG-ITFFDT---ADVY-----GQNANEVLLGKALKQLPR-EKIQVATKFGIAGIGVAGVIVKGAPD 108 (255)
Q Consensus 39 ~~~~~~~~l~~a~~~G-i~~~Dt---A~~Y-----g~g~se~~lg~~l~~~~R-~~~~i~tK~~~~~~~~~~~~~~~~~~ 108 (255)
+.++..+....+.+.| +..||. +++. ..+...+.+-+.+++.++ -++-|..|+.... +
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~------------~ 169 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNV------------T 169 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCc------------h
Confidence 5677788888888898 899975 2211 113356677777765322 2677888985321 1
Q ss_pred HHHHHHHHHHhHcCCCcceEEe-cccC--CCC----------------CCHHHHHHHHHHHHHhCCcceEEcCCC-CHHH
Q 025312 109 YVRSCCEASLKRLDVDYIDLYY-QHRV--DTS----------------VPIEETIGEMKKLVEEGKIKYIGLSEA-SPGT 168 (255)
Q Consensus 109 ~i~~~~~~sL~~L~~d~iDl~~-lH~~--~~~----------------~~~~~~~~~l~~l~~~G~vr~iGvsn~-~~~~ 168 (255)
.+. .+-+.|+..|.|.+++.- ++.. +.. ....-.++.+.++++.=.+--||+... +++.
T Consensus 170 ~~~-~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~d 248 (301)
T PRK07259 170 DIV-EIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAED 248 (301)
T ss_pred hHH-HHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHH
Confidence 222 334457788888776532 1111 000 000114666677777656888998887 7888
Q ss_pred HHHHhhcCCceEeecc
Q 025312 169 IRRAHAVHPITAVQME 184 (255)
Q Consensus 169 l~~~~~~~~~~~~q~~ 184 (255)
+.+++... .+.+|+-
T Consensus 249 a~~~l~aG-Ad~V~ig 263 (301)
T PRK07259 249 AIEFIMAG-ASAVQVG 263 (301)
T ss_pred HHHHHHcC-CCceeEc
Confidence 88888644 5777763
No 34
>COG1801 Uncharacterized conserved protein [Function unknown]
Probab=73.99 E-value=48 Score=27.98 Aligned_cols=108 Identities=6% Similarity=-0.078 Sum_probs=61.3
Q ss_pred cceecccccCCCCCCCCCHHHHHHHHHHHHHcCCCceec-ccccCCCchHHHHHHHHhcCCCCceEEEecccccccCccc
Q 025312 22 KLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDT-ADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAG 100 (255)
Q Consensus 22 ~lg~Gt~~~~~~~~~~~~~~~~~~~l~~a~~~Gi~~~Dt-A~~Yg~g~se~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~ 100 (255)
.||++.|.....-+...+++...+-....+...+|.+.. +..|.. .+++.+-+|.+ ...+++..+-|+...-.
T Consensus 4 ~IG~sGW~~~~w~~~~yp~~~~~~~~L~~y~~~f~~VEiN~TFYa~-p~~~t~~~W~~-~~p~~FrFsvK~~~~iT---- 77 (263)
T COG1801 4 YIGTSGWSYPDWEGLFYPEGLKKKEFLAYYASHFNTVEINSTFYAP-PSPETVLRWAE-ETPDDFRFSVKAPRAIT---- 77 (263)
T ss_pred EEeecCCCcccccccccCcccchhhHHHHHhccCCEEEECCcccCC-CCHHHHHHHHH-hCCCCeEEEEEeccccc----
Confidence 466666665442222233333333334445555666542 224543 36778888887 47789999999864321
Q ss_pred cccCCCH---HHHHHHHHHHHhHcCCCcceEEecccCCCC
Q 025312 101 VIVKGAP---DYVRSCCEASLKRLDVDYIDLYYQHRVDTS 137 (255)
Q Consensus 101 ~~~~~~~---~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~ 137 (255)
+..... ..+.+.+.+-++-|| +.+..+++..|..-
T Consensus 78 -H~~~l~~~~~~~~~~~~~~~~~L~-~klg~il~Q~Ppsf 115 (263)
T COG1801 78 -HQRRLKECDFELWEFFLEPLAPLG-ERLGPILFQLPPSF 115 (263)
T ss_pred -chhhhccchHHHHHHHHHHHHhhh-cccceEEEecCCcc
Confidence 111222 234444555555676 58999999998654
No 35
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=73.45 E-value=62 Score=28.21 Aligned_cols=116 Identities=18% Similarity=0.196 Sum_probs=74.1
Q ss_pred CCHHHHHHHHHHHHHcCCCceecccccCC----------------Cc--hHHHHHHHHhcCCCCceEEEecccccccCcc
Q 025312 38 VSEEDGISMIKHAFSKGITFFDTADVYGQ----------------NA--NEVLLGKALKQLPREKIQVATKFGIAGIGVA 99 (255)
Q Consensus 38 ~~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~----------------g~--se~~lg~~l~~~~R~~~~i~tK~~~~~~~~~ 99 (255)
.+.+.-..+.+.|-+.|+-++=|.-.+.. |. ...++-...+ ..+.+.++|=.
T Consensus 87 ~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~--~~kPiIlSTGm-------- 156 (347)
T COG2089 87 TPLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAK--KGKPIILSTGM-------- 156 (347)
T ss_pred CCHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHh--cCCCEEEEccc--------
Confidence 46677788999999999988865544432 11 2333333333 23367777754
Q ss_pred ccccCCCHHHHHHHHHHHHhHcCCCcceEEecccCCCC-CCHHHH-HHHHHHHHHhCCcceEEcCCCCHHHHHHH
Q 025312 100 GVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS-VPIEET-IGEMKKLVEEGKIKYIGLSEASPGTIRRA 172 (255)
Q Consensus 100 ~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~-~~~~~~-~~~l~~l~~~G~vr~iGvsn~~~~~l~~~ 172 (255)
.+-+.|.++++...++=. .|+.++|..... .+++++ +..|..|++.= -.-||+|.|+..-+..+
T Consensus 157 -----a~~~ei~~av~~~r~~g~---~~i~LLhC~s~YPap~ed~NL~~i~~l~~~F-n~~vGlSDHT~g~~a~l 222 (347)
T COG2089 157 -----ATIEEIEEAVAILRENGN---PDIALLHCTSAYPAPFEDVNLKAIPKLAEAF-NAIVGLSDHTLGILAPL 222 (347)
T ss_pred -----ccHHHHHHHHHHHHhcCC---CCeEEEEecCCCCCCHHHhhHHHHHHHHHHh-CCccccccCccchhHHH
Confidence 456678887776555443 399999987543 445543 66666666664 45799999998755444
No 36
>PRK05660 HemN family oxidoreductase; Provisional
Probab=72.83 E-value=32 Score=30.57 Aligned_cols=60 Identities=10% Similarity=-0.011 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHHHhHcCCCcceEEeccc-CCCC--------CCHHHHH----HHHHHHHHhCCcceEEcCCCCH
Q 025312 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHR-VDTS--------VPIEETI----GEMKKLVEEGKIKYIGLSEASP 166 (255)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH~-~~~~--------~~~~~~~----~~l~~l~~~G~vr~iGvsn~~~ 166 (255)
-+.+.+.+.++..++ +++++|.+|.+-- |+.. .+.++.| .+.+.|.+.|. ..+++|||..
T Consensus 171 qt~~~~~~~l~~~~~-l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yei~~fa~ 243 (378)
T PRK05660 171 QSLEEALDDLRQAIA-LNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGY-QQYETSAYAK 243 (378)
T ss_pred CCHHHHHHHHHHHHh-cCCCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCC-cEeecccccC
Confidence 467777777776554 8888888877642 2110 1112222 23445666776 4589998854
No 37
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=72.03 E-value=26 Score=32.01 Aligned_cols=60 Identities=18% Similarity=0.132 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHHhHcCCCcceEEeccc-CCC------------CC-CHHH---H-HHHHHHHHHhCCcceEEcCCCCH
Q 025312 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHR-VDT------------SV-PIEE---T-IGEMKKLVEEGKIKYIGLSEASP 166 (255)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH~-~~~------------~~-~~~~---~-~~~l~~l~~~G~vr~iGvsn~~~ 166 (255)
-+.+.+++.++..+ .|+.++|++|.+.- |.. .. +.++ . -.+.+.|.+.|. +.+++|||..
T Consensus 227 qT~e~~~~~l~~~~-~l~~~~is~y~L~~~pgT~l~~~~~~g~l~~~~~~~~~~~my~~~~~~L~~~Gy-~~yeis~far 304 (449)
T PRK09058 227 QTPEIWQQDLAIVR-DLGLDGVDLYALNLLPGTPLAKAVEKGKLPPPATPAERADMYAYGVEFLAKAGW-RQLSNSHWAR 304 (449)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEEeccccCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHCCC-eEEeeeeeec
Confidence 47788888877765 48999999998863 211 00 1122 2 245567788887 5699999964
No 38
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=69.61 E-value=52 Score=29.77 Aligned_cols=109 Identities=17% Similarity=0.217 Sum_probs=62.4
Q ss_pred cccceecccccCC----CCCCCCCHHHHHHHHHHHHHcCCCceecccccCCCchHHHHHHHHhcCCCCceEEEecccccc
Q 025312 20 VSKLGYGCMNLSG----GYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAG 95 (255)
Q Consensus 20 vs~lg~Gt~~~~~----~~~~~~~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~R~~~~i~tK~~~~~ 95 (255)
|.++.+|...|.. ..+..-+.+++.+.+..+.+.|+.-+-.-=.||-
T Consensus 148 vNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIygl----------------------------- 198 (416)
T COG0635 148 VNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYGL----------------------------- 198 (416)
T ss_pred CCEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC-----------------------------
Confidence 3467777766643 1122224456666666666666654433233431
Q ss_pred cCccccccCCCHHHHHHHHHHHHhHcCCCcceEEec-ccCCCC-----------CCHH---HHHHH-HHHHHHhCCcceE
Q 025312 96 IGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQ-HRVDTS-----------VPIE---ETIGE-MKKLVEEGKIKYI 159 (255)
Q Consensus 96 ~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~l-H~~~~~-----------~~~~---~~~~~-l~~l~~~G~vr~i 159 (255)
+.-+.+.+.+.+++.+ .|+.|+|.+|.+ |-|... .+.+ +.++. .+.|.+.|. +.+
T Consensus 199 -------P~QT~~~~~~~l~~a~-~l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~y 269 (416)
T COG0635 199 -------PGQTLESLKEDLEQAL-ELGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGY-RQY 269 (416)
T ss_pred -------CCCCHHHHHHHHHHHH-hCCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCC-cEE
Confidence 1236677777777665 467999999887 433110 1111 34444 445566666 899
Q ss_pred EcCCCCH
Q 025312 160 GLSEASP 166 (255)
Q Consensus 160 Gvsn~~~ 166 (255)
|+|||..
T Consensus 270 eisnfa~ 276 (416)
T COG0635 270 EISNFAK 276 (416)
T ss_pred eechhcC
Confidence 9999976
No 39
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=69.12 E-value=19 Score=29.19 Aligned_cols=64 Identities=17% Similarity=0.221 Sum_probs=43.8
Q ss_pred hHcCCCcceEEecccCCCCCCHHHHHHHHHHHHHhCC-cceEEcCC-CCHHHHHHHhhcCCceEeeccCC
Q 025312 119 KRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSE-ASPGTIRRAHAVHPITAVQMEWS 186 (255)
Q Consensus 119 ~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~-vr~iGvsn-~~~~~l~~~~~~~~~~~~q~~~n 186 (255)
..+|.||+-+++.-........ +...++.+.-. +..+||.. .+.+.+.++++..+++.+|++-.
T Consensus 19 ~~~gad~iG~If~~~SpR~Vs~----~~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~~ld~VQlHG~ 84 (208)
T COG0135 19 AKAGADYIGFIFVPKSPRYVSP----EQAREIASAVPKVKVVGVFVNESIEEILEIAEELGLDAVQLHGD 84 (208)
T ss_pred HHcCCCEEEEEEcCCCCCcCCH----HHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHhcCCCEEEECCC
Confidence 4689999888766532222333 33333444433 78999984 47788999999999999999765
No 40
>PLN02363 phosphoribosylanthranilate isomerase
Probab=67.67 E-value=23 Score=29.74 Aligned_cols=75 Identities=19% Similarity=0.286 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHHhCCcceEEcC-CCCHHHHHHHhhcCCceEeecc
Q 025312 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPGTIRRAHAVHPITAVQME 184 (255)
Q Consensus 106 ~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~vr~iGvs-n~~~~~l~~~~~~~~~~~~q~~ 184 (255)
+.+.++.+. ++|.||+-+++.......... +..+.+.+......++.+||. |-+++.+.++++..+++++|+.
T Consensus 56 ~~eda~~a~-----~~GaD~iGfIf~~~SpR~Vs~-e~a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~~~ld~VQLH 129 (256)
T PLN02363 56 SARDAAMAV-----EAGADFIGMILWPKSKRSISL-SVAKEISQVAREGGAKPVGVFVDDDANTILRAADSSDLELVQLH 129 (256)
T ss_pred cHHHHHHHH-----HcCCCEEEEecCCCCCCcCCH-HHHHHHHHhccccCccEEEEEeCCCHHHHHHHHHhcCCCEEEEC
Confidence 455555443 589999998754332222333 334444443333246679996 7788999999988999999997
Q ss_pred CC
Q 025312 185 WS 186 (255)
Q Consensus 185 ~n 186 (255)
-+
T Consensus 130 G~ 131 (256)
T PLN02363 130 GN 131 (256)
T ss_pred CC
Confidence 53
No 41
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=67.54 E-value=62 Score=25.85 Aligned_cols=130 Identities=11% Similarity=0.005 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHHHHcCCCceecccccCCCchHHHHHHHHhcC----CCCceEEEecccccccCccccccCCCHHHHHHHH
Q 025312 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQL----PREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCC 114 (255)
Q Consensus 39 ~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~----~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~ 114 (255)
+++++.+++..+++.|+...|.- +..+..++++. .++++++.-= ....+.+++.+
T Consensus 10 d~~~~~~~v~~~l~~g~~~~~i~--------~~~l~p~m~~iG~~w~~gei~va~~-------------~~a~~~~~~~l 68 (197)
T TIGR02370 10 EEDDVVEGAQKALDAGIDPIELI--------EKGLMAGMGVVGKLFEDGELFLPHV-------------MMSADAMLAGI 68 (197)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHH--------HHHHHHHHHHHHHHHcCCCccHHHH-------------HHHHHHHHHHH
Confidence 78899999999999998877632 23344444430 2233332111 12344455555
Q ss_pred HHHHhHcCCC----cceEEecccCCCCCCHHHHHHHHHHHHHhCC-cceEEcCCCCHHHHHHHhhcCCceEeeccCCcCC
Q 025312 115 EASLKRLDVD----YIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWT 189 (255)
Q Consensus 115 ~~sL~~L~~d----~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~-vr~iGvsn~~~~~l~~~~~~~~~~~~q~~~n~~~ 189 (255)
......+..+ .---+++-.+..+.+--...-.-.-++..|. |.++|. +-+++.+.+.+....|+++.+.+....
T Consensus 69 ~~l~~~~~~~~~~~~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~-~vp~e~~v~~~~~~~pd~v~lS~~~~~ 147 (197)
T TIGR02370 69 KVLTPEMEKAVETEVLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGR-DVPIDTVVEKVKKEKPLMLTGSALMTT 147 (197)
T ss_pred HHHHHHhhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCC-CCCHHHHHHHHHHcCCCEEEEcccccc
Confidence 5554444321 1112233333222222223333334566676 667774 556677777777778888888776544
Q ss_pred c
Q 025312 190 R 190 (255)
Q Consensus 190 ~ 190 (255)
.
T Consensus 148 ~ 148 (197)
T TIGR02370 148 T 148 (197)
T ss_pred C
Confidence 4
No 42
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=67.48 E-value=21 Score=32.74 Aligned_cols=66 Identities=18% Similarity=0.214 Sum_probs=44.4
Q ss_pred HhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHHhCCcceEEcC-CCCHHHHHHHhhcCCceEeeccCCc
Q 025312 118 LKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPGTIRRAHAVHPITAVQMEWSL 187 (255)
Q Consensus 118 L~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~vr~iGvs-n~~~~~l~~~~~~~~~~~~q~~~n~ 187 (255)
...+|.|++-+++........+.+. .+.+.+... ++.+||- |-+++.+.++.+...++++|++-+.
T Consensus 273 a~~~GaD~lGfIf~~~SpR~V~~~~-a~~i~~~l~---v~~VgVfv~~~~~~i~~i~~~~~lD~vQLHG~e 339 (454)
T PRK09427 273 AYDAGAVYGGLIFVEKSPRYVSLEQ-AQEIIAAAP---LRYVGVFRNADIEDIVDIAKQLSLAAVQLHGDE 339 (454)
T ss_pred HHhCCCCEEeeEeCCCCCCCCCHHH-HHHHHHhCC---CCEEEEEeCCCHHHHHHHHHHcCCCEEEeCCCC
Confidence 3568999999875433222333333 333332222 8889998 6688999998888999999997654
No 43
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=67.37 E-value=20 Score=34.18 Aligned_cols=69 Identities=13% Similarity=0.126 Sum_probs=47.6
Q ss_pred hHcCCCcceEEecccCCCCCCHHHHHHHHHHHHHhCCcceEEcC-CCCHHHHHHHhhcCCceEeeccCCc
Q 025312 119 KRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPGTIRRAHAVHPITAVQMEWSL 187 (255)
Q Consensus 119 ~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~vr~iGvs-n~~~~~l~~~~~~~~~~~~q~~~n~ 187 (255)
..+|.||+-+++..........+.....+.+......++.+||- |-+++.+.++.+...++++|+.-+.
T Consensus 20 ~~~gaD~iGfIf~~~SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~~~ld~vQLHG~e 89 (610)
T PRK13803 20 VDMLPDFIGFIFYEKSPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKKNGIDFVQLHGAE 89 (610)
T ss_pred HHcCCCEEEEEecCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCCC
Confidence 45899999998655443334444423444433333357789996 7789999999888999999997543
No 44
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=67.32 E-value=36 Score=28.58 Aligned_cols=68 Identities=19% Similarity=0.218 Sum_probs=51.4
Q ss_pred CCCHHHHHHHHHHHHhHcCC--------------------------CcceEEecccCCCCCCH---HHHHHHHHHHHHhC
Q 025312 104 KGAPDYVRSCCEASLKRLDV--------------------------DYIDLYYQHRVDTSVPI---EETIGEMKKLVEEG 154 (255)
Q Consensus 104 ~~~~~~i~~~~~~sL~~L~~--------------------------d~iDl~~lH~~~~~~~~---~~~~~~l~~l~~~G 154 (255)
..+++. ++.++++|++.|. ...|+++|..|-...|. .+.++-|.+|+++|
T Consensus 111 ~~~~~d-~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg 189 (254)
T COG1121 111 RLNKKD-KEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEG 189 (254)
T ss_pred cccHHH-HHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCC
Confidence 344455 7788888888875 56788888888766554 46899999999998
Q ss_pred CcceEEcCCCCHHHHHHHhh
Q 025312 155 KIKYIGLSEASPGTIRRAHA 174 (255)
Q Consensus 155 ~vr~iGvsn~~~~~l~~~~~ 174 (255)
+ .|=+.+|+...+.+..+
T Consensus 190 ~--tIl~vtHDL~~v~~~~D 207 (254)
T COG1121 190 K--TVLMVTHDLGLVMAYFD 207 (254)
T ss_pred C--EEEEEeCCcHHhHhhCC
Confidence 8 57788899887766543
No 45
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=66.65 E-value=79 Score=26.73 Aligned_cols=124 Identities=13% Similarity=0.038 Sum_probs=62.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCceeccccc--------CCCchHHHHHHHHhcCCCCceEEEecccccccCccccccCCCHH
Q 025312 37 PVSEEDGISMIKHAFSKGITFFDTADVY--------GQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPD 108 (255)
Q Consensus 37 ~~~~~~~~~~l~~a~~~Gi~~~DtA~~Y--------g~g~se~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~ 108 (255)
..+.++..++.....+.|+..|+....- -....++.+..+.+..++..+...+...... ....-+.
T Consensus 17 ~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~------~~~~~p~ 90 (275)
T cd07937 17 RMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLV------GYRHYPD 90 (275)
T ss_pred eccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhccccccc------CccCCCc
Confidence 3477888888888999999999977421 1112344454443333443443332211000 0011222
Q ss_pred HH-HHHHHHHHhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHHhCCcceEEc-----CCCCHHHHHHH
Q 025312 109 YV-RSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGL-----SEASPGTIRRA 172 (255)
Q Consensus 109 ~i-~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~vr~iGv-----sn~~~~~l~~~ 172 (255)
.+ +.-++. ..+.|++.|-+ ..+..+++...+.++..++.|..-...+ +.++++.+.++
T Consensus 91 ~~~~~di~~-~~~~g~~~iri-----~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~ 154 (275)
T cd07937 91 DVVELFVEK-AAKNGIDIFRI-----FDALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKL 154 (275)
T ss_pred HHHHHHHHH-HHHcCCCEEEE-----eecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHH
Confidence 22 222333 23345544333 2222346677778888888886433344 34555555544
No 46
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=66.41 E-value=42 Score=30.66 Aligned_cols=60 Identities=20% Similarity=0.232 Sum_probs=40.2
Q ss_pred CCHHHHHHHHHHHHhHcCCCcceEEec-ccCCC-----------CCCHHH----HHHHHHHHHHhCCcceEEcCCCCH
Q 025312 105 GAPDYVRSCCEASLKRLDVDYIDLYYQ-HRVDT-----------SVPIEE----TIGEMKKLVEEGKIKYIGLSEASP 166 (255)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~l-H~~~~-----------~~~~~~----~~~~l~~l~~~G~vr~iGvsn~~~ 166 (255)
-+.+.+.+.++..+ +|+.+++.++.+ |.|.. ..+.++ ...+.+.|.+.|-. .+|+++|..
T Consensus 216 qt~e~~~~tl~~~~-~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~-~~~~~~far 291 (453)
T PRK13347 216 QTVESFRETLDKVI-ALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGYV-PIGLDHFAL 291 (453)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCCE-EEeccceeC
Confidence 47788888887766 689999998866 33321 011222 23466778888975 599999964
No 47
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=65.33 E-value=89 Score=26.83 Aligned_cols=125 Identities=11% Similarity=0.089 Sum_probs=73.9
Q ss_pred CHHHHHHHHHHHHHcCCCceecccccCCC--chHHHHHHHHhcCCCCceEEEecccccccCccccccCCCHHHHHHHHHH
Q 025312 39 SEEDGISMIKHAFSKGITFFDTADVYGQN--ANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEA 116 (255)
Q Consensus 39 ~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~g--~se~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (255)
++++..+.++.+.+.|++.|+.-- |.. ...+.+ +++++... ++-|.-+.... ++.+.. ..+-+
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~--g~~~~~d~~~v-~~lr~~~g-~~~l~vD~n~~----------~~~~~A-~~~~~ 198 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKL--GGDLEDDIERI-RAIREAAP-DARLRVDANQG----------WTPEEA-VELLR 198 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEe--CCChhhHHHHH-HHHHHhCC-CCeEEEeCCCC----------cCHHHH-HHHHH
Confidence 567777888889999999998643 221 112233 23443222 55566665322 343332 33334
Q ss_pred HHhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHHhCCcc-eEEcCCCCHHHHHHHhhcCCceEeeccCCc
Q 025312 117 SLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSL 187 (255)
Q Consensus 117 sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~vr-~iGvsn~~~~~l~~~~~~~~~~~~q~~~n~ 187 (255)
.|+.+++.+ +-.|-+.. -++.+.+|++...+. ..|=+-++.+.+.++++....+++|+..+.
T Consensus 199 ~l~~~~l~~-----iEeP~~~~----d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~ 261 (316)
T cd03319 199 ELAELGVEL-----IEQPVPAG----DDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYDGINIKLMK 261 (316)
T ss_pred HHHhcCCCE-----EECCCCCC----CHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEeccc
Confidence 555555443 44443322 356677788777666 445566788999999888888888886443
No 48
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=64.37 E-value=1e+02 Score=27.10 Aligned_cols=60 Identities=15% Similarity=0.083 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHHhHcCCCcceEEeccc-CCCC--------CCHHHHH-HHHHHHHHhCCcceEEcCCCCH
Q 025312 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHR-VDTS--------VPIEETI-GEMKKLVEEGKIKYIGLSEASP 166 (255)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH~-~~~~--------~~~~~~~-~~l~~l~~~G~vr~iGvsn~~~ 166 (255)
-+.+.+++.++..+ +++.+++.++.+.- |... .+-++.+ .+.+.|.+.|- ..+++|||..
T Consensus 162 qt~~~~~~~l~~~~-~l~~~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy-~~yeis~fa~ 231 (350)
T PRK08446 162 DNKKLLKEELKLAK-ELPINHLSAYSLTIEENTPFFEKNHKKKDDENLAKFFIEQLEELGF-KQYEISNFGK 231 (350)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEeccceecCCChhHHhhhcCCCHHHHHHHHHHHHHHCCC-cEEEeehhhC
Confidence 46778888886654 58899988887753 2110 1122333 45666777786 5799999974
No 49
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=64.15 E-value=97 Score=26.88 Aligned_cols=134 Identities=10% Similarity=0.064 Sum_probs=78.9
Q ss_pred CHHHHHHHHHHHHHcCCCceeccc----------ccCC--CchHHHHHHHHhcCC-CCceEEEecccccccCccccccCC
Q 025312 39 SEEDGISMIKHAFSKGITFFDTAD----------VYGQ--NANEVLLGKALKQLP-REKIQVATKFGIAGIGVAGVIVKG 105 (255)
Q Consensus 39 ~~~~~~~~l~~a~~~Gi~~~DtA~----------~Yg~--g~se~~lg~~l~~~~-R~~~~i~tK~~~~~~~~~~~~~~~ 105 (255)
++++..+....+.+.|+..||.=- .+|. ..+-+.+.+.++... --++-|+.|+...+. .
T Consensus 75 ~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~--------~ 146 (321)
T PRK10415 75 DPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWA--------P 146 (321)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEcccc--------C
Confidence 567777777777889999999321 1121 112444444444311 114557777742221 1
Q ss_pred CHHHHHHHHHHHHhHcCCCcceEEecccCCCCCCH--HHHHHHHHHHHHhCCcceEEcCCC-CHHHHHHHhhcCCceEee
Q 025312 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPI--EETIGEMKKLVEEGKIKYIGLSEA-SPGTIRRAHAVHPITAVQ 182 (255)
Q Consensus 106 ~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~--~~~~~~l~~l~~~G~vr~iGvsn~-~~~~l~~~~~~~~~~~~q 182 (255)
+..... .+-+.+++.|. |.+.+|.-...... ..-|+.+.++++.=.|--||.... ++++++++++....+.+|
T Consensus 147 ~~~~~~-~~a~~le~~G~---d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVm 222 (321)
T PRK10415 147 EHRNCV-EIAQLAEDCGI---QALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALM 222 (321)
T ss_pred CcchHH-HHHHHHHHhCC---CEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEE
Confidence 111121 23334667775 66677865322111 124788888888777888888877 788899998877778888
Q ss_pred cc
Q 025312 183 ME 184 (255)
Q Consensus 183 ~~ 184 (255)
+-
T Consensus 223 iG 224 (321)
T PRK10415 223 IG 224 (321)
T ss_pred EC
Confidence 74
No 50
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=63.61 E-value=99 Score=26.81 Aligned_cols=128 Identities=14% Similarity=0.134 Sum_probs=72.4
Q ss_pred CCHHHHHHHHHHHHHcCCCceecccccCCCc------hHHHHHHHHhcCC-CCceEEEecccccccCccccccCCCHHHH
Q 025312 38 VSEEDGISMIKHAFSKGITFFDTADVYGQNA------NEVLLGKALKQLP-REKIQVATKFGIAGIGVAGVIVKGAPDYV 110 (255)
Q Consensus 38 ~~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~g~------se~~lg~~l~~~~-R~~~~i~tK~~~~~~~~~~~~~~~~~~~i 110 (255)
.+.++...+++.+.+.|+..|--+ | |+ -.+++.. +++.. ..++.|+|-. . .+
T Consensus 45 ls~eei~~li~~~~~~Gv~~I~~t---G-GEPllr~dl~~li~~-i~~~~~l~~i~itTNG-~---------------ll 103 (329)
T PRK13361 45 LSLEELAWLAQAFTELGVRKIRLT---G-GEPLVRRGCDQLVAR-LGKLPGLEELSLTTNG-S---------------RL 103 (329)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE---C-cCCCccccHHHHHHH-HHhCCCCceEEEEeCh-h---------------HH
Confidence 578889999999999999877633 3 21 1222222 22211 2245566542 1 12
Q ss_pred HHHHHHHHhHcCCCcceEEecccCCCC--------CCHHHHHHHHHHHHHhCC--c--ceEEcCCCCHHHHHHHhhc---
Q 025312 111 RSCCEASLKRLDVDYIDLYYQHRVDTS--------VPIEETIGEMKKLVEEGK--I--KYIGLSEASPGTIRRAHAV--- 175 (255)
Q Consensus 111 ~~~~~~sL~~L~~d~iDl~~lH~~~~~--------~~~~~~~~~l~~l~~~G~--v--r~iGvsn~~~~~l~~~~~~--- 175 (255)
.+ .-+.|...|++++- +-|+.+++. ..++.+++.++.+++.|. | ..+.+...+.+++.++++.
T Consensus 104 ~~-~~~~L~~aGl~~v~-ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~ 181 (329)
T PRK13361 104 AR-FAAELADAGLKRLN-ISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRE 181 (329)
T ss_pred HH-HHHHHHHcCCCeEE-EEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHh
Confidence 22 33456667777665 355555432 236789999999999985 2 2334444566666665443
Q ss_pred CCceEeeccCCcC
Q 025312 176 HPITAVQMEWSLW 188 (255)
Q Consensus 176 ~~~~~~q~~~n~~ 188 (255)
.++++.-+++-++
T Consensus 182 ~gi~~~~ie~mP~ 194 (329)
T PRK13361 182 RGLDIAFIEEMPL 194 (329)
T ss_pred cCCeEEEEecccC
Confidence 3444444444443
No 51
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=63.48 E-value=91 Score=26.32 Aligned_cols=131 Identities=15% Similarity=0.132 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHHHcCCCceec---ccccCC----CchHHHHHHHHhcCCCC-ceEEEecccccccCccccccCCCHHHH
Q 025312 39 SEEDGISMIKHAFSKGITFFDT---ADVYGQ----NANEVLLGKALKQLPRE-KIQVATKFGIAGIGVAGVIVKGAPDYV 110 (255)
Q Consensus 39 ~~~~~~~~l~~a~~~Gi~~~Dt---A~~Yg~----g~se~~lg~~l~~~~R~-~~~i~tK~~~~~~~~~~~~~~~~~~~i 110 (255)
+.++..+..+.+.+.|+..|+. ++.... +...+.+.+.+++.++. ++-|+.|+... .+.+.+
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~----------~~~~~~ 178 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPY----------FDLEDI 178 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCC----------CCHHHH
Confidence 5678888889999999999984 222221 12345566666552211 56788888643 344455
Q ss_pred HHHHHHHHhHcCCCcceEEecccCC-------------CCC---C-----H-HHHHHHHHHHHHhC--CcceEEcCCC-C
Q 025312 111 RSCCEASLKRLDVDYIDLYYQHRVD-------------TSV---P-----I-EETIGEMKKLVEEG--KIKYIGLSEA-S 165 (255)
Q Consensus 111 ~~~~~~sL~~L~~d~iDl~~lH~~~-------------~~~---~-----~-~~~~~~l~~l~~~G--~vr~iGvsn~-~ 165 (255)
.+.++ .++..|.|.|. +|+-. ... . . .-.++.+.++++.= .+--||+... +
T Consensus 179 ~~~a~-~l~~~Gad~i~---~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~ 254 (289)
T cd02810 179 VELAK-AAERAGADGLT---AINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDS 254 (289)
T ss_pred HHHHH-HHHHcCCCEEE---EEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCC
Confidence 44444 46677865554 44210 000 0 0 12477778887764 6888888887 4
Q ss_pred HHHHHHHhhcCCceEeecc
Q 025312 166 PGTIRRAHAVHPITAVQME 184 (255)
Q Consensus 166 ~~~l~~~~~~~~~~~~q~~ 184 (255)
++.+.+++... .+.+|+-
T Consensus 255 ~~da~~~l~~G-Ad~V~vg 272 (289)
T cd02810 255 GEDVLEMLMAG-ASAVQVA 272 (289)
T ss_pred HHHHHHHHHcC-ccHheEc
Confidence 78888887743 6666653
No 52
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=63.33 E-value=72 Score=28.23 Aligned_cols=59 Identities=17% Similarity=0.184 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHHhHcCCCcceEEecccCCCCC--------------C---HHHHHHHH-HHHHHhCCcceEEcCCCCH
Q 025312 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSV--------------P---IEETIGEM-KKLVEEGKIKYIGLSEASP 166 (255)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~--------------~---~~~~~~~l-~~l~~~G~vr~iGvsn~~~ 166 (255)
-+.+.+++.++..+ +++.+++.+|.+.-. +.+ + ..+.+..+ +.|.+.|. ..+++|||..
T Consensus 172 qt~~~~~~tl~~~~-~l~~~~i~~y~l~~~-~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~G~-~~ye~s~fa~ 248 (375)
T PRK05628 172 ESDDDWRASLDAAL-EAGVDHVSAYALIVE-DGTALARRVRRGELPAPDDDVLADRYELADARLSAAGF-DWYEVSNWAR 248 (375)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEeeeeecC-CCChHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHcCC-CeeeeccccC
Confidence 57778888777554 588999988877632 111 1 11233333 45566666 4689999964
No 53
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=60.76 E-value=1e+02 Score=25.94 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHHHHcCCCceeccc
Q 025312 38 VSEEDGISMIKHAFSKGITFFDTAD 62 (255)
Q Consensus 38 ~~~~~~~~~l~~a~~~Gi~~~DtA~ 62 (255)
++.++..++++...++|+..|+...
T Consensus 19 ~s~~~k~~i~~~L~~~Gv~~IEvG~ 43 (262)
T cd07948 19 FDTEDKIEIAKALDAFGVDYIELTS 43 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEC
Confidence 3778899999999999999999864
No 54
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=60.57 E-value=57 Score=26.00 Aligned_cols=45 Identities=16% Similarity=0.144 Sum_probs=27.9
Q ss_pred HhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHHhCCcceEEcCCCCHHHH
Q 025312 118 LKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTI 169 (255)
Q Consensus 118 L~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn~~~~~l 169 (255)
...++ +|.++||..++ . +..+.+.+......++.+|++++...++
T Consensus 69 a~~~~---~d~Vqlhg~e~---~-~~~~~l~~~~~~~~i~~i~~~~~~~~~~ 113 (203)
T cd00405 69 AEELG---LDVVQLHGDES---P-EYCAQLRARLGLPVIKAIRVKDEEDLEK 113 (203)
T ss_pred HHhcC---CCEEEECCCCC---H-HHHHHHHhhcCCcEEEEEecCChhhHHH
Confidence 34455 68899998642 1 2334444333346788899998865544
No 55
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=60.07 E-value=80 Score=26.24 Aligned_cols=69 Identities=16% Similarity=0.143 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHHHhHcCCCcceEEecccCCCC-CCHHHHHHHHHHHHHhCCcceEEcCCCCHHHHHHHhh
Q 025312 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS-VPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHA 174 (255)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~-~~~~~~~~~l~~l~~~G~vr~iGvsn~~~~~l~~~~~ 174 (255)
.+.+.-.+..+-..+-++++.|=+=.+..+... .+..|++++-+.|+++|-+- +=-++-++-..+++.+
T Consensus 73 ~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~V-lPY~~~D~v~akrL~d 142 (247)
T PF05690_consen 73 RTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVV-LPYCTDDPVLAKRLED 142 (247)
T ss_dssp SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EE-EEEE-S-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEE-eecCCCCHHHHHHHHH
Confidence 567777777777888889988877666555433 45679999999999999864 4445556555555444
No 56
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=59.61 E-value=74 Score=27.59 Aligned_cols=106 Identities=15% Similarity=0.211 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHcCCCceecccccCCCchHHHHHHHHhcCCCCceEEEecccccccCccccccCCCHHHHHHHHHHHHhHc
Q 025312 42 DGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRL 121 (255)
Q Consensus 42 ~~~~~l~~a~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L 121 (255)
.-+++|+.+-++|| .+|.|+. +++.+-+++.- -+.-+|+|...... ..++.+.--.++++...++=
T Consensus 150 ~Gk~lV~~~N~LgI-iiDlSH~-----s~kt~~Dvl~~--s~~PviaSHSN~~a------l~~h~RNl~D~qlkaI~~~g 215 (313)
T COG2355 150 FGKELVREMNELGI-IIDLSHL-----SDKTFWDVLDL--SKAPVVASHSNARA------LVDHPRNLSDEQLKAIAETG 215 (313)
T ss_pred HHHHHHHHHHhcCC-EEEeccc-----CCccHHHHHhc--cCCceEEecCCchh------ccCCCCCCCHHHHHHHHhcC
Confidence 35899999999997 6898875 67777777763 44566777654432 12233333445555555565
Q ss_pred CCCcceEEecccC-----CCCCCHHHHHHHHHHHHHhCCcceEEcCC
Q 025312 122 DVDYIDLYYQHRV-----DTSVPIEETIGEMKKLVEEGKIKYIGLSE 163 (255)
Q Consensus 122 ~~d~iDl~~lH~~-----~~~~~~~~~~~~l~~l~~~G~vr~iGvsn 163 (255)
|+ |.+.++-.. .+...+++..+.++.+++.+=+.++|+.+
T Consensus 216 Gv--Igv~~~~~fl~~~~~~~atldd~v~hI~h~v~~~G~dhVglGs 260 (313)
T COG2355 216 GV--IGVNFIPAFLRPGGAARATLDDLVRHIDHFVELVGIDHVGLGS 260 (313)
T ss_pred CE--EEEEeehhhccCCCCCCCCHHHHHHHHHHHHHhcCcceeEecc
Confidence 54 444433221 23457899999999999999999999964
No 57
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=59.19 E-value=27 Score=32.19 Aligned_cols=129 Identities=20% Similarity=0.244 Sum_probs=74.9
Q ss_pred HHHHHHHHHcCCCcee--ccccc---CC-----CchHHHHHHHHhc---CCCCceEEEecccccccCcc---------cc
Q 025312 44 ISMIKHAFSKGITFFD--TADVY---GQ-----NANEVLLGKALKQ---LPREKIQVATKFGIAGIGVA---------GV 101 (255)
Q Consensus 44 ~~~l~~a~~~Gi~~~D--tA~~Y---g~-----g~se~~lg~~l~~---~~R~~~~i~tK~~~~~~~~~---------~~ 101 (255)
-+-.....+.|+.-+- ||.+| |+ |.-|.++.-+-+. ..+..+||++-+|.-...++ .-
T Consensus 105 ~e~f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~~g~~L~Gk~~lTaGLGGMgGAQplA~~m~g~v~l 184 (546)
T PF01175_consen 105 WEHFERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETFLNAARKHFGGDLAGKLFLTAGLGGMGGAQPLAATMAGGVGL 184 (546)
T ss_dssp HHHHHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHHHHHHHHHSTTS-TT-EEEEE--STTCCHHHHHHHHTT-EEE
T ss_pred HHHHHHHHhccchhhccccccceEEEcccceeehhhHHHHHHHHHhcCCCCcceEEEEecccccccchHHHHHhcCceEE
Confidence 3455677788888664 55544 22 4456665544332 36778999998864332110 01
Q ss_pred ccCCCHHHHHHHHHHHHhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHHhCCcceEEcCCCCHHHHHHHhhc---CCc
Q 025312 102 IVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV---HPI 178 (255)
Q Consensus 102 ~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn~~~~~l~~~~~~---~~~ 178 (255)
....++..|++ |+.+.|+|.+- .+++++++..++.+++|+..+||+-..-.+.++++.+. ..+
T Consensus 185 ~vEvd~~ri~k-------R~~~g~ld~~~-------~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~~i~pDl 250 (546)
T PF01175_consen 185 IVEVDPSRIEK-------RLEQGYLDEVT-------DDLDEALARAKEARAKKEPLSIGLLGNAADLWEELVERGIIPDL 250 (546)
T ss_dssp EEES-HHHHHH-------HHHTTSSSEEE-------SSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHTT---SE
T ss_pred EEEECHHHHHH-------HHhCCCeeEEc-------CCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHcCCCCCc
Confidence 23455555554 67788888642 45889999999999999999999998888888888776 234
Q ss_pred eEeeccCC
Q 025312 179 TAVQMEWS 186 (255)
Q Consensus 179 ~~~q~~~n 186 (255)
..-|...|
T Consensus 251 ~tDQTS~H 258 (546)
T PF01175_consen 251 VTDQTSAH 258 (546)
T ss_dssp E---SSTT
T ss_pred ccCCCccc
Confidence 44577654
No 58
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=59.08 E-value=1.3e+02 Score=26.63 Aligned_cols=25 Identities=8% Similarity=0.210 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHHHcCCCceeccc
Q 025312 38 VSEEDGISMIKHAFSKGITFFDTAD 62 (255)
Q Consensus 38 ~~~~~~~~~l~~a~~~Gi~~~DtA~ 62 (255)
++.++..++.+..-++|+..|+...
T Consensus 19 ~s~~~k~~ia~~L~~~Gv~~IEvG~ 43 (363)
T TIGR02090 19 LTVEQKVEIARKLDELGVDVIEAGF 43 (363)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 4778889999999999999999754
No 59
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=59.00 E-value=66 Score=26.14 Aligned_cols=72 Identities=15% Similarity=0.210 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHHcCCCceecccccCC-CchH---HHHHHHHhcCCCCceEEEecccccccCccccccCCCHHHHHHHH
Q 025312 39 SEEDGISMIKHAFSKGITFFDTADVYGQ-NANE---VLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCC 114 (255)
Q Consensus 39 ~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~-g~se---~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~ 114 (255)
++++...+.+.+.++|..|+=|+.-|+. |.+. +.+.+.++ ++ +-.|.... -.+.+...+-+
T Consensus 130 ~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~----~~--v~IKaaGG---------irt~~~a~~~i 194 (211)
T TIGR00126 130 TDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVG----DT--IGVKASGG---------VRTAEDAIAMI 194 (211)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhc----cC--CeEEEeCC---------CCCHHHHHHHH
Confidence 5677889999999999999999988863 3332 33444443 21 23333111 13778888888
Q ss_pred HHHHhHcCCCc
Q 025312 115 EASLKRLDVDY 125 (255)
Q Consensus 115 ~~sL~~L~~d~ 125 (255)
+.--.|+|+++
T Consensus 195 ~aGa~riGts~ 205 (211)
T TIGR00126 195 EAGASRIGASA 205 (211)
T ss_pred HHhhHHhCcch
Confidence 88889999875
No 60
>COG5310 Homospermidine synthase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=58.69 E-value=57 Score=28.60 Aligned_cols=135 Identities=16% Similarity=0.119 Sum_probs=75.6
Q ss_pred CcccccccceeeeCCCCcccccceecccccCC--------CCCCC----CCHHHHHHHHHHHHHcCCCceecccccCCCc
Q 025312 1 MAEEKHQVPRVKLGTQGLEVSKLGYGCMNLSG--------GYSSP----VSEEDGISMIKHAFSKGITFFDTADVYGQNA 68 (255)
Q Consensus 1 ~~~~~~~m~~~~lg~~g~~vs~lg~Gt~~~~~--------~~~~~----~~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~g~ 68 (255)
||.++.+|.... .-.|-.||||..+-|. .++.. +++++ +..+..-+.||||+-.+-.-.+
T Consensus 1 M~~~~~~vygei----tgpIimIGfGSigrgTLPLierhf~~d~~~~~viDp~e--k~~k~~~~~girfV~e~it~~N-- 72 (481)
T COG5310 1 MADENWPVYGEI----TGPIIMIGFGSIGRGTLPLIERHFKFDRSRMVVIDPRE--KDRKILDERGIRFVQEAITRDN-- 72 (481)
T ss_pred CCCcccceeeec----cCcEEEEeecccccccchhHHHhcCCChhheEEechhH--HHHHHHHhhhhHHHHHhcChhh--
Confidence 677777765532 2246678888765442 12111 23333 5556667889999975542221
Q ss_pred hHHHHHHHHhcCCCCceEEEecccccccCccccccCCCHHHHHHHHHHHHhHcCCCcceEEecccCCCCCCH-----HHH
Q 025312 69 NEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPI-----EET 143 (255)
Q Consensus 69 se~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~-----~~~ 143 (255)
-.++++..|+.+.-+-+.|---+. .+.- .+-+.++++++=|||-+.=-|+....+. .++
T Consensus 73 yk~vL~pll~~~~gqgf~vnLSvd------------~~s~----Dlmr~crk~~vLYidTvVEpW~gfyfDa~adn~art 136 (481)
T COG5310 73 YKDVLKPLLKGVGGQGFCVNLSVD------------TSSL----DLMRLCRKHGVLYIDTVVEPWLGFYFDAQADNAART 136 (481)
T ss_pred HHHHHHHHhhcCCCceEEEEeEec------------cchh----HHHHHHHHcCeEEEeeeeccccccchhhhhhhhhhh
Confidence 256777777754445555554432 2222 3345677899999998877777544332 233
Q ss_pred HHHHHHHHHhCCcceE
Q 025312 144 IGEMKKLVEEGKIKYI 159 (255)
Q Consensus 144 ~~~l~~l~~~G~vr~i 159 (255)
=-+|.+.+.+-+-|..
T Consensus 137 nyaLRet~lrEk~r~p 152 (481)
T COG5310 137 NYALRETVLREKRRNP 152 (481)
T ss_pred hHHHHHHHHHHhccCC
Confidence 3355555554444443
No 61
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=58.50 E-value=1.2e+02 Score=26.14 Aligned_cols=137 Identities=15% Similarity=0.066 Sum_probs=81.0
Q ss_pred CHHHHHHHHHHHHHcCCCceeccc---------ccCC---CchHHHHHHHHhcC-CCCceEEEecccccccCccccccCC
Q 025312 39 SEEDGISMIKHAFSKGITFFDTAD---------VYGQ---NANEVLLGKALKQL-PREKIQVATKFGIAGIGVAGVIVKG 105 (255)
Q Consensus 39 ~~~~~~~~l~~a~~~Gi~~~DtA~---------~Yg~---g~se~~lg~~l~~~-~R~~~~i~tK~~~~~~~~~~~~~~~ 105 (255)
++++..+....+.+.|+..||.-- .|+. ....+.+.+.++.. .+-.+-|+.|+...+..
T Consensus 73 ~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~-------- 144 (319)
T TIGR00737 73 DPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDD-------- 144 (319)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCC--------
Confidence 677888888888899999998521 1221 11235555655542 11236678887422110
Q ss_pred CHHHHHHHHHHHHhHcCCCcceEEecccCCCCCCH--HHHHHHHHHHHHhCCcceEEcCCC-CHHHHHHHhhcCCceEee
Q 025312 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPI--EETIGEMKKLVEEGKIKYIGLSEA-SPGTIRRAHAVHPITAVQ 182 (255)
Q Consensus 106 ~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~--~~~~~~l~~l~~~G~vr~iGvsn~-~~~~l~~~~~~~~~~~~q 182 (255)
+...+ ..+-+.|+..|+ |.+.+|........ ...|+.+.++++.=.+--|+.... +++++.++++....+.++
T Consensus 145 ~~~~~-~~~a~~l~~~G~---d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~Vm 220 (319)
T TIGR00737 145 AHINA-VEAARIAEDAGA---QAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVM 220 (319)
T ss_pred CcchH-HHHHHHHHHhCC---CEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEE
Confidence 11111 234455677785 45556754322111 134788888888766777787766 678888888767778777
Q ss_pred ccCCc
Q 025312 183 MEWSL 187 (255)
Q Consensus 183 ~~~n~ 187 (255)
+---+
T Consensus 221 igR~~ 225 (319)
T TIGR00737 221 IGRGA 225 (319)
T ss_pred EChhh
Confidence 74333
No 62
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=58.46 E-value=54 Score=26.86 Aligned_cols=75 Identities=15% Similarity=0.147 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHHHHHcCCCceecccccCC-CchHHHHHHHHhcCCCCceEEEecccccccCccccccCCCHHHHHHHHHH
Q 025312 38 VSEEDGISMIKHAFSKGITFFDTADVYGQ-NANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEA 116 (255)
Q Consensus 38 ~~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~-g~se~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (255)
.++++..++.+.+.+.|..|+=|+.-|+. |.+.+.+....+.. +.++ .-|.... =.+.+...+-++.
T Consensus 133 L~~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~~-~~~~--~IKasGG---------Irt~~~a~~~i~a 200 (221)
T PRK00507 133 LTDEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRETV-GPRV--GVKASGG---------IRTLEDALAMIEA 200 (221)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHh-CCCc--eEEeeCC---------cCCHHHHHHHHHc
Confidence 36788899999999999999999998854 55666555443321 2222 2222100 1356666666666
Q ss_pred HHhHcCCC
Q 025312 117 SLKRLDVD 124 (255)
Q Consensus 117 sL~~L~~d 124 (255)
--.|+|++
T Consensus 201 GA~riGtS 208 (221)
T PRK00507 201 GATRLGTS 208 (221)
T ss_pred CcceEccC
Confidence 66666665
No 63
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=58.17 E-value=1e+02 Score=27.22 Aligned_cols=60 Identities=18% Similarity=0.106 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHHhHcCCCcceEEeccc-CCCC------------CCHH---HHH-HHHHHHHHhCCcceEEcCCCCH
Q 025312 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHR-VDTS------------VPIE---ETI-GEMKKLVEEGKIKYIGLSEASP 166 (255)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH~-~~~~------------~~~~---~~~-~~l~~l~~~G~vr~iGvsn~~~ 166 (255)
-+.+.+.+.++..+ +++.+++.+|.+.- |... .+.+ +.+ .+.+.|.+.|- +++++|||..
T Consensus 163 qt~e~~~~~l~~~~-~l~~~~is~y~l~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy-~~ye~~~fa~ 239 (374)
T PRK05799 163 QTLEDWKETLEKVV-ELNPEHISCYSLIIEEGTPFYNLYENGKLKLPDEEEEREMYHYTIEFLKEKGY-HQYEISNFAK 239 (374)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEEeccEecCCCHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCC-cEEeeeeeEC
Confidence 46777777777665 47888888876642 2110 0111 223 34466777786 5689999964
No 64
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=58.01 E-value=1.3e+02 Score=26.39 Aligned_cols=98 Identities=14% Similarity=0.047 Sum_probs=53.4
Q ss_pred CCCceEEEecccccccCccccccCCCHHHHHHHHHHHHhHcCCCcceEE-eccc-CCCCC---CHHH-HHHHHHHHHHhC
Q 025312 81 PREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLY-YQHR-VDTSV---PIEE-TIGEMKKLVEEG 154 (255)
Q Consensus 81 ~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~-~lH~-~~~~~---~~~~-~~~~l~~l~~~G 154 (255)
-..++.|..|++...... ...+.+... .+-+-|+.+|+||+++- -.|. +.+.. .... .....+++++.=
T Consensus 201 vG~d~~v~iRi~~~D~~~----~g~~~~e~~-~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v 275 (353)
T cd02930 201 VGEDFIIIYRLSMLDLVE----GGSTWEEVV-ALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAV 275 (353)
T ss_pred cCCCceEEEEecccccCC----CCCCHHHHH-HHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhC
Confidence 345778888886432110 113444433 34455788898888872 2232 11110 0011 233445666665
Q ss_pred CcceEEcCCC-CHHHHHHHhhcCCceEeec
Q 025312 155 KIKYIGLSEA-SPGTIRRAHAVHPITAVQM 183 (255)
Q Consensus 155 ~vr~iGvsn~-~~~~l~~~~~~~~~~~~q~ 183 (255)
.+--++.... +++.++++++....|.+++
T Consensus 276 ~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~ 305 (353)
T cd02930 276 DIPVIASNRINTPEVAERLLADGDADMVSM 305 (353)
T ss_pred CCCEEEcCCCCCHHHHHHHHHCCCCChhHh
Confidence 6666766554 7788888887766665544
No 65
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=56.68 E-value=83 Score=25.39 Aligned_cols=133 Identities=13% Similarity=0.044 Sum_probs=75.9
Q ss_pred CHHHHHHHHHHHHHcCCCceecc----------cccCCC--chHHHHHHHHhcCC-CCceEEEecccccccCccccccCC
Q 025312 39 SEEDGISMIKHAFSKGITFFDTA----------DVYGQN--ANEVLLGKALKQLP-REKIQVATKFGIAGIGVAGVIVKG 105 (255)
Q Consensus 39 ~~~~~~~~l~~a~~~Gi~~~DtA----------~~Yg~g--~se~~lg~~l~~~~-R~~~~i~tK~~~~~~~~~~~~~~~ 105 (255)
++++..+....+.++|+..||-- +.||.. ..-+.+-+.+++.. .-.+-|+.|+...+. .
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~--------~ 136 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWD--------D 136 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccC--------C
Confidence 57778888888899999998852 234431 13344445554421 111456667632210 1
Q ss_pred CHHHHHHHHHHHHhHcCCCcceEEecccCCCCC--CHHHHHHHHHHHHHhCCcceEEcCCC-CHHHHHHHhhcCCceEee
Q 025312 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDTSV--PIEETIGEMKKLVEEGKIKYIGLSEA-SPGTIRRAHAVHPITAVQ 182 (255)
Q Consensus 106 ~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~--~~~~~~~~l~~l~~~G~vr~iGvsn~-~~~~l~~~~~~~~~~~~q 182 (255)
. +...+ +-+.|+..|+ |.+.+|...... .....|+.+.++++.-.+--++.... +.+++.++++....+.++
T Consensus 137 ~-~~~~~-~~~~l~~~Gv---d~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~ 211 (231)
T cd02801 137 E-EETLE-LAKALEDAGA---SALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVM 211 (231)
T ss_pred c-hHHHH-HHHHHHHhCC---CEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEE
Confidence 1 12222 2234556675 555667643211 00124677778888777777777766 788888888776667776
Q ss_pred cc
Q 025312 183 ME 184 (255)
Q Consensus 183 ~~ 184 (255)
+-
T Consensus 212 ig 213 (231)
T cd02801 212 IG 213 (231)
T ss_pred Ec
Confidence 64
No 66
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=56.62 E-value=81 Score=27.90 Aligned_cols=60 Identities=13% Similarity=0.036 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHHhHcCCCcceEEecc-cCCCC------------CCHH---HH-HHHHHHHHHhCCcceEEcCCCCH
Q 025312 105 GAPDYVRSCCEASLKRLDVDYIDLYYQH-RVDTS------------VPIE---ET-IGEMKKLVEEGKIKYIGLSEASP 166 (255)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH-~~~~~------------~~~~---~~-~~~l~~l~~~G~vr~iGvsn~~~ 166 (255)
-+.+.+.+.++.. .+|+.+++.++.+. .|... .+.+ +. -.+.+.|.+.|-. .+++|||..
T Consensus 164 qt~~~~~~~l~~~-~~l~~~~i~~y~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~-~~~~~~fa~ 240 (377)
T PRK08599 164 QTIEDFKESLAKA-LALDIPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHGFH-QYEISNFAK 240 (377)
T ss_pred CCHHHHHHHHHHH-HccCCCEEeeeceeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCCc-EeeeeeeeC
Confidence 5778888887764 56899988887553 22100 0111 22 3466777888864 699999963
No 67
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=56.04 E-value=1.4e+02 Score=26.22 Aligned_cols=110 Identities=13% Similarity=0.122 Sum_probs=68.4
Q ss_pred CCCceEEEeccccccc------CccccccCCCHHHHHHHHHHHHhHcCCCcceEEeccc-CCCCCCHHHHHHHHHHHHHh
Q 025312 81 PREKIQVATKFGIAGI------GVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHR-VDTSVPIEETIGEMKKLVEE 153 (255)
Q Consensus 81 ~R~~~~i~tK~~~~~~------~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~-~~~~~~~~~~~~~l~~l~~~ 153 (255)
.|..++|+|-+|=... +..+...+.+++.|..++....+.++. .++-+.+-. =+|...++.+.++++.+.+.
T Consensus 99 ~r~t~cvSsqvGC~~~C~FC~tg~~g~~rnlt~~EIv~qv~~~~~~~~~-~~~~IvfmGmGEPlln~~~v~~~i~~l~~~ 177 (345)
T PRK14457 99 KRLTVCVSSQVGCPMACDFCATGKGGLKRSLKAHEIVDQVLTVQEDMQR-RVSHVVFMGMGEPLLNIDEVLAAIRCLNQD 177 (345)
T ss_pred CCCEEEEeCCCCCCCcCCcCCCCCCCCccccCHHHHHHHHHHHHHHhcC-CCCEEEEEecCccccCHHHHHHHHHHHhcc
Confidence 3666777776642111 112334568999999999988877753 355444444 34555678899999999875
Q ss_pred -CC-cceEEcCCC-CHHHHHHHhhcC------CceEeeccCCcCCcC
Q 025312 154 -GK-IKYIGLSEA-SPGTIRRAHAVH------PITAVQMEWSLWTRD 191 (255)
Q Consensus 154 -G~-vr~iGvsn~-~~~~l~~~~~~~------~~~~~q~~~n~~~~~ 191 (255)
|. .|+|-||+. -+..++++.+.. ....+.+..|..+..
T Consensus 178 ~~i~~r~itvST~G~~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e 224 (345)
T PRK14457 178 LGIGQRRITVSTVGVPKTIPQLAELAFQRLGRLQFTLAVSLHAPNQK 224 (345)
T ss_pred cCCccCceEEECCCchhhHHHHHhhhhhhcccCceEEEEEeCCCCHH
Confidence 43 367777776 345667766543 223456666666554
No 68
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=55.32 E-value=1.1e+02 Score=24.80 Aligned_cols=131 Identities=17% Similarity=0.166 Sum_probs=79.8
Q ss_pred CCHHHHHHHHHHHHHcCCCceecccccCCCchHHHHHHHHhcCCCCceEEEecccccccCccccccCCCHHHHHHHHHHH
Q 025312 38 VSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEAS 117 (255)
Q Consensus 38 ~~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 117 (255)
.+.++..++++.|.+.|+.-+=..+.| =+...+.|+ ...+-|+|=++++.+. .+.+.-...+++.
T Consensus 15 ~t~~~i~~lc~~A~~~~~~avcv~p~~-----v~~a~~~l~---~~~v~v~tVigFP~G~-------~~~~~K~~E~~~A 79 (211)
T TIGR00126 15 TTEEDIITLCAQAKTYKFAAVCVNPSY-----VPLAKELLK---GTEVRICTVVGFPLGA-------STTDVKLYETKEA 79 (211)
T ss_pred CCHHHHHHHHHHHHhhCCcEEEeCHHH-----HHHHHHHcC---CCCCeEEEEeCCCCCC-------CcHHHHHHHHHHH
Confidence 478999999999999988776655554 233344443 2467788878766533 3444444445555
Q ss_pred HhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHHh--CCcceE--EcCCCCHHHHHHHhhc---CCceEeecc
Q 025312 118 LKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEE--GKIKYI--GLSEASPGTIRRAHAV---HPITAVQME 184 (255)
Q Consensus 118 L~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~--G~vr~i--Gvsn~~~~~l~~~~~~---~~~~~~q~~ 184 (255)
+ ++|.|-||+++--..-...+++.+.+.+.+.++. |..-.+ -.+-.+.+++..+.+. ...+++.+.
T Consensus 80 v-~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKTs 152 (211)
T TIGR00126 80 I-KYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEICIDAGADFVKTS 152 (211)
T ss_pred H-HcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEeC
Confidence 4 4799999998765543345567777777777764 442222 1111243454444332 456777776
No 69
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=55.21 E-value=18 Score=23.07 Aligned_cols=22 Identities=27% Similarity=0.441 Sum_probs=19.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHH
Q 025312 216 RIGNLAKKYNCTSAQLALAWVL 237 (255)
Q Consensus 216 ~l~~ia~~~~~s~~q~al~~~l 237 (255)
.+.+||+++|+++.++|..|+.
T Consensus 15 ~FveIAr~~~i~a~e~a~~w~~ 36 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAWAE 36 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHHHH
Confidence 3678999999999999999975
No 70
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=53.41 E-value=89 Score=31.34 Aligned_cols=71 Identities=14% Similarity=0.041 Sum_probs=56.3
Q ss_pred cCCCHHHHHHHHHHHHhHcCC--------------------------CcceEEecccCCCCCCH---HHHHHHHHHHHHh
Q 025312 103 VKGAPDYVRSCCEASLKRLDV--------------------------DYIDLYYQHRVDTSVPI---EETIGEMKKLVEE 153 (255)
Q Consensus 103 ~~~~~~~i~~~~~~sL~~L~~--------------------------d~iDl~~lH~~~~~~~~---~~~~~~l~~l~~~ 153 (255)
++..+..+.+.++.+|+.++. ....++++..|....|. ..+|..+.++++.
T Consensus 668 rG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~ 747 (885)
T KOG0059|consen 668 RGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKN 747 (885)
T ss_pred cCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 445667888889999987774 44677888887655543 4789999999999
Q ss_pred CCcceEEcCCCCHHHHHHHhhc
Q 025312 154 GKIKYIGLSEASPGTIRRAHAV 175 (255)
Q Consensus 154 G~vr~iGvsn~~~~~l~~~~~~ 175 (255)
|+ ++=+.+|+.++.+.+...
T Consensus 748 g~--aiiLTSHsMeE~EaLCtR 767 (885)
T KOG0059|consen 748 GK--AIILTSHSMEEAEALCTR 767 (885)
T ss_pred CC--EEEEEcCCHHHHHHHhhh
Confidence 99 899999999988887654
No 71
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=53.34 E-value=1.1e+02 Score=27.82 Aligned_cols=60 Identities=17% Similarity=0.247 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHHhHcCCCcceEEec-ccCC----------C-CCCHH---HHH-HHHHHHHHhCCcceEEcCCCCH
Q 025312 105 GAPDYVRSCCEASLKRLDVDYIDLYYQ-HRVD----------T-SVPIE---ETI-GEMKKLVEEGKIKYIGLSEASP 166 (255)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~l-H~~~----------~-~~~~~---~~~-~~l~~l~~~G~vr~iGvsn~~~ 166 (255)
-+.+.+.+.++..++ |+.+++.++.+ +.|. . ..+.+ +.+ .+.+.|.+.|. ..++++||..
T Consensus 215 qt~e~~~~tl~~~~~-l~~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy-~~~~~~~fa~ 290 (455)
T TIGR00538 215 QTKESFAKTLEKVAE-LNPDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGY-QFIGMDHFAK 290 (455)
T ss_pred CCHHHHHHHHHHHHh-cCCCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCC-EEEeccceeC
Confidence 578888888886655 89999999877 2221 0 01122 223 34556666776 5799999964
No 72
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=52.90 E-value=1.5e+02 Score=25.63 Aligned_cols=120 Identities=16% Similarity=0.120 Sum_probs=66.1
Q ss_pred CHHHHHHHHHHHHHc-CCCceecccccCC--CchHHHHHHHHhc---C-CCCceEEEecccccccCccccccCCCHHHHH
Q 025312 39 SEEDGISMIKHAFSK-GITFFDTADVYGQ--NANEVLLGKALKQ---L-PREKIQVATKFGIAGIGVAGVIVKGAPDYVR 111 (255)
Q Consensus 39 ~~~~~~~~l~~a~~~-Gi~~~DtA~~Yg~--g~se~~lg~~l~~---~-~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~ 111 (255)
+.++..++++...+. |++-+--+. |+ -.+.+.+.+.++. . ..+.+-+.|+.... .+..+.
T Consensus 120 ~~~e~~~~i~~i~~~~~I~~VilSG--GDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~-----------~p~rit 186 (321)
T TIGR03822 120 SPAELDAAFAYIADHPEIWEVILTG--GDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVA-----------DPARVT 186 (321)
T ss_pred CHHHHHHHHHHHHhCCCccEEEEeC--CCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCccc-----------ChhhcC
Confidence 556777787766644 787552111 11 0122233333333 1 23345677775321 222344
Q ss_pred HHHHHHHhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHHhCCcceE------EcCCCCHHHHHHHhh
Q 025312 112 SCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYI------GLSEASPGTIRRAHA 174 (255)
Q Consensus 112 ~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~vr~i------Gvsn~~~~~l~~~~~ 174 (255)
..+-+.|++.|.. ..+.+|...+..-.++++++++.|++.|..-.. |+ |.+.+.+.++.+
T Consensus 187 ~ell~~L~~~g~~--v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gv-Nd~~~~l~~l~~ 252 (321)
T TIGR03822 187 PALIAALKTSGKT--VYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGV-NDDPETLAALMR 252 (321)
T ss_pred HHHHHHHHHcCCc--EEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCC-CCCHHHHHHHHH
Confidence 4444566666732 357788765544457899999999999962211 43 567666666554
No 73
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=52.85 E-value=1.1e+02 Score=27.42 Aligned_cols=60 Identities=13% Similarity=0.012 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHHHhHcCCCcceEEeccc-CCC------------CCCHH---HHH-HHHHHHHHhCCcceEEcCCCCH
Q 025312 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHR-VDT------------SVPIE---ETI-GEMKKLVEEGKIKYIGLSEASP 166 (255)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH~-~~~------------~~~~~---~~~-~~l~~l~~~G~vr~iGvsn~~~ 166 (255)
-+.+.+++.++..++ |+.++|.+|.+.- |+. ..+.+ +.+ .+.+.|.+.|-. ++++|||..
T Consensus 174 qt~e~~~~~l~~~~~-l~p~his~y~L~i~~gT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~-~yeis~fa~ 250 (390)
T PRK06582 174 QTLKDWQEELKQAMQ-LATSHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLESKKYF-RYEISNYAK 250 (390)
T ss_pred CCHHHHHHHHHHHHh-cCCCEEEEecCEEccCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCc-eeeceeeeC
Confidence 578889999998886 8999999998863 211 01111 223 345567777875 589999964
No 74
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=51.91 E-value=35 Score=30.99 Aligned_cols=151 Identities=17% Similarity=0.172 Sum_probs=89.6
Q ss_pred CCCcccccceecccccCCCCCCCCCHHHHHHHHHHHHHcCCCcee--cc--cccCC------CchHHHHHHHHhc---CC
Q 025312 15 TQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFD--TA--DVYGQ------NANEVLLGKALKQ---LP 81 (255)
Q Consensus 15 ~~g~~vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~a~~~Gi~~~D--tA--~~Yg~------g~se~~lg~~l~~---~~ 81 (255)
+|-..-|++-+-...+-..|.+. + -+...-+.|+..+- || +.|-. |.-|.++..+-+. ..
T Consensus 93 kTh~~APrVlIaNsnlVp~wanw---e----~f~el~~~Gl~myGQMTAGsWiYIGtQGIvqGTyeT~~~~~r~h~~gdL 165 (561)
T COG2987 93 KTHKDAPRVLIANSNLVPHWANW---E----HFNELDAKGLTMYGQMTAGSWIYIGTQGIVQGTYETFAEAGRQHFGGDL 165 (561)
T ss_pred ecCCCCCeEEEecCccccccccH---H----HHHHHHhhhhhheecccccceEEEcccceeechHHHHHHHHHHhcCCCc
Confidence 55556666666555443334321 2 22223334554332 22 33411 4557666555443 36
Q ss_pred CCceEEEecccccccCcc-------c--cccCCCHHHHHHHHHHHHhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHH
Q 025312 82 REKIQVATKFGIAGIGVA-------G--VIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVE 152 (255)
Q Consensus 82 R~~~~i~tK~~~~~~~~~-------~--~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~ 152 (255)
+..+++++-+|......+ . -....+...|. .||.+.|+|. ....++|+++-.++..+
T Consensus 166 ~Gk~~lTaGLGGMgGAQplA~~ma~~v~i~vevd~srI~-------~Rl~t~y~d~-------~a~~ldeAl~~a~~~~~ 231 (561)
T COG2987 166 KGKWVLTAGLGGMGGAQPLAATMAGAVCIAVEVDESRID-------KRLRTGYLDE-------IAETLDEALALAEEATA 231 (561)
T ss_pred cceEEEecCCCcccccchHHHHhcCceEEEEEeCHHHHH-------HHHhcchhhh-------hcCCHHHHHHHHHHHHh
Confidence 778899888764332111 0 01223333333 5778899884 22458899999999999
Q ss_pred hCCcceEEcCCCCHHHHHHHhhc-CCceEe--eccCC
Q 025312 153 EGKIKYIGLSEASPGTIRRAHAV-HPITAV--QMEWS 186 (255)
Q Consensus 153 ~G~vr~iGvsn~~~~~l~~~~~~-~~~~~~--q~~~n 186 (255)
+|+-.+||+-..-.+.+.++++. ..||++ |...+
T Consensus 232 ag~p~SIgl~GNaaei~~~l~~r~~~pD~vtDQTsaH 268 (561)
T COG2987 232 AGEPISIGLLGNAAEILPELLRRGIRPDLVTDQTSAH 268 (561)
T ss_pred cCCceEEEEeccHHHHHHHHHHcCCCCceeccccccc
Confidence 99999999999988999998876 345544 55444
No 75
>COG2062 SixA Phosphohistidine phosphatase SixA [Signal transduction mechanisms]
Probab=51.76 E-value=1e+02 Score=23.95 Aligned_cols=76 Identities=12% Similarity=0.036 Sum_probs=49.8
Q ss_pred HHHHHHHhc-CC-CCceEEEecccccccCccccccCCCHHHHHHHHHHHHhHcCCCcceEEecccCCCCCCHHHHHHHHH
Q 025312 71 VLLGKALKQ-LP-REKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMK 148 (255)
Q Consensus 71 ~~lg~~l~~-~~-R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~ 148 (255)
+.+|++|+. .. .+.+.+|+++ ..++..|...+.++.+.. -..++..+..+.....+.++
T Consensus 35 ~~~a~~L~~~~~~~D~VL~Spa~-----------------Ra~QTae~v~~~~~~~~~--~~~~~l~p~~d~~~~l~~l~ 95 (163)
T COG2062 35 ELVAAWLAGQGVEPDLVLVSPAV-----------------RARQTAEIVAEHLGEKKV--EVFEELLPNGDPGTVLDYLE 95 (163)
T ss_pred HHHHHHHHhcCCCCCEEEeChhH-----------------HHHHHHHHHHHhhCcccc--eeccccCCCCCHHHHHHHHH
Confidence 467889987 33 3445555554 346666666777773211 12334455667778888888
Q ss_pred HHHHhCCcceEEcCCCCHH
Q 025312 149 KLVEEGKIKYIGLSEASPG 167 (255)
Q Consensus 149 ~l~~~G~vr~iGvsn~~~~ 167 (255)
++.+ -+..+.+..|.|.
T Consensus 96 ~~~d--~v~~vllVgH~P~ 112 (163)
T COG2062 96 ALGD--GVGSVLLVGHNPL 112 (163)
T ss_pred Hhcc--cCceEEEECCCcc
Confidence 8877 6889999999874
No 76
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=51.24 E-value=1.4e+02 Score=27.30 Aligned_cols=60 Identities=20% Similarity=0.252 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHHhHcCCCcceEEecc-cCC----------C-CCCHH---HHH-HHHHHHHHhCCcceEEcCCCCH
Q 025312 105 GAPDYVRSCCEASLKRLDVDYIDLYYQH-RVD----------T-SVPIE---ETI-GEMKKLVEEGKIKYIGLSEASP 166 (255)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH-~~~----------~-~~~~~---~~~-~~l~~l~~~G~vr~iGvsn~~~ 166 (255)
-+.+.+.+.++..+ +++++++.++.+- .|. . ..+.+ +.+ .+.+.|.+.|-. .+++|||..
T Consensus 215 qt~e~~~~~l~~~~-~l~~~~i~~y~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~ye~s~far 290 (453)
T PRK09249 215 QTPESFARTLEKVL-ELRPDRLAVFNYAHVPWLFKAQRKIDEADLPSPEEKLAILQQTIETLTEAGYQ-YIGMDHFAL 290 (453)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEEccCccchhhhhHhcCCCcccCCCHHHHHHHHHHHHHHHHHCCCE-EEeccceeC
Confidence 57788888877766 4899999988753 111 0 01112 223 445667778876 499999964
No 77
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=51.21 E-value=1.6e+02 Score=26.66 Aligned_cols=60 Identities=10% Similarity=-0.071 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHHHHhHcCCCcceEEecccCCCC-------CCHH---HHH-HHHHHHHHhCCcceEEcCCCCH
Q 025312 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS-------VPIE---ETI-GEMKKLVEEGKIKYIGLSEASP 166 (255)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~-------~~~~---~~~-~~l~~l~~~G~vr~iGvsn~~~ 166 (255)
-+.+.+.+.++..+ +|+.+++.++.+.-.... ...+ +.+ .+.+.|.+.|. +.++++||..
T Consensus 205 qt~e~~~~~l~~~~-~l~~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy-~~yei~~far 275 (430)
T PRK08208 205 QTHASWMESLDQAL-VYRPEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLLEAGY-TQTSMRMFRR 275 (430)
T ss_pred CCHHHHHHHHHHHH-hCCCCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHHHcCC-eEEeecceec
Confidence 57888888888776 589999999887632211 0111 223 45566777786 5699999975
No 78
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=51.09 E-value=1.3e+02 Score=24.08 Aligned_cols=21 Identities=33% Similarity=0.563 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHHHHcCCCcee
Q 025312 39 SEEDGISMIKHAFSKGITFFD 59 (255)
Q Consensus 39 ~~~~~~~~l~~a~~~Gi~~~D 59 (255)
+++++.+++..+++.|+...|
T Consensus 9 D~~~~~~~v~~~l~~g~~~~~ 29 (201)
T cd02070 9 DEEETVELVKKALEAGIDPQD 29 (201)
T ss_pred CHHHHHHHHHHHHHcCCCHHH
Confidence 788899999999999977655
No 79
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=50.92 E-value=74 Score=26.26 Aligned_cols=83 Identities=16% Similarity=0.089 Sum_probs=53.0
Q ss_pred CCCHHHHHHHHHHHHhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHHhC-CcceEEcCCCCHHHHHHHhhcCCceEee
Q 025312 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG-KIKYIGLSEASPGTIRRAHAVHPITAVQ 182 (255)
Q Consensus 104 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G-~vr~iGvsn~~~~~l~~~~~~~~~~~~q 182 (255)
.++.+...+-++ .|.++|+++|.+-..-.+......+..++.++++++.+ .++...++....+.++.+.+. .++.++
T Consensus 15 ~~s~e~~~~i~~-~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~-g~~~i~ 92 (265)
T cd03174 15 TFSTEDKLEIAE-ALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEA-GVDEVR 92 (265)
T ss_pred CCCHHHHHHHHH-HHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhC-CcCEEE
Confidence 355565555444 47789999998876554422112245688888888888 577667776666777777664 355666
Q ss_pred ccCCcC
Q 025312 183 MEWSLW 188 (255)
Q Consensus 183 ~~~n~~ 188 (255)
+.+..-
T Consensus 93 i~~~~s 98 (265)
T cd03174 93 IFDSAS 98 (265)
T ss_pred EEEecC
Confidence 655443
No 80
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=50.47 E-value=2.1e+02 Score=26.45 Aligned_cols=113 Identities=12% Similarity=0.100 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHHHcCCCceecccccCCCch-HHHHHHHHhc-CCCCceEEEecccccccCccccccCCCHHHHHHHHHH
Q 025312 39 SEEDGISMIKHAFSKGITFFDTADVYGQNAN-EVLLGKALKQ-LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEA 116 (255)
Q Consensus 39 ~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~g~s-e~~lg~~l~~-~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (255)
+++-....++.|.+.|+..|=..++-..-++ +..+. +.++ +..-++.|+-... +.++.+.+.+.+++
T Consensus 103 pddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~-~ak~~G~~~~~~i~yt~s----------p~~t~~y~~~~a~~ 171 (468)
T PRK12581 103 ADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALR-AVKKTGKEAQLCIAYTTS----------PVHTLNYYLSLVKE 171 (468)
T ss_pred cchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHH-HHHHcCCEEEEEEEEEeC----------CcCcHHHHHHHHHH
Confidence 5677788899999999987766665543122 33333 2332 2211222322221 12566777776666
Q ss_pred HHhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHHhCCcceEEcCCCCHH
Q 025312 117 SLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPG 167 (255)
Q Consensus 117 sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn~~~~ 167 (255)
+..+|. |.+.|-..--.....++.+-+..+++...+ .||+=.|+..
T Consensus 172 -l~~~Ga---d~I~IkDtaG~l~P~~v~~Lv~alk~~~~~-pi~~H~Hnt~ 217 (468)
T PRK12581 172 -LVEMGA---DSICIKDMAGILTPKAAKELVSGIKAMTNL-PLIVHTHATS 217 (468)
T ss_pred -HHHcCC---CEEEECCCCCCcCHHHHHHHHHHHHhccCC-eEEEEeCCCC
Confidence 456885 455555544444556677777777765543 5888887653
No 81
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=50.32 E-value=1.9e+02 Score=25.92 Aligned_cols=129 Identities=13% Similarity=0.078 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHcCCCceecccccCC--CchHHHHHHHHhcCCCCceEEEecccccccCccccccCCCHHHHHHHHHHHHh
Q 025312 42 DGISMIKHAFSKGITFFDTADVYGQ--NANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLK 119 (255)
Q Consensus 42 ~~~~~l~~a~~~Gi~~~DtA~~Yg~--g~se~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 119 (255)
+..++++.|++.|+.-|=+...|.. ..++..+-+.++...+-...|.+..-... ....+.+.+.++.+ +
T Consensus 168 ~~~~l~~~al~~Ga~g~~~~~~y~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~--------~~e~~av~~~~~~a-~ 238 (415)
T cd01297 168 KMRELLREALEAGALGISTGLAYAPRLYAGTAELVALARVAARYGGVYQTHVRYEG--------DSILEALDELLRLG-R 238 (415)
T ss_pred HHHHHHHHHHHCCCeEEEcccccCCcccCCHHHHHHHHHHHHHcCCEEEEEECccc--------ccHHHHHHHHHHHH-H
Confidence 4466778889999977755445533 34677777777653333556666552110 11223344444333 2
Q ss_pred HcCCCcceEEecccCCCC----CCHHHHHHHHHHHHHhCCcceEEcCCCC---HHHHHHHhhcCCceEeec
Q 025312 120 RLDVDYIDLYYQHRVDTS----VPIEETIGEMKKLVEEGKIKYIGLSEAS---PGTIRRAHAVHPITAVQM 183 (255)
Q Consensus 120 ~L~~d~iDl~~lH~~~~~----~~~~~~~~~l~~l~~~G~vr~iGvsn~~---~~~l~~~~~~~~~~~~q~ 183 (255)
+.|. -+.+.|-.... ....++++.+++++++|.--...++.+. ...+.++++. .++++=.
T Consensus 239 ~~g~---r~~i~H~ss~~~~~~~~~~~~l~~i~~a~~~G~~v~~e~~p~~~~~~~~~~~l~~~-~~~~i~S 305 (415)
T cd01297 239 ETGR---PVHISHLKSAGAPNWGKIDRLLALIEAARAEGLQVTADVYPYGAGSEDDVRRIMAH-PVVMGGS 305 (415)
T ss_pred HhCC---CEEEEEEecCCCcccchHHHHHHHHHHHHHhCCcEEEEeCCCCCCcHHHHHHHHcC-CCceeee
Confidence 3342 35556654322 3456778888899998864455555553 4456666655 4444333
No 82
>PRK07094 biotin synthase; Provisional
Probab=50.13 E-value=1.7e+02 Score=25.20 Aligned_cols=117 Identities=16% Similarity=0.232 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHHHHcCCCceecc----cccCCCchHHHHHHHHhcCCC-CceEEEecccccccCccccccCCCHHHHHH
Q 025312 38 VSEEDGISMIKHAFSKGITFFDTA----DVYGQNANEVLLGKALKQLPR-EKIQVATKFGIAGIGVAGVIVKGAPDYVRS 112 (255)
Q Consensus 38 ~~~~~~~~~l~~a~~~Gi~~~DtA----~~Yg~g~se~~lg~~l~~~~R-~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~ 112 (255)
.+.++..+.++.+.+.|++.|--. +.| ..+.+-+.++.... ..+.+..-.+ ..+.+.+
T Consensus 70 ls~eei~~~~~~~~~~g~~~i~l~gG~~~~~----~~~~l~~l~~~i~~~~~l~i~~~~g-----------~~~~e~l-- 132 (323)
T PRK07094 70 LSPEEILECAKKAYELGYRTIVLQSGEDPYY----TDEKIADIIKEIKKELDVAITLSLG-----------ERSYEEY-- 132 (323)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCC----CHHHHHHHHHHHHccCCceEEEecC-----------CCCHHHH--
Confidence 367888888999999999877422 122 22334444443211 2343322111 1233333
Q ss_pred HHHHHHhHcCCCcceEEeccc--------CCCCCCHHHHHHHHHHHHHhCCcc----eEEcCCCCHHHHHHHhhc
Q 025312 113 CCEASLKRLDVDYIDLYYQHR--------VDTSVPIEETIGEMKKLVEEGKIK----YIGLSEASPGTIRRAHAV 175 (255)
Q Consensus 113 ~~~~sL~~L~~d~iDl~~lH~--------~~~~~~~~~~~~~l~~l~~~G~vr----~iGvsn~~~~~l~~~~~~ 175 (255)
+.|++.|++.+-+ -+.. ......+++.+++++.+++.|.-- -+|+...+.+++.+.+..
T Consensus 133 ---~~Lk~aG~~~v~~-glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~~ 203 (323)
T PRK07094 133 ---KAWKEAGADRYLL-RHETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILF 203 (323)
T ss_pred ---HHHHHcCCCEEEe-ccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHHH
Confidence 2456667655432 1111 112345788999999999999622 256656677776665443
No 83
>PRK08084 DNA replication initiation factor; Provisional
Probab=49.92 E-value=93 Score=25.51 Aligned_cols=45 Identities=11% Similarity=0.254 Sum_probs=32.7
Q ss_pred cceEEecccCCCC---CCHH-HHHHHHHHHHHhCCcceEEcCCCCHHHH
Q 025312 125 YIDLYYQHRVDTS---VPIE-ETIGEMKKLVEEGKIKYIGLSEASPGTI 169 (255)
Q Consensus 125 ~iDl~~lH~~~~~---~~~~-~~~~~l~~l~~~G~vr~iGvsn~~~~~l 169 (255)
..|+++|...+.. ..++ +..+.+..+++.|+++-|+.|+..+..+
T Consensus 97 ~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l 145 (235)
T PRK08084 97 QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQL 145 (235)
T ss_pred hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHc
Confidence 3588888766432 2233 4568888999999999999999887663
No 84
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=49.80 E-value=59 Score=27.34 Aligned_cols=78 Identities=15% Similarity=0.095 Sum_probs=50.9
Q ss_pred CHH-HHHHHHHHHHHcCCCceecccccCC-CchH---HHHHHHHhcC-CCCceEEEecccccccCccccccCCCHHHHHH
Q 025312 39 SEE-DGISMIKHAFSKGITFFDTADVYGQ-NANE---VLLGKALKQL-PREKIQVATKFGIAGIGVAGVIVKGAPDYVRS 112 (255)
Q Consensus 39 ~~~-~~~~~l~~a~~~Gi~~~DtA~~Yg~-g~se---~~lg~~l~~~-~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~ 112 (255)
+++ +...+.+.|.++|..|+=|+.-|+. |.+. +++-+.+++. ...+ +--|.... =.+.+....
T Consensus 144 ~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~~~~~~--vgIKAsGG---------Irt~~~A~~ 212 (257)
T PRK05283 144 KDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDMGVAKT--VGFKPAGG---------VRTAEDAAQ 212 (257)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhcccCCC--eeEEccCC---------CCCHHHHHH
Confidence 445 5888999999999999999999975 4433 3344444321 0111 33343111 147788888
Q ss_pred HHHHHHhHcCCCcce
Q 025312 113 CCEASLKRLDVDYID 127 (255)
Q Consensus 113 ~~~~sL~~L~~d~iD 127 (255)
-++.--+.||-+|++
T Consensus 213 ~i~ag~~~lg~~~~~ 227 (257)
T PRK05283 213 YLALADEILGADWAD 227 (257)
T ss_pred HHHHHHHHhChhhcC
Confidence 888888999988754
No 85
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=49.79 E-value=1.5e+02 Score=24.69 Aligned_cols=24 Identities=8% Similarity=0.187 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHHHHHcCCCceecc
Q 025312 38 VSEEDGISMIKHAFSKGITFFDTA 61 (255)
Q Consensus 38 ~~~~~~~~~l~~a~~~Gi~~~DtA 61 (255)
++.++..++++...++|+..++..
T Consensus 19 ~~~~~k~~i~~~L~~~Gv~~iEvg 42 (263)
T cd07943 19 FTLEQVRAIARALDAAGVPLIEVG 42 (263)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEee
Confidence 478889999999999999999987
No 86
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=49.56 E-value=1.6e+02 Score=27.29 Aligned_cols=37 Identities=8% Similarity=0.129 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHHhCCcce----EEcCCCCHHHHHHHhh
Q 025312 138 VPIEETIGEMKKLVEEGKIKY----IGLSEASPGTIRRAHA 174 (255)
Q Consensus 138 ~~~~~~~~~l~~l~~~G~vr~----iGvsn~~~~~l~~~~~ 174 (255)
...++..++++.+++.|..-. +|+-+.+.+.+++.++
T Consensus 320 ~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~ 360 (497)
T TIGR02026 320 TTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYR 360 (497)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHH
Confidence 346778888888999886332 5666777777666544
No 87
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=48.54 E-value=1.8e+02 Score=25.11 Aligned_cols=128 Identities=13% Similarity=0.140 Sum_probs=69.8
Q ss_pred CCHHHHHHHHHHHHHcCCCceecccccCCCc------hHHHHHHHHhcC-CCCceEEEecccccccCccccccCCCHHHH
Q 025312 38 VSEEDGISMIKHAFSKGITFFDTADVYGQNA------NEVLLGKALKQL-PREKIQVATKFGIAGIGVAGVIVKGAPDYV 110 (255)
Q Consensus 38 ~~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~g~------se~~lg~~l~~~-~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i 110 (255)
.+.++..++++.+.+.|++.+.-. | |+ -.+++.. +++. .-.++.|+|... .+
T Consensus 49 ls~eei~~~i~~~~~~gi~~I~~t---G-GEPll~~~l~~li~~-i~~~~~~~~i~itTNG~----------------ll 107 (331)
T PRK00164 49 LSLEEIERLVRAFVALGVRKVRLT---G-GEPLLRKDLEDIIAA-LAALPGIRDLALTTNGY----------------LL 107 (331)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE---C-CCCcCccCHHHHHHH-HHhcCCCceEEEEcCch----------------hH
Confidence 578899999999999999877643 3 21 1222222 2221 123566666531 01
Q ss_pred HHHHHHHHhHcCCCcceEEecccCCC--------CCCHHHHHHHHHHHHHhCC----cceEEcCCCCHHHHHHHhhc---
Q 025312 111 RSCCEASLKRLDVDYIDLYYQHRVDT--------SVPIEETIGEMKKLVEEGK----IKYIGLSEASPGTIRRAHAV--- 175 (255)
Q Consensus 111 ~~~~~~sL~~L~~d~iDl~~lH~~~~--------~~~~~~~~~~l~~l~~~G~----vr~iGvsn~~~~~l~~~~~~--- 175 (255)
.+. -+.|...|++.+- +-+|..++ ...+++++++++.+++.|. +..+.+...+.+++.++++.
T Consensus 108 ~~~-~~~L~~agl~~i~-ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~ 185 (331)
T PRK00164 108 ARR-AAALKDAGLDRVN-VSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKD 185 (331)
T ss_pred HHH-HHHHHHcCCCEEE-EEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHh
Confidence 122 2334455655443 33454433 1347889999999999885 22343334455555554443
Q ss_pred CCceEeeccCCcC
Q 025312 176 HPITAVQMEWSLW 188 (255)
Q Consensus 176 ~~~~~~q~~~n~~ 188 (255)
.++.+.-++|.+.
T Consensus 186 ~gv~v~~ie~~p~ 198 (331)
T PRK00164 186 RGIQLRFIELMPT 198 (331)
T ss_pred CCCeEEEEEeeEC
Confidence 4455555555554
No 88
>PRK06256 biotin synthase; Validated
Probab=48.25 E-value=1.8e+02 Score=25.13 Aligned_cols=118 Identities=19% Similarity=0.202 Sum_probs=61.3
Q ss_pred CCHHHHHHHHHHHHHcCCC-ceecccccCCCch-HHHHHHHHhcCC-CCceEEEecccccccCccccccCCCHHHHHHHH
Q 025312 38 VSEEDGISMIKHAFSKGIT-FFDTADVYGQNAN-EVLLGKALKQLP-REKIQVATKFGIAGIGVAGVIVKGAPDYVRSCC 114 (255)
Q Consensus 38 ~~~~~~~~~l~~a~~~Gi~-~~DtA~~Yg~g~s-e~~lg~~l~~~~-R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~ 114 (255)
.+.+++.+.++.+.+.|++ ++-.+..++.... -+.+-+.++... +-.+.+.+-.+. .+++.+
T Consensus 91 ~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~~i~~~~~~g~-----------l~~e~l---- 155 (336)
T PRK06256 91 LDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEETDLEICACLGL-----------LTEEQA---- 155 (336)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhcCCCcEEecCCc-----------CCHHHH----
Confidence 4788899999999999985 3322323332111 123444454321 122333332221 233333
Q ss_pred HHHHhHcCCCcceEEeccc-------CCCCCCHHHHHHHHHHHHHhCCcce----EEcCCCCHHHHHHHh
Q 025312 115 EASLKRLDVDYIDLYYQHR-------VDTSVPIEETIGEMKKLVEEGKIKY----IGLSEASPGTIRRAH 173 (255)
Q Consensus 115 ~~sL~~L~~d~iDl~~lH~-------~~~~~~~~~~~~~l~~l~~~G~vr~----iGvsn~~~~~l~~~~ 173 (255)
+-|++.|++.+-+- +.. ......+++.+++++.+++.|.--. +|+ +.+.+++.+.+
T Consensus 156 -~~LkeaG~~~v~~~-lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl-gEt~ed~~~~~ 222 (336)
T PRK06256 156 -ERLKEAGVDRYNHN-LETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGM-GESLEDRVEHA 222 (336)
T ss_pred -HHHHHhCCCEEecC-CccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeC-CCCHHHHHHHH
Confidence 34677786654321 111 1122346788999999999996322 344 55666655544
No 89
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=47.55 E-value=57 Score=26.04 Aligned_cols=67 Identities=18% Similarity=0.213 Sum_probs=41.5
Q ss_pred HHhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHHhCCcceEEcCCC-CHHHHHHHhhcCCceEeeccCCc
Q 025312 117 SLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA-SPGTIRRAHAVHPITAVQMEWSL 187 (255)
Q Consensus 117 sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn~-~~~~l~~~~~~~~~~~~q~~~n~ 187 (255)
.+..+|.||+-+.+. |.....+ ..+.+.++.+.-..+.+||..- +++.+.+..+...++++|+.-+-
T Consensus 14 ~~~~~g~d~~Gfi~~--~~S~R~v--~~~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~~~~ld~vQLHG~e 81 (197)
T PF00697_consen 14 LAAELGADYLGFIFY--PKSPRYV--SPDQARELVSAVPPKIVGVFVNQSPEEILEIVEELGLDVVQLHGDE 81 (197)
T ss_dssp HHHHHTSSEEEEE----TTCTTB----HHHHHHHHCCSSSSEEEEESSS-HHHHHHHHHHCTESEEEE-SGG
T ss_pred HHHHcCCCEEeeecC--CCCCCcc--CHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHHcCCCEEEECCCC
Confidence 456789999888643 4322222 2344445555544447888755 77788888888999999986555
No 90
>PRK09389 (R)-citramalate synthase; Provisional
Probab=47.42 E-value=2e+02 Score=26.68 Aligned_cols=26 Identities=8% Similarity=0.304 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHHHHcCCCceecccc
Q 025312 38 VSEEDGISMIKHAFSKGITFFDTADV 63 (255)
Q Consensus 38 ~~~~~~~~~l~~a~~~Gi~~~DtA~~ 63 (255)
++.++..++.+...++|+..|+....
T Consensus 21 ~s~e~K~~ia~~L~~~Gv~~IE~G~p 46 (488)
T PRK09389 21 LTPEEKLEIARKLDELGVDVIEAGSA 46 (488)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 47888899999999999999998643
No 91
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=46.78 E-value=2e+02 Score=25.18 Aligned_cols=24 Identities=8% Similarity=0.145 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHHHHHcCCCceecc
Q 025312 38 VSEEDGISMIKHAFSKGITFFDTA 61 (255)
Q Consensus 38 ~~~~~~~~~l~~a~~~Gi~~~DtA 61 (255)
++.++..+++...-++|+..|+.+
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEee
Confidence 478999999999999999999985
No 92
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=46.46 E-value=1.5e+02 Score=23.66 Aligned_cols=131 Identities=18% Similarity=0.130 Sum_probs=76.9
Q ss_pred CCHHHHHHHHHHHHHcCCCceecccccCCCchHHHHHHHHhcCCCCceEEEecccccccCccccccCCCHHHHHHHHHHH
Q 025312 38 VSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEAS 117 (255)
Q Consensus 38 ~~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 117 (255)
.+.++..++++.|.+.|+.-+=+.+.+ -+ ...+.++ ...+.+.+=++++... .+.+....++++.
T Consensus 14 ~t~~~i~~~~~~a~~~~~~av~v~p~~----v~-~~~~~l~---~~~~~v~~~~~fp~g~-------~~~~~k~~eve~A 78 (203)
T cd00959 14 ATEEDIRKLCDEAKEYGFAAVCVNPCF----VP-LAREALK---GSGVKVCTVIGFPLGA-------TTTEVKVAEAREA 78 (203)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcHHH----HH-HHHHHcC---CCCcEEEEEEecCCCC-------CcHHHHHHHHHHH
Confidence 378899999999999887665444333 12 2333333 2346666555543321 4556677778887
Q ss_pred HhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHHh--CCcce--EEcCCCCHHHHHHHhhc---CCceEeecc
Q 025312 118 LKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEE--GKIKY--IGLSEASPGTIRRAHAV---HPITAVQME 184 (255)
Q Consensus 118 L~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~--G~vr~--iGvsn~~~~~l~~~~~~---~~~~~~q~~ 184 (255)
++ +|.|-+|+++--..-...+++++++.+.++++. |..-. +...-.+.+.+..+.+. ...|++.+.
T Consensus 79 ~~-~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKTs 151 (203)
T cd00959 79 IA-DGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEAGADFIKTS 151 (203)
T ss_pred HH-cCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEcC
Confidence 76 699999987654432234556677777777776 33221 23333345555554333 445666665
No 93
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=45.79 E-value=2e+02 Score=24.76 Aligned_cols=94 Identities=13% Similarity=0.056 Sum_probs=54.1
Q ss_pred CCceEEEecccccccCccccccCCCHHHHHHHHHHHHhHcCCCcceEEecccCCCCC----------CHHHHHHHHHHHH
Q 025312 82 REKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSV----------PIEETIGEMKKLV 151 (255)
Q Consensus 82 R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~----------~~~~~~~~l~~l~ 151 (255)
.+++.|..|+....... ...+.+... .+-+.|+.+|+|||++ |...... .....++.+..++
T Consensus 206 g~d~~i~vris~~~~~~----~g~~~~e~~-~la~~l~~~G~d~i~v---s~g~~~~~~~~~~~~~~~~~~~~~~~~~ir 277 (327)
T cd02803 206 GPDFPVGVRLSADDFVP----GGLTLEEAI-EIAKALEEAGVDALHV---SGGSYESPPPIIPPPYVPEGYFLELAEKIK 277 (327)
T ss_pred CCCceEEEEechhccCC----CCCCHHHHH-HHHHHHHHcCCCEEEe---CCCCCcccccccCCCCCCcchhHHHHHHHH
Confidence 35688899986532110 113444443 3344567788776654 3322111 0122355566666
Q ss_pred HhCCcceEEcCCC-CHHHHHHHhhcCCceEeec
Q 025312 152 EEGKIKYIGLSEA-SPGTIRRAHAVHPITAVQM 183 (255)
Q Consensus 152 ~~G~vr~iGvsn~-~~~~l~~~~~~~~~~~~q~ 183 (255)
+.=.+--++..+. +++.++++++....+.+++
T Consensus 278 ~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~i 310 (327)
T cd02803 278 KAVKIPVIAVGGIRDPEVAEEILAEGKADLVAL 310 (327)
T ss_pred HHCCCCEEEeCCCCCHHHHHHHHHCCCCCeeee
Confidence 6656777777777 4888999988766676665
No 94
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=45.59 E-value=1.2e+02 Score=24.26 Aligned_cols=70 Identities=21% Similarity=0.294 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHHHcCCCceecccccCC-Cc---hHHHHHHHHhcCCCCceEEEecccccccCccccccCCCHHHHHHHH
Q 025312 39 SEEDGISMIKHAFSKGITFFDTADVYGQ-NA---NEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCC 114 (255)
Q Consensus 39 ~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~-g~---se~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~ 114 (255)
++++...+.+.|.++|..++=|+.-|.. |. .-+.+.+.++ .. +-.|.... . .+.+...+-+
T Consensus 129 ~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~----~~--v~ik~aGG--------i-kt~~~~l~~~ 193 (203)
T cd00959 129 TDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVG----GR--VGVKAAGG--------I-RTLEDALAMI 193 (203)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhC----CC--ceEEEeCC--------C-CCHHHHHHHH
Confidence 5678899999999999999999977763 22 2244555544 11 23333110 1 2666777777
Q ss_pred HHHHhHcCC
Q 025312 115 EASLKRLDV 123 (255)
Q Consensus 115 ~~sL~~L~~ 123 (255)
+.-..|+|+
T Consensus 194 ~~g~~riG~ 202 (203)
T cd00959 194 EAGATRIGT 202 (203)
T ss_pred HhChhhccC
Confidence 766677775
No 95
>PRK09061 D-glutamate deacylase; Validated
Probab=45.14 E-value=2.6e+02 Score=26.01 Aligned_cols=115 Identities=9% Similarity=0.020 Sum_probs=66.1
Q ss_pred HHHHHHHHHHcCCCceecccccCCCchHHHHHHHHhcCCCCceEEEecccccccCccccccCCCHHHHHHHHHHHHhHcC
Q 025312 43 GISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLD 122 (255)
Q Consensus 43 ~~~~l~~a~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~ 122 (255)
..++++.|++.|...|=+...|-++.+...+-+.++...+.+..|........ ..+......++++.++...
T Consensus 171 m~~ll~~al~~Ga~gis~~~~y~p~~~~~eL~~l~~~A~~~g~~v~~H~e~~~--------~~~~~~e~~av~~~i~lA~ 242 (509)
T PRK09061 171 ILELLEQGLDEGALGIGIGAGYAPGTGHKEYLELARLAARAGVPTYTHVRYLS--------NVDPRSSVDAYQELIAAAA 242 (509)
T ss_pred HHHHHHHHHHCCCCEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEEEecCcc--------cCCchhHHHHHHHHHHHHH
Confidence 57778888999999997655664444566666666653444667777653211 0112222334444443322
Q ss_pred CCcceEEecccCCC-CCCHHHHHHHHHHHHHhCCcceEEcCCCC
Q 025312 123 VDYIDLYYQHRVDT-SVPIEETIGEMKKLVEEGKIKYIGLSEAS 165 (255)
Q Consensus 123 ~d~iDl~~lH~~~~-~~~~~~~~~~l~~l~~~G~vr~iGvsn~~ 165 (255)
..-.-+.+.|-... .....+.++.+++++++|.--..-++-|.
T Consensus 243 ~~G~rv~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~e~~P~~ 286 (509)
T PRK09061 243 ETGAHMHICHVNSTSLRDIDRCLALVEKAQAQGLDVTTEAYPYG 286 (509)
T ss_pred HhCCCEEEEeeccCCcccHHHHHHHHHHHHHcCCcEEEEecCcc
Confidence 11133566665432 23467789999999999965445555444
No 96
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=43.69 E-value=1.8e+02 Score=25.59 Aligned_cols=90 Identities=10% Similarity=-0.001 Sum_probs=59.0
Q ss_pred cccCCCHHHHHHHHHHHHhHcCCCcc-eEEecccCCCCCCHHHHHHHHHHHHH-hCC---cceEEcCCCC-HHHHHHHhh
Q 025312 101 VIVKGAPDYVRSCCEASLKRLDVDYI-DLYYQHRVDTSVPIEETIGEMKKLVE-EGK---IKYIGLSEAS-PGTIRRAHA 174 (255)
Q Consensus 101 ~~~~~~~~~i~~~~~~sL~~L~~d~i-Dl~~lH~~~~~~~~~~~~~~l~~l~~-~G~---vr~iGvsn~~-~~~l~~~~~ 174 (255)
...+.+.+.|..++......++. .+ -++++-.=+|....+.+.++++.+++ .|. -|++-||+.. ...+.++.+
T Consensus 125 ~~rnlt~~EI~~qv~~~~~~~~~-~~~gvV~mggGEPLln~d~v~~~l~~l~~~~gi~~~~r~itvsTsG~~p~i~~l~~ 203 (342)
T PRK14454 125 MVRNLTAGEMLDQILAAQNDIGE-RISNIVLMGSGEPLDNYENVMKFLKIVNSPYGLNIGQRHITLSTCGIVPKIYELAD 203 (342)
T ss_pred CcccCCHHHHHHHHHHHHHHhcC-CCCCEEEECCchhhcCHHHHHHHHHHHhcccccCcCCCceEEECcCChhHHHHHHh
Confidence 34578999999999988776652 23 34555555666677889999999997 576 3577887742 234666665
Q ss_pred cCCceEeeccCCcCCcC
Q 025312 175 VHPITAVQMEWSLWTRD 191 (255)
Q Consensus 175 ~~~~~~~q~~~n~~~~~ 191 (255)
......+.+..+..+..
T Consensus 204 ~~~~~~laisLka~d~e 220 (342)
T PRK14454 204 ENLQITLAISLHAPNDE 220 (342)
T ss_pred hcccceEEEecCCCCHH
Confidence 43333356666655543
No 97
>PLN02389 biotin synthase
Probab=43.58 E-value=2.4e+02 Score=25.19 Aligned_cols=136 Identities=16% Similarity=0.149 Sum_probs=70.2
Q ss_pred CCHHHHHHHHHHHHHcCCCceeccccc-CC-C--chHHHHHHHHhcCCCCceEEEecccccccCccccccCCCHHHHHHH
Q 025312 38 VSEEDGISMIKHAFSKGITFFDTADVY-GQ-N--ANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSC 113 (255)
Q Consensus 38 ~~~~~~~~~l~~a~~~Gi~~~DtA~~Y-g~-g--~se~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~ 113 (255)
.+.+++.+..+.+.+.|++.|--...+ +. + ..-+.+-+.++......+.|....|. .+.+.+
T Consensus 116 Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l~i~~s~G~-----------l~~E~l--- 181 (379)
T PLN02389 116 MSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGMEVCCTLGM-----------LEKEQA--- 181 (379)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCcEEEECCCC-----------CCHHHH---
Confidence 578899999999999999877432111 11 1 01234455555433223445433332 233333
Q ss_pred HHHHHhHcCCCcceEEeccc-C------CCCCCHHHHHHHHHHHHHhCCcc----eEEcCCCCHHHHHHHh---hcCCce
Q 025312 114 CEASLKRLDVDYIDLYYQHR-V------DTSVPIEETIGEMKKLVEEGKIK----YIGLSEASPGTIRRAH---AVHPIT 179 (255)
Q Consensus 114 ~~~sL~~L~~d~iDl~~lH~-~------~~~~~~~~~~~~l~~l~~~G~vr----~iGvsn~~~~~l~~~~---~~~~~~ 179 (255)
+-|+..|+|++-.-+ .. + -....+++.++.++.+++.|.-- =+|+ +.+.+++.+.+ ...++.
T Consensus 182 --~~LkeAGld~~~~~L-eTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGl-gEt~edrv~~l~~Lr~L~~~ 257 (379)
T PLN02389 182 --AQLKEAGLTAYNHNL-DTSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIGL-GEAEEDRVGLLHTLATLPEH 257 (379)
T ss_pred --HHHHHcCCCEEEeee-cCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECC-CCCHHHHHHHHHHHHhcccC
Confidence 335555776543321 11 1 11235788999999999998521 1344 44554433322 222223
Q ss_pred EeeccCCcCCcC
Q 025312 180 AVQMEWSLWTRD 191 (255)
Q Consensus 180 ~~q~~~n~~~~~ 191 (255)
...+.+|++.+.
T Consensus 258 ~~~v~l~~l~P~ 269 (379)
T PLN02389 258 PESVPINALVAV 269 (379)
T ss_pred CcEEecccceec
Confidence 344555665553
No 98
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=43.43 E-value=1.3e+02 Score=21.97 Aligned_cols=64 Identities=13% Similarity=0.228 Sum_probs=40.3
Q ss_pred CCCceEEEecccccccCccccccCCCHHHHHHHHHHHHhHcC--CCcceEEecccCCCC-CCHHHHHHHHHHHHHh
Q 025312 81 PREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLD--VDYIDLYYQHRVDTS-VPIEETIGEMKKLVEE 153 (255)
Q Consensus 81 ~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~--~d~iDl~~lH~~~~~-~~~~~~~~~l~~l~~~ 153 (255)
+|=-+.|+-|++... ..+..|++.+.++.+... +.-.|++++..+... .++.++.+.|..|.+.
T Consensus 44 ~R~G~~VsKK~~~~A---------V~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~~~~~~~l~~~l~~ll~k 110 (120)
T PRK04390 44 PRLGLVVGKKTAKRA---------VERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFDRATAKQAVAELAQLMAK 110 (120)
T ss_pred ceEEEEEecccCcch---------hhhhHHHHHHHHHHHhccccCCCceEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 455567777754221 456667777777765443 235699999988643 4666777777666554
No 99
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=43.18 E-value=2e+02 Score=25.36 Aligned_cols=86 Identities=9% Similarity=0.076 Sum_probs=54.2
Q ss_pred ccCCCHHHHHHHHHHHHhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHH-hCC---cceEEcCCCC-HHHHHHHhhcC
Q 025312 102 IVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVE-EGK---IKYIGLSEAS-PGTIRRAHAVH 176 (255)
Q Consensus 102 ~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~-~G~---vr~iGvsn~~-~~~l~~~~~~~ 176 (255)
....+.+.|..++....+..++++| .+.-.-+|...++++.++++.+.+ .|. .+++-||+.. ...+.++....
T Consensus 128 ~r~lt~~EI~~qv~~~~~~~~i~~I--vfmG~GEPl~n~~~vi~~l~~l~~~~gl~~s~r~itVsTnGl~~~i~~l~~~~ 205 (349)
T PRK14463 128 TRNLTTAEIVNQVCAVKRDVPVRNI--VFMGMGEPLANLDNVIPALQILTDPDGLQFSTRKVTVSTSGLVPEMEELGREV 205 (349)
T ss_pred CCCCCHHHHHHHHHHHHhcCCccEE--EEecCCcchhcHHHHHHHHHHhhcccccCcCCceEEEECCCchHHHHHHhhcc
Confidence 4568999999999887766665443 444433455567889999999886 565 4788887764 35566655432
Q ss_pred CceEeeccCCcCCc
Q 025312 177 PITAVQMEWSLWTR 190 (255)
Q Consensus 177 ~~~~~q~~~n~~~~ 190 (255)
. ..+.+..+..++
T Consensus 206 ~-~~LaiSL~a~~~ 218 (349)
T PRK14463 206 T-VNLAVSLNATTD 218 (349)
T ss_pred C-eEEEEeCCCCCH
Confidence 2 223344444443
No 100
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=42.78 E-value=2.4e+02 Score=24.93 Aligned_cols=40 Identities=5% Similarity=0.113 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHHHcCCCceecccccCCCchH-HHHHHHHh
Q 025312 38 VSEEDGISMIKHAFSKGITFFDTADVYGQNANE-VLLGKALK 78 (255)
Q Consensus 38 ~~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~g~se-~~lg~~l~ 78 (255)
++.++..++++..-+.|+..|+.+...- +..| +.+.+..+
T Consensus 20 ~s~~~k~~ia~~L~~~Gv~~IEvG~p~~-~~~~~e~i~~i~~ 60 (365)
T TIGR02660 20 FTAAEKLAIARALDEAGVDELEVGIPAM-GEEERAVIRAIVA 60 (365)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCC-CHHHHHHHHHHHH
Confidence 4788899999999999999999863221 2233 55555444
No 101
>PRK03459 rnpA ribonuclease P; Reviewed
Probab=42.70 E-value=1.3e+02 Score=22.00 Aligned_cols=63 Identities=11% Similarity=0.023 Sum_probs=42.8
Q ss_pred CCCceEEEecccccccCccccccCCCHHHHHHHHHHHHhHcCC---CcceEEecccCCCC-CCHHHHHHHHHHHHHh
Q 025312 81 PREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDV---DYIDLYYQHRVDTS-VPIEETIGEMKKLVEE 153 (255)
Q Consensus 81 ~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~---d~iDl~~lH~~~~~-~~~~~~~~~l~~l~~~ 153 (255)
+|=-+.|+-|+|.. ..+..+++.+.++.+.+.. .-.|++++-.+... .++.++.+.|+.+.+.
T Consensus 48 ~R~G~~VsKKvG~A----------V~RNRiKR~lRe~~R~~~~~l~~g~D~Viiar~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03459 48 PRFGLVVSKAVGNA----------VIRHRVSRRLRHICADIVDQVPETHHVVIRALPGAATASSAELERDVRAGLGK 114 (122)
T ss_pred CEEEEEEeeeccch----------hHHHHHHHHHHHHHHHhhhccCCCcEEEEEECcccccCCHHHHHHHHHHHHHH
Confidence 55667888888643 3556677777776666643 24799999887643 4677777777776655
No 102
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=42.70 E-value=2e+02 Score=25.26 Aligned_cols=134 Identities=17% Similarity=0.229 Sum_probs=76.7
Q ss_pred CCHHHHHHHHHHHHHcC-CCceecccccCCCchHHHHHHHHhcCC-CCceEEEecccccccCccccccCCCHHHHHHHHH
Q 025312 38 VSEEDGISMIKHAFSKG-ITFFDTADVYGQNANEVLLGKALKQLP-REKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCE 115 (255)
Q Consensus 38 ~~~~~~~~~l~~a~~~G-i~~~DtA~~Yg~g~se~~lg~~l~~~~-R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (255)
.+.+++.+.-+.|-+.| .++...|..++.+..-+.+-++++... --.+-+.--+|. .+.+..
T Consensus 84 ~~~eeIle~Ak~ak~~Ga~r~c~~aagr~~~~~~~~i~~~v~~Vk~~~~le~c~slG~-----------l~~eq~----- 147 (335)
T COG0502 84 MEVEEILEAAKKAKAAGATRFCMGAAGRGPGRDMEEVVEAIKAVKEELGLEVCASLGM-----------LTEEQA----- 147 (335)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEEEeccCCCccHHHHHHHHHHHHHhcCcHHhhccCC-----------CCHHHH-----
Confidence 45677777778888999 888888888863334444445554311 111222222221 233333
Q ss_pred HHHhHcCCCcceEEecccCCC----------CCCHHHHHHHHHHHHHhCCcce----EEcCCCCHHHHHHHhhcCCce-E
Q 025312 116 ASLKRLDVDYIDLYYQHRVDT----------SVPIEETIGEMKKLVEEGKIKY----IGLSEASPGTIRRAHAVHPIT-A 180 (255)
Q Consensus 116 ~sL~~L~~d~iDl~~lH~~~~----------~~~~~~~~~~l~~l~~~G~vr~----iGvsn~~~~~l~~~~~~~~~~-~ 180 (255)
+-|+.-|+|+ +-|+.+. ...+++-++.++.+++.|.=-. +|+..-.-+.++-+....... .
T Consensus 148 ~~L~~aGvd~----ynhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~p 223 (335)
T COG0502 148 EKLADAGVDR----YNHNLETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPTP 223 (335)
T ss_pred HHHHHcChhh----eecccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHHHHhCCCC
Confidence 3466778775 3465543 2357899999999999997433 334444334444443332222 5
Q ss_pred eeccCCcCCcC
Q 025312 181 VQMEWSLWTRD 191 (255)
Q Consensus 181 ~q~~~n~~~~~ 191 (255)
-.+++|.+++.
T Consensus 224 dsVPIn~l~P~ 234 (335)
T COG0502 224 DSVPINFLNPI 234 (335)
T ss_pred CeeeeeeecCC
Confidence 56677777764
No 103
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=42.33 E-value=2.4e+02 Score=24.72 Aligned_cols=94 Identities=12% Similarity=0.009 Sum_probs=51.8
Q ss_pred EEEecccccccCccccccCCCHHHHHHHHHHHHhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHHhCCcceEEcCCCC
Q 025312 86 QVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEAS 165 (255)
Q Consensus 86 ~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn~~ 165 (255)
+|..|+......++ .....+.+... .+-+.|++.|+|++++-.-..... . -...++..+++++.=.+--+++.+++
T Consensus 220 ~v~vRis~~~~~~~-~~~~~~~ee~~-~~~~~l~~~g~d~i~vs~g~~~~~-~-~~~~~~~~~~ik~~~~ipvi~~G~i~ 295 (338)
T cd02933 220 RVGIRLSPFGTFND-MGDSDPEATFS-YLAKELNKRGLAYLHLVEPRVAGN-P-EDQPPDFLDFLRKAFKGPLIAAGGYD 295 (338)
T ss_pred ceEEEECccccCCC-CCCCCCHHHHH-HHHHHHHHcCCcEEEEecCCCCCc-c-cccchHHHHHHHHHcCCCEEEECCCC
Confidence 58888864321100 01123444433 355566777877777622111111 1 11234455555555567778888888
Q ss_pred HHHHHHHhhcCCceEeec
Q 025312 166 PGTIRRAHAVHPITAVQM 183 (255)
Q Consensus 166 ~~~l~~~~~~~~~~~~q~ 183 (255)
++..+++++....|.+.+
T Consensus 296 ~~~a~~~l~~g~~D~V~~ 313 (338)
T cd02933 296 AESAEAALADGKADLVAF 313 (338)
T ss_pred HHHHHHHHHcCCCCEEEe
Confidence 888888888766666544
No 104
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=41.91 E-value=1.1e+02 Score=23.68 Aligned_cols=73 Identities=16% Similarity=0.120 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHHcCCCceecccccCCCchHHHHHHHHhcCCCCceEEEec-ccccccCccccccCCCHHHHHHHHHHH
Q 025312 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATK-FGIAGIGVAGVIVKGAPDYVRSCCEAS 117 (255)
Q Consensus 39 ~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~R~~~~i~tK-~~~~~~~~~~~~~~~~~~~i~~~~~~s 117 (255)
+++...-.+.+|-+.|+.+|=.|..||. +-.-+-+.+.. . =.+++.|. .|... -+...+...+++-
T Consensus 12 T~~tle~a~erA~elgik~~vVAS~tG~--tA~k~lemveg-~-lkvVvVthh~Gf~e---------~g~~e~~~E~~~~ 78 (186)
T COG1751 12 TDETLEIAVERAKELGIKHIVVASSTGY--TALKALEMVEG-D-LKVVVVTHHAGFEE---------KGTQEMDEEVRKE 78 (186)
T ss_pred hHHHHHHHHHHHHhcCcceEEEEecccH--HHHHHHHhccc-C-ceEEEEEeeccccc---------CCceecCHHHHHH
Confidence 4566677888899999999999999985 32222222221 1 23555554 33332 2334567778888
Q ss_pred HhHcCCC
Q 025312 118 LKRLDVD 124 (255)
Q Consensus 118 L~~L~~d 124 (255)
|+..|.+
T Consensus 79 L~erGa~ 85 (186)
T COG1751 79 LKERGAK 85 (186)
T ss_pred HHHcCce
Confidence 8888854
No 105
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=41.89 E-value=50 Score=27.40 Aligned_cols=75 Identities=15% Similarity=0.270 Sum_probs=43.2
Q ss_pred CCCcccccceecccccCCCCCCC--CCHHHHHHHHH----HHHHcCCCceeccc---ccCCCchHHHHHHHHh---c---
Q 025312 15 TQGLEVSKLGYGCMNLSGGYSSP--VSEEDGISMIK----HAFSKGITFFDTAD---VYGQNANEVLLGKALK---Q--- 79 (255)
Q Consensus 15 ~~g~~vs~lg~Gt~~~~~~~~~~--~~~~~~~~~l~----~a~~~Gi~~~DtA~---~Yg~g~se~~lg~~l~---~--- 79 (255)
.+|+.+|.+||.+-+=- -+|+. ...+++.+++. .|.++|||.|-.|. .|-. .++....+++. .
T Consensus 65 etgv~ipSmClSaHRRf-PfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~-~d~eT~~rFi~g~~~a~~ 142 (287)
T COG3623 65 ETGVRIPSMCLSAHRRF-PFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEE-ADEETRQRFIEGLKWAVE 142 (287)
T ss_pred HhCCCccchhhhhhccC-CCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeecc-CCHHHHHHHHHHHHHHHH
Confidence 68999999999775311 13443 23445555544 55688999998775 2322 23444444443 2
Q ss_pred -CCCCceEEEecc
Q 025312 80 -LPREKIQVATKF 91 (255)
Q Consensus 80 -~~R~~~~i~tK~ 91 (255)
..+.++.++--+
T Consensus 143 lA~~aqV~lAvEi 155 (287)
T COG3623 143 LAARAQVMLAVEI 155 (287)
T ss_pred HHHhhccEEEeee
Confidence 245566666554
No 106
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=41.85 E-value=1.5e+02 Score=26.86 Aligned_cols=104 Identities=15% Similarity=0.257 Sum_probs=70.3
Q ss_pred HHHHHHHHHcCCCceecccccCC-CchHHHHHHHHhcCCCCceEEEecccccccCccccccCCCHHHHHHHHHHHHhHcC
Q 025312 44 ISMIKHAFSKGITFFDTADVYGQ-NANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLD 122 (255)
Q Consensus 44 ~~~l~~a~~~Gi~~~DtA~~Yg~-g~se~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~ 122 (255)
...+.++++.|- +-..-.||+ |...+.+.+.|...-.-.|.-.+-+ ..+.+.+++.++++.++++
T Consensus 36 ~~~lrr~v~~~~--l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv------------~~gvkdlr~i~e~a~~~~~ 101 (436)
T COG2256 36 GKPLRRAVEAGH--LHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV------------TSGVKDLREIIEEARKNRL 101 (436)
T ss_pred CchHHHHHhcCC--CceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc------------cccHHHHHHHHHHHHHHHh
Confidence 356788888763 223336877 7778889998875222222222211 2467889999999988887
Q ss_pred CCcceEEec---ccCCCCCCHHHHHHHHHHHHHhCCcceEEcCCCCH
Q 025312 123 VDYIDLYYQ---HRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASP 166 (255)
Q Consensus 123 ~d~iDl~~l---H~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn~~~ 166 (255)
..+==+++| |+.+ ...-++|--.++.|.|-.||-++-+|
T Consensus 102 ~gr~tiLflDEIHRfn-----K~QQD~lLp~vE~G~iilIGATTENP 143 (436)
T COG2256 102 LGRRTILFLDEIHRFN-----KAQQDALLPHVENGTIILIGATTENP 143 (436)
T ss_pred cCCceEEEEehhhhcC-----hhhhhhhhhhhcCCeEEEEeccCCCC
Confidence 554455555 4433 23567888899999999999998876
No 107
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=41.50 E-value=1.5e+02 Score=22.09 Aligned_cols=62 Identities=21% Similarity=0.231 Sum_probs=42.7
Q ss_pred CCCceEEEecccccccCccccccCCCHHHHHHHHHHHHhHcCC----CcceEEecccCCCC-CCHHHHHHHHHHHHH
Q 025312 81 PREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDV----DYIDLYYQHRVDTS-VPIEETIGEMKKLVE 152 (255)
Q Consensus 81 ~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~----d~iDl~~lH~~~~~-~~~~~~~~~l~~l~~ 152 (255)
+|=-+.|+-|+|.. ..+..|++.+.++++.+.. ...|++++-.+... .++.++-+.|+.+.+
T Consensus 47 ~RvG~~VSKKvG~A----------V~RNRiKR~lRE~fR~~~~~~~~~g~DiVivar~~~~~~~~~~l~~~L~~~l~ 113 (129)
T PRK01313 47 PRVGFTVTKKNGNA----------VERNRIRRRLKEAVRLHAGFDMAPGTDYVIVARRDALNAPFSQLTEELSRRIE 113 (129)
T ss_pred cEEEEEEecccCcc----------hHHHHHHHHHHHHHHHhchhccCCCceEEEEECcccccCCHHHHHHHHHHHHH
Confidence 45557777787642 4667788888888776642 56899999988643 456677777766555
No 108
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=41.31 E-value=2e+02 Score=23.63 Aligned_cols=26 Identities=15% Similarity=0.219 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHHHHcCCCceecccc
Q 025312 38 VSEEDGISMIKHAFSKGITFFDTADV 63 (255)
Q Consensus 38 ~~~~~~~~~l~~a~~~Gi~~~DtA~~ 63 (255)
.+.++..++++...+.|+..|+....
T Consensus 16 ~s~e~~~~i~~~L~~~GV~~IEvg~~ 41 (265)
T cd03174 16 FSTEDKLEIAEALDEAGVDSIEVGSG 41 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeccC
Confidence 37788999999999999999986643
No 109
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=41.18 E-value=1.8e+02 Score=24.04 Aligned_cols=75 Identities=17% Similarity=0.241 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHHcCCCceecccccCC-CchHHHHHHHHhcCCCCceEEEecccccccCccccccCCCHHHHHHHHHHH
Q 025312 39 SEEDGISMIKHAFSKGITFFDTADVYGQ-NANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEAS 117 (255)
Q Consensus 39 ~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~-g~se~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 117 (255)
++++...+.+.++++|..|+-|+.-+.. |...+-+ +.+++.... +++....+ .-.+.+....-++.-
T Consensus 138 t~ee~~~A~~i~~~aGAdFVKTSTGf~~~gAT~edv-~lM~~~vg~------~vgvKaSG-----GIrt~eda~~~i~ag 205 (228)
T COG0274 138 TDEEKRKACEIAIEAGADFVKTSTGFSAGGATVEDV-KLMKETVGG------RVGVKASG-----GIRTAEDAKAMIEAG 205 (228)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHH-HHHHHHhcc------CceeeccC-----CcCCHHHHHHHHHHh
Confidence 6677799999999999999999995544 4333322 223321111 11211111 115788888889988
Q ss_pred HhHcCCCc
Q 025312 118 LKRLDVDY 125 (255)
Q Consensus 118 L~~L~~d~ 125 (255)
..|+|++.
T Consensus 206 a~RiGtSs 213 (228)
T COG0274 206 ATRIGTSS 213 (228)
T ss_pred HHHhcccc
Confidence 99999763
No 110
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=40.84 E-value=2.6e+02 Score=24.85 Aligned_cols=25 Identities=8% Similarity=0.195 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHHHcCCCceeccc
Q 025312 38 VSEEDGISMIKHAFSKGITFFDTAD 62 (255)
Q Consensus 38 ~~~~~~~~~l~~a~~~Gi~~~DtA~ 62 (255)
++.++..++++...++|+..|+...
T Consensus 23 ~s~e~k~~ia~~L~~~GV~~IE~G~ 47 (378)
T PRK11858 23 FTNEEKLAIARMLDEIGVDQIEAGF 47 (378)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEeC
Confidence 3778889999999999999999763
No 111
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=40.31 E-value=1.4e+02 Score=21.71 Aligned_cols=64 Identities=17% Similarity=0.184 Sum_probs=42.9
Q ss_pred CCCceEEEecccccccCccccccCCCHHHHHHHHHHHHhHcCC---CcceEEecccCCCC-CCHHHHHHHHHHHHHh
Q 025312 81 PREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDV---DYIDLYYQHRVDTS-VPIEETIGEMKKLVEE 153 (255)
Q Consensus 81 ~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~---d~iDl~~lH~~~~~-~~~~~~~~~l~~l~~~ 153 (255)
+|=-+.|+-|++... ..+..|++.+.+..+.+.. ...|++++-.+... .++.++.+.|..|.++
T Consensus 47 ~R~G~~VsKK~~~~A---------V~RNriKR~lRe~~R~~~~~l~~g~diVvi~r~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03031 47 TRFGISISQKVSKKA---------VVRNRIKRQIRAALRQLLPRIAPGWDLVIIVKPTAAECNYEQFLQELEQLLIQ 114 (122)
T ss_pred cEEEEEEecccccch---------hhhhHHHHHHHHHHHHhhhccCCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 344466677754221 4566777777777766532 35799999888654 5677888888877766
No 112
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=40.24 E-value=3.1e+02 Score=25.49 Aligned_cols=136 Identities=10% Similarity=0.047 Sum_probs=67.5
Q ss_pred CCHHHHHHHHHHHHHcCCCceecccccCCCchHHHHHHHHhcCCCCceEEEeccc---ccc--cC----cc---------
Q 025312 38 VSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFG---IAG--IG----VA--------- 99 (255)
Q Consensus 38 ~~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~R~~~~i~tK~~---~~~--~~----~~--------- 99 (255)
++.++..++.+...+.|+..|+....-.+....+.+.+..+..+..++..-+... ... .. +.
T Consensus 20 ~s~e~K~~ia~~L~~~GV~~IEvG~p~~s~~d~e~v~~i~~~~~~~~i~al~r~~~~did~a~~al~~~~~~~v~i~~~~ 99 (494)
T TIGR00973 20 LTVEEKLQIALALERLGVDIIEAGFPVSSPGDFEAVQRIARTVKNPRVCGLARCVEKDIDAAAEALKPAEKFRIHTFIAT 99 (494)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEcCCCHHhHHHHHHhccccCCCEEEEEEcc
Confidence 4778888999999999999999654332211233342222222222222211100 000 00 00
Q ss_pred -----ccccCCCHHHHHHHHHHHHhHcCCCcceEEecccCCCC-CCHHHHHHHHHHHHHhCCcceEEcCCC----CHHHH
Q 025312 100 -----GVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS-VPIEETIGEMKKLVEEGKIKYIGLSEA----SPGTI 169 (255)
Q Consensus 100 -----~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~-~~~~~~~~~l~~l~~~G~vr~iGvsn~----~~~~l 169 (255)
....+.+++.+.+.+.++.+... ++-.-+.+..+|.. .+.+.+++.++.+.+.| +..|.++.. +|.++
T Consensus 100 S~~h~~~~l~~s~~e~l~~~~~~v~~a~-~~g~~v~f~~Ed~~r~d~~~l~~~~~~~~~~G-a~~i~l~DTvG~~~P~~~ 177 (494)
T TIGR00973 100 SPIHLEHKLKMTRDEVLERAVGMVKYAK-NFTDDVEFSCEDAGRTEIPFLARIVEAAINAG-ATTINIPDTVGYALPAEY 177 (494)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHH-HcCCeEEEEcCCCCCCCHHHHHHHHHHHHHcC-CCEEEeCCCCCCCCHHHH
Confidence 00123455555555555554442 11122444444432 45666777777777776 456777754 56666
Q ss_pred HHHhhc
Q 025312 170 RRAHAV 175 (255)
Q Consensus 170 ~~~~~~ 175 (255)
.++++.
T Consensus 178 ~~~i~~ 183 (494)
T TIGR00973 178 GNLIKG 183 (494)
T ss_pred HHHHHH
Confidence 655443
No 113
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=40.03 E-value=2.3e+02 Score=23.85 Aligned_cols=25 Identities=12% Similarity=0.195 Sum_probs=22.0
Q ss_pred CCHHHHHHHHHHHHHcCCCceeccc
Q 025312 38 VSEEDGISMIKHAFSKGITFFDTAD 62 (255)
Q Consensus 38 ~~~~~~~~~l~~a~~~Gi~~~DtA~ 62 (255)
.+.++..++....-++||..|+...
T Consensus 17 f~~~~~~~ia~~L~~~GVd~IEvG~ 41 (266)
T cd07944 17 FGDEFVKAIYRALAAAGIDYVEIGY 41 (266)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEeec
Confidence 4788999999999999999999874
No 114
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=39.77 E-value=86 Score=25.48 Aligned_cols=97 Identities=19% Similarity=0.183 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHHHHc-CCCceecccccCCCchHHHHHHHHhcCCCCceEEEecccccccCccccccCCCHHHHHHHHHHH
Q 025312 39 SEEDGISMIKHAFSK-GITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEAS 117 (255)
Q Consensus 39 ~~~~~~~~l~~a~~~-Gi~~~DtA~~Yg~g~se~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 117 (255)
+.+++..+.+...+. |+-|...++-|= +-+...+..+..+. .++++-.. +.+.+.+. +.
T Consensus 11 ~~eda~~a~~~gad~iG~If~~~SpR~V---s~~~a~~i~~~v~~-----~~~VgVf~--------n~~~~~i~----~i 70 (208)
T COG0135 11 RLEDAKAAAKAGADYIGFIFVPKSPRYV---SPEQAREIASAVPK-----VKVVGVFV--------NESIEEIL----EI 70 (208)
T ss_pred CHHHHHHHHHcCCCEEEEEEcCCCCCcC---CHHHHHHHHHhCCC-----CCEEEEEC--------CCCHHHHH----HH
Confidence 455555544443333 444455566665 45555555554332 12333221 23444443 44
Q ss_pred HhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHH---hCCcceEEcCCCC
Q 025312 118 LKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVE---EGKIKYIGLSEAS 165 (255)
Q Consensus 118 L~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~---~G~vr~iGvsn~~ 165 (255)
++.++ +|++|||...+ .+.++++++ -..++.+.++.-.
T Consensus 71 ~~~~~---ld~VQlHG~e~-------~~~~~~l~~~~~~~v~kai~v~~~~ 111 (208)
T COG0135 71 AEELG---LDAVQLHGDED-------PEYIDQLKEELGVPVIKAISVSEEG 111 (208)
T ss_pred HHhcC---CCEEEECCCCC-------HHHHHHHHhhcCCceEEEEEeCCcc
Confidence 44554 78999999743 333444444 4578899987654
No 115
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=39.71 E-value=3.1e+02 Score=25.52 Aligned_cols=101 Identities=10% Similarity=0.096 Sum_probs=56.2
Q ss_pred hHHHHHHHHhc----CCCCceEEEecccccccCccccccCCCHHHHHHHHHHHHhHcCCCcceEEecccCCCCCC----H
Q 025312 69 NEVLLGKALKQ----LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVP----I 140 (255)
Q Consensus 69 se~~lg~~l~~----~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~----~ 140 (255)
+++.+-++|++ .+.+-++|.|-+.+ +-|-..++...+.++.+.++++.++.|+.... .
T Consensus 69 ~~~~L~~aI~~~~~~~~P~~I~V~sTC~s--------------elIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~~~g~ 134 (511)
T TIGR01278 69 SQTRLVDTVRRVDDRFKPDLIVVTPSCTS--------------SLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKENQAA 134 (511)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEeCCChH--------------HHhccCHHHHHHHhccCCCcEEEecCCCcccchhHHH
Confidence 56777777766 23444666665422 22222233333344444588999998875533 2
Q ss_pred HHHHHHHHH-H----------HHhCCcceEEcCCC------CHHHHHHHhhcCCceEeec
Q 025312 141 EETIGEMKK-L----------VEEGKIKYIGLSEA------SPGTIRRAHAVHPITAVQM 183 (255)
Q Consensus 141 ~~~~~~l~~-l----------~~~G~vr~iGvsn~------~~~~l~~~~~~~~~~~~q~ 183 (255)
+.+++++.+ + .+.+.|--||.++. +...++++++...+.++.+
T Consensus 135 ~~al~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~v 194 (511)
T TIGR01278 135 DRTLTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNVV 194 (511)
T ss_pred HHHHHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEEE
Confidence 223332222 1 12455777888763 4467777887777766654
No 116
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=39.67 E-value=2.6e+02 Score=24.40 Aligned_cols=133 Identities=12% Similarity=0.071 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHHHHcCCCcee----------cccccCCC--chHHHHHHHHhcCC-CCceEEEecccccccCccccccCC
Q 025312 39 SEEDGISMIKHAFSKGITFFD----------TADVYGQN--ANEVLLGKALKQLP-REKIQVATKFGIAGIGVAGVIVKG 105 (255)
Q Consensus 39 ~~~~~~~~l~~a~~~Gi~~~D----------tA~~Yg~g--~se~~lg~~l~~~~-R~~~~i~tK~~~~~~~~~~~~~~~ 105 (255)
++++..+....+.+.|+..|| +...||.. ..-+.+.+.+++.+ .-.+-|+.|.-.... ...
T Consensus 75 ~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~------~~~ 148 (333)
T PRK11815 75 DPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGID------DQD 148 (333)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeC------CCc
Confidence 677777788888899999998 33445541 23345555555421 113567777622111 111
Q ss_pred CHHHHHHHHHHHHhHcCCCcceEEecccCCC-CCCHH---------HHHHHHHHHHHhC-CcceEEcCCC-CHHHHHHHh
Q 025312 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDT-SVPIE---------ETIGEMKKLVEEG-KIKYIGLSEA-SPGTIRRAH 173 (255)
Q Consensus 106 ~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~-~~~~~---------~~~~~l~~l~~~G-~vr~iGvsn~-~~~~l~~~~ 173 (255)
+.+. ...+-+.|+..| +|.+.+|.-.. ...+. --|+.+.++++.- .|--||.... +++++.+++
T Consensus 149 t~~~-~~~~~~~l~~aG---~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l 224 (333)
T PRK11815 149 SYEF-LCDFVDTVAEAG---CDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHL 224 (333)
T ss_pred CHHH-HHHHHHHHHHhC---CCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHH
Confidence 2222 223344456677 56677885321 00000 1267777777763 6777777665 778888877
Q ss_pred hcCCceEeec
Q 025312 174 AVHPITAVQM 183 (255)
Q Consensus 174 ~~~~~~~~q~ 183 (255)
+. .+.+++
T Consensus 225 ~~--aDgVmI 232 (333)
T PRK11815 225 QH--VDGVMI 232 (333)
T ss_pred hc--CCEEEE
Confidence 63 566655
No 117
>cd08590 PI-PLCc_Rv2075c_like Catalytic domain of uncharacterized Mycobacterium tuberculosis Rv2075c-like proteins. This subfamily corresponds to the catalytic domain present in uncharacterized Mycobacterium tuberculosis Rv2075c and its homologs. Members in this family are more closely related to the Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1(SaPLC1)-like proteins rather than the typical bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). In contrast, SaPLC1-like proteins have two Ca2+-chelating amino acid substitutions which convert them to metal-dependent bacterial PI-PLC. Rv2075c and its homologs have the same amino acid substitutions as well, which might suggest they have metal-dependent PI-PLC activity.
Probab=39.52 E-value=1.4e+02 Score=25.19 Aligned_cols=18 Identities=11% Similarity=0.195 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhCCcceE
Q 025312 142 ETIGEMKKLVEEGKIKYI 159 (255)
Q Consensus 142 ~~~~~l~~l~~~G~vr~i 159 (255)
..|-.|++++++||.--+
T Consensus 150 ~~wpTL~em~~~GkrViv 167 (267)
T cd08590 150 PNWPTKEDMLNSGKQVVL 167 (267)
T ss_pred CCCCCHHHHHhCCCEEEE
Confidence 358899999999995433
No 118
>PRK05588 histidinol-phosphatase; Provisional
Probab=39.50 E-value=2.2e+02 Score=23.54 Aligned_cols=79 Identities=15% Similarity=0.216 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHcCCCceecccccCCC---------chHHHHHHHHhcCCCCceEEEecccccccCccccccCCCHHHHH
Q 025312 41 EDGISMIKHAFSKGITFFDTADVYGQN---------ANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVR 111 (255)
Q Consensus 41 ~~~~~~l~~a~~~Gi~~~DtA~~Yg~g---------~se~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~ 111 (255)
....+.+++|.+.|+..+ .+++.... .-+..+- .+++.+..++.+---++ ..++ -.
T Consensus 16 ~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~~-~i~~~~~~~I~~GiE~~------------~~~~-~~ 80 (255)
T PRK05588 16 MKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYFN-KYSKYRNNKLLLGIELG------------MEKD-LI 80 (255)
T ss_pred cCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHHH-HHHHHhcCCcceEEEec------------ccCC-CH
Confidence 346899999999999988 77663210 0111221 11211112333333332 1122 24
Q ss_pred HHHHHHHhHcCCCcceEEecccCC
Q 025312 112 SCCEASLKRLDVDYIDLYYQHRVD 135 (255)
Q Consensus 112 ~~~~~sL~~L~~d~iDl~~lH~~~ 135 (255)
..+++.|++...||+ +.-+|+.+
T Consensus 81 ~~~~~~l~~~~~D~v-igSvH~~~ 103 (255)
T PRK05588 81 EENKELINKYEFDYV-IGSIHLVD 103 (255)
T ss_pred HHHHHHHhhCCCCeE-EEeEEeeC
Confidence 556778887887777 78889854
No 119
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=39.20 E-value=1.4e+02 Score=21.38 Aligned_cols=63 Identities=17% Similarity=0.168 Sum_probs=43.0
Q ss_pred CCCceEEEecccccccCccccccCCCHHHHHHHHHHHHhHcCC---CcceEEecccCCCC-CCHHHHHHHHHHHHHh
Q 025312 81 PREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDV---DYIDLYYQHRVDTS-VPIEETIGEMKKLVEE 153 (255)
Q Consensus 81 ~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~---d~iDl~~lH~~~~~-~~~~~~~~~l~~l~~~ 153 (255)
+|=-+.|+-|++.. ..+..|++.+.+..+.+.. ...|++++-.+... .++.++.+.|..|.++
T Consensus 38 ~R~GisVsKKvgkA----------V~RNriKR~lRE~~R~~~~~~~~~~d~v~i~r~~~~~~~~~~l~~~l~~ll~k 104 (114)
T PRK00499 38 FRVGISVSKKVGNA----------VVRNRIKRLIRESFRELKDEIKKGYDFVVIARKPAAELDYKEIKKSLIHVLKL 104 (114)
T ss_pred cEEEEEEecccCch----------hhHhHHHHHHHHHHHHhhhcccCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 45557777777542 4666777777777766532 35799999887643 5677777777777665
No 120
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=39.11 E-value=37 Score=24.58 Aligned_cols=27 Identities=11% Similarity=0.228 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHHHcCCCceecccccC
Q 025312 39 SEEDGISMIKHAFSKGITFFDTADVYG 65 (255)
Q Consensus 39 ~~~~~~~~l~~a~~~Gi~~~DtA~~Yg 65 (255)
+.+.+.+....+++.|+++||.+..|.
T Consensus 75 ~~~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 75 PHGASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp CHHHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred chhHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 567788999999999999999999885
No 121
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=38.43 E-value=4e+02 Score=26.25 Aligned_cols=94 Identities=12% Similarity=0.075 Sum_probs=51.2
Q ss_pred CCceEEEecccccccCccccccCCCHHHHHHHHHHHHhHcCCCcceEEecccCCCC----CCHHH--HHHHHHHHHHhCC
Q 025312 82 REKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS----VPIEE--TIGEMKKLVEEGK 155 (255)
Q Consensus 82 R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~----~~~~~--~~~~l~~l~~~G~ 155 (255)
.+++.|..|+....... ...+.+... .+-+.|+..|+|+||+ |..... ..... .....+++|+.=+
T Consensus 616 ~~~~~v~~ri~~~~~~~----~g~~~~~~~-~~~~~l~~~g~d~i~v---s~g~~~~~~~~~~~~~~~~~~~~~ik~~~~ 687 (765)
T PRK08255 616 PAEKPMSVRISAHDWVE----GGNTPDDAV-EIARAFKAAGADLIDV---SSGQVSKDEKPVYGRMYQTPFADRIRNEAG 687 (765)
T ss_pred CCCCeeEEEEccccccC----CCCCHHHHH-HHHHHHHhcCCcEEEe---CCCCCCcCCCCCcCccccHHHHHHHHHHcC
Confidence 45788999987532111 123444443 3444577888777665 422110 00000 1122345555545
Q ss_pred cceEEcCCC-CHHHHHHHhhcCCceEeec
Q 025312 156 IKYIGLSEA-SPGTIRRAHAVHPITAVQM 183 (255)
Q Consensus 156 vr~iGvsn~-~~~~l~~~~~~~~~~~~q~ 183 (255)
+--+++.+. +++..+++++....|.+.+
T Consensus 688 ~pv~~~G~i~~~~~a~~~l~~g~~D~v~~ 716 (765)
T PRK08255 688 IATIAVGAISEADHVNSIIAAGRADLCAL 716 (765)
T ss_pred CEEEEeCCCCCHHHHHHHHHcCCcceeeE
Confidence 666777776 7788888888766665544
No 122
>PF14502 HTH_41: Helix-turn-helix domain
Probab=38.39 E-value=38 Score=20.49 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=24.8
Q ss_pred HHHHHHHHHHcCCC--HHHHHHHHHHhCCCCe
Q 025312 214 YFRIGNLAKKYNCT--SAQLALAWVLGQGDDV 243 (255)
Q Consensus 214 ~~~l~~ia~~~~~s--~~q~al~~~l~~~~v~ 243 (255)
++.+.+++++++++ ..|-||+++-+.+.|.
T Consensus 6 i~tI~e~~~~~~vs~GtiQ~Alk~Le~~gaI~ 37 (48)
T PF14502_consen 6 IPTISEYSEKFGVSRGTIQNALKFLEENGAIK 37 (48)
T ss_pred cCCHHHHHHHhCcchhHHHHHHHHHHHCCcEE
Confidence 35678889999877 6899999999998754
No 123
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=38.04 E-value=2.7e+02 Score=24.09 Aligned_cols=129 Identities=15% Similarity=0.169 Sum_probs=71.2
Q ss_pred CCHHHHHHHHHHHHHcCCCceecccccCC-----CchHHHHHHHHhcCC-CCceEEEecccccccCccccccCCCHHHHH
Q 025312 38 VSEEDGISMIKHAFSKGITFFDTADVYGQ-----NANEVLLGKALKQLP-REKIQVATKFGIAGIGVAGVIVKGAPDYVR 111 (255)
Q Consensus 38 ~~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~-----g~se~~lg~~l~~~~-R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~ 111 (255)
.+.++..++++.+.+.|++.|.- .|. -.-.+++.. +++.+ -+++.|+|.. .. +.
T Consensus 43 ls~eei~~~i~~~~~~gv~~V~l---tGGEPll~~~l~~li~~-i~~~~gi~~v~itTNG-~l---------------l~ 102 (334)
T TIGR02666 43 LTFEEIERLVRAFVGLGVRKVRL---TGGEPLLRKDLVELVAR-LAALPGIEDIALTTNG-LL---------------LA 102 (334)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEE---ECccccccCCHHHHHHH-HHhcCCCCeEEEEeCc-hh---------------HH
Confidence 57889999999999999987763 231 011233332 22211 2256677742 11 11
Q ss_pred HHHHHHHhHcCCCcceEEecccCCC---------CCCHHHHHHHHHHHHHhCCc--c--eEEcCCCCHHHHHHHhhc---
Q 025312 112 SCCEASLKRLDVDYIDLYYQHRVDT---------SVPIEETIGEMKKLVEEGKI--K--YIGLSEASPGTIRRAHAV--- 175 (255)
Q Consensus 112 ~~~~~sL~~L~~d~iDl~~lH~~~~---------~~~~~~~~~~l~~l~~~G~v--r--~iGvsn~~~~~l~~~~~~--- 175 (255)
+ .-+.|.+.|++++- +-++.+++ ...+++++++++.+++.|.- + .+-+.+.+.+++.++++.
T Consensus 103 ~-~~~~L~~~gl~~v~-ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~~ei~~l~~~~~~ 180 (334)
T TIGR02666 103 R-HAKDLKEAGLKRVN-VSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMRGVNDDEIVDLAEFAKE 180 (334)
T ss_pred H-HHHHHHHcCCCeEE-EecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHh
Confidence 1 23446666766544 33454433 12578899999999999863 2 233344566666665443
Q ss_pred CCceEeeccCCcC
Q 025312 176 HPITAVQMEWSLW 188 (255)
Q Consensus 176 ~~~~~~q~~~n~~ 188 (255)
.++.+.-++|.++
T Consensus 181 ~gv~~~~ie~mp~ 193 (334)
T TIGR02666 181 RGVTLRFIELMPL 193 (334)
T ss_pred cCCeEEEEeccCC
Confidence 3444444444443
No 124
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=37.93 E-value=2.8e+02 Score=24.33 Aligned_cols=60 Identities=10% Similarity=-0.038 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHHhHcCCCcceEEeccc-CCCC--------CCHHH---HH-HHHHHHHHhCCcceEEcCCCCH
Q 025312 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHR-VDTS--------VPIEE---TI-GEMKKLVEEGKIKYIGLSEASP 166 (255)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH~-~~~~--------~~~~~---~~-~~l~~l~~~G~vr~iGvsn~~~ 166 (255)
-+.+.+.+.++... +|+.+++.++.+-- |... .+.++ .+ .+.+.|.+.|.. .+++|||..
T Consensus 164 qt~~~~~~~l~~~~-~l~~~~is~y~l~~~~gT~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~yei~~fa~ 236 (360)
T TIGR00539 164 QTLNSLKEELKLAK-ELPINHLSAYALSVEPNTNFEKNAKKLPDDDSCAHFDEVVREILEGFGFK-QYEVSNYAK 236 (360)
T ss_pred CCHHHHHHHHHHHH-ccCCCEEEeecceEcCCChhhhhhhcCcCHHHHHHHHHHHHHHHHHcCCc-eeehhhhcC
Confidence 46677777777655 47888877766542 1100 01111 22 233456666764 689999853
No 125
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=37.60 E-value=31 Score=31.64 Aligned_cols=47 Identities=23% Similarity=0.286 Sum_probs=34.2
Q ss_pred CCcccccc-eecccccCCCCCCCCCHHHHHHHHHHHHHcCCCc---eecccccCC
Q 025312 16 QGLEVSKL-GYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITF---FDTADVYGQ 66 (255)
Q Consensus 16 ~g~~vs~l-g~Gt~~~~~~~~~~~~~~~~~~~l~~a~~~Gi~~---~DtA~~Yg~ 66 (255)
...+.|.| ..|+.+-.. ..+.+++.++++.|...|||. |||..+-|+
T Consensus 228 e~~~~PeL~~kGaYs~~~----vYT~eDv~evV~yarlRGIRVlpEfD~PgHt~s 278 (542)
T KOG2499|consen 228 ESPTFPELHRKGAYSPRH----VYTREDVSEVVEYARLRGIRVLPEFDTPGHTGS 278 (542)
T ss_pred ccCCchhhhhcCCCCcce----eecHHHHHHHHHHHHhccceeeecccCCccccc
Confidence 34567777 677664322 248899999999999999996 588766554
No 126
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=37.18 E-value=2.8e+02 Score=24.08 Aligned_cols=121 Identities=12% Similarity=0.004 Sum_probs=61.3
Q ss_pred CCHHHHHHHHHHHHHcCCCceecccccCCCchHHHHHHHHhcCCCCceEEEecccccccCccccccCCCHHHH-------
Q 025312 38 VSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYV------- 110 (255)
Q Consensus 38 ~~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i------- 110 (255)
.+.+++.+.++.+.+.|++.|-......+......+-+.++...+...-+.-+. .++..+
T Consensus 72 ls~eei~~~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~li~~Ik~~~~~i~~~~-------------~s~~ei~~~~~~~ 138 (340)
T TIGR03699 72 LSVEEILQKIEELVAYGGTQILLQGGVNPDLGLDYYEDLFRAIKARFPHIHIHS-------------FSPVEIVYIAKKE 138 (340)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcCCCC-------------CCHHHHHHHhccC
Confidence 578889999999999999877654222211122223333332111100011110 122211
Q ss_pred ---HHHHHHHHhHcCCCcceEE--e------cccCCC-CCCHHHHHHHHHHHHHhCCcce----EEcCCCCHHHHHHH
Q 025312 111 ---RSCCEASLKRLDVDYIDLY--Y------QHRVDT-SVPIEETIGEMKKLVEEGKIKY----IGLSEASPGTIRRA 172 (255)
Q Consensus 111 ---~~~~~~sL~~L~~d~iDl~--~------lH~~~~-~~~~~~~~~~l~~l~~~G~vr~----iGvsn~~~~~l~~~ 172 (255)
....-+.|++.|+++++.. - .+...+ ....++.++.++.+++.|.--. +|. ..+.+++.+.
T Consensus 139 g~~~~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGl-gEt~ed~~~~ 215 (340)
T TIGR03699 139 GLSLREVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMFGH-VETLEDRIEH 215 (340)
T ss_pred CCCHHHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEeeC-CCCHHHHHHH
Confidence 1344456677788877521 0 111111 2356788999999999995332 343 4565554443
No 127
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=36.54 E-value=3e+02 Score=24.31 Aligned_cols=121 Identities=14% Similarity=0.216 Sum_probs=73.5
Q ss_pred CCCceEEEeccccccc------CccccccCCCHHHHHHHHHHHHhHcCCC---cc-eEEecccCCCCCCHHHHHHHHHHH
Q 025312 81 PREKIQVATKFGIAGI------GVAGVIVKGAPDYVRSCCEASLKRLDVD---YI-DLYYQHRVDTSVPIEETIGEMKKL 150 (255)
Q Consensus 81 ~R~~~~i~tK~~~~~~------~~~~~~~~~~~~~i~~~~~~sL~~L~~d---~i-Dl~~lH~~~~~~~~~~~~~~l~~l 150 (255)
.|..+.|+|-+|=.-. +..++..+.+...|..|+....++++.. .+ .++++---+|...++.+..+++-+
T Consensus 99 ~r~tlCVSsQvGC~~~C~FCaTg~~G~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MGMGEPl~N~dnV~~a~~i~ 178 (349)
T COG0820 99 DRNTLCVSSQVGCPVGCTFCATGQGGLNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMGMGEPLLNLDNVVKALEII 178 (349)
T ss_pred CCceEEEecCCCcCCCCCeeccccccceeccCHHHHHHHHHHHHHhcCccccceeeeEEEecCCchhhhHHHHHHHHHhh
Confidence 4555677777653221 2235678999999999999999999864 22 233333223444567788888877
Q ss_pred HH-hCC---cceEEcCCCC-HHHHHHHhhcCCceEeeccCCcCCcChhhchhhhcc
Q 025312 151 VE-EGK---IKYIGLSEAS-PGTIRRAHAVHPITAVQMEWSLWTRDIEEEIIPLCR 201 (255)
Q Consensus 151 ~~-~G~---vr~iGvsn~~-~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~ 201 (255)
.. .|. -|+|=||+.. ...|.++.+...-...++..|.-+....+.++|..+
T Consensus 179 ~~~~G~~ls~R~iTvSTsGi~~~I~~l~~~~~~v~LAiSLHa~nd~lR~~L~Pink 234 (349)
T COG0820 179 NDDEGLGLSKRRITVSTSGIVPRIRKLADEQLGVALAISLHAPNDELRDQLMPINK 234 (349)
T ss_pred cCcccccccceEEEEecCCCchhHHHHHhhcCCeEEEEecCCCCHHHHhhhhcccc
Confidence 73 332 2778888876 456777664322244566666555433344444444
No 128
>TIGR00035 asp_race aspartate racemase.
Probab=36.50 E-value=2e+02 Score=23.44 Aligned_cols=63 Identities=14% Similarity=0.102 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHHHHhHcCCCcceEEecccCCCCC------------CHHHHHHHHHHHHHhCCcceEEcCCCCHHH
Q 025312 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSV------------PIEETIGEMKKLVEEGKIKYIGLSEASPGT 168 (255)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~------------~~~~~~~~l~~l~~~G~vr~iGvsn~~~~~ 168 (255)
.+.+.+++=++..-.+.+.++++.+.+++|+-.. ....+.+.++.|.+.| +..|-++-.+...
T Consensus 14 at~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g-~d~iviaCNTah~ 88 (229)
T TIGR00035 14 ATAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAG-ADFIIMPCNTAHK 88 (229)
T ss_pred HHHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcC-CCEEEECCccHHH
Confidence 4566677777777778889999999999985321 1234566777776655 6888887776654
No 129
>PRK00208 thiG thiazole synthase; Reviewed
Probab=36.03 E-value=2.6e+02 Score=23.42 Aligned_cols=76 Identities=18% Similarity=0.145 Sum_probs=56.8
Q ss_pred CCCHHHHHHHHHHHHhHcCCCcceEEecccCCCC-CCHHHHHHHHHHHHHhCCcceEEcCCCCHHHHHHHhhcCCceEe
Q 025312 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS-VPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAV 181 (255)
Q Consensus 104 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~-~~~~~~~~~l~~l~~~G~vr~iGvsn~~~~~l~~~~~~~~~~~~ 181 (255)
..+.+.-.+-.+-..+-++++.|=|=.+..+... .+..+++++.++|.++|.+- +=+|+-++...+++.+. .++++
T Consensus 72 ~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~v-lpyc~~d~~~ak~l~~~-G~~~v 148 (250)
T PRK00208 72 CRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVV-LPYCTDDPVLAKRLEEA-GCAAV 148 (250)
T ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHc-CCCEe
Confidence 3567777777777778889988887777665543 46789999999999999873 66788888877777665 44544
No 130
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=35.88 E-value=2.6e+02 Score=23.27 Aligned_cols=40 Identities=10% Similarity=0.102 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHHHHHcCCCceecccccCCCchH-HHHHHHHh
Q 025312 38 VSEEDGISMIKHAFSKGITFFDTADVYGQNANE-VLLGKALK 78 (255)
Q Consensus 38 ~~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~g~se-~~lg~~l~ 78 (255)
.+.++..++++...++|+..|++....- +..+ +.+.+..+
T Consensus 17 ~~~~~k~~i~~~L~~~Gv~~iE~g~p~~-~~~~~e~~~~l~~ 57 (259)
T cd07939 17 FSREEKLAIARALDEAGVDEIEVGIPAM-GEEEREAIRAIVA 57 (259)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCC-CHHHHHHHHHHHh
Confidence 4778899999999999999999863221 2244 45544433
No 131
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=35.72 E-value=1e+02 Score=20.85 Aligned_cols=27 Identities=19% Similarity=0.143 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHHcCCCHHHHHHHH
Q 025312 209 RNKSIYFRIGNLAKKYNCTSAQLALAW 235 (255)
Q Consensus 209 ~~~~~~~~l~~ia~~~~~s~~q~al~~ 235 (255)
+....+.+|.++|++.+++.+++|.-.
T Consensus 49 ~V~~sl~kL~~La~~N~v~feeLc~YA 75 (82)
T PF11020_consen 49 KVMDSLSKLYKLAKENNVSFEELCVYA 75 (82)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 345567889999999999999988644
No 132
>PRK01903 rnpA ribonuclease P; Reviewed
Probab=35.36 E-value=1.9e+02 Score=21.60 Aligned_cols=48 Identities=15% Similarity=0.144 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHHHhH----cCC----------CcceEEecccC--CCCCCHHHHHHHHHHHHH
Q 025312 105 GAPDYVRSCCEASLKR----LDV----------DYIDLYYQHRV--DTSVPIEETIGEMKKLVE 152 (255)
Q Consensus 105 ~~~~~i~~~~~~sL~~----L~~----------d~iDl~~lH~~--~~~~~~~~~~~~l~~l~~ 152 (255)
..+..|++.+.++.+. |.. .++|++++..+ ....+++++-+.|+.|.+
T Consensus 65 V~RNRiKR~lREa~R~~~~~l~~~~~~~~~~~~~~~~iv~i~~~~~~~~~~~~~l~~~l~~ll~ 128 (133)
T PRK01903 65 VKRNRIKRLMREAYRLEKHVLLDRLETDAGAKNRQLAIAFLYTGRSDEIPSLAEFRREMRKLLQ 128 (133)
T ss_pred hhhhHHHHHHHHHHHHhHhhhcccccccccccCcceEEEEEEeccccccCCHHHHHHHHHHHHH
Confidence 3455666666665554 433 24799999887 333456777666666654
No 133
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=35.31 E-value=3.1e+02 Score=24.12 Aligned_cols=119 Identities=11% Similarity=-0.003 Sum_probs=73.2
Q ss_pred CCceEEEecccccc------cCccccccCCCHHHHHHHHHHHHhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHHh-C
Q 025312 82 REKIQVATKFGIAG------IGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEE-G 154 (255)
Q Consensus 82 R~~~~i~tK~~~~~------~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~-G 154 (255)
|..+.|+|-+|=.. .+..+...+.+...|..++-..-+.++....-++++--=.|...++.+.++++.+++. |
T Consensus 104 ~~t~CvSsQvGC~m~C~FC~tg~~g~~rnlta~EI~~qv~~~~~~~~~~~~niVFmGmGEPL~N~d~V~~~~~~l~~~~~ 183 (342)
T PRK14465 104 RKTICISSQIGCTLNCKFCATAKLEFQGNLKAHEIVDQVLQVEKIVGDRATNVVFMGMGEPMHNYFNVIRAASILHDPDA 183 (342)
T ss_pred ceEEEEEecCCCCCCCCCCcCCCCCccCCCCHHHHHHHHHHHHHhcCCCceEEEEEcCCcchhhHHHHHHHHHHHhChhh
Confidence 34577777654211 1223455678999999998776666665555555555445555667889999988775 2
Q ss_pred ---CcceEEcCCCCH-HHHHHHhhcCCceEeeccCCcCCcChhhchhhhc
Q 025312 155 ---KIKYIGLSEASP-GTIRRAHAVHPITAVQMEWSLWTRDIEEEIIPLC 200 (255)
Q Consensus 155 ---~vr~iGvsn~~~-~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~ 200 (255)
.-++|-||+... ..+.++.+......+.+..|.-+.+....++|.+
T Consensus 184 ~~~~~r~itvST~G~~~~i~~l~~~~~~~~LaiSLhA~~~e~R~~l~Pi~ 233 (342)
T PRK14465 184 FNLGAKRITISTSGVVNGIRRFIENKEPYNFAISLNHPDPNGRLQIMDIE 233 (342)
T ss_pred hcCCCCeEEEeCCCchHHHHHHHhhccCceEEEEecCCChhhcceEeecc
Confidence 456888888854 5666666433333456666655544334455544
No 134
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=35.06 E-value=1e+02 Score=29.02 Aligned_cols=57 Identities=23% Similarity=0.228 Sum_probs=40.2
Q ss_pred CchHHHHHHHHhc-CCCCceEEEecccccccCccccccCCCHHHHHHHHHHHHhHc-CCCcceEEecccCCCCCC
Q 025312 67 NANEVLLGKALKQ-LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRL-DVDYIDLYYQHRVDTSVP 139 (255)
Q Consensus 67 g~se~~lg~~l~~-~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L-~~d~iDl~~lH~~~~~~~ 139 (255)
|.+-+-++++|-. .+|+++.|.--- +.+ ++-+..||+|| |+.|+.=+.+-|-.+..+
T Consensus 632 gGsGkEF~~aLGGN~pREQFTvVmLT-------------YER---e~VLm~sLeRL~gLPYLnKvvVVWNspk~P 690 (907)
T KOG2264|consen 632 GGSGKEFSKALGGNRPREQFTVVMLT-------------YER---EAVLMGSLERLHGLPYLNKVVVVWNSPKDP 690 (907)
T ss_pred CCchHHHHHHhcCCCccceEEEEEEE-------------ehH---HHHHHHHHHHhhCCcccceEEEEeCCCCCC
Confidence 4578888888875 589998776532 233 33467899999 789998888877655443
No 135
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=35.02 E-value=22 Score=23.16 Aligned_cols=40 Identities=23% Similarity=0.204 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHHHcCCCceecccccCCCchHHHHHHHHhc
Q 025312 38 VSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ 79 (255)
Q Consensus 38 ~~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~ 79 (255)
.+++.-..+|..++..|.+.-+.|..||- +...|..|++.
T Consensus 7 ys~e~K~~~v~~~~~~g~sv~~va~~~gi--~~~~l~~W~~~ 46 (76)
T PF01527_consen 7 YSPEFKLQAVREYLESGESVSEVAREYGI--SPSTLYNWRKQ 46 (76)
T ss_dssp --HHHHHHHHHHHHHHHCHHHHHHHHHTS---HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCceEeeeccccc--ccccccHHHHH
Confidence 37788889999999999999999999998 99999999986
No 136
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=34.94 E-value=2.7e+02 Score=23.29 Aligned_cols=76 Identities=20% Similarity=0.138 Sum_probs=57.0
Q ss_pred CCCHHHHHHHHHHHHhHcCCCcceEEecccCCCC-CCHHHHHHHHHHHHHhCCcceEEcCCCCHHHHHHHhhcCCceEe
Q 025312 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS-VPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAV 181 (255)
Q Consensus 104 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~-~~~~~~~~~l~~l~~~G~vr~iGvsn~~~~~l~~~~~~~~~~~~ 181 (255)
.++.+.-.+-.+-..+-++++.|=|=.+..+... .+..+++++.++|.++|.+- +=+++-++...+++.+. .++++
T Consensus 72 ~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~v-lpyc~dd~~~ar~l~~~-G~~~v 148 (248)
T cd04728 72 CRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTV-LPYCTDDPVLAKRLEDA-GCAAV 148 (248)
T ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHc-CCCEe
Confidence 3567776677777778889998888777766543 46789999999999999873 66788888877777665 44544
No 137
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=34.79 E-value=3.1e+02 Score=23.83 Aligned_cols=133 Identities=13% Similarity=0.091 Sum_probs=76.4
Q ss_pred CHHHHHHHHHHHHHcCCCcee----------cccccCCC--chHHHHHHHHhcCC-CCceEEEecccccccCccccccCC
Q 025312 39 SEEDGISMIKHAFSKGITFFD----------TADVYGQN--ANEVLLGKALKQLP-REKIQVATKFGIAGIGVAGVIVKG 105 (255)
Q Consensus 39 ~~~~~~~~l~~a~~~Gi~~~D----------tA~~Yg~g--~se~~lg~~l~~~~-R~~~~i~tK~~~~~~~~~~~~~~~ 105 (255)
++++..+....+.+.|+..|| +...||.. ..-+.+.+.+++.. .-++-|+.|+-..+.. ..
T Consensus 65 ~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~------~~ 138 (318)
T TIGR00742 65 DPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDP------LD 138 (318)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCC------cc
Confidence 677777888888889999999 33344541 23344555555421 1245688887432211 11
Q ss_pred CHHHHHHHHHHHHhHcCCCcceEEecccCCC-CCC--------H-HHHHHHHHHHHHhC-CcceEEcCCC-CHHHHHHHh
Q 025312 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDT-SVP--------I-EETIGEMKKLVEEG-KIKYIGLSEA-SPGTIRRAH 173 (255)
Q Consensus 106 ~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~-~~~--------~-~~~~~~l~~l~~~G-~vr~iGvsn~-~~~~l~~~~ 173 (255)
+.+.. ..+-+.++..| +|.+-+|.-.. ... . .--|+...++++.- .|--||..+- +.+++.+.+
T Consensus 139 ~~~~~-~~~~~~l~~~G---~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l 214 (318)
T TIGR00742 139 SYEFL-CDFVEIVSGKG---CQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHL 214 (318)
T ss_pred hHHHH-HHHHHHHHHcC---CCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHH
Confidence 22222 23444556666 67778896532 000 0 01477777888765 6777777655 667777776
Q ss_pred hcCCceEeec
Q 025312 174 AVHPITAVQM 183 (255)
Q Consensus 174 ~~~~~~~~q~ 183 (255)
. ..+.+|+
T Consensus 215 ~--g~dgVMi 222 (318)
T TIGR00742 215 S--HVDGVMV 222 (318)
T ss_pred h--CCCEEEE
Confidence 4 3566665
No 138
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=34.50 E-value=66 Score=27.63 Aligned_cols=49 Identities=18% Similarity=0.186 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhHcCCCcc--eEEecccCCCCCCHHHHHHHHHHHHHhCCcce
Q 025312 107 PDYVRSCCEASLKRLDVDYI--DLYYQHRVDTSVPIEETIGEMKKLVEEGKIKY 158 (255)
Q Consensus 107 ~~~i~~~~~~sL~~L~~d~i--Dl~~lH~~~~~~~~~~~~~~l~~l~~~G~vr~ 158 (255)
.+...+.+.+.+++||+++- ..+.=+.+ ...+.+++.+++|+++|.|-.
T Consensus 81 ~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~---~~~~~v~~~f~~L~~~G~iY~ 131 (312)
T cd00668 81 VEEMSGEHKEDFRRLGISYDWSDEYITTEP---EYSKAVELIFSRLYEKGLIYR 131 (312)
T ss_pred HHHHHHHHHHHHHHhCccccCCCCeECCCH---HHHHHHHHHHHHHHHCCCEEe
Confidence 34677888999999998642 22222222 234678999999999999754
No 139
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=34.39 E-value=1.2e+02 Score=20.68 Aligned_cols=59 Identities=10% Similarity=0.001 Sum_probs=35.8
Q ss_pred CcceEEecccCCCCCCHHHHHHHHHHHHHhC-CcceEEcCCC-CHHHHHHHhhcCCceEeeccC
Q 025312 124 DYIDLYYQHRVDTSVPIEETIGEMKKLVEEG-KIKYIGLSEA-SPGTIRRAHAVHPITAVQMEW 185 (255)
Q Consensus 124 d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G-~vr~iGvsn~-~~~~l~~~~~~~~~~~~q~~~ 185 (255)
..+|++++....+.....++++ .+++.+ .++-|-+++. +.....++.+..-.+++.-++
T Consensus 42 ~~~d~iiid~~~~~~~~~~~~~---~i~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~ 102 (112)
T PF00072_consen 42 HPPDLIIIDLELPDGDGLELLE---QIRQINPSIPIIVVTDEDDSDEVQEALRAGADDYLSKPF 102 (112)
T ss_dssp STESEEEEESSSSSSBHHHHHH---HHHHHTTTSEEEEEESSTSHHHHHHHHHTTESEEEESSS
T ss_pred cCceEEEEEeeecccccccccc---ccccccccccEEEecCCCCHHHHHHHHHCCCCEEEECCC
Confidence 3499999986655554444555 445555 7788888866 456666666554444443333
No 140
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=34.00 E-value=3.2e+02 Score=23.87 Aligned_cols=24 Identities=8% Similarity=0.073 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHHHcCCCceecc
Q 025312 38 VSEEDGISMIKHAFSKGITFFDTA 61 (255)
Q Consensus 38 ~~~~~~~~~l~~a~~~Gi~~~DtA 61 (255)
++.++..+++...-++|+..|+..
T Consensus 21 f~~~~~~~ia~~Ld~aGV~~IEvg 44 (333)
T TIGR03217 21 FTIEQVRAIAAALDEAGVDAIEVT 44 (333)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe
Confidence 478999999999999999999984
No 141
>PRK05406 LamB/YcsF family protein; Provisional
Probab=33.93 E-value=1.8e+02 Score=24.29 Aligned_cols=81 Identities=10% Similarity=0.242 Sum_probs=48.5
Q ss_pred eecccccCCCCCCCCCHHHHHHHHHHH-HHcCCCceecccccCCCchHHHHHHHHhcCCCCceEEEecccccccCc-ccc
Q 025312 24 GYGCMNLSGGYSSPVSEEDGISMIKHA-FSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGV-AGV 101 (255)
Q Consensus 24 g~Gt~~~~~~~~~~~~~~~~~~~l~~a-~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~R~~~~i~tK~~~~~~~~-~~~ 101 (255)
+||.|.+| ++++.-.+++.| +..|+ +.| ....+-+.++--....+-|-...++....+ ++-
T Consensus 13 ~fG~w~~g-------~D~~lmp~IssANIACG~-------HAG---Dp~~M~~tv~lA~~~gV~IGAHPgypD~~gFGRR 75 (246)
T PRK05406 13 SFGAWKMG-------DDEALLPLVTSANIACGF-------HAG---DPAVMRRTVRLAKENGVAIGAHPGYPDLEGFGRR 75 (246)
T ss_pred CCCCCCCC-------CHHHHHHHhhhHHHhccc-------cCC---CHHHHHHHHHHHHHcCCeEccCCCCCccCCCCCC
Confidence 67888765 456677777766 34443 445 355566665543445666666655432222 223
Q ss_pred ccCCCHHHHHHHHHHHHhHc
Q 025312 102 IVKGAPDYVRSCCEASLKRL 121 (255)
Q Consensus 102 ~~~~~~~~i~~~~~~sL~~L 121 (255)
..+.+++.++..+...+..|
T Consensus 76 ~m~~s~~el~~~v~yQigAL 95 (246)
T PRK05406 76 NMDLSPEELYALVLYQIGAL 95 (246)
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 45689999988877766666
No 142
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=33.56 E-value=2.8e+02 Score=23.11 Aligned_cols=56 Identities=13% Similarity=0.174 Sum_probs=41.7
Q ss_pred HHHHhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHHhCCcceEEcCCCCHHHHHHHh
Q 025312 115 EASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAH 173 (255)
Q Consensus 115 ~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn~~~~~l~~~~ 173 (255)
.+.+...+...=|+++.-..+... .+++++++.+++.| +.-|++++.....+.+..
T Consensus 108 ~~~l~a~~l~~~DvvI~IS~SG~T--~~vi~al~~Ak~~G-a~~I~It~~~~s~L~~~a 163 (257)
T cd05007 108 AADLQAINLTERDVVIGIAASGRT--PYVLGALRYARARG-ALTIGIACNPGSPLLQLA 163 (257)
T ss_pred HHHHHHcCCCCCCEEEEEeCCCCC--HHHHHHHHHHHHCC-CeEEEEECCCCChhHHhC
Confidence 334455666677988877666554 46999999999998 778999998777776653
No 143
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=33.14 E-value=3.3e+02 Score=23.77 Aligned_cols=114 Identities=18% Similarity=0.205 Sum_probs=72.0
Q ss_pred CCHHHHHHHHHHHHHcCCCceecccccCCCchHHHHHHHHhc----CC---CCceEEEecccccccCccccccCCCHHHH
Q 025312 38 VSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ----LP---REKIQVATKFGIAGIGVAGVIVKGAPDYV 110 (255)
Q Consensus 38 ~~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~----~~---R~~~~i~tK~~~~~~~~~~~~~~~~~~~i 110 (255)
.+.++...+++.+.+.|++=+=- -| .|..+.+-|.+ .. -.++-++|.. ..
T Consensus 43 Ls~eei~~~~~~~~~~Gv~kvRl---TG---GEPllR~dl~eIi~~l~~~~~~~islTTNG-----------------~~ 99 (322)
T COG2896 43 LSLEEIRRLVRAFAELGVEKVRL---TG---GEPLLRKDLDEIIARLARLGIRDLSLTTNG-----------------VL 99 (322)
T ss_pred CCHHHHHHHHHHHHHcCcceEEE---eC---CCchhhcCHHHHHHHHhhcccceEEEecch-----------------hh
Confidence 47899999999999999997753 23 35665555543 12 2456666653 23
Q ss_pred HHHHHHHHhHcCCCcceEEecccCCCC--------CCHHHHHHHHHHHHHhCCc----ceEEcCCCCHHHHHHHhhc
Q 025312 111 RSCCEASLKRLDVDYIDLYYQHRVDTS--------VPIEETIGEMKKLVEEGKI----KYIGLSEASPGTIRRAHAV 175 (255)
Q Consensus 111 ~~~~~~sL~~L~~d~iDl~~lH~~~~~--------~~~~~~~~~l~~l~~~G~v----r~iGvsn~~~~~l~~~~~~ 175 (255)
......-|+.-|++.|. +.||..|++ ..++.+++.+++..+.|.- -.+=+-+.+-.++..+++.
T Consensus 100 L~~~a~~Lk~AGl~rVN-VSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kgvNd~ei~~l~e~ 175 (322)
T COG2896 100 LARRAADLKEAGLDRVN-VSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKGVNDDEIEDLLEF 175 (322)
T ss_pred HHHHHHHHHHcCCcEEE-eecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEEecCCCHHHHHHHHHH
Confidence 44455566777776665 344555443 2367888999999988873 3444455566666655554
No 144
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=32.76 E-value=29 Score=34.67 Aligned_cols=84 Identities=14% Similarity=0.183 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhHcCCCcceEEecccCCCCCCHHHHHH-HHHHHHHhCCcceEEcCCCC--HHHHHHHhhc---------
Q 025312 108 DYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIG-EMKKLVEEGKIKYIGLSEAS--PGTIRRAHAV--------- 175 (255)
Q Consensus 108 ~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~-~l~~l~~~G~vr~iGvsn~~--~~~l~~~~~~--------- 175 (255)
..=++++....+.++-.++|||-|-.|+++..+..+++ ++++.-.+=..++|-||+.- .+.++.+.+.
T Consensus 7 ~~eRe~la~iiqqWNaNRLDLF~lS~PtEdLefhGVMRFYFQDag~kvaTKCiRVsStATt~dVidtL~EKFrPDmrMLS 86 (1629)
T KOG1892|consen 7 DEEREKLADIIQQWNANRLDLFELSQPTEDLEFHGVMRFYFQDAGGKVATKCIRVSSTATTQDVIDTLAEKFRPDMRMLS 86 (1629)
T ss_pred hhHHHHHHHHHHHhcccccceeeccCCCccceeeeeEEEEeecccchhhhheeEecccccHHHHHHHHHHHhCcchhhhc
Confidence 34577788888899999999999999987655444432 23332222234566666542 2334333332
Q ss_pred --------------------CCceEeeccCCcCCcC
Q 025312 176 --------------------HPITAVQMEWSLWTRD 191 (255)
Q Consensus 176 --------------------~~~~~~q~~~n~~~~~ 191 (255)
.+|-++|+.||.-+++
T Consensus 87 ~p~YsLyEVH~nGERrL~~dEKPLvVQLnWhkDDRE 122 (1629)
T KOG1892|consen 87 SPKYSLYEVHVNGERRLDIDEKPLVVQLNWHKDDRE 122 (1629)
T ss_pred CCCceeeeeecCcccccCcccCceEEEecccccccc
Confidence 5678899999987774
No 145
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=32.67 E-value=3.5e+02 Score=23.94 Aligned_cols=98 Identities=11% Similarity=0.013 Sum_probs=48.1
Q ss_pred CCceEEEecccccccCccccccCCCHHHHHHHHHHHHhHcCCCcceEEec--ccCCCCCCHHHHHHHHHHHHHhCCcceE
Q 025312 82 REKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQ--HRVDTSVPIEETIGEMKKLVEEGKIKYI 159 (255)
Q Consensus 82 R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~l--H~~~~~~~~~~~~~~l~~l~~~G~vr~i 159 (255)
.+++.|..|+......+.......+.+...+- -+.|++.|+|+|++-.- +.|..... -+......++.-.+.-+
T Consensus 209 G~d~~v~vRis~~~~~~~~~~~g~~~~e~~~~-~~~l~~~gvd~i~vs~g~~~~~~~~~~---~~~~~~~~k~~~~~pv~ 284 (361)
T cd04747 209 GPDFPIILRFSQWKQQDYTARLADTPDELEAL-LAPLVDAGVDIFHCSTRRFWEPEFEGS---ELNLAGWTKKLTGLPTI 284 (361)
T ss_pred CCCCeEEEEECcccccccccCCCCCHHHHHHH-HHHHHHcCCCEEEecCCCccCCCcCcc---chhHHHHHHHHcCCCEE
Confidence 45677888886421111000112455544333 33467788888776331 11211110 12222334444344455
Q ss_pred EcCC-------------------CCHHHHHHHhhcCCceEeec
Q 025312 160 GLSE-------------------ASPGTIRRAHAVHPITAVQM 183 (255)
Q Consensus 160 Gvsn-------------------~~~~~l~~~~~~~~~~~~q~ 183 (255)
++.+ .+++.++++++....|.+.+
T Consensus 285 ~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~ 327 (361)
T cd04747 285 TVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAV 327 (361)
T ss_pred EECCcccccccccccccccccccCCHHHHHHHHHCCCCCeehh
Confidence 5544 47888888887766665433
No 146
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=32.58 E-value=3.3e+02 Score=23.60 Aligned_cols=95 Identities=15% Similarity=0.104 Sum_probs=54.8
Q ss_pred CCCceEEEecccccccCccccccCCCHHHHHHHHHHHHhHcCCCcceEEecccCCC--C--CCH--HHHHHHHHHHHHhC
Q 025312 81 PREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDT--S--VPI--EETIGEMKKLVEEG 154 (255)
Q Consensus 81 ~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~--~--~~~--~~~~~~l~~l~~~G 154 (255)
..+++.|..|+....... ...+.+... .+-+.|+..|+|++++ |.... . ... ...++.++++++.=
T Consensus 218 vG~d~~v~vri~~~~~~~----~g~~~~e~~-~ia~~Le~~gvd~iev---~~g~~~~~~~~~~~~~~~~~~~~~ir~~~ 289 (336)
T cd02932 218 WPEDKPLFVRISATDWVE----GGWDLEDSV-ELAKALKELGVDLIDV---SSGGNSPAQKIPVGPGYQVPFAERIRQEA 289 (336)
T ss_pred cCCCceEEEEEcccccCC----CCCCHHHHH-HHHHHHHHcCCCEEEE---CCCCCCcccccCCCccccHHHHHHHHhhC
Confidence 345678888986432111 113444333 3334567778776664 32110 0 011 11245666777776
Q ss_pred CcceEEcCCC-CHHHHHHHhhcCCceEeec
Q 025312 155 KIKYIGLSEA-SPGTIRRAHAVHPITAVQM 183 (255)
Q Consensus 155 ~vr~iGvsn~-~~~~l~~~~~~~~~~~~q~ 183 (255)
.+--++..+. +++..+++++....|.+++
T Consensus 290 ~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~ 319 (336)
T cd02932 290 GIPVIAVGLITDPEQAEAILESGRADLVAL 319 (336)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCCCeehh
Confidence 7777888877 7888999988776776665
No 147
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=32.54 E-value=1.8e+02 Score=23.97 Aligned_cols=41 Identities=15% Similarity=0.139 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHHHHcCCCceecccccCCCc---hHHHHHHHHh
Q 025312 38 VSEEDGISMIKHAFSKGITFFDTADVYGQNA---NEVLLGKALK 78 (255)
Q Consensus 38 ~~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~g~---se~~lg~~l~ 78 (255)
.+.++..++++.|.+.|++-+=..++|-.|+ +++.+.+.+.
T Consensus 17 ~s~eesl~ml~~A~~qGvt~iVaTsHh~~g~y~n~~~~v~~~~~ 60 (254)
T COG4464 17 KSLEESLAMLREAVRQGVTKIVATSHHLHGRYENPIEKVKEKAN 60 (254)
T ss_pred CcHHHHHHHHHHHHHcCceEEeecccccCCccCChHHHHHHHHH
Confidence 3789999999999999999665444443332 3444444443
No 148
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=32.50 E-value=3.5e+02 Score=23.77 Aligned_cols=93 Identities=12% Similarity=0.114 Sum_probs=49.4
Q ss_pred CceEEEecccccccCccccccCCCHHHHHHHHHHHHhHcCCCcceEEecc--cCCCC--CCHHHHHHHHHHHHHhCCcce
Q 025312 83 EKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQH--RVDTS--VPIEETIGEMKKLVEEGKIKY 158 (255)
Q Consensus 83 ~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH--~~~~~--~~~~~~~~~l~~l~~~G~vr~ 158 (255)
.++.|..|++..... ....+.+.. ..+-+.|+..|+|||++-.-. ..... ....+.++.+.+.++ +.+--
T Consensus 214 ~~~~v~~R~s~~~~~----~~g~~~ee~-~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~-~~iPV 287 (353)
T cd04735 214 KDFILGYRFSPEEPE----EPGIRMEDT-LALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIA-GRLPL 287 (353)
T ss_pred CCceEEEEECccccc----CCCCCHHHH-HHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhC-CCCCE
Confidence 578888888653211 112344443 244456677787777652210 00000 111233444444433 45667
Q ss_pred EEcCCC-CHHHHHHHhhcCCceEee
Q 025312 159 IGLSEA-SPGTIRRAHAVHPITAVQ 182 (255)
Q Consensus 159 iGvsn~-~~~~l~~~~~~~~~~~~q 182 (255)
|++... +++.++++++. ..+.+.
T Consensus 288 i~~Ggi~t~e~ae~~l~~-gaD~V~ 311 (353)
T cd04735 288 IAVGSINTPDDALEALET-GADLVA 311 (353)
T ss_pred EEECCCCCHHHHHHHHHc-CCChHH
Confidence 888776 78888888876 345443
No 149
>PRK15108 biotin synthase; Provisional
Probab=32.49 E-value=3.5e+02 Score=23.76 Aligned_cols=105 Identities=13% Similarity=0.185 Sum_probs=56.6
Q ss_pred CCHHHHHHHHHHHHHcCCCceeccccc-CC-CchHHHHHHHHhcCCCCceEEEecccccccCccccccCCCHHHHHHHHH
Q 025312 38 VSEEDGISMIKHAFSKGITFFDTADVY-GQ-NANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCE 115 (255)
Q Consensus 38 ~~~~~~~~~l~~a~~~Gi~~~DtA~~Y-g~-g~se~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (255)
.+.+++.+....+.+.|++-|-....+ ++ ...-+.+.+.++..+...+.++.-.|. .+.+.+.
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~~~i~v~~s~G~-----------ls~e~l~---- 140 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLETCMTLGT-----------LSESQAQ---- 140 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHHHHHHHHhCCCEEEEeCCc-----------CCHHHHH----
Confidence 578888888888889999987332211 11 112245555555422222333322221 3333333
Q ss_pred HHHhHcCCCcceEEecccC------CCCCCHHHHHHHHHHHHHhCCcce
Q 025312 116 ASLKRLDVDYIDLYYQHRV------DTSVPIEETIGEMKKLVEEGKIKY 158 (255)
Q Consensus 116 ~sL~~L~~d~iDl~~lH~~------~~~~~~~~~~~~l~~l~~~G~vr~ 158 (255)
-|+..|+|++.+-+=-.| -....+++.++.++.+++.|.--.
T Consensus 141 -~LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~ 188 (345)
T PRK15108 141 -RLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVC 188 (345)
T ss_pred -HHHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCcee
Confidence 355667765433110111 112357889999999999997433
No 150
>PRK12569 hypothetical protein; Provisional
Probab=32.34 E-value=2.1e+02 Score=23.87 Aligned_cols=83 Identities=14% Similarity=0.270 Sum_probs=50.3
Q ss_pred eecccccCCCCCCCCCHHHHHHHHHHH-HHcCCCceecccccCCCchHHHHHHHHhcCCCCceEEEecccccccCc-ccc
Q 025312 24 GYGCMNLSGGYSSPVSEEDGISMIKHA-FSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGV-AGV 101 (255)
Q Consensus 24 g~Gt~~~~~~~~~~~~~~~~~~~l~~a-~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~R~~~~i~tK~~~~~~~~-~~~ 101 (255)
+||.|.+|.. .+++.-.++..| +..|+ +.| ....+.+.++--....+-|-...+.+...+ ++.
T Consensus 14 sfG~~~~g~~-----~D~~lmp~ItsaNIACG~-------HAG---Dp~~M~~tv~lA~~~~V~IGAHPsyPD~~gFGRr 78 (245)
T PRK12569 14 GFGPWRIGDG-----VDEALMPLISSANIATGF-------HAG---DPNIMRRTVELAKAHGVGIGAHPGFRDLVGFGRR 78 (245)
T ss_pred CCCCcCCCCc-----cHHHHHHHhhhHHHhccc-------cCC---CHHHHHHHHHHHHHcCCEeccCCCCCcCCCCCCC
Confidence 5788876520 166777777777 34453 455 466666666543455676766655433222 233
Q ss_pred ccCCCHHHHHHHHHHHHhHc
Q 025312 102 IVKGAPDYVRSCCEASLKRL 121 (255)
Q Consensus 102 ~~~~~~~~i~~~~~~sL~~L 121 (255)
.-+.+++.++..+...+..|
T Consensus 79 ~m~~s~~el~~~v~yQigaL 98 (245)
T PRK12569 79 HINASPQELVNDVLYQLGAL 98 (245)
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 45688999888877766655
No 151
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=31.86 E-value=2.8e+02 Score=22.51 Aligned_cols=51 Identities=16% Similarity=0.189 Sum_probs=34.7
Q ss_pred CHHHHHHHHHHHHHcCCCceecccccCCCchHHHHHHHHhcCCCCceEEEecc
Q 025312 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKF 91 (255)
Q Consensus 39 ~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~R~~~~i~tK~ 91 (255)
+.+++.++.+..++.|++.+...-.... ..+.+.+.-++.++--+-.-|+.
T Consensus 25 ~~~~a~~i~~al~~~Gi~~iEitl~~~~--~~~~I~~l~~~~p~~~IGAGTVl 75 (212)
T PRK05718 25 KLEDAVPLAKALVAGGLPVLEVTLRTPA--ALEAIRLIAKEVPEALIGAGTVL 75 (212)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCcc--HHHHHHHHHHHCCCCEEEEeecc
Confidence 7899999999999999999997744433 56666554433443233345554
No 152
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=31.56 E-value=3e+02 Score=22.81 Aligned_cols=132 Identities=16% Similarity=0.188 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHHHHcCCCceecccc-cCC-Cch-HHHHHHHHhcCCCCceEEEecccccccCccccccCCCHHHHHHHHH
Q 025312 39 SEEDGISMIKHAFSKGITFFDTADV-YGQ-NAN-EVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCE 115 (255)
Q Consensus 39 ~~~~~~~~l~~a~~~Gi~~~DtA~~-Yg~-g~s-e~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (255)
+.+|+ ..|++.|..+||.=+. -|. |.+ ...+.+ +.+......-+|..+|-.. ..+..+..+..
T Consensus 9 ~~~EA----~~a~~~gaDiID~K~P~~GaLGA~~~~vi~~-i~~~~~~~~pvSAtiGDlp---------~~p~~~~~aa~ 74 (235)
T PF04476_consen 9 NVEEA----EEALAGGADIIDLKNPAEGALGALFPWVIRE-IVAAVPGRKPVSATIGDLP---------MKPGTASLAAL 74 (235)
T ss_pred CHHHH----HHHHhCCCCEEEccCCCCCCCCCCCHHHHHH-HHHHcCCCCceEEEecCCC---------CCchHHHHHHH
Confidence 55555 4567899999996542 222 333 444443 3332333466777776432 34555555554
Q ss_pred HHHhHcCCCcceEEecccCCCCCCHHHHH----HHHHHHHHhCCcceEEcCCCC------HHHHHHHhhcCCceEeeccC
Q 025312 116 ASLKRLDVDYIDLYYQHRVDTSVPIEETI----GEMKKLVEEGKIKYIGLSEAS------PGTIRRAHAVHPITAVQMEW 185 (255)
Q Consensus 116 ~sL~~L~~d~iDl~~lH~~~~~~~~~~~~----~~l~~l~~~G~vr~iGvsn~~------~~~l~~~~~~~~~~~~q~~~ 185 (255)
..- .-|+|||=+-+.-..+... .-+.+ +++.+.-.+.++-..+.+.+. +..+-++.....++.+++.-
T Consensus 75 ~~a-~~GvdyvKvGl~g~~~~~~-a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvMlDT 152 (235)
T PF04476_consen 75 GAA-ATGVDYVKVGLFGCKDYDE-AIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFDGVMLDT 152 (235)
T ss_pred HHH-hcCCCEEEEecCCCCCHHH-HHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCCEEEEec
Confidence 443 3588888876654332211 11223 333333334567788888874 44555555556677777754
Q ss_pred C
Q 025312 186 S 186 (255)
Q Consensus 186 n 186 (255)
-
T Consensus 153 a 153 (235)
T PF04476_consen 153 A 153 (235)
T ss_pred c
Confidence 3
No 153
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=31.35 E-value=3.4e+02 Score=23.29 Aligned_cols=57 Identities=18% Similarity=0.148 Sum_probs=41.3
Q ss_pred HHHHHhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHHhCCcceEEcCCCCHHHHHHHh
Q 025312 114 CEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAH 173 (255)
Q Consensus 114 ~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn~~~~~l~~~~ 173 (255)
..+.+...+.+.=|+++.-...... .++.++++.+++.| ++-|++++.....+.+..
T Consensus 116 ~~~~l~a~~l~~~DvvI~IS~SG~T--~~vi~al~~Ak~~G-a~~IaIT~~~~s~La~~a 172 (296)
T PRK12570 116 GAQDLKAIGLTADDVVVGIAASGRT--PYVIGALEYAKQIG-ATTIALSCNPDSPIAKIA 172 (296)
T ss_pred HHHHHHHcCCCCCCEEEEEeCCCCC--HHHHHHHHHHHHCC-CeEEEEECCCCChhHHhC
Confidence 3344555665566998887665544 36899999999998 677999998776666543
No 154
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=31.01 E-value=3.7e+02 Score=23.64 Aligned_cols=60 Identities=10% Similarity=0.001 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHHhHcCCCcceEEeccc-CCC-------CCCH---HHHH-HHHHHHHHhCCcceEEcCCCCH
Q 025312 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHR-VDT-------SVPI---EETI-GEMKKLVEEGKIKYIGLSEASP 166 (255)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH~-~~~-------~~~~---~~~~-~~l~~l~~~G~vr~iGvsn~~~ 166 (255)
-+.+.+++.++.. .+++.+++.++.+-- |+. ..+. .+.+ .+.+.|.+.|- .++=+|||..
T Consensus 167 qt~e~~~~tl~~~-~~l~p~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yeisnfa~ 238 (353)
T PRK05904 167 LKLKDLDEVFNFI-LKHKINHISFYSLEIKEGSILKKYHYTIDEDKEAEQLNYIKAKFNKLNY-KRYEVSNWTN 238 (353)
T ss_pred CCHHHHHHHHHHH-HhcCCCEEEEEeeEecCCChHhhcCCCCChHHHHHHHHHHHHHHHHcCC-cEEechhhcC
Confidence 4667777777644 467888888777642 210 0111 1233 34444556665 5577888864
No 155
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=30.83 E-value=3.7e+02 Score=23.54 Aligned_cols=95 Identities=14% Similarity=0.082 Sum_probs=52.8
Q ss_pred CCCceEEEecccccccCccccccCCCHHHHHHHHHHHHhHcC-CCcceEEecccCCC-----------CCCH--HHHHHH
Q 025312 81 PREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLD-VDYIDLYYQHRVDT-----------SVPI--EETIGE 146 (255)
Q Consensus 81 ~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~-~d~iDl~~lH~~~~-----------~~~~--~~~~~~ 146 (255)
...++.|..|++...... ...+.+... .+-+.|++.| +|++++ |.... .... .-.|+.
T Consensus 205 vg~~~~v~iRl~~~~~~~----~G~~~~e~~-~~~~~l~~~G~vd~i~v---s~g~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (343)
T cd04734 205 VGPDFIVGIRISGDEDTE----GGLSPDEAL-EIAARLAAEGLIDYVNV---SAGSYYTLLGLAHVVPSMGMPPGPFLPL 276 (343)
T ss_pred cCCCCeEEEEeehhhccC----CCCCHHHHH-HHHHHHHhcCCCCEEEe---CCCCCCcccccccccCCCCCCcchhHHH
Confidence 345688889987532110 113444443 3445566666 566554 32110 0001 113556
Q ss_pred HHHHHHhCCcceEEcCCC-CHHHHHHHhhcCCceEeec
Q 025312 147 MKKLVEEGKIKYIGLSEA-SPGTIRRAHAVHPITAVQM 183 (255)
Q Consensus 147 l~~l~~~G~vr~iGvsn~-~~~~l~~~~~~~~~~~~q~ 183 (255)
.+.+++.=++--+++.+. +++.++++++....|.+.+
T Consensus 277 ~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~ 314 (343)
T cd04734 277 AARIKQAVDLPVFHAGRIRDPAEAEQALAAGHADMVGM 314 (343)
T ss_pred HHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCCCeeee
Confidence 666666556777777765 7899999988766665544
No 156
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=30.70 E-value=3.8e+02 Score=23.64 Aligned_cols=119 Identities=13% Similarity=0.180 Sum_probs=72.2
Q ss_pred CCHHHHHHHHHHHHHcC---CCceecccccCCCchHHHHHHHHhcCCCCceEEEecccccccCccccccCCCHHHHHHHH
Q 025312 38 VSEEDGISMIKHAFSKG---ITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCC 114 (255)
Q Consensus 38 ~~~~~~~~~l~~a~~~G---i~~~DtA~~Yg~g~se~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~ 114 (255)
.+.++..+++....+.- +-.+|..+..+.. -..+-+.+. ...-++|.+|.-.... ....+.+.+-+
T Consensus 48 ~~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~--~~~l~~~~~--~~piilV~NK~DLl~k-------~~~~~~~~~~l 116 (360)
T TIGR03597 48 LNDDDFLNLLNSLGDSNALIVYVVDIFDFEGSL--IPELKRFVG--GNPVLLVGNKIDLLPK-------SVNLSKIKEWM 116 (360)
T ss_pred CCHHHHHHHHhhcccCCcEEEEEEECcCCCCCc--cHHHHHHhC--CCCEEEEEEchhhCCC-------CCCHHHHHHHH
Confidence 45666777666654322 2355755444331 112223332 4456789999854321 13456666666
Q ss_pred HHHHhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHHhCCcceEEcCCCCHHH
Q 025312 115 EASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGT 168 (255)
Q Consensus 115 ~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn~~~~~ 168 (255)
.+.++.+|....|++.+..- ....++++++.+.++.+.+.|-.+|.+|..-+.
T Consensus 117 ~~~~k~~g~~~~~i~~vSAk-~g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKSt 169 (360)
T TIGR03597 117 KKRAKELGLKPVDIILVSAK-KGNGIDELLDKIKKARNKKDVYVVGVTNVGKSS 169 (360)
T ss_pred HHHHHHcCCCcCcEEEecCC-CCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHH
Confidence 66677787654466665443 335588899999888777789999999996543
No 157
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=30.40 E-value=51 Score=27.44 Aligned_cols=23 Identities=22% Similarity=0.530 Sum_probs=21.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCC
Q 025312 33 GYSSPVSEEDGISMIKHAFSKGI 55 (255)
Q Consensus 33 ~~~~~~~~~~~~~~l~~a~~~Gi 55 (255)
.|..+.++|++.+++..|+++||
T Consensus 178 r~k~dlt~eea~~Lv~eAi~AGi 200 (271)
T KOG0173|consen 178 RWKPDLTKEEAIKLVCEAIAAGI 200 (271)
T ss_pred hcCcccCHHHHHHHHHHHHHhhh
Confidence 57777899999999999999997
No 158
>PF01244 Peptidase_M19: Membrane dipeptidase (Peptidase family M19); InterPro: IPR008257 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of peptidases belong to the MEROPS peptidase family M19 (membrane dipeptidase family, clan MJ). The protein fold of the peptidase domain for members of this family resembles that of Klebsiella urease, the type example for clan MJ. Renal dipeptidase (rDP) (3.4.13.19 from EC), also known as microsomal dipeptidase, is a zinc-dependent metalloenzyme that hydrolyzes a wide range of dipeptides. It is involved in renal metabolism of glutathione and its conjugates. It is a homodimeric disulphide-linked glycoprotein attached to the renal brush border microvilli membrane by a GPI-anchor. A glutamate residue has recently been shown [,] to be important for the catalytic activity of rDP. rDP seems to be evolutionary related to hypothetical proteins in the PQQ biosynthesis operons of Acinetobacter calcoaceticus and Klebsiella pneumoniae.; GO: 0008235 metalloexopeptidase activity, 0008239 dipeptidyl-peptidase activity, 0016805 dipeptidase activity, 0006508 proteolysis; PDB: 3NEH_B 2RAG_D 3LU2_A 3B40_A 3LY0_A 3FDG_B 2I5G_B 3S2J_A 3S2N_A 3S2L_A ....
Probab=30.30 E-value=79 Score=27.47 Aligned_cols=108 Identities=15% Similarity=0.203 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHcCCCceecccccCCCchHHHHHHHHhcCCCCceEEEecccccccCccccccCCCHHHHHHHHHHHHhH
Q 025312 41 EDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKR 120 (255)
Q Consensus 41 ~~~~~~l~~a~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~ 120 (255)
+.-+++|+..-+.|+ .+|.|.. ||+.+-++++-. +.-+|+|..+...-.+ .+++-.+.. ++..-++
T Consensus 160 ~~G~~vV~~mn~lGm-~vDvSH~-----s~~t~~Dv~~~s--~~PviaSHSn~ral~~---h~RNltDe~---iraia~~ 225 (320)
T PF01244_consen 160 PFGREVVREMNRLGM-LVDVSHL-----SEKTFWDVLEIS--KKPVIASHSNARALCP---HPRNLTDEQ---IRAIAER 225 (320)
T ss_dssp HHHHHHHHHHHHHT--EEE-TTB------HHHHHHHHHH---SSEEEECCEEBTTTS-----TTSB-HHH---HHHHHHT
T ss_pred hHHHHHHHHHHHcCC-eeeeccC-----CHHHHHHHHhhc--CCCEEEeccChHhhCC---CCCCCCHHH---HHHHHHC
Confidence 446899999999996 8999875 788988988742 3467777765432111 112222222 2333333
Q ss_pred cCCCcceEEeccc---C--CCCCCHHHHHHHHHHHHHhCCcceEEcCCC
Q 025312 121 LDVDYIDLYYQHR---V--DTSVPIEETIGEMKKLVEEGKIKYIGLSEA 164 (255)
Q Consensus 121 L~~d~iDl~~lH~---~--~~~~~~~~~~~~l~~l~~~G~vr~iGvsn~ 164 (255)
=|+ |-+.+... + +....++++.+.++.+++-+=+.+||+.+-
T Consensus 226 GGv--iGi~~~~~fl~~~~~~~~~~~~~~~Hi~y~~~l~G~dhVgiGsD 272 (320)
T PF01244_consen 226 GGV--IGINFYPAFLGDDWDPRASLDDLVDHIDYIVDLVGIDHVGIGSD 272 (320)
T ss_dssp T-E--EEEESSHHHHSTTHSSG-BHHHHHHHHHHHHHHH-GGGEEEE--
T ss_pred CcE--EEEEcchhhhcccccccccHHHHHHHHHHHHHhcCCCeEEECcc
Confidence 332 44433322 1 244568889999999888887999999653
No 159
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=30.25 E-value=5.2e+02 Score=25.16 Aligned_cols=99 Identities=11% Similarity=0.083 Sum_probs=64.2
Q ss_pred CCHHHHHHHHHHHHHcCCCceeccc--ccCCCchHHHHHHHHhcCCCCceEEEe--cccccccCccc---cc-cCC---C
Q 025312 38 VSEEDGISMIKHAFSKGITFFDTAD--VYGQNANEVLLGKALKQLPREKIQVAT--KFGIAGIGVAG---VI-VKG---A 106 (255)
Q Consensus 38 ~~~~~~~~~l~~a~~~Gi~~~DtA~--~Yg~g~se~~lg~~l~~~~R~~~~i~t--K~~~~~~~~~~---~~-~~~---~ 106 (255)
.+.+++.+.+....+.|+.-|=.+. +|-+-..|..+++.+++.. .++.|++ ++++..+--.. .. ... -
T Consensus 136 lD~~~v~~~~~~l~~~gv~siAVs~~~S~~NP~HE~~v~eiire~~-~~i~V~~shev~p~~~~~eR~~TavlnA~L~pi 214 (674)
T COG0145 136 LDEEEVREAAAALKAAGVEAIAVSSLFSYRNPEHELRVAEIIREIG-PDIPVSLSHEVSPEIGEYERANTAVLNAYLSPI 214 (674)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEEEEecccCCcHHHHHHHHHHHHhc-CCceEEechhcchhcCcccchhhheeeeeehHH
Confidence 6888999999999999999776543 4444568999999999844 5677777 77763321000 00 001 1
Q ss_pred HHHHHHHHHHHHhHcCCCcceEEecccCCCCC
Q 025312 107 PDYVRSCCEASLKRLDVDYIDLYYQHRVDTSV 138 (255)
Q Consensus 107 ~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~ 138 (255)
.....+++++.|+.-|.+ .+++++.+.....
T Consensus 215 ~~~yl~~v~~~l~~~g~~-~~l~~m~sdGgl~ 245 (674)
T COG0145 215 LRRYLEAVKDALKERGIK-ARLMVMQSDGGLV 245 (674)
T ss_pred HHHHHHHHHHHHHhcCCC-ceeEEEecCCccc
Confidence 224556667777777765 5777777654433
No 160
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=30.22 E-value=3e+02 Score=22.63 Aligned_cols=71 Identities=14% Similarity=0.104 Sum_probs=48.4
Q ss_pred cCCCHHHHHHHHHHHHhHcCCC-c-------------------------ceEEecccCCCCCCH---HHHHHHHHHHHHh
Q 025312 103 VKGAPDYVRSCCEASLKRLDVD-Y-------------------------IDLYYQHRVDTSVPI---EETIGEMKKLVEE 153 (255)
Q Consensus 103 ~~~~~~~i~~~~~~sL~~L~~d-~-------------------------iDl~~lH~~~~~~~~---~~~~~~l~~l~~~ 153 (255)
++.+...+++.+++.-++|+.+ | .+++.+..|-.-.++ ....+.+.+++.+
T Consensus 103 ~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~e 182 (245)
T COG4555 103 NGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNE 182 (245)
T ss_pred hhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcC
Confidence 4456667777777777777742 2 334444444332332 4577889999999
Q ss_pred CCcceEEcCCCCHHHHHHHhhc
Q 025312 154 GKIKYIGLSEASPGTIRRAHAV 175 (255)
Q Consensus 154 G~vr~iGvsn~~~~~l~~~~~~ 175 (255)
|+ .+=+|+|..+.++++.+.
T Consensus 183 gr--~viFSSH~m~EvealCDr 202 (245)
T COG4555 183 GR--AVIFSSHIMQEVEALCDR 202 (245)
T ss_pred Cc--EEEEecccHHHHHHhhhe
Confidence 98 688999999999888754
No 161
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=30.02 E-value=3.6e+02 Score=23.25 Aligned_cols=108 Identities=13% Similarity=0.146 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHcCCCceecccccCCCchHHHHHHHHhcCCCCceEEEecccccccCccccccCCCHHHHHHHHHHHHhH
Q 025312 41 EDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKR 120 (255)
Q Consensus 41 ~~~~~~l~~a~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~ 120 (255)
+.-+++|+..-+.|+ .+|+|+. |++.+-++++-. +.-+|+|..+...-.+ ...+.+.+.++ ...++
T Consensus 154 ~~G~~vv~~mn~lGm-iiDvSH~-----s~~~~~dv~~~s--~~PviaSHsn~ral~~--h~RNltD~~i~----~ia~~ 219 (309)
T cd01301 154 PFGKELVREMNRLGI-IIDLSHL-----SERTFWDVLDIS--NAPVIASHSNARALCD--HPRNLTDAQLK----AIAET 219 (309)
T ss_pred HHHHHHHHHHHHcCC-EEEcCCC-----CHHHHHHHHHhc--CCCEEEeccChHHhcC--CCCCCCHHHHH----HHHHc
Confidence 456888999999996 6899875 788888888742 2347777765332110 11234444443 22233
Q ss_pred cCCCcceEEeccc---CCCCCCHHHHHHHHHHHHHhCCcceEEcCCC
Q 025312 121 LDVDYIDLYYQHR---VDTSVPIEETIGEMKKLVEEGKIKYIGLSEA 164 (255)
Q Consensus 121 L~~d~iDl~~lH~---~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn~ 164 (255)
=|+ |-+.+.-. .+....+++.++.++.+.+-.=+.++|+.+-
T Consensus 220 GGv--igi~~~~~fl~~~~~~~~~~~~~hi~~i~~l~G~dhVgiGsD 264 (309)
T cd01301 220 GGV--IGVNFYPAFLSPGADATLDDVVRHIDYIVDLIGIDHVGLGSD 264 (309)
T ss_pred CCE--EEEeeeHHHhCCCCCCCHHHHHHHHHHHHHhcCCCeEEECcc
Confidence 332 33222211 1234568889999999888877999999753
No 162
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=29.99 E-value=1.2e+02 Score=27.72 Aligned_cols=51 Identities=18% Similarity=0.219 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHHhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHHhCCcceEEc
Q 025312 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGL 161 (255)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~vr~iGv 161 (255)
.+.+...+.+.++|+.||+++ |-+ .......+..-+.+++|+++|++ +...
T Consensus 48 Rs~~~~~~~I~e~L~wLGI~~-De~----y~QSer~~~y~~~~e~L~e~G~A-Y~C~ 98 (445)
T PRK12558 48 RSKQEYADAIAEDLKWLGINW-DRT----FRQSDRFDRYDEAAEKLKAAGRL-YPCY 98 (445)
T ss_pred cchHHHHHHHHHHHHHcCCCC-Ccc----ccHHHHHHHHHHHHHHHHHCCCE-EEec
Confidence 466788999999999999974 632 22223344567888999999986 4433
No 163
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=29.90 E-value=3.5e+02 Score=22.98 Aligned_cols=74 Identities=18% Similarity=0.218 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHHc--CCCceecccccCCCchHHHHHHHHhcC-CCCceEEEecccccccCccccccCCCHHHHHHHHH
Q 025312 39 SEEDGISMIKHAFSK--GITFFDTADVYGQNANEVLLGKALKQL-PREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCE 115 (255)
Q Consensus 39 ~~~~~~~~l~~a~~~--Gi~~~DtA~~Yg~g~se~~lg~~l~~~-~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (255)
+.+.+..+.++++.. |+.+.= ..|..=.+++.+-+++.+. ...-+++.|=+ -..+++.++
T Consensus 14 tGeTAe~v~~A~l~QF~~~~~~~--~~~p~v~~~~~~~~i~~~~~~~~~iV~~Tlv---------------~~elr~~l~ 76 (269)
T PRK05339 14 TGETAETVGRAALSQFPNVEFEE--HRYPFVRTEEKADEVLEEINAERPIVFYTLV---------------DPELREILE 76 (269)
T ss_pred HHHHHHHHHHHHHHhCCCCCeeE--EEeCCcCCHHHHHHHHHHHHhcCCEEEEeCC---------------CHHHHHHHH
Confidence 446666666666643 443321 2232223666666677652 34456677654 246899999
Q ss_pred HHHhHcCCCcceEE
Q 025312 116 ASLKRLDVDYIDLY 129 (255)
Q Consensus 116 ~sL~~L~~d~iDl~ 129 (255)
+..+.+|+.++|++
T Consensus 77 ~~~~~~~i~~vdll 90 (269)
T PRK05339 77 ERCAEFGIPCIDIL 90 (269)
T ss_pred HHHHHcCCCEEecc
Confidence 99999999999986
No 164
>PRK00915 2-isopropylmalate synthase; Validated
Probab=29.86 E-value=4.7e+02 Score=24.44 Aligned_cols=25 Identities=12% Similarity=0.247 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHHHHcCCCceeccc
Q 025312 38 VSEEDGISMIKHAFSKGITFFDTAD 62 (255)
Q Consensus 38 ~~~~~~~~~l~~a~~~Gi~~~DtA~ 62 (255)
++.++..++.+...+.|+..|+...
T Consensus 23 ~s~e~K~~ia~~L~~~Gv~~IE~G~ 47 (513)
T PRK00915 23 LTVEEKLQIAKQLERLGVDVIEAGF 47 (513)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 4778889999999999999999765
No 165
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=29.85 E-value=3.1e+02 Score=22.39 Aligned_cols=122 Identities=8% Similarity=0.026 Sum_probs=64.3
Q ss_pred CCceec-ccccCCCchHHHHHHHHhcCCCCceEEEecccccccCccccccCCCHHHHHHHHHHHHhHcCCCcceEEeccc
Q 025312 55 ITFFDT-ADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHR 133 (255)
Q Consensus 55 i~~~Dt-A~~Yg~g~se~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~ 133 (255)
++.++. +..|+. .+++.+.+|.++ -++++.++-|+...-.-.. ......+.+.+.+-+.++-|| +.+..+++..
T Consensus 19 F~~VEvn~TFY~~-P~~~t~~~W~~~-~p~~F~F~vK~~~~iTH~~--~l~~~~~~~~~~F~~~~~~L~-~klg~iL~Q~ 93 (230)
T PF01904_consen 19 FNTVEVNSTFYRI-PSPETVARWREQ-TPEGFRFSVKAPQLITHER--RLRDCAEELWRRFLEALEPLG-EKLGPILFQF 93 (230)
T ss_dssp -SEEEE-HHCCSS-S-HHHHHHHHCT-S-TT-EEEEE--CCCCCCC--HCGSSHHHHHHHHHHHCHHHH-T-EEEEEEE-
T ss_pred CCeEEECcccCCC-CCHHHHHHHHhh-CCCCeEEEEeccHHheecc--cccccHHHHHHHHHHHHHHHh-hcceEEEEEc
Confidence 454443 345643 268888899875 4578999999864332100 011245666566666999999 9999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHh---CCcceEEcCC--CCHHHHHHHhhcCCceEe
Q 025312 134 VDTSVPIEETIGEMKKLVEE---GKIKYIGLSE--ASPGTIRRAHAVHPITAV 181 (255)
Q Consensus 134 ~~~~~~~~~~~~~l~~l~~~---G~vr~iGvsn--~~~~~l~~~~~~~~~~~~ 181 (255)
|..-..-.+.++.|..+.+. |.-.++=+-+ |-.+.+.++++...+..+
T Consensus 94 Ppsf~~~~~~~~~l~~~l~~~~~~~~~avE~R~~sW~~~~~~~~l~~~~~~~v 146 (230)
T PF01904_consen 94 PPSFRFTPENLERLDAFLDRLPRGFRYAVEFRHPSWFTEEVFELLREHGVALV 146 (230)
T ss_dssp -TT--S-HHHHHHHHHHHHHTT-TS-EEEE--BGGGGCHHHHHHHHHTT-EEE
T ss_pred CCCcCCCHHHHHHHHHHHhhcccccceEEecCCcchhhHHHHHHHHHcCCEEE
Confidence 87543445566666666655 4444455543 323556666665444333
No 166
>PF10171 DUF2366: Uncharacterised conserved protein (DUF2366); InterPro: IPR019322 This is a set of proteins conserved from nematodes to humans. The function is not known.
Probab=29.85 E-value=1.1e+02 Score=24.10 Aligned_cols=40 Identities=18% Similarity=0.326 Sum_probs=28.8
Q ss_pred ceEEecccCCCCCCHHHHHHHHHHHHHhCCcceEEcCCCC
Q 025312 126 IDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEAS 165 (255)
Q Consensus 126 iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn~~ 165 (255)
-++++++..-....-++-+..|..+..+|++|++-+--++
T Consensus 78 n~l~lv~~~~rNp~S~~hvq~l~~l~nqg~Lr~~nLG~~S 117 (173)
T PF10171_consen 78 NDLLLVSPAIRNPTSDKHVQRLMRLRNQGRLRYLNLGLFS 117 (173)
T ss_pred CceeccChhhcCchHHHHHHHHHHHhcCCceEEeeeeeEE
Confidence 4566676554444456789999999999999987664333
No 167
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=29.73 E-value=4e+02 Score=23.58 Aligned_cols=94 Identities=11% Similarity=-0.011 Sum_probs=47.3
Q ss_pred EEEecccccccCccccccCCCHHHHHHHHHHHHhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHHhCCcceEEcCCCC
Q 025312 86 QVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEAS 165 (255)
Q Consensus 86 ~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn~~ 165 (255)
+|..|+......+. .....+.+.....+-+-|+..|+|+|++-.-++.....-..... +++++.=.+--+++..++
T Consensus 227 ~igvRis~~~~~~~-~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~~~~~~~~~---~~ik~~~~~pv~~~G~~~ 302 (362)
T PRK10605 227 RIGIRISPLGTFNN-VDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAGGEPYSDAFR---EKVRARFHGVIIGAGAYT 302 (362)
T ss_pred eEEEEECCcccccc-CCCCCCHHHHHHHHHHHHHHcCCCEEEeccccccCCccccHHHH---HHHHHHCCCCEEEeCCCC
Confidence 48888865310000 01124555433445556677888888875422211111111122 233332122344555578
Q ss_pred HHHHHHHhhcCCceEeec
Q 025312 166 PGTIRRAHAVHPITAVQM 183 (255)
Q Consensus 166 ~~~l~~~~~~~~~~~~q~ 183 (255)
++..+++++....|.+-+
T Consensus 303 ~~~ae~~i~~G~~D~V~~ 320 (362)
T PRK10605 303 AEKAETLIGKGLIDAVAF 320 (362)
T ss_pred HHHHHHHHHcCCCCEEEE
Confidence 999999988776665543
No 168
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=29.70 E-value=3.4e+02 Score=22.74 Aligned_cols=75 Identities=19% Similarity=0.110 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHHHhHcCCCcceEEe-cccCCCC-CCHH----HHHHHHHHHHHhCCcceEEcCCCCHHHHHHHhhcCCc
Q 025312 105 GAPDYVRSCCEASLKRLDVDYIDLYY-QHRVDTS-VPIE----ETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPI 178 (255)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~-lH~~~~~-~~~~----~~~~~l~~l~~~G~vr~iGvsn~~~~~l~~~~~~~~~ 178 (255)
.+.+.+.+..++.+ +-|-++||+-. --+|+.. .+.+ .+...++.+++.-.+- +.+-+++++.++++++....
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~G~~ 98 (257)
T cd00739 21 LSLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDTFRAEVARAALEAGAD 98 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHhCCC
Confidence 45566666555554 55889999853 2335432 1222 3444556666653443 88999999999999987543
Q ss_pred eEe
Q 025312 179 TAV 181 (255)
Q Consensus 179 ~~~ 181 (255)
-+|
T Consensus 99 iIN 101 (257)
T cd00739 99 IIN 101 (257)
T ss_pred EEE
Confidence 333
No 169
>PLN02775 Probable dihydrodipicolinate reductase
Probab=29.53 E-value=2.3e+02 Score=24.24 Aligned_cols=58 Identities=12% Similarity=0.108 Sum_probs=44.1
Q ss_pred HHHHHhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHHhCCcceEEcCCCCHHHHHHHhhc
Q 025312 114 CEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV 175 (255)
Q Consensus 114 ~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn~~~~~l~~~~~~ 175 (255)
+++.|..+.-+|.|++++..-. .+.+.+.++.+.+.|+---+|.+.|+.++++++.+.
T Consensus 68 l~~~l~~~~~~~~~~VvIDFT~----P~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~~~~ 125 (286)
T PLN02775 68 REAVLSSVKAEYPNLIVVDYTL----PDAVNDNAELYCKNGLPFVMGTTGGDRDRLLKDVEE 125 (286)
T ss_pred HHHHHHHhhccCCCEEEEECCC----hHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhc
Confidence 3444544444578877777643 356788999999999999999999999998887664
No 170
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=29.20 E-value=3.8e+02 Score=23.26 Aligned_cols=128 Identities=11% Similarity=0.071 Sum_probs=72.0
Q ss_pred CHHHHHHHHHHHHHcCCCceecccccCC------CchHHHHHHHHhcCCCCceEEEecccccccCccccccCCCHHHHHH
Q 025312 39 SEEDGISMIKHAFSKGITFFDTADVYGQ------NANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRS 112 (255)
Q Consensus 39 ~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~------g~se~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~ 112 (255)
+.++..+.+..+.+.|++.|-.--..+. ....+.+ +++++.-.+++.|...... .++.+...+
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v-~~ir~~~g~~~~l~vDaN~----------~~~~~~a~~ 207 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARV-RAVREAVGPDVDLMVDANG----------RWDLAEAIR 207 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHH-HHHHHhhCCCCEEEEECCC----------CCCHHHHHH
Confidence 4677778888889999998864322111 0012222 3344322235555555421 134444332
Q ss_pred HHHHHHhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHHhCCcc-eEEcCCCCHHHHHHHhhcCCceEeeccCCc
Q 025312 113 CCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSL 187 (255)
Q Consensus 113 ~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~vr-~iGvsn~~~~~l~~~~~~~~~~~~q~~~n~ 187 (255)
-+ +.|+.+ ++.++..|-+.. .++.+.++++.-.+. ..|=|-++++.+.++++...++++|+...-
T Consensus 208 ~~-~~l~~~-----~i~~iEqP~~~~----~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~ 273 (357)
T cd03316 208 LA-RALEEY-----DLFWFEEPVPPD----DLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTK 273 (357)
T ss_pred HH-HHhCcc-----CCCeEcCCCCcc----CHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCCCEEecCccc
Confidence 22 223333 445566664432 456677777775555 444556688999999987788888887544
No 171
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=29.15 E-value=2.2e+02 Score=21.15 Aligned_cols=48 Identities=6% Similarity=-0.078 Sum_probs=29.2
Q ss_pred HHHHHHHHHcCCCceecccccCC--------Cc----------hHHHHHHHHhcCCCCceEEEecc
Q 025312 44 ISMIKHAFSKGITFFDTADVYGQ--------NA----------NEVLLGKALKQLPREKIQVATKF 91 (255)
Q Consensus 44 ~~~l~~a~~~Gi~~~DtA~~Yg~--------g~----------se~~lg~~l~~~~R~~~~i~tK~ 91 (255)
...+..+++.|+|+||.=-.++. |. .-+.+.+++.+.+.+-+++.-|-
T Consensus 31 ~~~i~~qL~~GvR~~dirv~~~~~~~~~v~Hg~~~~~~~~~~dvL~~i~~fl~~~p~e~VIl~l~~ 96 (135)
T smart00148 31 VEGYIQALDHGCRCVELDCWDGPDGEPVIYHGHTFTLPIKLSEVLEAIKDFAFVTSPYPVILSLEN 96 (135)
T ss_pred HHHHHHHHHhCCCEEEEEcccCCCCCEEEEECCcccccEEHHHHHHHHHHHHHhCCCCcEEEeehh
Confidence 45778899999999985433321 11 12234444444566777777774
No 172
>COG1151 6Fe-6S prismane cluster-containing protein [Energy production and conversion]
Probab=28.83 E-value=4.4e+02 Score=24.94 Aligned_cols=51 Identities=16% Similarity=0.267 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhHcCCCcceEEecccCC---CCCCHHHHHHHHHHHHHhCCcceEEc
Q 025312 108 DYVRSCCEASLKRLDVDYIDLYYQHRVD---TSVPIEETIGEMKKLVEEGKIKYIGL 161 (255)
Q Consensus 108 ~~i~~~~~~sL~~L~~d~iDl~~lH~~~---~~~~~~~~~~~l~~l~~~G~vr~iGv 161 (255)
+...+-++..++..+-.+.+ -|-.- ....+.+...-|.+++++|+||.+.+
T Consensus 360 ~~~~~vIe~A~e~~~~r~~~---~~~ivvGFs~~~il~a~d~lielI~sGkIKgv~~ 413 (576)
T COG1151 360 EDFSEVIEMAIENFKNRKSE---KHKIVVGFSHESILAAADPLIELIASGKIKGVVV 413 (576)
T ss_pred hhHHHHHHHHHhccCCcccc---cceeEEeecHHHHHHHHHHHHHHHhcCCcceEEE
Confidence 66777888888888876666 12110 01224566778899999999998743
No 173
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=28.67 E-value=2.7e+02 Score=21.37 Aligned_cols=98 Identities=17% Similarity=0.092 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHHcCCCceecccccCCCchHHHHHHHHhcCCCC-ceEEEecccccccCccccccCCCHHHHHHHHHHH
Q 025312 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPRE-KIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEAS 117 (255)
Q Consensus 39 ~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~R~-~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 117 (255)
+.+...++++.+++.|++-+-+.. ..+..+.+. .++ ++-|..+++..... ...+...+.+++.
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g--------~~i~~~~~~-~~~~~~~v~~~v~~~~~~-------~~~~~~~~~a~~a 74 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP--------GYVRLAADA-LAGSDVPVIVVVGFPTGL-------TTTEVKVAEVEEA 74 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH--------HHHHHHHHH-hCCCCCeEEEEecCCCCC-------CcHHHHHHHHHHH
Confidence 678889999999999998776543 333333332 234 57777777643211 1133444444444
Q ss_pred HhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHHh
Q 025312 118 LKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEE 153 (255)
Q Consensus 118 L~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~ 153 (255)
.++|.|.+.+..-+...+..+.+++.+.++++.+.
T Consensus 75 -~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~ 109 (201)
T cd00945 75 -IDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEA 109 (201)
T ss_pred -HHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHH
Confidence 45576554443222111211246677777777776
No 174
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=28.67 E-value=2.9e+02 Score=23.41 Aligned_cols=115 Identities=9% Similarity=0.065 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHHHHcCCCceecccccCCCchHHHHHHHHhc-----CCCCceEEEecccccc--c-CccccccCCCHHHH
Q 025312 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ-----LPREKIQVATKFGIAG--I-GVAGVIVKGAPDYV 110 (255)
Q Consensus 39 ~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~-----~~R~~~~i~tK~~~~~--~-~~~~~~~~~~~~~i 110 (255)
.-..+.+.|+...+.|+.++=.+.+-.. +.+.+-+-|+. ...++++-++-..... . ..+.-.+-..
T Consensus 25 ~ipga~e~l~~L~~~g~~~iflTNn~~~--s~~~~~~~L~~~~~~~~~~~~i~TS~~at~~~l~~~~~~~kv~viG---- 98 (269)
T COG0647 25 AIPGAAEALKRLKAAGKPVIFLTNNSTR--SREVVAARLSSLGGVDVTPDDIVTSGDATADYLAKQKPGKKVYVIG---- 98 (269)
T ss_pred cCchHHHHHHHHHHcCCeEEEEeCCCCC--CHHHHHHHHHhhcCCCCCHHHeecHHHHHHHHHHhhCCCCEEEEEC----
Confidence 4466889999999999999987776554 66666666665 1233444333321111 0 0000111122
Q ss_pred HHHHHHHHhHcCCCcce-------EEecccCCCCCCHHHHHHHHHHHHHhCCcceEEc
Q 025312 111 RSCCEASLKRLDVDYID-------LYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGL 161 (255)
Q Consensus 111 ~~~~~~sL~~L~~d~iD-------l~~lH~~~~~~~~~~~~~~l~~l~~~G~vr~iGv 161 (255)
...+.+.|+.+|..-++ -+.+...|+...++...+++.. ..+| +++|+.
T Consensus 99 ~~~l~~~l~~~G~~~~~~~~~~~~d~Vv~g~d~~~~~e~l~~a~~~-i~~g-~~fI~t 154 (269)
T COG0647 99 EEGLKEELEGAGFELVDEEEPARVDAVVVGLDRTLTYEKLAEALLA-IAAG-APFIAT 154 (269)
T ss_pred CcchHHHHHhCCcEEeccCCCCcccEEEEecCCCCCHHHHHHHHHH-HHcC-CcEEEe
Confidence 22355677788754333 3444555666666665555544 4445 777775
No 175
>PRK00396 rnpA ribonuclease P; Reviewed
Probab=28.58 E-value=2.5e+02 Score=20.88 Aligned_cols=63 Identities=16% Similarity=0.149 Sum_probs=39.0
Q ss_pred CCCceEEEec-ccccccCccccccCCCHHHHHHHHHHHHhHcC--CCcceEEecccCCCC-CCHHHHHHHHHHHHHh
Q 025312 81 PREKIQVATK-FGIAGIGVAGVIVKGAPDYVRSCCEASLKRLD--VDYIDLYYQHRVDTS-VPIEETIGEMKKLVEE 153 (255)
Q Consensus 81 ~R~~~~i~tK-~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~--~d~iDl~~lH~~~~~-~~~~~~~~~l~~l~~~ 153 (255)
.|=-+.|+-| ++.. ..+..|++.+.++.+... +.-.|++++-.+... .++.++.+.|..|.+.
T Consensus 46 ~RiG~~VsKK~~g~A----------V~RNRiKR~lRE~fR~~~~~l~g~DiVviaR~~~~~~~~~~l~~~l~~ll~k 112 (130)
T PRK00396 46 PRLGLVIGKKSVKLA----------VDRNRLKRLIRESFRLNQHSLAGWDIVVVARKGLGELENPELHQQFGKLWKR 112 (130)
T ss_pred ccEEEEEecccCccH----------hHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 4445666666 4432 455666666666665442 245899999888643 4566777766666544
No 176
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=28.42 E-value=2.1e+02 Score=22.72 Aligned_cols=65 Identities=14% Similarity=0.150 Sum_probs=40.8
Q ss_pred hHcCCCcceEEecccCCCCCCH-HHHHHHHHHHHHhCCcceEEcC-CCCHHHHHHHhhcCCceEeeccCC
Q 025312 119 KRLDVDYIDLYYQHRVDTSVPI-EETIGEMKKLVEEGKIKYIGLS-EASPGTIRRAHAVHPITAVQMEWS 186 (255)
Q Consensus 119 ~~L~~d~iDl~~lH~~~~~~~~-~~~~~~l~~l~~~G~vr~iGvs-n~~~~~l~~~~~~~~~~~~q~~~n 186 (255)
.++|+|++-+..-.. ++ ..+ .+..+.|.++... .+..+||- |-+.+.+.++.....++.+|+.-+
T Consensus 16 ~~~Gvd~ig~i~~~~-s~-R~v~~~~a~~l~~~~~~-~~~~V~v~vn~~~~~i~~ia~~~~~d~Vqlhg~ 82 (203)
T cd00405 16 AEAGADAIGFIFAPK-SP-RYVSPEQAREIVAALPP-FVKRVGVFVNEDLEEILEIAEELGLDVVQLHGD 82 (203)
T ss_pred HHcCCCEEEEecCCC-CC-CCCCHHHHHHHHHhCCC-CCcEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 367877766543322 22 222 4455556555543 36678885 667788888877788899998755
No 177
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=28.39 E-value=2.7e+02 Score=21.19 Aligned_cols=66 Identities=12% Similarity=0.149 Sum_probs=41.7
Q ss_pred CCCceEEEecccccccCccccccCCCHHHHHHHHHHHHhHcC--CCcceEEecccCCC-CCCHHHHHHHHHHHHHhCC
Q 025312 81 PREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLD--VDYIDLYYQHRVDT-SVPIEETIGEMKKLVEEGK 155 (255)
Q Consensus 81 ~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~--~d~iDl~~lH~~~~-~~~~~~~~~~l~~l~~~G~ 155 (255)
.|=-+.|+-|++... ..+..|++.+.++.+.+. +...|++++-.+.. ..++.++.+.|..|.++-.
T Consensus 48 ~RlG~sVSKKvg~~A---------V~RNRiKR~lRE~fR~~~~~l~~~DiVviar~~~~~~~~~~l~~~l~~LL~k~~ 116 (145)
T PRK04820 48 PRLGLAVSRKVDTRA---------VGRNRIKRVLREAMRQLLPELAPGDYVVVARSAAAKASNPQLRDAFLRLLRRAG 116 (145)
T ss_pred cEEEEEEeccccCcc---------hhHHHHHHHHHHHHHHhhhccCCCCEEEEEeCCcccCCHHHHHHHHHHHHHHhC
Confidence 444567777764221 455666666666665442 23448888877764 3567888888888877633
No 178
>PRK10508 hypothetical protein; Provisional
Probab=28.21 E-value=96 Score=27.10 Aligned_cols=42 Identities=14% Similarity=0.130 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHHHhHcCCCcceEEecccCCCCCCHHHHHHHHHHHH
Q 025312 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLV 151 (255)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~ 151 (255)
-+++.+.+.+++..+++|+|.+ +++.+. .+.++.++.++-|.
T Consensus 286 Gtpe~V~~kl~~l~~~~g~del---~~~~~~--~~~e~~~~S~~lla 327 (333)
T PRK10508 286 GDKAKVRHGLQSILRETQADEI---MVNGQI--FDHQARLHSFELAM 327 (333)
T ss_pred eCHHHHHHHHHHHHHHHCcCEE---EEECCC--CCHHHHHHHHHHHH
Confidence 5899999999999999998876 333332 24445555555443
No 179
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=28.05 E-value=4.3e+02 Score=23.46 Aligned_cols=128 Identities=13% Similarity=0.148 Sum_probs=68.4
Q ss_pred CCHHHHHHHHHHHHHcCCCceecccccCCCchHHHHH----HHHh---cC-CCCceEEEecccccccCccccccCCCHHH
Q 025312 38 VSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLG----KALK---QL-PREKIQVATKFGIAGIGVAGVIVKGAPDY 109 (255)
Q Consensus 38 ~~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~g~se~~lg----~~l~---~~-~R~~~~i~tK~~~~~~~~~~~~~~~~~~~ 109 (255)
.+.++..++++.+.+.|++.|-. .| | |..+. +.++ +. .-..+.|+|-. . .
T Consensus 90 ls~eei~~~i~~~~~~Gv~~I~~---tG-G--EPllr~dl~eli~~l~~~~gi~~i~itTNG-~-----------l---- 147 (373)
T PLN02951 90 LSQDEIVRLAGLFVAAGVDKIRL---TG-G--EPTLRKDIEDICLQLSSLKGLKTLAMTTNG-I-----------T---- 147 (373)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEE---EC-C--CCcchhhHHHHHHHHHhcCCCceEEEeeCc-c-----------h----
Confidence 56788999999889999987753 34 2 33322 2222 21 11235555542 1 0
Q ss_pred HHHHHHHHHhHcCCCcceEEecccCCCC--------CCHHHHHHHHHHHHHhCCc--c--eEEcCCCCHHHHHHHhhc--
Q 025312 110 VRSCCEASLKRLDVDYIDLYYQHRVDTS--------VPIEETIGEMKKLVEEGKI--K--YIGLSEASPGTIRRAHAV-- 175 (255)
Q Consensus 110 i~~~~~~sL~~L~~d~iDl~~lH~~~~~--------~~~~~~~~~l~~l~~~G~v--r--~iGvsn~~~~~l~~~~~~-- 175 (255)
+.+.+ ..|...|++.+- +-|+..++. ..++.+++.++.+++.|.. + .+-+-.++.+++.++++.
T Consensus 148 L~~~~-~~L~~aGld~Vn-ISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~G~~~vkin~vv~~g~N~~Ei~~li~~a~ 225 (373)
T PLN02951 148 LSRKL-PRLKEAGLTSLN-ISLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGYNPVKVNCVVMRGFNDDEICDFVELTR 225 (373)
T ss_pred HHHHH-HHHHhCCCCeEE-EeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHcCCCcEEEEEEecCCCCHHHHHHHHHHHH
Confidence 11222 234455655443 223433321 2357889999999999852 1 223334566666665543
Q ss_pred -CCceEeeccCCcCC
Q 025312 176 -HPITAVQMEWSLWT 189 (255)
Q Consensus 176 -~~~~~~q~~~n~~~ 189 (255)
.++.+.-++|.++.
T Consensus 226 ~~gi~vr~ie~mP~~ 240 (373)
T PLN02951 226 DKPINVRFIEFMPFD 240 (373)
T ss_pred hCCCeEEEEEcccCC
Confidence 44555555555543
No 180
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=27.88 E-value=1.7e+02 Score=24.98 Aligned_cols=69 Identities=12% Similarity=0.062 Sum_probs=41.9
Q ss_pred CCHHHHHHHHHHHHhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHHhCCcceEEcCCCCHHHHHHHhhc
Q 025312 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV 175 (255)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn~~~~~l~~~~~~ 175 (255)
++.+.. ..+-+.|.++|+++|++-.++.|.......+.++.+..+.+...++...+. .+...++.+++.
T Consensus 23 ~s~e~k-~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~ 91 (287)
T PRK05692 23 IPTADK-IALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAA 91 (287)
T ss_pred cCHHHH-HHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHc
Confidence 444443 445566899999999997665554222222345555555544445555554 467778887765
No 181
>TIGR00188 rnpA ribonuclease P protein component, eubacterial. The yeast mitochondrial RNase P protein component gene RPM2 has no obvious sequence similarity to rnpA, but resembles eukaryotic nuclear RNase P instead.
Probab=27.73 E-value=2.2e+02 Score=20.04 Aligned_cols=61 Identities=15% Similarity=0.184 Sum_probs=38.3
Q ss_pred CCCceEEEecccccccCccccccCCCHHHHHHHHHHHHhHcC--CCcceEEecccCCC-CCCHHHHHHHHHHHH
Q 025312 81 PREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLD--VDYIDLYYQHRVDT-SVPIEETIGEMKKLV 151 (255)
Q Consensus 81 ~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~--~d~iDl~~lH~~~~-~~~~~~~~~~l~~l~ 151 (255)
+|=-+.|+-|++.. ..+..+++.+.++.+... ....|++++-.+.. ..++.++.+.|..|.
T Consensus 41 ~RlGi~vsKK~g~A----------V~RNriKR~lRe~~R~~~~~l~~~d~v~i~r~~~~~~~~~~l~~~l~~l~ 104 (105)
T TIGR00188 41 PRVGLSVSKKVKNA----------VERNRIKRLIREVFRERQELLKALDVVVIVRKGFSELTYEAFLKLLLQLF 104 (105)
T ss_pred cEEEEEEecccCch----------hHHHHHHHHHHHHHHHhhcccCCccEEEEECCCcCcCCHHHHHHHHHHHh
Confidence 44456777776532 355566666666655442 23589888887764 456777877777663
No 182
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=27.24 E-value=3.5e+02 Score=22.09 Aligned_cols=65 Identities=12% Similarity=0.073 Sum_probs=37.8
Q ss_pred HHHhHcCCCcceEEecccCCCCCCHH-HHHHHHHHHHHhCCcceEEcCCC-CHHHHHHHhhcCCceEeec
Q 025312 116 ASLKRLDVDYIDLYYQHRVDTSVPIE-ETIGEMKKLVEEGKIKYIGLSEA-SPGTIRRAHAVHPITAVQM 183 (255)
Q Consensus 116 ~sL~~L~~d~iDl~~lH~~~~~~~~~-~~~~~l~~l~~~G~vr~iGvsn~-~~~~l~~~~~~~~~~~~q~ 183 (255)
+.++.+|+ |.+.+|..+...... --|+.+.++++.-.+.-|..... +++.+.++++....+.+++
T Consensus 156 ~~l~~~G~---d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~v 222 (243)
T cd04731 156 KEVEELGA---GEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALA 222 (243)
T ss_pred HHHHHCCC---CEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEE
Confidence 34456675 556666654321110 13566666666656666666655 6788888887655655555
No 183
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=27.10 E-value=4.6e+02 Score=23.45 Aligned_cols=61 Identities=10% Similarity=0.237 Sum_probs=40.6
Q ss_pred EecccCCCC-----------CCHHHHHHHHHHHHHhCCcceEEcC-------CCCHHHHHHHhh---cC------CceEe
Q 025312 129 YYQHRVDTS-----------VPIEETIGEMKKLVEEGKIKYIGLS-------EASPGTIRRAHA---VH------PITAV 181 (255)
Q Consensus 129 ~~lH~~~~~-----------~~~~~~~~~l~~l~~~G~vr~iGvs-------n~~~~~l~~~~~---~~------~~~~~ 181 (255)
+.||.|++. .+++++++++.+..++.. |.|-+- |-++++..++.+ .. +..+|
T Consensus 232 iSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~-rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VN 310 (371)
T PRK14461 232 ISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTR-RRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVN 310 (371)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhC-CEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEE
Confidence 678998664 246888999888865433 233332 566666666544 34 57899
Q ss_pred eccCCcCCc
Q 025312 182 QMEWSLWTR 190 (255)
Q Consensus 182 q~~~n~~~~ 190 (255)
-++||+...
T Consensus 311 LIp~Np~~~ 319 (371)
T PRK14461 311 LIPWNPVPG 319 (371)
T ss_pred EecCCCCCC
Confidence 999999643
No 184
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=27.09 E-value=3.6e+02 Score=22.29 Aligned_cols=130 Identities=15% Similarity=0.111 Sum_probs=75.3
Q ss_pred CHHHHHHHHHHHHHcCCCceecccccCCCc-hHHHHHHHHhcCCCCc-eEEEecccccccCccccccCCCHHHHHHHHHH
Q 025312 39 SEEDGISMIKHAFSKGITFFDTADVYGQNA-NEVLLGKALKQLPREK-IQVATKFGIAGIGVAGVIVKGAPDYVRSCCEA 116 (255)
Q Consensus 39 ~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~g~-se~~lg~~l~~~~R~~-~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (255)
+.+++.+.+..+.+.+.+.++.--.|=... +...+-..+++...+. +.++-+--.. + ..+..+.+.-.+.+.+
T Consensus 12 ~~~~~~e~~~~~~~~~~Di~E~RvD~l~~~~~~~~~~~~~~e~~~~~~~IfT~R~~~E---G--G~~~~~~~~~i~ll~~ 86 (231)
T COG0710 12 DIAELKEQAEKSKELDADIVELRVDLLESNVEVLEVAKALREKDPDKPLIFTFRTVKE---G--GEFPGSEEEYIELLKK 86 (231)
T ss_pred CHHHHHHHHHHhhccCCCEEEEeechhcccchHHHHHHHHHHhccCCceEEEEeehhh---c--CCCCCCHHHHHHHHHH
Confidence 678888888999999988776544443211 2233334444433444 4444431110 0 1123466666677777
Q ss_pred HHhHcCCCcceEEec----------------------ccCCCCCCHHHHHHHHHHHHHhC-CcceEEcCCCCHHHHHHHh
Q 025312 117 SLKRLDVDYIDLYYQ----------------------HRVDTSVPIEETIGEMKKLVEEG-KIKYIGLSEASPGTIRRAH 173 (255)
Q Consensus 117 sL~~L~~d~iDl~~l----------------------H~~~~~~~~~~~~~~l~~l~~~G-~vr~iGvsn~~~~~l~~~~ 173 (255)
..+.-+.+|+|+=+. |+.+...++++..+.|.++.+.| .|-.|-+.-.+.+.+..++
T Consensus 87 la~~~~~d~iDiEl~~~~~~~~~~~~~~~~~~vI~SyH~F~~TP~~~~i~~~l~km~~~~aDivKiAvm~~~~~DvL~ll 166 (231)
T COG0710 87 LAELNGPDYIDIELSSPEDDVKEIIKFAKKHGVIVSYHDFEKTPPLEEIIERLDKMESLGADIVKIAVMPQSKEDVLDLL 166 (231)
T ss_pred HHhhcCCCEEEEEccCcchhHHHHHhccccCCEEEEeccCCCCCcHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHHHH
Confidence 777767888887222 33333344677788888888888 6666666666665544443
No 185
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=26.93 E-value=3.2e+02 Score=21.53 Aligned_cols=77 Identities=10% Similarity=0.149 Sum_probs=54.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCceecccccCCCchHHHHHHHHhcCCCCceEEEecccccccCccccccCCCHHHHHHH
Q 025312 34 YSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSC 113 (255)
Q Consensus 34 ~~~~~~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~ 113 (255)
|......++..+-+..+-+.|+.++=.+. . +|+.++.+.+.. ++-...+.. +-+...
T Consensus 42 wd~~~~tpe~~~W~~e~k~~gi~v~vvSN--n---~e~RV~~~~~~l---~v~fi~~A~---------------KP~~~~ 98 (175)
T COG2179 42 WDNPDATPELRAWLAELKEAGIKVVVVSN--N---KESRVARAAEKL---GVPFIYRAK---------------KPFGRA 98 (175)
T ss_pred ccCCCCCHHHHHHHHHHHhcCCEEEEEeC--C---CHHHHHhhhhhc---CCceeeccc---------------CccHHH
Confidence 55555667899999999999999887665 2 799999987641 121222211 125677
Q ss_pred HHHHHhHcCCCcceEEeccc
Q 025312 114 CEASLKRLDVDYIDLYYQHR 133 (255)
Q Consensus 114 ~~~sL~~L~~d~iDl~~lH~ 133 (255)
+++.|+.|+.+.=.++++-.
T Consensus 99 fr~Al~~m~l~~~~vvmVGD 118 (175)
T COG2179 99 FRRALKEMNLPPEEVVMVGD 118 (175)
T ss_pred HHHHHHHcCCChhHEEEEcc
Confidence 88888999988777777764
No 186
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=26.91 E-value=1e+02 Score=26.62 Aligned_cols=47 Identities=23% Similarity=0.255 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHHhCCc
Q 025312 107 PDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKI 156 (255)
Q Consensus 107 ~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~v 156 (255)
.+...+.+++.+++||++ .|.+.-. ........+.+.+++|+++|.+
T Consensus 68 ~~~~~~~~~~~l~~LgI~-~D~~~~t--t~~~~~~~v~~i~~~L~ekG~i 114 (319)
T cd00814 68 CDKYHEIFKDLFKWLNIS-FDYFIRT--TSPRHKEIVQEFFKKLYENGYI 114 (319)
T ss_pred HHHHHHHHHHHHHHcCCc-CCCCeeC--CCHHHHHHHHHHHHHHHHCCCE
Confidence 456788889999999986 5743221 1111234678999999999998
No 187
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=26.86 E-value=3.9e+02 Score=23.60 Aligned_cols=97 Identities=10% Similarity=0.024 Sum_probs=60.1
Q ss_pred cccCCCHHHHHHHHHHHHhHcCCCcceEEeccc-CCCCCCHHHHHHHHHHHHHhCCc----ceEEcCCCCHH-HHHHHhh
Q 025312 101 VIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHR-VDTSVPIEETIGEMKKLVEEGKI----KYIGLSEASPG-TIRRAHA 174 (255)
Q Consensus 101 ~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~-~~~~~~~~~~~~~l~~l~~~G~v----r~iGvsn~~~~-~l~~~~~ 174 (255)
...+.+.+.|..++...-+. +.++-+.+-. =+|...++++.++++.+.+..-. |.|-||+.... .+.++.+
T Consensus 127 ~~rnLt~~EIl~Qv~~~~~~---~~i~nIvfmGmGEPL~N~d~vi~al~~l~~~~g~~~s~r~ItVsT~G~~~~i~~l~~ 203 (345)
T PRK14466 127 FTGNLTAAQILNQIYSLPER---DKLTNLVFMGMGEPLDNLDEVLKALEILTAPYGYGWSPKRITVSTVGLKKGLKRFLE 203 (345)
T ss_pred CCCCCCHHHHHHHHHhhhhc---CCCCeEEEeeeCcCcccHHHHHHHHHHHhhccccCcCCceEEEEcCCCchHHHHHhh
Confidence 34568999999998876322 2244444433 34445578899999999877444 68889888653 4777665
Q ss_pred cCCceEeeccCCcCCcChhhchhhhcc
Q 025312 175 VHPITAVQMEWSLWTRDIEEEIIPLCR 201 (255)
Q Consensus 175 ~~~~~~~q~~~n~~~~~~~~~~~~~~~ 201 (255)
..+ ..+.+..|..+.+....+++.++
T Consensus 204 ~~~-~~LavSLha~~~e~R~~i~P~~~ 229 (345)
T PRK14466 204 ESE-CHLAISLHSPFPEQRRELMPAEK 229 (345)
T ss_pred ccC-cEEEEEcCCCCHHHHHHhcCCcc
Confidence 443 34466666555443344555433
No 188
>cd08620 PI-PLCXDc_like_1 Catalytic domain of uncharacterized hypothetical proteins similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins. This subfamily corresponds to the catalytic domain present in a group of uncharacterized hypothetical proteins found in bacteria and fungi, which are similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins (PI-PLCXD). The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) has a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, eukaryotic PI-PLCXDs contain a single TIM-barrel type catalytic domain, X domain, and are more closely related to bacterial PI-PLCs, which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidyl
Probab=26.85 E-value=3.6e+02 Score=22.98 Aligned_cols=19 Identities=21% Similarity=0.438 Sum_probs=13.5
Q ss_pred HHHHHHHcCCCceeccccc
Q 025312 46 MIKHAFSKGITFFDTADVY 64 (255)
Q Consensus 46 ~l~~a~~~Gi~~~DtA~~Y 64 (255)
-+..=++.|||+||-=..|
T Consensus 35 ~i~~QL~~GiRyfDlRv~~ 53 (281)
T cd08620 35 NVSTQLALGARYFDFRPGY 53 (281)
T ss_pred cHHHHHhcCcEEEEEEeee
Confidence 3455678999999974433
No 189
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=26.57 E-value=4.2e+02 Score=22.91 Aligned_cols=116 Identities=10% Similarity=0.001 Sum_probs=70.8
Q ss_pred CHHHHHHHHHHHHHcCCCceecccccCC------CchHHH----------HHHHHhc--CCCCceEEEecccccccCccc
Q 025312 39 SEEDGISMIKHAFSKGITFFDTADVYGQ------NANEVL----------LGKALKQ--LPREKIQVATKFGIAGIGVAG 100 (255)
Q Consensus 39 ~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~------g~se~~----------lg~~l~~--~~R~~~~i~tK~~~~~~~~~~ 100 (255)
.++...++=+..+++|-..|.|=..-+. ..-|.. +.+...+ ..+.+.||.--+|+....-..
T Consensus 51 ~Pd~I~~IH~aY~eAGADiIeTNTFgat~i~lady~led~v~~in~~aa~iAR~aA~~~~~~k~rfVaGsiGPt~k~~~~ 130 (311)
T COG0646 51 KPDVIEAIHRAYIEAGADIIETNTFGATTIKLADYGLEDKVYEINQKAARIARRAADEAGDPKPRFVAGSIGPTNKTLSI 130 (311)
T ss_pred CcHHHHHHHHHHHhccCcEEEecCCCcchhhHhhhChHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEeccCcCCcCCc
Confidence 3455666666667999999988653222 112221 1111111 112567777777765531100
Q ss_pred cc-cCCCHHHHHHHHHHHHhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHHhC
Q 025312 101 VI-VKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG 154 (255)
Q Consensus 101 ~~-~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G 154 (255)
.. +..+.+.++++..++.+-|--.=+|++++.-..+......++.+.++..++.
T Consensus 131 ~~~~~v~fd~l~~ay~eq~~~Li~gG~D~iLiET~~D~l~~KaA~~a~~~~~~~~ 185 (311)
T COG0646 131 SPDFAVTFDELVEAYREQVEGLIDGGADLILIETIFDTLNAKAAVFAAREVFEEL 185 (311)
T ss_pred CCcccccHHHHHHHHHHHHHHHHhCCCcEEEEehhccHHHHHHHHHHHHHHHHhc
Confidence 01 2578999999999999888666789999987655444556677777766633
No 190
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=26.53 E-value=1.6e+02 Score=21.45 Aligned_cols=64 Identities=11% Similarity=0.060 Sum_probs=37.7
Q ss_pred cCCCHHHHHHHHHHHHhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHHhCCcceEEcCCCCHHHHHHHh
Q 025312 103 VKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAH 173 (255)
Q Consensus 103 ~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn~~~~~l~~~~ 173 (255)
.+.+.+.|.+.+++.|++.+++.-++-.|-.++...+-....+.-+++ . +.+-.|+.++|....
T Consensus 10 r~~~~~~i~~ai~~~l~~~~~~~~~i~~iasi~~K~~E~~l~~~A~~l----~---~~~~~~~~eeL~~~~ 73 (121)
T PF01890_consen 10 RGAPAEEIEEAIEQALAEAGLSPRSIAAIASIDIKADEPGLLELAEEL----G---IPLRFFSAEELNAVE 73 (121)
T ss_dssp SS--HHHHHHHHHHHHHHCT--GGGEEEEEESSSSS--HHHHHHHHHC----T---SEEEEE-HHHHHCHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCChhhccEEEeccccCCCHHHHHHHHHh----C---CCeEEECHHHHhcCC
Confidence 457899999999999999999877777777777655422222222222 1 445556677766543
No 191
>PRK08609 hypothetical protein; Provisional
Probab=26.51 E-value=5.6e+02 Score=24.30 Aligned_cols=105 Identities=17% Similarity=0.220 Sum_probs=57.0
Q ss_pred HHHHHHHHHHcCCCceecccccCC-----CchHHHHHHHH------hc-CCCCceEEEecccccccCccccccCCCHHHH
Q 025312 43 GISMIKHAFSKGITFFDTADVYGQ-----NANEVLLGKAL------KQ-LPREKIQVATKFGIAGIGVAGVIVKGAPDYV 110 (255)
Q Consensus 43 ~~~~l~~a~~~Gi~~~DtA~~Yg~-----g~se~~lg~~l------~~-~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i 110 (255)
..+++..|.+.|++.|=.++++.. |.+...+-..+ ++ ...=+++...-+... ++..
T Consensus 351 leemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~~~~~i~Il~GiEv~i~------------~~g~ 418 (570)
T PRK08609 351 IEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNEKYPEIDILSGIEMDIL------------PDGS 418 (570)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeec------------CCcc
Confidence 566999999999999877777521 22333232222 22 111122332222211 1111
Q ss_pred HHHHHHHHhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHHhCCcceEEcCC
Q 025312 111 RSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE 163 (255)
Q Consensus 111 ~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn 163 (255)
..-.+..|+. .||+ +.-+|++.. .+.++.++.+.++.+.|.+--||=-.
T Consensus 419 ~d~~~~~L~~--~D~v-I~SvH~~~~-~~~~~~~~~l~~a~~~~~~dILaHpd 467 (570)
T PRK08609 419 LDYDDEVLAE--LDYV-IAAIHSSFS-QSEEEIMKRLENACRNPYVRLIAHPT 467 (570)
T ss_pred hhhcHHHHHh--hCEE-EEEeecCCC-CCHHHHHHHHHHHhcCCCceEEECCC
Confidence 2222234443 4665 677786532 34567888899999888877665443
No 192
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=26.40 E-value=63 Score=20.59 Aligned_cols=17 Identities=12% Similarity=0.425 Sum_probs=14.9
Q ss_pred HHHHHHHHcCCCHHHHH
Q 025312 216 RIGNLAKKYNCTSAQLA 232 (255)
Q Consensus 216 ~l~~ia~~~~~s~~q~a 232 (255)
.+.+||+++|++..++-
T Consensus 24 ~lkdIA~~Lgvs~~tIr 40 (60)
T PF10668_consen 24 KLKDIAEKLGVSESTIR 40 (60)
T ss_pred cHHHHHHHHCCCHHHHH
Confidence 58999999999998864
No 193
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=26.14 E-value=2.7e+02 Score=22.05 Aligned_cols=34 Identities=3% Similarity=-0.098 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHHHHhHcCCCcceEEecccCCCC
Q 025312 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS 137 (255)
Q Consensus 104 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~ 137 (255)
.++.+.+...++.+++-+|.+++..+.+|.+...
T Consensus 126 ~~~~~~ll~p~~~~~~~~Gm~~~~~~~~~~~~~~ 159 (184)
T PRK04930 126 RYPMSDILRPFELTAAMCRMHWLSPIIIYWARRQ 159 (184)
T ss_pred CCCHHHHHHHHHHHHHHcCCeEcCcEEEecCCCC
Confidence 4688889999999999999999999999987643
No 194
>cd08557 PI-PLCc_bacteria_like Catalytic domain of bacterial phosphatidylinositol-specific phospholipase C and similar proteins. This subfamily corresponds to the catalytic domain present in bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) and their sequence homologs found in eukaryota. Bacterial PI-PLCs participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). Although their precise physiological function remains unclear, bacterial PI-PLCs may function as virulence factors in some pathogenic bacteria. Bacterial PI-PLCs contain a single TIM-barrel type catalytic domain. Its catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. Eukaryotic homologs in this family are named as phosphatidylinositol-specific phospholipase C X
Probab=25.96 E-value=2e+02 Score=23.80 Aligned_cols=20 Identities=20% Similarity=0.456 Sum_probs=14.9
Q ss_pred HHHHHHHHcCCCceeccccc
Q 025312 45 SMIKHAFSKGITFFDTADVY 64 (255)
Q Consensus 45 ~~l~~a~~~Gi~~~DtA~~Y 64 (255)
.-+...++.|||+||-=..+
T Consensus 41 ~~i~~QL~~GiR~~dlr~~~ 60 (271)
T cd08557 41 LSITDQLDAGVRYLDLRVAY 60 (271)
T ss_pred CCHHHHHhcCceEEEEEeee
Confidence 34577889999999855444
No 195
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=25.89 E-value=97 Score=23.02 Aligned_cols=28 Identities=18% Similarity=0.133 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHHHcCCCceecccccCC
Q 025312 39 SEEDGISMIKHAFSKGITFFDTADVYGQ 66 (255)
Q Consensus 39 ~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~ 66 (255)
+.+++.++++.|+++|..-.+-+..||.
T Consensus 81 s~eevd~~v~ka~eaGGk~~~~~~d~gf 108 (133)
T COG3607 81 SREEVDELVDKALEAGGKPANEPQDEGF 108 (133)
T ss_pred cHHHHHHHHHHHHHcCCCCCCCcccccc
Confidence 6799999999999999987766655553
No 196
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=25.83 E-value=4.6e+02 Score=23.03 Aligned_cols=109 Identities=15% Similarity=0.079 Sum_probs=65.6
Q ss_pred CCceEEEeccccccc------CccccccCCCHHHHHHHHHHHHhHcCC--CcceEEeccc-CCCCCCHHHHHHHHHHHHH
Q 025312 82 REKIQVATKFGIAGI------GVAGVIVKGAPDYVRSCCEASLKRLDV--DYIDLYYQHR-VDTSVPIEETIGEMKKLVE 152 (255)
Q Consensus 82 R~~~~i~tK~~~~~~------~~~~~~~~~~~~~i~~~~~~sL~~L~~--d~iDl~~lH~-~~~~~~~~~~~~~l~~l~~ 152 (255)
|..+.|+|-+|=... ...+...+.+.+.|..++......+|+ ..++-+.+-. =+|...++.+.++++.+.+
T Consensus 92 ~~t~cvSsq~GC~l~C~fC~tg~~g~~r~Lt~~EI~~qv~~~~~~~g~~~~~i~~Vvf~GmGEPlln~~~v~~~i~~l~~ 171 (343)
T PRK14468 92 RKTICVSTMVGCPAGCAFCATGAMGFGRNLTAAEILDQVLAVAGHEGISPREIRNVVLMGMGEPLLNYENVLKAARIMLH 171 (343)
T ss_pred CCEEEEEecCCCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhcCcCcCCccEEEEeccCccccCHHHHHHHHHHhcc
Confidence 566667666431110 111235678999999999877766664 2456555554 3455667889999998843
Q ss_pred -hCC---cceEEcCCCC-HHHHHHHhhcCCceEeeccCCcCCc
Q 025312 153 -EGK---IKYIGLSEAS-PGTIRRAHAVHPITAVQMEWSLWTR 190 (255)
Q Consensus 153 -~G~---vr~iGvsn~~-~~~l~~~~~~~~~~~~q~~~n~~~~ 190 (255)
.|. -+++.+|+.. +..++++.+......+.+..+-.+.
T Consensus 172 ~~g~~l~~r~itvST~G~~~~i~~L~~~~l~~~LaiSL~a~d~ 214 (343)
T PRK14468 172 PQALAMSPRRVTLSTVGIPKGIRRLAEEDLGVRLALSLHAPDE 214 (343)
T ss_pred cccccccCceEEEECCCChHHHHHHHHhCcCcEEEEEcCCCCH
Confidence 443 2678888874 4566676654322234455554444
No 197
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=25.80 E-value=50 Score=24.78 Aligned_cols=20 Identities=20% Similarity=0.277 Sum_probs=13.6
Q ss_pred HHHHHHHHcCCCceeccccc
Q 025312 45 SMIKHAFSKGITFFDTADVY 64 (255)
Q Consensus 45 ~~l~~a~~~Gi~~~DtA~~Y 64 (255)
..+...++.|+|+||-=-.+
T Consensus 30 ~~i~~QL~~GiR~lDlrv~~ 49 (146)
T PF00388_consen 30 WSIREQLESGIRYLDLRVWD 49 (146)
T ss_dssp HHHHHHHHTT--EEEEEEEE
T ss_pred HhHHHHHhccCceEEEEEEc
Confidence 56788999999999954433
No 198
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=25.79 E-value=1.9e+02 Score=24.60 Aligned_cols=61 Identities=16% Similarity=0.092 Sum_probs=44.2
Q ss_pred HHHHHHHHhHcCCCcceEEecccCCCCCCH---HHHHHHHHHHHHhCCcceEEcCCCCHHHHHHHhh
Q 025312 111 RSCCEASLKRLDVDYIDLYYQHRVDTSVPI---EETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHA 174 (255)
Q Consensus 111 ~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~---~~~~~~l~~l~~~G~vr~iGvsn~~~~~l~~~~~ 174 (255)
++.+.-.+.-++ ..+++++..|....|. .++|+.|.++.++|. +.|=+|+|..+.++.+.+
T Consensus 142 kqrl~ia~aL~~--~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~-~tvlissH~l~e~~~~~d 205 (293)
T COG1131 142 KQRLSIALALLH--DPELLILDEPTSGLDPESRREIWELLRELAKEGG-VTILLSTHILEEAEELCD 205 (293)
T ss_pred HHHHHHHHHHhc--CCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCC-cEEEEeCCcHHHHHHhCC
Confidence 333333333333 3688888888655543 478999999999996 578899999999988754
No 199
>TIGR03586 PseI pseudaminic acid synthase.
Probab=25.69 E-value=4.5e+02 Score=22.95 Aligned_cols=131 Identities=18% Similarity=0.216 Sum_probs=72.3
Q ss_pred CCHHHHHHHHHHHHHcCCCceecccccCC--------------Cc----hHHHHHHHHhcCCCCceEEEecccccccCcc
Q 025312 38 VSEEDGISMIKHAFSKGITFFDTADVYGQ--------------NA----NEVLLGKALKQLPREKIQVATKFGIAGIGVA 99 (255)
Q Consensus 38 ~~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~--------------g~----se~~lg~~l~~~~R~~~~i~tK~~~~~~~~~ 99 (255)
.+.++-.++.+.+-+.|+.++=|.-.-.. +. +-.++-..-+ ....++++|=.
T Consensus 74 l~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KI~S~~~~n~~LL~~va~--~gkPvilstG~-------- 143 (327)
T TIGR03586 74 TPWEWHKELFERAKELGLTIFSSPFDETAVDFLESLDVPAYKIASFEITDLPLIRYVAK--TGKPIIMSTGI-------- 143 (327)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEccCCHHHHHHHHHcCCCEEEECCccccCHHHHHHHHh--cCCcEEEECCC--------
Confidence 35677778889999999998854432210 00 1111111111 22233443322
Q ss_pred ccccCCCHHHHHHHHHHHHhHcCCCcceEEecccCCCC-CCHHH-HHHHHHHHHHhCCcceEEcCCCCHHHHHHHhhc-C
Q 025312 100 GVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS-VPIEE-TIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV-H 176 (255)
Q Consensus 100 ~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~-~~~~~-~~~~l~~l~~~G~vr~iGvsn~~~~~l~~~~~~-~ 176 (255)
.+.+.|..+++...+ -|. -|+.++|+.... .+.+. -+.++..|++.=. .-||+|.|+......+... .
T Consensus 144 -----~t~~Ei~~Av~~i~~-~g~--~~i~LlhC~s~YP~~~~~~nL~~i~~lk~~f~-~pVG~SDHt~G~~~~~aAva~ 214 (327)
T TIGR03586 144 -----ATLEEIQEAVEACRE-AGC--KDLVLLKCTSSYPAPLEDANLRTIPDLAERFN-VPVGLSDHTLGILAPVAAVAL 214 (327)
T ss_pred -----CCHHHHHHHHHHHHH-CCC--CcEEEEecCCCCCCCcccCCHHHHHHHHHHhC-CCEEeeCCCCchHHHHHHHHc
Confidence 477888888887753 342 478999986532 22222 3666777776544 4699999986543322221 2
Q ss_pred CceEeeccCCc
Q 025312 177 PITAVQMEWSL 187 (255)
Q Consensus 177 ~~~~~q~~~n~ 187 (255)
.-+++.-.+++
T Consensus 215 GA~iIEkH~tl 225 (327)
T TIGR03586 215 GACVIEKHFTL 225 (327)
T ss_pred CCCEEEeCCCh
Confidence 23455655555
No 200
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=25.48 E-value=2.4e+02 Score=25.20 Aligned_cols=116 Identities=15% Similarity=0.174 Sum_probs=58.5
Q ss_pred HcCCCcee-----cccccCCCchHHHHHHHHhcCCCCceEEEecccccccCc-cccccCCC----HHHHHHHHHHHHhHc
Q 025312 52 SKGITFFD-----TADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGV-AGVIVKGA----PDYVRSCCEASLKRL 121 (255)
Q Consensus 52 ~~Gi~~~D-----tA~~Yg~g~se~~lg~~l~~~~R~~~~i~tK~~~~~~~~-~~~~~~~~----~~~i~~~~~~sL~~L 121 (255)
+.++.-+| ++..+. .++-.+.+.++.....=.||-||+...-... ......++ -+.|++.+.+.|++-
T Consensus 109 ~~~~~~yD~fiii~s~rf~--~ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~ 186 (376)
T PF05049_consen 109 EVKFYRYDFFIIISSERFT--ENDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKA 186 (376)
T ss_dssp HTTGGG-SEEEEEESSS----HHHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCT
T ss_pred HccccccCEEEEEeCCCCc--hhhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHc
Confidence 44565555 233333 3788888888874445567899986421110 00011233 346788888899999
Q ss_pred CCCcceEEecccCCCC-CCHHHHHHHHH----HHHHhCCcceEEcCCCCHHHHHH
Q 025312 122 DVDYIDLYYQHRVDTS-VPIEETIGEMK----KLVEEGKIKYIGLSEASPGTIRR 171 (255)
Q Consensus 122 ~~d~iDl~~lH~~~~~-~~~~~~~~~l~----~l~~~G~vr~iGvsn~~~~~l~~ 171 (255)
|+....+|++-+.+.. .++....++|+ ..+....+ .-+.|.+.+.|++
T Consensus 187 gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~~fl--lsLp~is~~~I~k 239 (376)
T PF05049_consen 187 GVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRHAFL--LSLPNISEAAIEK 239 (376)
T ss_dssp T-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHHHHH--HHS---SHHHHHH
T ss_pred CCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHHHHH--HHhHHhhHHHHHH
Confidence 9999999999987754 35554444444 34443332 2345666555443
No 201
>PF11590 DNAPolymera_Pol: DNA polymerase catalytic subunit Pol; InterPro: IPR021639 This family of proteins represents the catalytic subunit, Pol, of the Herpes simplex virus DNA polymerase. Pol binds UL42, making up the DNA polymerase. UL42 is a processivity subunit which binds to the C-terminal of Pol in a similar way that the cell cycle regulator p21 binds to PCNA []. ; GO: 0003887 DNA-directed DNA polymerase activity, 0004523 ribonuclease H activity; PDB: 1DML_H.
Probab=25.39 E-value=59 Score=18.80 Aligned_cols=32 Identities=22% Similarity=0.469 Sum_probs=17.3
Q ss_pred cccceecccccCCCCCCCCCHHHHHHHHHHHHH
Q 025312 20 VSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFS 52 (255)
Q Consensus 20 vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~a~~ 52 (255)
++.-||.+.+.|...... .+++...-|..|++
T Consensus 7 l~~AgF~~i~~g~g~~~~-~eeEt~qkL~~AF~ 38 (41)
T PF11590_consen 7 LRSAGFATIGSGAGLPSS-EEEETRQKLRRAFD 38 (41)
T ss_dssp HHHTT-EEECTTS-------HHHHHHHHHHHHH
T ss_pred HHHHhHHHhccCccccch-hhHHHHHHHHHHHH
Confidence 455566666655433322 67778888888875
No 202
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=25.31 E-value=6e+02 Score=24.23 Aligned_cols=25 Identities=12% Similarity=0.078 Sum_probs=20.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCceecc
Q 025312 37 PVSEEDGISMIKHAFSKGITFFDTA 61 (255)
Q Consensus 37 ~~~~~~~~~~l~~a~~~Gi~~~DtA 61 (255)
.++.++..+++...-++|+..|+..
T Consensus 17 ~~~t~dkl~ia~~L~~~Gv~~IE~~ 41 (582)
T TIGR01108 17 RMRTEDMLPIAEKLDDVGYWSLEVW 41 (582)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEec
Confidence 3477888888888889999988874
No 203
>COG3287 Uncharacterized conserved protein [Function unknown]
Probab=25.17 E-value=1.1e+02 Score=27.36 Aligned_cols=54 Identities=20% Similarity=0.119 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHHhCCcceEEcCCC
Q 025312 109 YVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA 164 (255)
Q Consensus 109 ~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn~ 164 (255)
...+.+++.-++|+.+..|+.++=.+....+..++.++|.+.... +..||+|+-
T Consensus 14 d~~~v~~e~~~~~~~~~~~~~~ifF~~~~~~~~~l~~~l~~~~pg--~~liGCSTa 67 (379)
T COG3287 14 DAESVIEEMARQLGSDRSDFVLIFFSPERDEHVQLASALKQAFPG--ICLIGCSTA 67 (379)
T ss_pred CHHHHHHHHHHhhCcCCCCeEEEEeccccccHHHHHHHHHhhCCC--CeEeccccC
Confidence 356667778889999999999977776666566777777766654 778999854
No 204
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=25.16 E-value=4.9e+02 Score=23.66 Aligned_cols=106 Identities=18% Similarity=0.123 Sum_probs=60.0
Q ss_pred cccccCCCchHHHHHHHHhc----CCC-CceEEEecccccccCccccccCCCHHHHHHHHHHHHhHcCCCcceEEecccC
Q 025312 60 TADVYGQNANEVLLGKALKQ----LPR-EKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRV 134 (255)
Q Consensus 60 tA~~Yg~g~se~~lg~~l~~----~~R-~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~ 134 (255)
..-.|| .++-+-++|++ .++ +-++|.|-+...-- -+.+..-+++.-++++ +.++.+|.|
T Consensus 95 ~d~V~G---g~~~L~~aI~~~~~~~~p~~~I~V~~tC~~~li----------GdDi~~v~~~~~~~~~---~pvi~v~t~ 158 (443)
T TIGR01862 95 SDIVFG---GEKKLKKLIHEAFTEFPLIKAISVYATCPTGLI----------GDDIEAVAKEVSKEIG---KDVVAVNCP 158 (443)
T ss_pred cceeeC---cHHHHHHHHHHHHHhCCccceEEEECCChHHHh----------ccCHHHHHHHHHHhcC---CCEEEEecC
Confidence 344677 56677777776 344 56777776643321 1234444444334554 688999988
Q ss_pred CCCC-----CHHHHHHH-HHHHH--------HhCCcceEEcCCC--CHHHHHHHhhcCCceEe
Q 025312 135 DTSV-----PIEETIGE-MKKLV--------EEGKIKYIGLSEA--SPGTIRRAHAVHPITAV 181 (255)
Q Consensus 135 ~~~~-----~~~~~~~~-l~~l~--------~~G~vr~iGvsn~--~~~~l~~~~~~~~~~~~ 181 (255)
+... .+..+.++ ++.+. +.++|--||-.++ +.+.++++++...+.++
T Consensus 159 gf~g~~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gl~v~ 221 (443)
T TIGR01862 159 GFAGVSQSKGHHIANIAVINDKVGTREKEITTEYDVNIIGEYNIGGDAWVMRIYLEEMGIQVV 221 (443)
T ss_pred CccCCccchHHHHHHHHHHHHHhCCCCcccCCCCeEEEEccCcCcccHHHHHHHHHHcCCeEE
Confidence 7543 12333333 33343 2466777885554 44577888877665554
No 205
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.13 E-value=6.2e+02 Score=24.75 Aligned_cols=80 Identities=13% Similarity=0.130 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHHhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHHh--CCcceEEcCCCCHHHHHHHhhcCCceEee
Q 025312 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEE--GKIKYIGLSEASPGTIRRAHAVHPITAVQ 182 (255)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~--G~vr~iGvsn~~~~~l~~~~~~~~~~~~q 182 (255)
.+.+.|++-++.....-.....-+|+|+..+... .+.+++|.+..++ +.+.+|.++|.....+..+.+ -|.+
T Consensus 104 ~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls--~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrS----RCq~ 177 (700)
T PRK12323 104 RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT--NHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLS----RCLQ 177 (700)
T ss_pred CCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC--HHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHH----HHHh
Confidence 4556677766655443334456788888776543 3466777777766 889999999876544433332 2344
Q ss_pred ccCCcCCc
Q 025312 183 MEWSLWTR 190 (255)
Q Consensus 183 ~~~n~~~~ 190 (255)
+.|..+..
T Consensus 178 f~f~~ls~ 185 (700)
T PRK12323 178 FNLKQMPP 185 (700)
T ss_pred cccCCCCh
Confidence 45555443
No 206
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=25.08 E-value=4.9e+02 Score=23.46 Aligned_cols=111 Identities=17% Similarity=0.152 Sum_probs=60.6
Q ss_pred cccccCCCchHHHHHHHHhc----CCCCceEEEecccccccCccccccCCCHHHHHHHHHHHHhHcC-CCcceEEecccC
Q 025312 60 TADVYGQNANEVLLGKALKQ----LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLD-VDYIDLYYQHRV 134 (255)
Q Consensus 60 tA~~Yg~g~se~~lg~~l~~----~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~-~d~iDl~~lH~~ 134 (255)
....|| .|+.+-++|++ .+.+-++|.|-+.+..-+ -+ +..-+++.-++.. -..+.++.++.|
T Consensus 59 ~d~V~G---g~~~L~~~i~~~~~~~~p~~I~v~~tC~~~liG-------dD---i~~v~~~~~~~~~~~~~~~vi~v~tp 125 (428)
T cd01965 59 DAAVFG---GEDNLIEALKNLLSRYKPDVIGVLTTCLTETIG-------DD---VAGFIKEFRAEGPEPADFPVVYASTP 125 (428)
T ss_pred CCeeEC---cHHHHHHHHHHHHHhcCCCEEEEECCcchhhcC-------CC---HHHHHHHHHhhccCCCCCeEEEeeCC
Confidence 334566 46777777776 234456777765443211 12 3333333323221 013667888888
Q ss_pred CCCCC----HHHHHHHHHHH-------HHhCCcceEEcCCC---CHHHHHHHhhcCCceEeec
Q 025312 135 DTSVP----IEETIGEMKKL-------VEEGKIKYIGLSEA---SPGTIRRAHAVHPITAVQM 183 (255)
Q Consensus 135 ~~~~~----~~~~~~~l~~l-------~~~G~vr~iGvsn~---~~~~l~~~~~~~~~~~~q~ 183 (255)
+.... ++.++++|-+. ++.++|--||-++. +.+.++++++...+.++.+
T Consensus 126 gf~g~~~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~~ 188 (428)
T cd01965 126 SFKGSHETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPIIL 188 (428)
T ss_pred CCCCcHHHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEEe
Confidence 75532 23344444432 23456777876654 3578888888877666654
No 207
>PF13518 HTH_28: Helix-turn-helix domain
Probab=25.06 E-value=91 Score=18.26 Aligned_cols=22 Identities=9% Similarity=0.517 Sum_probs=17.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Q 025312 216 RIGNLAKKYNCTSAQLALAWVLG 238 (255)
Q Consensus 216 ~l~~ia~~~~~s~~q~al~~~l~ 238 (255)
.+.++|+++|+|..++ .+|+-.
T Consensus 14 s~~~~a~~~gis~~tv-~~w~~~ 35 (52)
T PF13518_consen 14 SVREIAREFGISRSTV-YRWIKR 35 (52)
T ss_pred CHHHHHHHHCCCHhHH-HHHHHH
Confidence 4778899999988775 777744
No 208
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=24.89 E-value=1.9e+02 Score=21.74 Aligned_cols=82 Identities=12% Similarity=0.038 Sum_probs=37.0
Q ss_pred HHHHHHHcCCCceeccc----ccCC---CchHHHHHHHHhcCCCCceEEEecccccccCc-cccccCCCHHHHHHHHHHH
Q 025312 46 MIKHAFSKGITFFDTAD----VYGQ---NANEVLLGKALKQLPREKIQVATKFGIAGIGV-AGVIVKGAPDYVRSCCEAS 117 (255)
Q Consensus 46 ~l~~a~~~Gi~~~DtA~----~Yg~---g~se~~lg~~l~~~~R~~~~i~tK~~~~~~~~-~~~~~~~~~~~i~~~~~~s 117 (255)
....+-..++-++|++. .|.. +..+..+-+..+. .+-+++|.......+..+ .....-..+..+.+.+.+.
T Consensus 66 ~~~~~~~~~~vi~Dr~~~d~~aY~~~~~~~~~~~l~~~~~~-~~yd~v~~l~~~~~~~~D~~R~~~~~~r~~~~~~~~~~ 144 (163)
T PF13521_consen 66 AEASAKSSDVVICDRGPLDTLAYSEFYFGDYPEELEREARL-SRYDLVFLLPPDPPWEQDGVRPEDPEERERIDELLKEL 144 (163)
T ss_dssp HHHHHH-SSEEEESS-HHHHHHHHHHHHS---HHHHHHHHH-S--SEEEEEE----------------SHHHHHHHHHHH
T ss_pred HHHhhcCCCcEEEeCChHHHHHHHHHhcCcchHHHHHHHHh-CCCCEEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHH
Confidence 33444567888999886 2311 2234444444442 445555555544333222 1112224677899999999
Q ss_pred HhHcCCCcceE
Q 025312 118 LKRLDVDYIDL 128 (255)
Q Consensus 118 L~~L~~d~iDl 128 (255)
|+++|..|+++
T Consensus 145 l~~~~~~~~~v 155 (163)
T PF13521_consen 145 LERHGIPYIIV 155 (163)
T ss_dssp HHGGG---EEE
T ss_pred HHHCCCeEEEe
Confidence 99999988775
No 209
>PRK10200 putative racemase; Provisional
Probab=24.79 E-value=3.7e+02 Score=22.01 Aligned_cols=63 Identities=19% Similarity=0.037 Sum_probs=44.9
Q ss_pred CCHHHHHHHHHHHHhHcCCCcceEEecccCCCC------------CCHHHHHHHHHHHHHhCCcceEEcCCCCHHH
Q 025312 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS------------VPIEETIGEMKKLVEEGKIKYIGLSEASPGT 168 (255)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~------------~~~~~~~~~l~~l~~~G~vr~iGvsn~~~~~ 168 (255)
.+.+.+++=++..-.+.+.+++|.+.+|.++-. .+.....+.++.|.+.| +..|-+.-.++..
T Consensus 14 aT~~~~~~i~~~t~a~~d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~L~~~g-~~~iviaCNTah~ 88 (230)
T PRK10200 14 STIPYYRLINEGIKQRLGGLHSAQLLLHSVDFHEIEECQRRGEWDKTGDILAEAALGLQRAG-AEGIVLCTNTMHK 88 (230)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCeEEEeCCChHHHHHHHHCCCcchHHHHHHHHHHHHHHcC-CCEEEECCchHHH
Confidence 456667777777777888899999999987421 12345677788888877 6778877666543
No 210
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=24.59 E-value=39 Score=26.77 Aligned_cols=15 Identities=47% Similarity=0.532 Sum_probs=11.1
Q ss_pred HHHhHcCCCcceEEe
Q 025312 116 ASLKRLDVDYIDLYY 130 (255)
Q Consensus 116 ~sL~~L~~d~iDl~~ 130 (255)
+.|+.||+||||=-=
T Consensus 87 qiLealgVD~IDESE 101 (208)
T PF01680_consen 87 QILEALGVDYIDESE 101 (208)
T ss_dssp HHHHHTT-SEEEEET
T ss_pred hhHHHhCCceecccc
Confidence 568999999999533
No 211
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=24.52 E-value=1.2e+02 Score=23.61 Aligned_cols=64 Identities=20% Similarity=0.212 Sum_probs=37.8
Q ss_pred HHHHHHHHHhHcCCCc----ceEEecccCCCCCCHHHHHHHHHHHHHhCCcceEEcCCCCHHHHHHHhhc
Q 025312 110 VRSCCEASLKRLDVDY----IDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV 175 (255)
Q Consensus 110 i~~~~~~sL~~L~~d~----iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn~~~~~l~~~~~~ 175 (255)
.++.++..++++|.+. ++.+.-.+ .....+.++.+.|+.|+++| ++-.-+||.+...+...++.
T Consensus 61 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~L~~~g-~~~~i~Sn~~~~~~~~~l~~ 128 (198)
T TIGR01428 61 TREALRYLLGRLGLEDDESAADRLAEAY-LRLPPHPDVPAGLRALKERG-YRLAILSNGSPAMLKSLVKH 128 (198)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHH-hcCCCCCCHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHHH
Confidence 3556677777777652 11111111 11123356778889999888 45566788887777766654
No 212
>COG0218 Predicted GTPase [General function prediction only]
Probab=24.44 E-value=3.8e+02 Score=21.64 Aligned_cols=98 Identities=14% Similarity=-0.020 Sum_probs=64.1
Q ss_pred HHHHHHHHHHc------CCCceecccccCCCchHHHHHHHHhcCCCCceEEEecccccccCccccccCCCHHHHHHHHHH
Q 025312 43 GISMIKHAFSK------GITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEA 116 (255)
Q Consensus 43 ~~~~l~~a~~~------Gi~~~DtA~~Yg~g~se~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (255)
-.+++...++. .+-++|.-..-- ..+..+=++|.+....=+++.||..- .......+.+..
T Consensus 93 w~~~i~~YL~~R~~L~~vvlliD~r~~~~--~~D~em~~~l~~~~i~~~vv~tK~DK-----------i~~~~~~k~l~~ 159 (200)
T COG0218 93 WKKLIEEYLEKRANLKGVVLLIDARHPPK--DLDREMIEFLLELGIPVIVVLTKADK-----------LKKSERNKQLNK 159 (200)
T ss_pred HHHHHHHHHhhchhheEEEEEEECCCCCc--HHHHHHHHHHHHcCCCeEEEEEcccc-----------CChhHHHHHHHH
Confidence 45555555433 445667543322 25667778888766777899999843 345567777888
Q ss_pred HHhHcCCCcceE--EecccCCCCCCHHHHHHHHHHHHHh
Q 025312 117 SLKRLDVDYIDL--YYQHRVDTSVPIEETIGEMKKLVEE 153 (255)
Q Consensus 117 sL~~L~~d~iDl--~~lH~~~~~~~~~~~~~~l~~l~~~ 153 (255)
..+.|+.+..|- +.+........++++++.+.+....
T Consensus 160 v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 160 VAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred HHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 888888776665 4444444455688888888876653
No 213
>PF15221 LEP503: Lens epithelial cell protein LEP503
Probab=24.31 E-value=39 Score=20.89 Aligned_cols=19 Identities=26% Similarity=0.296 Sum_probs=16.1
Q ss_pred eeeeCCCCcccccceeccc
Q 025312 10 RVKLGTQGLEVSKLGYGCM 28 (255)
Q Consensus 10 ~~~lg~~g~~vs~lg~Gt~ 28 (255)
.+.|+.+|++||.+-+||+
T Consensus 17 ~~~l~dtglrvpv~KmGtg 35 (61)
T PF15221_consen 17 GRALRDTGLRVPVIKMGTG 35 (61)
T ss_pred cccccccccCCceeeecch
Confidence 4578899999999988885
No 214
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=24.02 E-value=5.1e+02 Score=22.98 Aligned_cols=106 Identities=18% Similarity=0.135 Sum_probs=61.7
Q ss_pred ccccCCCchHHHHHHHHhc----CCCCceEEEecccccccCccccccCCCHHHHHHHHHHHHhHcCCCcceEEecccCCC
Q 025312 61 ADVYGQNANEVLLGKALKQ----LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDT 136 (255)
Q Consensus 61 A~~Yg~g~se~~lg~~l~~----~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~ 136 (255)
.-.|| .|+-+-+++++ ...+-++|.|-+.+..-+ -+ +..-+++.-++.+ +.++.+|-|+.
T Consensus 66 d~V~G---g~~~L~~~i~~~~~~~~P~~i~v~~tC~~~~iG-------dD---i~~v~~~~~~~~~---~~vi~v~t~gf 129 (406)
T cd01967 66 DIVFG---GEKKLKKAIKEAYERFPPKAIFVYSTCPTGLIG-------DD---IEAVAKEASKELG---IPVIPVNCEGF 129 (406)
T ss_pred ceeeC---cHHHHHHHHHHHHHhCCCCEEEEECCCchhhhc-------cC---HHHHHHHHHHhhC---CCEEEEeCCCe
Confidence 34566 47777777776 234457777765443211 13 3333333334444 78899998854
Q ss_pred CC-----CHHHHHHHHHHHH---------HhCCcceEEcCCC--CHHHHHHHhhcCCceEee
Q 025312 137 SV-----PIEETIGEMKKLV---------EEGKIKYIGLSEA--SPGTIRRAHAVHPITAVQ 182 (255)
Q Consensus 137 ~~-----~~~~~~~~l~~l~---------~~G~vr~iGvsn~--~~~~l~~~~~~~~~~~~q 182 (255)
.. .++.++++|.+.. +.+.|--||..++ +.++++++++...+.++-
T Consensus 130 ~g~~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gi~~~~ 191 (406)
T cd01967 130 RGVSQSLGHHIANDAILDHLVGTKEPEEKTPYDVNIIGEYNIGGDAWVIKPLLEELGIRVNA 191 (406)
T ss_pred eCCcccHHHHHHHHHHHHHhcCCCCcCCCCCCeEEEEeccccchhHHHHHHHHHHcCCEEEE
Confidence 33 2445566655443 2355777888766 346788888876665553
No 215
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=24.02 E-value=84 Score=17.72 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=12.9
Q ss_pred HHHHHHHHHcCCCHHHHH
Q 025312 215 FRIGNLAKKYNCTSAQLA 232 (255)
Q Consensus 215 ~~l~~ia~~~~~s~~q~a 232 (255)
+.+..||++++++..++.
T Consensus 7 Dtl~~IA~~~~~~~~~l~ 24 (44)
T PF01476_consen 7 DTLWSIAKRYGISVDELM 24 (44)
T ss_dssp --HHHHHHHTTS-HHHHH
T ss_pred CcHHHHHhhhhhhHhHHH
Confidence 568899999999988854
No 216
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=23.95 E-value=1.4e+02 Score=22.19 Aligned_cols=43 Identities=12% Similarity=0.056 Sum_probs=30.3
Q ss_pred HHHHHHHHhHcCCCcceEEecccCCCCC-CHHHHHHHHHHHHHh
Q 025312 111 RSCCEASLKRLDVDYIDLYYQHRVDTSV-PIEETIGEMKKLVEE 153 (255)
Q Consensus 111 ~~~~~~sL~~L~~d~iDl~~lH~~~~~~-~~~~~~~~l~~l~~~ 153 (255)
+..+++.|+.+.-..+|.++++..|... ...+....++.|.+.
T Consensus 54 Rp~l~~ll~~~~~g~vd~vvv~~ldRl~R~~~d~~~~~~~l~~~ 97 (140)
T cd03770 54 RPGFNRMIEDIEAGKIDIVIVKDMSRLGRNYLKVGLYMEILFPK 97 (140)
T ss_pred CHHHHHHHHHHHcCCCCEEEEeccchhccCHHHHHHHHHHHHhh
Confidence 4556666666666789999998887653 345667777777777
No 217
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=23.88 E-value=1.2e+02 Score=27.96 Aligned_cols=49 Identities=16% Similarity=0.232 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHHhCCcce
Q 025312 107 PDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKY 158 (255)
Q Consensus 107 ~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~vr~ 158 (255)
.+...+.+.+.|++||++ .|.+. ........+.+.+.+.+|+++|.+-.
T Consensus 69 ~~~~~~~~~~~l~~l~I~-~D~~~--~t~~~~~~~~v~~~~~~L~~~G~iY~ 117 (511)
T PRK11893 69 ADRNSAAFKRLWEALNIS-YDDFI--RTTDPRHKEAVQEIFQRLLANGDIYL 117 (511)
T ss_pred HHHHHHHHHHHHHHhCCC-cCCce--eCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 345778899999999997 57431 12221235678899999999999643
No 218
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=23.80 E-value=1.5e+02 Score=21.80 Aligned_cols=36 Identities=11% Similarity=0.100 Sum_probs=28.2
Q ss_pred cCCCHHHHHHHHHHHHhHcCCCcceEEecccCCCCC
Q 025312 103 VKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSV 138 (255)
Q Consensus 103 ~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~ 138 (255)
.+.+++.|.+.+++.|+..+++.-++-.+..++...
T Consensus 12 ~~~~~e~i~~ai~~~L~~~~l~~~si~~lasi~~K~ 47 (126)
T PRK07027 12 RGVPAEQIEAAIRAALAQRPLASADVRVVATLDLKA 47 (126)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCHHHhheeEehhhhc
Confidence 347899999999999999998766666666665543
No 219
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=23.76 E-value=4.3e+02 Score=24.85 Aligned_cols=58 Identities=17% Similarity=0.160 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHHhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHHhCCcceEEcCCCCHHHHH
Q 025312 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIR 170 (255)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn~~~~~l~ 170 (255)
........++.+.|+-||+++ |-. .-....++...+++++|.++|+. + +|..+.++++
T Consensus 57 R~~~e~~~~I~~dL~WLGl~w-D~~----~~qSdr~~~y~~~a~~Li~~G~A-Y--~C~cs~eel~ 114 (523)
T PLN03233 57 KEKAEFEESIIEDLGKIEIKP-DSV----SFTSDYFEPIRCYAIILIEEGLA-Y--MDDTPQEEMK 114 (523)
T ss_pred ccchHHHHHHHHHHHHhCCCC-CCC----ccccccHHHHHHHHHHHHHcCCe-E--ecCCCHHHHH
Confidence 455677888999999999885 521 12234467788999999999985 2 3445555554
No 220
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=23.66 E-value=4.5e+02 Score=22.20 Aligned_cols=128 Identities=14% Similarity=0.143 Sum_probs=71.0
Q ss_pred CCHHHHHHHHHHHHHcCCCceecccccCCCc------hHHHHHHHHhcCCCCceEEEecccccccCccccccCCCHHHHH
Q 025312 38 VSEEDGISMIKHAFSKGITFFDTADVYGQNA------NEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVR 111 (255)
Q Consensus 38 ~~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~g~------se~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~ 111 (255)
.+.++..++++.+.+.|+..|.- .| |+ -.+++.. +++..-+++.|+|.. . .+
T Consensus 40 ls~eei~~~i~~~~~~gi~~I~~---tG-GEPll~~~l~~iv~~-l~~~g~~~v~i~TNG-~---------------ll- 97 (302)
T TIGR02668 40 LSPEEIERIVRVASEFGVRKVKI---TG-GEPLLRKDLIEIIRR-IKDYGIKDVSMTTNG-I---------------LL- 97 (302)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEE---EC-cccccccCHHHHHHH-HHhCCCceEEEEcCc-h---------------HH-
Confidence 57888999999999999987763 33 21 1222322 222111255666642 1 11
Q ss_pred HHHHHHHhHcCCCcceEEecccCCCC--------CCHHHHHHHHHHHHHhCCc----ceEEcCCCCHHHHHHHhhc---C
Q 025312 112 SCCEASLKRLDVDYIDLYYQHRVDTS--------VPIEETIGEMKKLVEEGKI----KYIGLSEASPGTIRRAHAV---H 176 (255)
Q Consensus 112 ~~~~~sL~~L~~d~iDl~~lH~~~~~--------~~~~~~~~~l~~l~~~G~v----r~iGvsn~~~~~l~~~~~~---~ 176 (255)
...-..|.+.|++.|- +-++.+++. ..++.+++.++.+++.|.. ..+.+.+.+.+++.++++. .
T Consensus 98 ~~~~~~l~~~g~~~v~-iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i~~v~~~g~n~~ei~~~~~~~~~~ 176 (302)
T TIGR02668 98 EKLAKKLKEAGLDRVN-VSLDTLDPEKYKKITGRGALDRVIEGIESAVDAGLTPVKLNMVVLKGINDNEIPDMVEFAAEG 176 (302)
T ss_pred HHHHHHHHHCCCCEEE-EEecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 1223345666766554 334544321 2477899999999999852 2344444666666665543 4
Q ss_pred CceEeeccCCcC
Q 025312 177 PITAVQMEWSLW 188 (255)
Q Consensus 177 ~~~~~q~~~n~~ 188 (255)
++.+.-+++.+.
T Consensus 177 g~~~~~ie~~p~ 188 (302)
T TIGR02668 177 GAILQLIELMPP 188 (302)
T ss_pred CCEEEEEEEeEC
Confidence 444444444443
No 221
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=23.64 E-value=4.6e+02 Score=22.31 Aligned_cols=69 Identities=19% Similarity=0.137 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHhHcCC--------------------------CcceEEecccCCCC-CC--HHHHHHHHHHHHHhCC
Q 025312 105 GAPDYVRSCCEASLKRLDV--------------------------DYIDLYYQHRVDTS-VP--IEETIGEMKKLVEEGK 155 (255)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~--------------------------d~iDl~~lH~~~~~-~~--~~~~~~~l~~l~~~G~ 155 (255)
.....++..++.-|+|+++ -..|++.|..|-.- .+ .+-+-++..+++++|.
T Consensus 102 m~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~Ga 181 (300)
T COG4152 102 MPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGA 181 (300)
T ss_pred CcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCC
Confidence 5677788888888888875 22344444444221 12 2334577889999999
Q ss_pred cceEEcCCCCHHHHHHHhhc
Q 025312 156 IKYIGLSEASPGTIRRAHAV 175 (255)
Q Consensus 156 vr~iGvsn~~~~~l~~~~~~ 175 (255)
.|=+|+|..++++++++.
T Consensus 182 --tIifSsH~Me~vEeLCD~ 199 (300)
T COG4152 182 --TIIFSSHRMEHVEELCDR 199 (300)
T ss_pred --EEEEecchHHHHHHHhhh
Confidence 689999999999998765
No 222
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=23.60 E-value=4.9e+02 Score=22.61 Aligned_cols=132 Identities=18% Similarity=0.085 Sum_probs=84.2
Q ss_pred CHHHHHHHHHHHHHcCCCceeccccc--------CCC----chHHHHHHHHhcC---CCCceEEEecccccccCcccccc
Q 025312 39 SEEDGISMIKHAFSKGITFFDTADVY--------GQN----ANEVLLGKALKQL---PREKIQVATKFGIAGIGVAGVIV 103 (255)
Q Consensus 39 ~~~~~~~~l~~a~~~Gi~~~DtA~~Y--------g~g----~se~~lg~~l~~~---~R~~~~i~tK~~~~~~~~~~~~~ 103 (255)
+++...+.-..+-+.|+..||-=-.. |.| .+.+.+.+.+++. .. ++-|+.|.-..+.
T Consensus 77 dp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~-~iPVTVKiRlG~d------- 148 (323)
T COG0042 77 DPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVG-DIPVTVKIRLGWD------- 148 (323)
T ss_pred CHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhC-CCCeEEEEecccC-------
Confidence 56778888888899999999832111 112 2466677777651 12 6788888743321
Q ss_pred CCCHHHHHHHHHHHHhHcCCCcceEEecccCCCCCCH--HHHHHHHHHHHHhCC-cceEEcCC-CCHHHHHHHhhcCCce
Q 025312 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPI--EETIGEMKKLVEEGK-IKYIGLSE-ASPGTIRRAHAVHPIT 179 (255)
Q Consensus 104 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~--~~~~~~l~~l~~~G~-vr~iGvsn-~~~~~l~~~~~~~~~~ 179 (255)
+.+.....+.+.++.-| +|.+.+|.-...... ..-|+.+.++++.=. +--||=.+ ++++...+.++....|
T Consensus 149 --~~~~~~~~ia~~~~~~g---~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~D 223 (323)
T COG0042 149 --DDDILALEIARILEDAG---ADALTVHGRTRAQGYLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGAD 223 (323)
T ss_pred --cccccHHHHHHHHHhcC---CCEEEEecccHHhcCCCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCC
Confidence 11124445666677777 577889975432211 135888888888766 65555544 5888888888877667
Q ss_pred Eeec
Q 025312 180 AVQM 183 (255)
Q Consensus 180 ~~q~ 183 (255)
-+++
T Consensus 224 gVMi 227 (323)
T COG0042 224 GVMI 227 (323)
T ss_pred EEEE
Confidence 7766
No 223
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=23.42 E-value=5e+02 Score=22.59 Aligned_cols=115 Identities=12% Similarity=0.081 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHHHcCCCceecccccCCCchHHHH----HHHHhcC--CCCceEEEecccccccCccccccCCCHHHHH
Q 025312 38 VSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLL----GKALKQL--PREKIQVATKFGIAGIGVAGVIVKGAPDYVR 111 (255)
Q Consensus 38 ~~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~g~se~~l----g~~l~~~--~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~ 111 (255)
.+.++..++++.+.+.|+..+.- .| | |.++ -+.++.. ..-.+.|+|-.. ..+.+.+
T Consensus 37 l~~e~~~~ii~~~~~~g~~~v~~---~G-G--EPll~~~~~~ii~~~~~~g~~~~l~TNG~-----------ll~~e~~- 98 (358)
T TIGR02109 37 LTTEEWTDVLTQAAELGVLQLHF---SG-G--EPLARPDLVELVAHARRLGLYTNLITSGV-----------GLTEARL- 98 (358)
T ss_pred CCHHHHHHHHHHHHhcCCcEEEE---eC-c--cccccccHHHHHHHHHHcCCeEEEEeCCc-----------cCCHHHH-
Confidence 47788899999999999877752 33 2 2222 2222221 112345555421 1233333
Q ss_pred HHHHHHHhHcCCCcceEEecccCCCC---------CCHHHHHHHHHHHHHhCCc--ceEEcCCCCHHHHHHHhhc
Q 025312 112 SCCEASLKRLDVDYIDLYYQHRVDTS---------VPIEETIGEMKKLVEEGKI--KYIGLSEASPGTIRRAHAV 175 (255)
Q Consensus 112 ~~~~~sL~~L~~d~iDl~~lH~~~~~---------~~~~~~~~~l~~l~~~G~v--r~iGvsn~~~~~l~~~~~~ 175 (255)
+.|...|++.|. +-|+.+++. ..++.+.+.++.+++.|.- -.+.++..+.+++.++.+.
T Consensus 99 ----~~L~~~g~~~v~-iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~~v~v~~vv~~~N~~~l~~~~~~ 168 (358)
T TIGR02109 99 ----DALADAGLDHVQ-LSFQGVDEALADRIAGYKNAFEQKLAMARAVKAAGLPLTLNFVIHRHNIDQIPEIIEL 168 (358)
T ss_pred ----HHHHhCCCCEEE-EeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHH
Confidence 234455655543 233444321 1256678888888888742 1234456677777665443
No 224
>PRK01732 rnpA ribonuclease P; Reviewed
Probab=23.26 E-value=2.9e+02 Score=19.88 Aligned_cols=63 Identities=17% Similarity=0.201 Sum_probs=39.1
Q ss_pred CCCceEEEec-ccccccCccccccCCCHHHHHHHHHHHHhHcC--CCcceEEecccCCC-CCCHHHHHHHHHHHHHh
Q 025312 81 PREKIQVATK-FGIAGIGVAGVIVKGAPDYVRSCCEASLKRLD--VDYIDLYYQHRVDT-SVPIEETIGEMKKLVEE 153 (255)
Q Consensus 81 ~R~~~~i~tK-~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~--~d~iDl~~lH~~~~-~~~~~~~~~~l~~l~~~ 153 (255)
+|=-+.|+-| ++.. ..+..+++.+.++.+.+. +...|++++-.+.. +.+..++.+.|..+.+.
T Consensus 45 ~R~G~~VsKK~~g~A----------V~RNriKR~lRe~~R~~~~~l~~~diVviar~~~~~~~~~~l~~~l~~ll~k 111 (114)
T PRK01732 45 PRLGLTVAKKNVKRA----------HERNRIKRLTRESFRLHQHELPAMDFVVIAKKGVADLDNRELFELLEKLWRR 111 (114)
T ss_pred cEEEEEEEcccCcch----------hHHHHHHHHHHHHHHHhhhcCCCCeEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 4444666666 4422 345566666666665442 23469999977764 35677888888777654
No 225
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=23.23 E-value=2.2e+02 Score=21.31 Aligned_cols=55 Identities=22% Similarity=0.180 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHHHhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHHhCCcceEEcCCC
Q 025312 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA 164 (255)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn~ 164 (255)
.+.+.+...+++..+.- -+.-.+=..|...++..+.+.|..+++.|. ..+|+.+-
T Consensus 81 v~~~~L~~~L~~~~~~~----~~~~V~I~aD~~~~~~~vv~vmd~l~~aG~-~~v~l~t~ 135 (141)
T PRK11267 81 VTDETMITALDALTEGK----KDTTIFFRADKTVDYETLMKVMDTLHQAGY-LKIGLVGE 135 (141)
T ss_pred ccHHHHHHHHHHHHhcC----CCceEEEEcCCCCCHHHHHHHHHHHHHcCC-CeEEEEec
Confidence 45566666666544432 222222345777889999999999999994 56888653
No 226
>PLN00200 argininosuccinate synthase; Provisional
Probab=23.21 E-value=5.6e+02 Score=23.16 Aligned_cols=111 Identities=13% Similarity=0.001 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHcCCCc---eecccccCCCchHHHHHHHHhcCCC-CceEEEecccccccCccccccCCCHHHHHHHHHH
Q 025312 41 EDGISMIKHAFSKGITF---FDTADVYGQNANEVLLGKALKQLPR-EKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEA 116 (255)
Q Consensus 41 ~~~~~~l~~a~~~Gi~~---~DtA~~Yg~g~se~~lg~~l~~~~R-~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (255)
++...+-..|.+.|+.+ +|.-..| .+..+-.+++.... +.-|...+. .++..|.+.+-+
T Consensus 45 ~el~~a~~~A~~lGi~~~~v~dl~~ef----~~~~i~p~i~~Na~ye~~Y~~~ts-------------l~Rp~i~~~lv~ 107 (404)
T PLN00200 45 EELEGLEAKAKASGAKQLVVKDLREEF----VRDYIFPCLRANAIYEGKYLLGTS-------------MARPLIAKAMVD 107 (404)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCHHHH----HHhhcCHHHHcCCcccceeccccc-------------hhhHHHHHHHHH
Confidence 45666667777888754 3544444 34455555554322 333332221 355567777777
Q ss_pred HHhHcCCCcceEEecccCCC----CCCHHHHHHHHH-HHHHhCCcceEEcCCC-CHHHHHHHhhc
Q 025312 117 SLKRLDVDYIDLYYQHRVDT----SVPIEETIGEMK-KLVEEGKIKYIGLSEA-SPGTIRRAHAV 175 (255)
Q Consensus 117 sL~~L~~d~iDl~~lH~~~~----~~~~~~~~~~l~-~l~~~G~vr~iGvsn~-~~~~l~~~~~~ 175 (255)
..+.+|.++ ..|.-.. ...++..+.+|. ++ +.+.-++-.++ +-+.+.++.+.
T Consensus 108 ~A~~~G~~~----VahG~tgkGnDq~rf~~~~~al~pel---~ViaPlre~~~~~r~e~~~~A~~ 165 (404)
T PLN00200 108 IAKEVGADA----VAHGATGKGNDQVRFELTFFALNPEL---KVVAPWREWDIKGREDLIEYAKK 165 (404)
T ss_pred HHHHcCCCE----EEeCCcCCCCcHHHHHHHHHHhCCCC---eeeCchhhcCCCCHHHHHHHHHH
Confidence 778888773 4665532 223444455554 33 44444555555 35555555543
No 227
>PLN02907 glutamate-tRNA ligase
Probab=23.18 E-value=3.8e+02 Score=26.31 Aligned_cols=61 Identities=20% Similarity=0.267 Sum_probs=42.7
Q ss_pred cCCCHHHHHHHHHHHHhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHHhCCcceEEcCCCCHHHHHH
Q 025312 103 VKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRR 171 (255)
Q Consensus 103 ~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn~~~~~l~~ 171 (255)
+.........++.+.|+-||+++ |-. .-....++...+..++|.++|+. + +|..+.+++++
T Consensus 257 p~r~~~e~~~~I~~dl~wLG~~~-d~~----~~qS~r~~~y~~~a~~Li~~G~a--Y-~~~~~~~~~~~ 317 (722)
T PLN02907 257 PSKESDEFVENILKDIETLGIKY-DAV----TYTSDYFPQLMEMAEKLIKEGKA--Y-VDDTPREQMRK 317 (722)
T ss_pred CCcCChHHHHHHHHHHHHcCCCC-CCc----ccccccHHHHHHHHHHHHHcCCe--e-ecCCCHHHHHH
Confidence 44566678889999999999986 421 11234466788999999999995 3 35666666554
No 228
>PRK06233 hypothetical protein; Provisional
Probab=23.01 E-value=2.1e+02 Score=25.37 Aligned_cols=110 Identities=19% Similarity=0.247 Sum_probs=55.2
Q ss_pred HHHHHHHHHcCCCce---ecccccCCC-----------c--h----HH---HHHHHHhcCCCCceEEEecccccccCccc
Q 025312 44 ISMIKHAFSKGITFF---DTADVYGQN-----------A--N----EV---LLGKALKQLPREKIQVATKFGIAGIGVAG 100 (255)
Q Consensus 44 ~~~l~~a~~~Gi~~~---DtA~~Yg~g-----------~--s----e~---~lg~~l~~~~R~~~~i~tK~~~~~~~~~~ 100 (255)
.+-+....++|+++| |++..|... . - +. ++-++++ ...+++.|.+.++..... +.
T Consensus 174 ~~Ei~~L~~aG~~~IQiDeP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~-~~p~d~~i~~H~C~Gn~~-~~ 251 (372)
T PRK06233 174 HDTIQHFYDLGARYIQLDDTTWAYLISKLNDTENDPKEHQKYVKLAEDAVYVINKALA-DLPEDLTVTTHICRGNFK-ST 251 (372)
T ss_pred HHHHHHHHHCCCCEEEEcCCCHHhhhccccccccchhhhhhHHHHHHHHHHHHHHHHh-CCCcCCEEEEEeeCCCCC-Cc
Confidence 334445568899876 565454320 0 0 11 3444444 356688999998854222 12
Q ss_pred cccCCCHHHHHHHHHHHHhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHHh--CCcceEEcCCCC
Q 025312 101 VIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEE--GKIKYIGLSEAS 165 (255)
Q Consensus 101 ~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~--G~vr~iGvsn~~ 165 (255)
+....+.+.|. ..|.++++ |.|.|-..+... +-++.|.++.+. ++.-.+||-+..
T Consensus 252 ~~~~g~y~~i~----~~l~~~~v---d~~~lE~~~~r~---~~~~~L~~~~~~~~~k~v~lGvid~~ 308 (372)
T PRK06233 252 YLFSGGYEPVA----KYLGQLNY---DGFFLEYDNDRS---GSFEPLKQIWNNRDNVRIVLGLITSK 308 (372)
T ss_pred ccccCcHHHHH----HHHHhCCC---CEEEEecCCCcc---CccchHHHhhccCCCCEEEeeeecCC
Confidence 33334555554 34456765 555555433221 122333333332 566678887663
No 229
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=22.95 E-value=4.6e+02 Score=22.07 Aligned_cols=102 Identities=15% Similarity=0.090 Sum_probs=63.7
Q ss_pred CCHHHHHHHHHHHHH--cCCCceecccccCCCchHHHHHHHHhcCCCCceEEEecccccccCccccccCCCHHHHHHHHH
Q 025312 38 VSEEDGISMIKHAFS--KGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCE 115 (255)
Q Consensus 38 ~~~~~~~~~l~~a~~--~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (255)
.++++..++++.|.+ .|+.-+=+.+.| =+...+.|+......+-|+|=++++.+. .+.+.-....+
T Consensus 23 ~T~~~I~~lc~eA~~~~~~faaVcV~P~~-----v~~a~~~L~~~~~~~vkv~tVigFP~G~-------~~t~~K~~Ea~ 90 (257)
T PRK05283 23 DTDEKVIALCHQAKTPVGNTAAICIYPRF-----IPIARKTLREQGTPEIRIATVTNFPHGN-------DDIDIALAETR 90 (257)
T ss_pred CCHHHHHHHHHHHHhcCCCeeEEEECHHH-----HHHHHHHhcccCCCCCeEEEEecCCCCC-------CcHHHHHHHHH
Confidence 478999999999999 577666555544 2344444542111157788878766533 45555566666
Q ss_pred HHHhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHH
Q 025312 116 ASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVE 152 (255)
Q Consensus 116 ~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~ 152 (255)
..+++ |.|-||+++==..-...+++.+.+.+.+.++
T Consensus 91 ~Ai~~-GAdEiD~Vinig~lk~g~~~~v~~ei~~v~~ 126 (257)
T PRK05283 91 AAIAY-GADEVDVVFPYRALMAGNEQVGFELVKACKE 126 (257)
T ss_pred HHHHc-CCCEEeeeccHHHHhCCcHHHHHHHHHHHHH
Confidence 67664 9999998753222223456666666666665
No 230
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=22.93 E-value=6.8e+02 Score=23.97 Aligned_cols=24 Identities=8% Similarity=0.077 Sum_probs=18.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCceec
Q 025312 37 PVSEEDGISMIKHAFSKGITFFDT 60 (255)
Q Consensus 37 ~~~~~~~~~~l~~a~~~Gi~~~Dt 60 (255)
..+.++...+....-+.|+..++.
T Consensus 23 r~~~~d~l~ia~~ld~~G~~siE~ 46 (593)
T PRK14040 23 RLRLDDMLPIAAKLDKVGYWSLES 46 (593)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEe
Confidence 346777888888888889988876
No 231
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=22.91 E-value=1e+02 Score=26.91 Aligned_cols=46 Identities=24% Similarity=0.259 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhHcCC--CcceEEecccCCCCCCHHHHHHHHHHHHHhCCcc
Q 025312 109 YVRSCCEASLKRLDV--DYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK 157 (255)
Q Consensus 109 ~i~~~~~~sL~~L~~--d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~vr 157 (255)
...+.+.+.+++||+ ++-..+ ........+.+++.+.+|.++|.|-
T Consensus 88 ~~~~~~~~~~~~lgi~~~~~~~~---~T~~~~~~~~v~~~f~~L~~~G~iY 135 (338)
T cd00818 88 RYVDEQEEQFQRLGVWVDWENPY---KTMDPEYMESVWWVFKQLHEKGLLY 135 (338)
T ss_pred HHHHHHHHHHHHhCceecCCCCe---ECCCHHHHHHHHHHHHHHHHCCCEe
Confidence 456777889999997 432222 2222233567899999999999974
No 232
>PRK01492 rnpA ribonuclease P; Reviewed
Probab=22.80 E-value=3.1e+02 Score=19.95 Aligned_cols=61 Identities=10% Similarity=0.079 Sum_probs=41.2
Q ss_pred CCceEEEecccccccCccccccCCCHHHHHHHHHHHHhHcCC----C--cceEEecccCCCC-CCHHHHHHHHHHHH
Q 025312 82 REKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDV----D--YIDLYYQHRVDTS-VPIEETIGEMKKLV 151 (255)
Q Consensus 82 R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~----d--~iDl~~lH~~~~~-~~~~~~~~~l~~l~ 151 (255)
|=-+.|+-|++... ..+..+++.+.++.+.+.. . -.|++++-.+... .++.++.+.|+.|.
T Consensus 47 RlG~sVSKKv~~kA---------V~RNRiKR~lRE~fR~~~~~~~l~~~g~DiVviaR~~~~~~~~~~l~~~l~~l~ 114 (118)
T PRK01492 47 FLGIKVSRKLNKKA---------VVRNKIKRRIRHLIRIIVSDSSFKAIKFAMIIIPRKGFEEINFSHLNYELSKII 114 (118)
T ss_pred eEEEEEecccCCch---------hhHHHHHHHHHHHHHHhCcccccCCCCceEEEEECCCcccCCHHHHHHHHHHHH
Confidence 55678888854221 4567788888888877653 2 5799999888643 45666666666654
No 233
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=22.71 E-value=2.9e+02 Score=23.76 Aligned_cols=133 Identities=16% Similarity=0.124 Sum_probs=74.0
Q ss_pred CHHHHHHHHHHHHHcCCCceecc----------cccCCC--chHHHHHHHHhcC-CCCceEEEecccccccCccccccCC
Q 025312 39 SEEDGISMIKHAFSKGITFFDTA----------DVYGQN--ANEVLLGKALKQL-PREKIQVATKFGIAGIGVAGVIVKG 105 (255)
Q Consensus 39 ~~~~~~~~l~~a~~~Gi~~~DtA----------~~Yg~g--~se~~lg~~l~~~-~R~~~~i~tK~~~~~~~~~~~~~~~ 105 (255)
+++...+....+.+.|+..||-= ..+|.+ .+-+.+.+.++.. ..-++-|+.|+-..+ +.
T Consensus 64 ~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~--------~~ 135 (309)
T PF01207_consen 64 DPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGW--------DD 135 (309)
T ss_dssp -HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESEC--------T-
T ss_pred cHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEeccccc--------cc
Confidence 67778888888888899999931 123321 2345666666551 112255666653222 11
Q ss_pred CHHHHHHHHHHHHhHcCCCcceEEecccCCCCCCH--HHHHHHHHHHHHhCCcceEEcCCC-CHHHHHHHhhcCCceEee
Q 025312 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPI--EETIGEMKKLVEEGKIKYIGLSEA-SPGTIRRAHAVHPITAVQ 182 (255)
Q Consensus 106 ~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~--~~~~~~l~~l~~~G~vr~iGvsn~-~~~~l~~~~~~~~~~~~q 182 (255)
+.+...+ +-+.|+..| +|.+.+|.-...... ..-|+.+.++++.=.|--||=.+. +.+++.+.++....+-++
T Consensus 136 ~~~~~~~-~~~~l~~~G---~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvM 211 (309)
T PF01207_consen 136 SPEETIE-FARILEDAG---VSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVM 211 (309)
T ss_dssp -CHHHHH-HHHHHHHTT-----EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEE
T ss_pred chhHHHH-HHHHhhhcc---cceEEEecCchhhcCCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEE
Confidence 2333333 445677777 788999986444332 346888888888877766665554 677888887765666666
Q ss_pred c
Q 025312 183 M 183 (255)
Q Consensus 183 ~ 183 (255)
+
T Consensus 212 i 212 (309)
T PF01207_consen 212 I 212 (309)
T ss_dssp E
T ss_pred E
Confidence 6
No 234
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=22.26 E-value=1.4e+02 Score=25.81 Aligned_cols=49 Identities=20% Similarity=0.118 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHHhCCc
Q 025312 107 PDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKI 156 (255)
Q Consensus 107 ~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~v 156 (255)
.+...+.+.+.+++||++ +|....-........+-+.+.+.+|.++|.|
T Consensus 68 ~~~~~~~~~~~~~~lgi~-~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~i 116 (314)
T cd00812 68 TEYNIKKMKEQLKRMGFS-YDWRREFTTCDPEYYKFTQWLFLKLYEKGLA 116 (314)
T ss_pred HHHHHHHHHHHHHHhccc-eecccccccCCHHHHHHHHHHHHHHHHCCCE
Confidence 356788889999999985 5731110111111234467788899999987
No 235
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=22.20 E-value=6.5e+02 Score=23.50 Aligned_cols=100 Identities=9% Similarity=0.079 Sum_probs=53.8
Q ss_pred hHHHHHHHHhc----CCCCceEEEecccccccCccccccCCCHHHHHHHHHHHHhHcCCCcceEEecccCCCCCC-H---
Q 025312 69 NEVLLGKALKQ----LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVP-I--- 140 (255)
Q Consensus 69 se~~lg~~l~~----~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~-~--- 140 (255)
+++.+-+.|++ ...+-++|.|-+.+.--+ -+.+.+.+.++ ++++ ++++.+|.|..... +
T Consensus 69 g~~kL~~~I~~~~~~~~P~~I~V~tTC~~eiIG-------DDi~~v~~~~~---~~~~---~pVi~v~t~~f~g~~~~g~ 135 (513)
T CHL00076 69 SQEKVVDNITRKDKEERPDLIVLTPTCTSSILQ-------EDLQNFVDRAS---IESD---SDVILADVNHYRVNELQAA 135 (513)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEECCCCchhhhh-------cCHHHHHHHhh---cccC---CCEEEeCCCCCcccHHHHH
Confidence 45555555654 345556676665433211 23344433332 2233 68999999966532 2
Q ss_pred HHHHHHHHHH---------------HHhCCcceEEcCC------CCHHHHHHHhhcCCceEe
Q 025312 141 EETIGEMKKL---------------VEEGKIKYIGLSE------ASPGTIRRAHAVHPITAV 181 (255)
Q Consensus 141 ~~~~~~l~~l---------------~~~G~vr~iGvsn------~~~~~l~~~~~~~~~~~~ 181 (255)
+.+++++.+. ...++|--||.++ .+...|+++++...+.+|
T Consensus 136 ~~~l~~lv~~~~~~~~~~~~~~~~~~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~vn 197 (513)
T CHL00076 136 DRTLEQIVRFYLEKARKQGTLDQSKTDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEIN 197 (513)
T ss_pred HHHHHHHHHHHhhcccccccccccCCCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeEE
Confidence 2223322221 1235688888774 345678888887776666
No 236
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=22.09 E-value=2.1e+02 Score=26.30 Aligned_cols=46 Identities=17% Similarity=0.234 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHHhCCcc
Q 025312 108 DYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK 157 (255)
Q Consensus 108 ~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~vr 157 (255)
+...+.+.+.+++||+...|.+ |......+++.+..++|+++|.+-
T Consensus 91 ~~~~~~f~~~~~~Lgi~~~d~~----~r~t~~~~~~~~~i~~L~~kG~aY 136 (463)
T PRK00260 91 ERYIAAFHEDMDALNVLPPDIE----PRATEHIPEIIELIERLIDKGHAY 136 (463)
T ss_pred HHHHHHHHHHHHHcCCCCCCcc----ccccccHHHHHHHHHHHHHCCCEE
Confidence 4567778999999999777743 333345678888999999999974
No 237
>PRK11024 colicin uptake protein TolR; Provisional
Probab=22.06 E-value=2.1e+02 Score=21.32 Aligned_cols=54 Identities=20% Similarity=0.211 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHHHhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHHhCCcceEEcCC
Q 025312 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE 163 (255)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn 163 (255)
.+.+.+...++..+..- -|...+=..|...++..+.+.|..+++.|- ..+++.+
T Consensus 85 v~~~~L~~~l~~~~~~~----~~~~V~i~aD~~~~~~~vv~vmd~~k~aG~-~~v~l~t 138 (141)
T PRK11024 85 LPEEQVVAEAKSRFKAN----PKTVFLIGGAKDVPYDEIIKALNLLHSAGV-KSVGLMT 138 (141)
T ss_pred cCHHHHHHHHHHHHhhC----CCceEEEEcCCCCCHHHHHHHHHHHHHcCC-CeEEEEe
Confidence 35566665555544432 233333346777889999999999999984 4577653
No 238
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=21.95 E-value=5.2e+02 Score=24.79 Aligned_cols=61 Identities=11% Similarity=0.159 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHHHHHhHcCCCcce-EEecccCCCCCCHHHHHHHHHHHHHhCCcceEEcCCCCHHHHHHH
Q 025312 104 KGAPDYVRSCCEASLKRLDVDYID-LYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRA 172 (255)
Q Consensus 104 ~~~~~~i~~~~~~sL~~L~~d~iD-l~~lH~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn~~~~~l~~~ 172 (255)
.........++.+.|+-||+++=. .++ ....++...+++++|.++|+. + +|..+.+++++.
T Consensus 97 ~R~~~e~~d~IleDL~WLGl~wDe~~~~-----QSdr~d~y~e~a~~Li~~G~A--Y-~c~cs~eei~~~ 158 (601)
T PTZ00402 97 SKEKEHFEQAILDDLATLGVSWDVGPTY-----SSDYMDLMYEKAEELIKKGLA--Y-CDKTPREEMQKC 158 (601)
T ss_pred cccCHHHHHHHHHHHHHCCCCCCCceee-----ccccHHHHHHHHHHHHHcCCE--E-EecCCHHHHHHH
Confidence 345667888899999999986411 111 123466788999999999995 4 777777776544
No 239
>PRK08508 biotin synthase; Provisional
Probab=21.92 E-value=4.9e+02 Score=21.94 Aligned_cols=53 Identities=13% Similarity=0.037 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHHHhCCcc----eEEcCCCCHHHHHHHhhc-CCceEeeccCCcCCcC
Q 025312 138 VPIEETIGEMKKLVEEGKIK----YIGLSEASPGTIRRAHAV-HPITAVQMEWSLWTRD 191 (255)
Q Consensus 138 ~~~~~~~~~l~~l~~~G~vr----~iGvsn~~~~~l~~~~~~-~~~~~~q~~~n~~~~~ 191 (255)
..+++.++.++.+++.|.-- -+|+ +-+.+++.+.+.. ..+..-.+++|++.+.
T Consensus 134 ~~~~~~l~~i~~a~~~Gi~v~sg~I~Gl-GEt~ed~~~~l~~lr~L~~~svpl~~~~p~ 191 (279)
T PRK08508 134 HTWEERFQTCENAKEAGLGLCSGGIFGL-GESWEDRISFLKSLASLSPHSTPINFFIPN 191 (279)
T ss_pred CCHHHHHHHHHHHHHcCCeecceeEEec-CCCHHHHHHHHHHHHcCCCCEEeeCCcCCC
Confidence 45788999999999998521 2455 4566655543322 1122223566666654
No 240
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=21.85 E-value=5.4e+02 Score=22.49 Aligned_cols=133 Identities=21% Similarity=0.225 Sum_probs=75.3
Q ss_pred CCHHHHHHHHHHHHHcCCCceecccccC---------C-----C----chHHHHHHHHhcCCCCceEEEecccccccCcc
Q 025312 38 VSEEDGISMIKHAFSKGITFFDTADVYG---------Q-----N----ANEVLLGKALKQLPREKIQVATKFGIAGIGVA 99 (255)
Q Consensus 38 ~~~~~~~~~l~~a~~~Gi~~~DtA~~Yg---------~-----g----~se~~lg~~l~~~~R~~~~i~tK~~~~~~~~~ 99 (255)
.+.++...+.+.+-+.|+.++=|...-. . + .+-.++-..-+ ....++++|=.
T Consensus 73 l~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KIaS~~~~n~pLL~~~A~--~gkPvilStGm-------- 142 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEFLSTPFDLESADFLEDLGVPRFKIPSGEITNAPLLKKIAR--FGKPVILSTGM-------- 142 (329)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCEEEECcccccCHHHHHHHHh--cCCcEEEECCC--------
Confidence 4678889999999999999885443211 0 0 12222222211 22335555432
Q ss_pred ccccCCCHHHHHHHHHHHHhHcCCCcceEEecccCCCC-CCHHH-HHHHHHHHHHhCCcceEEcCCCCHHHHHHHhhc-C
Q 025312 100 GVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS-VPIEE-TIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV-H 176 (255)
Q Consensus 100 ~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~-~~~~~-~~~~l~~l~~~G~vr~iGvsn~~~~~l~~~~~~-~ 176 (255)
.+.+.|..+++...+. |.+.-|+.++|+.... .+.++ -+.++..|++.=. .-||+|.|+.......... .
T Consensus 143 -----atl~Ei~~Av~~i~~~-G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f~-~pVG~SdHt~G~~~~~aAval 215 (329)
T TIGR03569 143 -----ATLEEIEAAVGVLRDA-GTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAFD-LPVGYSDHTLGIEAPIAAVAL 215 (329)
T ss_pred -----CCHHHHHHHHHHHHHc-CCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHhC-CCEEECCCCccHHHHHHHHHc
Confidence 4778899998887543 4321258999987532 22222 3566666666443 4699999987543322221 2
Q ss_pred CceEeeccCCc
Q 025312 177 PITAVQMEWSL 187 (255)
Q Consensus 177 ~~~~~q~~~n~ 187 (255)
.-+++.-.|.+
T Consensus 216 GA~iIEkH~tl 226 (329)
T TIGR03569 216 GATVIEKHFTL 226 (329)
T ss_pred CCCEEEeCCCh
Confidence 23455555555
No 241
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=21.81 E-value=91 Score=26.75 Aligned_cols=38 Identities=29% Similarity=0.391 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHcCC---CceecccccCC-CchHHHHHHHHh
Q 025312 41 EDGISMIKHAFSKGI---TFFDTADVYGQ-NANEVLLGKALK 78 (255)
Q Consensus 41 ~~~~~~l~~a~~~Gi---~~~DtA~~Yg~-g~se~~lg~~l~ 78 (255)
..+.++++.|-+.|. +||||+.+|.. +..|+--++++.
T Consensus 137 RKAlRlm~~AekF~lPiitfIDT~GAypG~~AEErGQ~eAIA 178 (317)
T COG0825 137 RKALRLMKLAEKFGLPIITFIDTPGAYPGIGAEERGQSEAIA 178 (317)
T ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCcchhhcccHHHHH
Confidence 357888899989886 69999999976 333444444444
No 242
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=21.70 E-value=3.7e+02 Score=20.44 Aligned_cols=31 Identities=19% Similarity=0.190 Sum_probs=24.3
Q ss_pred ceEEEecccccccCccccccCCCHHHHHHHHHHHHhHcCC
Q 025312 84 KIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDV 123 (255)
Q Consensus 84 ~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~ 123 (255)
+++|..|-+.. ..+.+.+.+++...|+++++
T Consensus 87 DiVviar~~~~---------~~~~~~l~~~l~~LL~k~~~ 117 (145)
T PRK04820 87 DYVVVARSAAA---------KASNPQLRDAFLRLLRRAGA 117 (145)
T ss_pred CEEEEEeCCcc---------cCCHHHHHHHHHHHHHHhCc
Confidence 67777776532 36888999999999999875
No 243
>PF09391 DUF2000: Protein of unknown function (DUF2000); InterPro: IPR018988 This is a family of proteins of unknown function. The structure of one of the proteins in this family has been shown to adopt an alpha beta fold. ; PDB: 2GAX_A.
Probab=21.67 E-value=2.7e+02 Score=20.78 Aligned_cols=47 Identities=19% Similarity=0.202 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHHcCCCceecccccCCCchHHHHHHHHhcCCCCce
Q 025312 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKI 85 (255)
Q Consensus 39 ~~~~~~~~l~~a~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~R~~~ 85 (255)
+.++..++...|++.|+.++|....=-...+..-..+.+++.+.+++
T Consensus 62 ~~~~L~~l~~~a~~~~i~~~~F~~~aq~~~~y~e~~~~~~~~~~~~l 108 (133)
T PF09391_consen 62 NSEQLRELRQKALEREITVVDFTDEAQSTGHYEEYRAAVAATPEEDL 108 (133)
T ss_dssp -HHHHHHHHHHHHHTT---EEEEGGGGG---HHHHHHHHTT--TTT-
T ss_pred CHHHHHHHHHHHHHCCCeEEeChHHHhhCCCHHHHHHHHhcCChhhc
Confidence 67889999999999999888844432222245555555665455554
No 244
>PRK06740 histidinol-phosphatase; Validated
Probab=21.65 E-value=3e+02 Score=23.98 Aligned_cols=24 Identities=21% Similarity=0.090 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHcCCCceecccc
Q 025312 40 EEDGISMIKHAFSKGITFFDTADV 63 (255)
Q Consensus 40 ~~~~~~~l~~a~~~Gi~~~DtA~~ 63 (255)
+....+.+.+|++.|+..|=.+++
T Consensus 60 ~~~~e~yv~~Ai~~G~~~ig~SdH 83 (331)
T PRK06740 60 TKWIDLYLEEALRKGIKEVGIVDH 83 (331)
T ss_pred cchHHHHHHHHHHCCCcEEEECCC
Confidence 455789999999999997755544
No 245
>PF00825 Ribonuclease_P: Ribonuclease P; InterPro: IPR000100 Ribonuclease P (3.1.26.5 from EC) (RNase P) [, , ] is a site specific endonuclease that generates mature tRNAs by catalysing the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. In bacteria RNase P is known to be composed of two components: a large RNA (about 400 base pairs) encoded by rnpB, and a small protein (119 to 133 amino acids) encoded by rnpA. The RNA moiety of RNase P carries the catalytic activity; the protein component plays an auxiliary, but essential, role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. The sequence of rnpA is not highly conserved, however there is, in the central part of the protein, a conserved basic region.; GO: 0000049 tRNA binding, 0004526 ribonuclease P activity, 0008033 tRNA processing; PDB: 1D6T_A 1A6F_A 2LJP_A 1NZ0_C 3Q1Q_A 3Q1R_A.
Probab=21.60 E-value=2.6e+02 Score=19.76 Aligned_cols=48 Identities=17% Similarity=0.218 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHHhHcCCC---cceEEecccCC-CCCCHHHHHHHHHHHHH
Q 025312 105 GAPDYVRSCCEASLKRLDVD---YIDLYYQHRVD-TSVPIEETIGEMKKLVE 152 (255)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d---~iDl~~lH~~~-~~~~~~~~~~~l~~l~~ 152 (255)
..+..+++.+.++.+..... ..|++++-.+. ...+++++.+.|..+.+
T Consensus 57 V~RNriKR~lRe~~R~~~~~l~~~~d~v~~~r~~~~~~~~~~l~~~l~~ll~ 108 (111)
T PF00825_consen 57 VKRNRIKRRLREAFRLNKPELPPGYDIVFIARPGALELSFEELEKELKKLLK 108 (111)
T ss_dssp HHHHHHHHHHHHHHHHCTTTS-SSSEEEEEE-CGGGGS-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhccCCcEEEEEEcCCcCcCCHHHHHHHHHHHHH
Confidence 45667888888887777543 67988887765 34567777777776654
No 246
>PHA02820 phospholipase-D-like protein; Provisional
Probab=21.38 E-value=6.2e+02 Score=22.97 Aligned_cols=45 Identities=11% Similarity=0.141 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHHhC
Q 025312 109 YVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG 154 (255)
Q Consensus 109 ~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G 154 (255)
.|..++.+.-.+=|++ |=+++=+|++........+..|++|.+.|
T Consensus 257 ~i~~AL~~AA~~RGV~-VriLvp~~~d~~~~~~a~~~~l~~L~~~g 301 (424)
T PHA02820 257 YIEDELRRAAIDRKVS-VKLLISCWQRSSFIMRNFLRSIAMLKSKN 301 (424)
T ss_pred HHHHHHHHHHHhCCCE-EEEEEeccCCCCccHHHHHHHHHHHhccC
Confidence 4666655433334542 44555566665444445677788887777
No 247
>PF13467 RHH_4: Ribbon-helix-helix domain; PDB: 3KK4_C.
Probab=21.36 E-value=1.5e+02 Score=19.27 Aligned_cols=28 Identities=7% Similarity=0.040 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhC
Q 025312 212 SIYFRIGNLAKKYNCTSAQLALAWVLGQ 239 (255)
Q Consensus 212 ~~~~~l~~ia~~~~~s~~q~al~~~l~~ 239 (255)
...+.|++||+..|+|..+++-..-...
T Consensus 21 ~FW~~L~eiA~~~g~s~~~li~~id~~r 48 (67)
T PF13467_consen 21 AFWDALEEIAAREGLSLNALIAEIDARR 48 (67)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 3567899999999999998887665443
No 248
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=21.21 E-value=6.4e+02 Score=23.08 Aligned_cols=115 Identities=15% Similarity=0.156 Sum_probs=62.2
Q ss_pred ecccccCCCchHHHHHHHHhc----CC-CCceEEEecccccccCccccccCCCHHHHHHHHHHHHh-HcCCCcceEEecc
Q 025312 59 DTADVYGQNANEVLLGKALKQ----LP-REKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLK-RLDVDYIDLYYQH 132 (255)
Q Consensus 59 DtA~~Yg~g~se~~lg~~l~~----~~-R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~-~L~~d~iDl~~lH 132 (255)
+....|| .|+-+-++|++ .+ .+-++|.|-+.+..-+ -+.+.+.+.+++-++ ...--.+.++.+|
T Consensus 63 E~d~VfG---G~~~L~~~I~~~~~~~~~p~~I~V~tTC~~eiIG-------DDi~~vv~~~~~~~~~e~~~~~~~vi~v~ 132 (454)
T cd01973 63 EDSAVFG---GAKRVEEGVLVLARRYPDLRVIPIITTCSTEIIG-------DDIEGVIRKLNEALKEEFPDREVHLIPVH 132 (454)
T ss_pred CCceEEC---cHHHHHHHHHHHHHhcCCCCEEEEECCchHhhhc-------cCHHHHHHHHHhhhhhccCCCCCeEEEee
Confidence 4455788 57777788876 22 3447787776543322 234444444333221 1110137889999
Q ss_pred cCCCCCCH----HHHHHHHHH-HHH----hCCcceEEcCCC--CHHHHHHHhhcCCceEeec
Q 025312 133 RVDTSVPI----EETIGEMKK-LVE----EGKIKYIGLSEA--SPGTIRRAHAVHPITAVQM 183 (255)
Q Consensus 133 ~~~~~~~~----~~~~~~l~~-l~~----~G~vr~iGvsn~--~~~~l~~~~~~~~~~~~q~ 183 (255)
.|+..-.. +.+++++-+ +.. +++|--||-.+. +.+.++++++...+.++.+
T Consensus 133 tpgF~Gs~~~G~~~a~~ali~~~~~~~~~~~~VNii~~~~~~~D~~ei~~lL~~~Gl~v~~~ 194 (454)
T cd01973 133 TPSFKGSMVTGYDEAVRSVVKTIAKKGAPSGKLNVFTGWVNPGDVVELKHYLSEMDVEANIL 194 (454)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEEEe
Confidence 98876432 233333322 222 356777764332 3467777888777777655
No 249
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.12 E-value=5.8e+02 Score=22.52 Aligned_cols=89 Identities=9% Similarity=0.045 Sum_probs=55.5
Q ss_pred cccCCCHHHHHHHHHHH---HhHcCC--CcceEEecccC-CCCCCHHHHHHHHHHHHHh-CC---cceEEcCCCC-HHHH
Q 025312 101 VIVKGAPDYVRSCCEAS---LKRLDV--DYIDLYYQHRV-DTSVPIEETIGEMKKLVEE-GK---IKYIGLSEAS-PGTI 169 (255)
Q Consensus 101 ~~~~~~~~~i~~~~~~s---L~~L~~--d~iDl~~lH~~-~~~~~~~~~~~~l~~l~~~-G~---vr~iGvsn~~-~~~l 169 (255)
+..+.+.+.|..++... +...|. .-++-+.+... +|....+++.++++.+++. |. -|++-||+.. +..+
T Consensus 126 ~~rnlt~~EI~~qv~~~~~~~~~~g~g~~~i~nIvfmGmGEPLln~~~v~~~l~~l~~~~Gl~~~~r~itvsT~G~~~~i 205 (354)
T PRK14460 126 FERNMTMGEILGQVLVAREHLGDNGPDHPILRNLVFMGMGEPLLNLDEVMRSLRTLNNEKGLNFSPRRITVSTCGIEKGL 205 (354)
T ss_pred CCcCCCHHHHHHHHHHHHHHHhhccCCCcceeEEEEecCCcccCCHHHHHHHHHHHhhhhccCCCCCeEEEECCCChHHH
Confidence 45678999999999544 333332 22666666663 4555678899999999875 54 2678888775 5566
Q ss_pred HHHhhcCCceEeeccCCcCCc
Q 025312 170 RRAHAVHPITAVQMEWSLWTR 190 (255)
Q Consensus 170 ~~~~~~~~~~~~q~~~n~~~~ 190 (255)
+++.+. ....+.+..+-.++
T Consensus 206 ~~L~~~-~l~~L~iSLha~~~ 225 (354)
T PRK14460 206 RELGES-GLAFLAVSLHAPNQ 225 (354)
T ss_pred HHHHhC-CCcEEEEeCCCCCH
Confidence 655543 33334444444433
No 250
>COG3877 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.09 E-value=3.2e+02 Score=19.59 Aligned_cols=44 Identities=16% Similarity=0.191 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHHHhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHHhCCcc
Q 025312 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK 157 (255)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~vr 157 (255)
.++-.++..+++.|+.||. .|+.....+..-+.+-+..++|+|.
T Consensus 69 ~sYptvR~kld~vlramgy---------~p~~e~~~~i~~~~i~~qle~Gei~ 112 (122)
T COG3877 69 ISYPTVRTKLDEVLRAMGY---------NPDSENSVNIGKKKIIDQLEKGEIS 112 (122)
T ss_pred CccHHHHHHHHHHHHHcCC---------CCCCCChhhhhHHHHHHHHHcCCCC
Confidence 4566799999999999995 4555444444444555566678763
No 251
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=20.96 E-value=4.2e+02 Score=25.19 Aligned_cols=57 Identities=25% Similarity=0.262 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHHhCCcceEEcCCCCHHHHHH
Q 025312 107 PDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRR 171 (255)
Q Consensus 107 ~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn~~~~~l~~ 171 (255)
......++.+.|+-||+++ |-. .-....++...+++++|.++|+. + +|..+.+++.+
T Consensus 151 ~~e~~~~I~edL~wLGl~w-D~~----~~qSdr~~~y~~~a~~Li~~G~A-Y--~C~cs~ee~~~ 207 (567)
T PRK04156 151 DPEAYDMILEDLKWLGVKW-DEV----VIQSDRLEIYYEYARKLIEMGGA-Y--VCTCDPEEFKE 207 (567)
T ss_pred hHHHHHHHHHHHHHcCCCC-CCc----cCcccCHHHHHHHHHHHHHcCCC-c--cCCCCHHHHHH
Confidence 3455578889999999865 521 22334567788999999999986 2 44444444433
No 252
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=20.93 E-value=4.4e+02 Score=22.80 Aligned_cols=36 Identities=22% Similarity=0.375 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHHHhCCcceE-EcCCCCHHHHHHHhh
Q 025312 139 PIEETIGEMKKLVEEGKIKYI-GLSEASPGTIRRAHA 174 (255)
Q Consensus 139 ~~~~~~~~l~~l~~~G~vr~i-Gvsn~~~~~l~~~~~ 174 (255)
..++..+.++.+.++|.++-| |+|..+|++|+.+.+
T Consensus 271 ~p~~~a~~~~~f~~~g~vnIvGGCCGTTPeHIraia~ 307 (311)
T COG0646 271 TPEYMAEALAEFAEEGGVNIVGGCCGTTPEHIRAIAE 307 (311)
T ss_pred CHHHHHHHHHHHHHhCCceeeccccCCCHHHHHHHHH
Confidence 356788999999999988877 578889999988754
No 253
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.92 E-value=6.1e+02 Score=22.68 Aligned_cols=121 Identities=13% Similarity=0.139 Sum_probs=75.4
Q ss_pred CCCceEEEeccccccc------CccccccCCCHHHHHHHHHHHHhHcCC-------------Ccce-EEecccCCCCCCH
Q 025312 81 PREKIQVATKFGIAGI------GVAGVIVKGAPDYVRSCCEASLKRLDV-------------DYID-LYYQHRVDTSVPI 140 (255)
Q Consensus 81 ~R~~~~i~tK~~~~~~------~~~~~~~~~~~~~i~~~~~~sL~~L~~-------------d~iD-l~~lH~~~~~~~~ 140 (255)
.|..+.|||-+|=... +..++..+.+...|..|+....+.|+. ..+. ++++---.|..-+
T Consensus 105 ~r~TlCvSSQvGC~mgC~FCaTG~~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~i~NIVfMGMGEPL~Ny 184 (371)
T PRK14461 105 DRATVCVSTQAGCGMGCVFCATGTLGLLRNLSSGEIVAQVIWASRELRAMGAAISKRHAGPVGRVTNLVFMGMGEPFANY 184 (371)
T ss_pred CCceEEEEccCCccCCCCcccCCCCCcccCCCHHHHHHHHHHHHHHhhhcccccccccccccCceeeEEEEccCCchhhH
Confidence 3667788887753221 223567899999999999887666532 1122 2332222344456
Q ss_pred HHHHHHHHHHHHhCC----cceEEcCCCCH-HHHHHHhhcCCceEeeccCCcCCcChhhchhhhcc
Q 025312 141 EETIGEMKKLVEEGK----IKYIGLSEASP-GTIRRAHAVHPITAVQMEWSLWTRDIEEEIIPLCR 201 (255)
Q Consensus 141 ~~~~~~l~~l~~~G~----vr~iGvsn~~~-~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~ 201 (255)
+.++++++-+.+..- -|+|=||+... ..|+++.+.....-..+..|.-+....+.++|..+
T Consensus 185 dnV~~ai~il~d~~g~~is~R~ITVST~Givp~I~~la~~~~~v~LAiSLHA~~~e~R~~lmPin~ 250 (371)
T PRK14461 185 DRWWQAVERLHDPQGFNLGARSMTVSTVGLVKGIRRLANERLPINLAISLHAPDDALRSELMPVNR 250 (371)
T ss_pred HHHHHHHHHhcCccccCcCCCceEEEeecchhHHHHHHhcccCceEEEEeCCCCHHHHHHhcCccc
Confidence 789999999977521 46788888854 46777776544444566666666554455666554
No 254
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=20.89 E-value=76 Score=22.12 Aligned_cols=50 Identities=22% Similarity=0.250 Sum_probs=34.3
Q ss_pred HHHHHHHhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHHhCCcceEEcCCC
Q 025312 112 SCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA 164 (255)
Q Consensus 112 ~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn~ 164 (255)
-.|=.-|.+.|.||.=.+.-.. ..+++++-+.+++|.+.|.|..+.=+.-
T Consensus 10 ~~IL~hl~~~~~Dy~k~ia~~l---~~~~~~v~~~l~~Le~~GLler~~g~~i 59 (92)
T PF10007_consen 10 LKILQHLKKAGPDYAKSIARRL---KIPLEEVREALEKLEEMGLLERVEGKTI 59 (92)
T ss_pred HHHHHHHHHHCCCcHHHHHHHH---CCCHHHHHHHHHHHHHCCCeEEecCccc
Confidence 3444556666777654433332 3568899999999999999998875433
No 255
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=20.86 E-value=4.7e+02 Score=21.34 Aligned_cols=70 Identities=20% Similarity=0.322 Sum_probs=43.5
Q ss_pred CCHHHHHHHHHHHHHcCCCcee-cccccCCCchHHHHHHHHhcCCCCceEEEecccccccCccccccCCCHHHHHHHHHH
Q 025312 38 VSEEDGISMIKHAFSKGITFFD-TADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEA 116 (255)
Q Consensus 38 ~~~~~~~~~l~~a~~~Gi~~~D-tA~~Yg~g~se~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (255)
.+++++..+-..|-+.|+.++= +|+.-. .|+. ++|.+....=+|+.+.+|.. -+++.+...+.+
T Consensus 132 lPpEEa~~~Rne~~k~gislvpLvaPsTt---deRm--ell~~~adsFiYvVSrmG~T----------G~~~svn~~l~~ 196 (268)
T KOG4175|consen 132 LPPEEAETLRNEARKHGISLVPLVAPSTT---DERM--ELLVEAADSFIYVVSRMGVT----------GTRESVNEKLQS 196 (268)
T ss_pred CChHHHHHHHHHHHhcCceEEEeeCCCCh---HHHH--HHHHHhhcceEEEEEecccc----------ccHHHHHHHHHH
Confidence 5678888888888888888775 444443 2332 22332223346788887654 355667777777
Q ss_pred HHhHcC
Q 025312 117 SLKRLD 122 (255)
Q Consensus 117 sL~~L~ 122 (255)
.|+|..
T Consensus 197 L~qrvr 202 (268)
T KOG4175|consen 197 LLQRVR 202 (268)
T ss_pred HHHHHH
Confidence 776664
No 256
>COG4381 Mu-like prophage protein gp46 [Function unknown]
Probab=20.77 E-value=2.6e+02 Score=20.63 Aligned_cols=27 Identities=19% Similarity=0.107 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhCCCCeEEecCCCCCCC
Q 025312 228 SAQLALAWVLGQGDDVVPIPGNFFLSS 254 (255)
Q Consensus 228 ~~q~al~~~l~~~~v~~vi~g~~~~~~ 254 (255)
-+.-||+|+.+.+.+.++.+-++.|.|
T Consensus 81 YA~eALqwlv~sg~a~si~v~A~~p~~ 107 (135)
T COG4381 81 YADEALQWLVKSGRADSIQVRASQPQH 107 (135)
T ss_pred HHHHHHHHHHhcCccceEEEEeecCCC
Confidence 456699999999999999888888765
No 257
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=20.73 E-value=1.7e+02 Score=16.10 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHH
Q 025312 212 SIYFRIGNLAKKYNCTSAQLA 232 (255)
Q Consensus 212 ~~~~~l~~ia~~~~~s~~q~a 232 (255)
...+.|.++|++.|.|.+++.
T Consensus 9 ~~~~~l~~~a~~~g~s~s~~i 29 (39)
T PF01402_consen 9 ELYERLDELAKELGRSRSELI 29 (39)
T ss_dssp HHHHHHHHHHHHHTSSHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHH
Confidence 345789999999999987754
No 258
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=20.34 E-value=2.2e+02 Score=23.77 Aligned_cols=84 Identities=11% Similarity=0.020 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHcCCCceecccccCCCchHHHHHHHHhcCCCCceEEEecccccccCccccccCCCHHHHHHHHHHHHhHc
Q 025312 42 DGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRL 121 (255)
Q Consensus 42 ~~~~~l~~a~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L 121 (255)
...+.++.+-+.|++.++.++.+-. -+++..-++++......+.+.+-+|..... .....+++.+.+.+++-|+.
T Consensus 85 ~~~~yl~~~k~lGf~~IEiSdGti~-l~~~~r~~~I~~~~~~Gf~v~~EvG~K~~~---~~~~~~~~~~i~~~~~dLeA- 159 (244)
T PF02679_consen 85 KFDEYLEECKELGFDAIEISDGTID-LPEEERLRLIRKAKEEGFKVLSEVGKKDPE---SDFSLDPEELIEQAKRDLEA- 159 (244)
T ss_dssp -HHHHHHHHHHCT-SEEEE--SSS----HHHHHHHHHHHCCTTSEEEEEES-SSHH---HHTT--CCHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHcCCCEEEecCCcee-CCHHHHHHHHHHHHHCCCEEeecccCCCch---hcccCCHHHHHHHHHHHHHC-
Confidence 4577888888899999988876542 244555566665455668899988753311 12234467777888877776
Q ss_pred CCCcceEEeccc
Q 025312 122 DVDYIDLYYQHR 133 (255)
Q Consensus 122 ~~d~iDl~~lH~ 133 (255)
| .|.+++-.
T Consensus 160 G---A~~ViiEa 168 (244)
T PF02679_consen 160 G---ADKVIIEA 168 (244)
T ss_dssp T---ECEEEE--
T ss_pred C---CCEEEEee
Confidence 5 45566654
No 259
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=20.25 E-value=2.7e+02 Score=25.92 Aligned_cols=46 Identities=15% Similarity=0.234 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHHhCCcc
Q 025312 108 DYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK 157 (255)
Q Consensus 108 ~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~vr 157 (255)
+...+.+.+.+++|++.+.|.+ |......+++.+..+.|+++|.+-
T Consensus 101 ~~~~~~f~~d~~~Lni~~~~~~----~rat~hi~~ii~~i~~L~~kG~aY 146 (490)
T PRK14536 101 AHYTAAFFRDTARLNIERPSIV----CNATEHIQDMIALIKRLEARGHTY 146 (490)
T ss_pred HHHHHHHHHHHHHcCCCCCcee----cCcccHHHHHHHHHHHHHHCCCEE
Confidence 4567788889999999988765 333456788999999999999864
No 260
>PLN02923 xylose isomerase
Probab=20.22 E-value=4.2e+02 Score=24.24 Aligned_cols=92 Identities=21% Similarity=0.191 Sum_probs=46.7
Q ss_pred hHHHHHHHHhcCCCCceEEE-ecccccccC---cc--ccccCCCHHHHHHHHH------HHHhHcCCCcceEEecccCCC
Q 025312 69 NEVLLGKALKQLPREKIQVA-TKFGIAGIG---VA--GVIVKGAPDYVRSCCE------ASLKRLDVDYIDLYYQHRVDT 136 (255)
Q Consensus 69 se~~lg~~l~~~~R~~~~i~-tK~~~~~~~---~~--~~~~~~~~~~i~~~~~------~sL~~L~~d~iDl~~lH~~~~ 136 (255)
.|.++|+-+++..|-.+-.- | ++....+ ++ ...++...+.+..+.. +-+++||+.| +.+|..|-
T Consensus 72 ~evv~GK~M~ehlRFav~yWHT-f~~~G~DpFG~~T~~rpw~~~~d~m~~A~~k~daaFEf~~kLG~~y---~cFHD~Dl 147 (478)
T PLN02923 72 EEEILGKKMKDWMRFSVAFWHT-FRGTGGDPFGAPTKYWPWEDGTNSLAMAKRRMRANFEFLKKLGVDR---WCFHDRDI 147 (478)
T ss_pred hhhcCCccHHHhhhhhheeeee-cCCCCCCCCCCCcCCCCcccCCCHHHHHHHHHHHHHHHHHHhCCCe---EccCcccc
Confidence 78888888887555544332 3 2221111 10 1122222223333333 3678889655 78897653
Q ss_pred C---CC-------HHHHHHHHHH-HHHhCCcceEEcCCC
Q 025312 137 S---VP-------IEETIGEMKK-LVEEGKIKYIGLSEA 164 (255)
Q Consensus 137 ~---~~-------~~~~~~~l~~-l~~~G~vr~iGvsn~ 164 (255)
- .. ++++.+.+++ +.+.|..--+|.+|.
T Consensus 148 ~Peg~sl~E~~~nld~ivd~~ke~~~~TGikllwgTaNl 186 (478)
T PLN02923 148 APDGKTLEESNANLDEVVALAKELQEGTKIRPLWGTAQL 186 (478)
T ss_pred CCCCCCHHHHHhhHHHHHHHHHHHhHhhCceeeeecccc
Confidence 2 11 2455555555 445566666666654
No 261
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=20.14 E-value=6.5e+02 Score=22.73 Aligned_cols=84 Identities=13% Similarity=-0.090 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHHHhHcCCCcceEEecccCCCCCCHHHHHHHHHHHHHhCCcceEEcCC---C-CHHHHHHHhhcCCceE
Q 025312 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE---A-SPGTIRRAHAVHPITA 180 (255)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn---~-~~~~l~~~~~~~~~~~ 180 (255)
.+.+.+.+.+++.+.-... ..+-+.+-...+......+.+.++.+++.|.--+++.+| + +.+.++++.+. .++.
T Consensus 54 ~t~~evl~ev~~d~~~~~~-~~ggVtisGGGepl~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~~-gld~ 131 (404)
T TIGR03278 54 IPPQVVLGEVQTSLGFRTG-RDTKVTISGGGDVSCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDN-GVRE 131 (404)
T ss_pred CCHHHHHHHHHHHHHHhcC-CCCEEEEECCcccccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHHc-CCCE
Confidence 5778888888888876532 256666666655555678889999999989877777455 3 55667776653 3456
Q ss_pred eeccCCcCCc
Q 025312 181 VQMEWSLWTR 190 (255)
Q Consensus 181 ~q~~~n~~~~ 190 (255)
+++..+-.++
T Consensus 132 v~iSvka~dp 141 (404)
T TIGR03278 132 VSFTVFATDP 141 (404)
T ss_pred EEEecccCCH
Confidence 6666666554
No 262
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=20.10 E-value=5.2e+02 Score=21.62 Aligned_cols=120 Identities=11% Similarity=0.117 Sum_probs=61.4
Q ss_pred CCHHHHHHHHHHHHHcCCCce-e-cccccCCCc-hHHHHHHHHhcCCCCceEEEecccccccCccccccCCCHHHHHHHH
Q 025312 38 VSEEDGISMIKHAFSKGITFF-D-TADVYGQNA-NEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCC 114 (255)
Q Consensus 38 ~~~~~~~~~l~~a~~~Gi~~~-D-tA~~Yg~g~-se~~lg~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~ 114 (255)
.+.++..+.++.+.+.|++.| - ++..+.... .++.+....+...+-.+.+....+ ..+++.
T Consensus 62 ~~~eei~~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~~i~~~~~~g-----------~~~~e~----- 125 (296)
T TIGR00433 62 KKVDEVLEEARKAKAAGATRFCLVASGRGPKDREFMEYVEAMVQIVEEMGLKTCATLG-----------LLDPEQ----- 125 (296)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEecCCCChHHHHHHHHHHHHHHHhCCCeEEecCC-----------CCCHHH-----
Confidence 356667777777788898653 2 222222111 133444433321112333322111 123333
Q ss_pred HHHHhHcCCCcceEEecccC------CCCCCHHHHHHHHHHHHHhCCcc----eEEcCCCCHHHHHHHhh
Q 025312 115 EASLKRLDVDYIDLYYQHRV------DTSVPIEETIGEMKKLVEEGKIK----YIGLSEASPGTIRRAHA 174 (255)
Q Consensus 115 ~~sL~~L~~d~iDl~~lH~~------~~~~~~~~~~~~l~~l~~~G~vr----~iGvsn~~~~~l~~~~~ 174 (255)
-+.|++.|++.+-+-+=..+ .....+++.+++++.+++.|.-- -+|+ +.+.+++.+.+.
T Consensus 126 l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl-~et~~d~~~~~~ 194 (296)
T TIGR00433 126 AKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGGIFGL-GETVEDRIGLAL 194 (296)
T ss_pred HHHHHHcCCCEEEEcccCCHHHHhhccCCCCHHHHHHHHHHHHHcCCEEEEeEEEeC-CCCHHHHHHHHH
Confidence 34567778776443221111 11235788899999999998632 2677 667776665543
No 263
>PRK05473 hypothetical protein; Provisional
Probab=20.10 E-value=2.6e+02 Score=19.21 Aligned_cols=36 Identities=14% Similarity=0.269 Sum_probs=22.0
Q ss_pred HHHHHHHHHHH-HcCCCceecccccCCCchHHHHHHHHhcCCCCceEEEec
Q 025312 41 EDGISMIKHAF-SKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATK 90 (255)
Q Consensus 41 ~~~~~~l~~a~-~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~R~~~~i~tK 90 (255)
.++...|..|+ |.|+|=+ -+++|-.|.. |..+|++.
T Consensus 21 ~eiL~~Vy~AL~EKGYNPi-----------nQiVGYllSG---DPaYItsh 57 (86)
T PRK05473 21 REILTTVYDALEEKGYNPI-----------NQIVGYLLSG---DPAYIPRH 57 (86)
T ss_pred HHHHHHHHHHHHHcCCChH-----------HHHHhhhccC---CCCccCCc
Confidence 34445555566 7798755 4788888763 34555554
No 264
>KOG3157 consensus Proline synthetase co-transcribed protein [General function prediction only]
Probab=20.07 E-value=4.9e+02 Score=21.31 Aligned_cols=73 Identities=15% Similarity=0.154 Sum_probs=43.6
Q ss_pred HHHHHHHHHHcCCCceecccccCCCchHHHHHHHHhc--CCCCce---EE----Eecccccc-cCccccccCCCHHHHHH
Q 025312 43 GISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ--LPREKI---QV----ATKFGIAG-IGVAGVIVKGAPDYVRS 112 (255)
Q Consensus 43 ~~~~l~~a~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~--~~R~~~---~i----~tK~~~~~-~~~~~~~~~~~~~~i~~ 112 (255)
-.+++..|++.|-|+| .|..+-+.+.. ...+++ || +.|+.... .++.-.....+.+...+
T Consensus 42 Pa~~i~~~Y~~GqR~F----------GENYVQEl~eKap~lp~DI~WHFIG~lQsnK~kkl~svpnL~~vetVDseK~A~ 111 (244)
T KOG3157|consen 42 PASLIIEAYDAGQRHF----------GENYVQELIEKAPLLPDDIKWHFIGHLQSNKCKKLLSVPNLYSVETVDSEKKAR 111 (244)
T ss_pred cHHHHHHHHHcCcChh----------hHHHHHHHHHhcccCcccceeeeechhhhcccchhccCCceEEEEecchHHHHH
Confidence 3578899999999987 35556555544 122333 33 22332111 11111234467778888
Q ss_pred HHHHHHhHcCCCc
Q 025312 113 CCEASLKRLDVDY 125 (255)
Q Consensus 113 ~~~~sL~~L~~d~ 125 (255)
-++++..++|.+.
T Consensus 112 ~ld~a~~k~g~~~ 124 (244)
T KOG3157|consen 112 KLDSAWSKLGPDN 124 (244)
T ss_pred HHHHHHHhcCCCC
Confidence 8999999999853
No 265
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=20.03 E-value=5.4e+02 Score=21.70 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHHHHcCCCceeccc
Q 025312 38 VSEEDGISMIKHAFSKGITFFDTAD 62 (255)
Q Consensus 38 ~~~~~~~~~l~~a~~~Gi~~~DtA~ 62 (255)
.+.++..++++...+.|++.|+...
T Consensus 17 ~s~e~K~~i~~~L~~~Gv~~IEvGs 41 (274)
T cd07938 17 IPTEDKIELIDALSAAGLRRIEVTS 41 (274)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 4778889999999999999999873
Done!