Query 025313
Match_columns 255
No_of_seqs 211 out of 2398
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 04:35:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025313.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025313hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 7.1E-32 1.5E-36 231.8 19.4 168 44-247 105-276 (346)
2 TIGR01645 half-pint poly-U bin 100.0 1.9E-30 4.1E-35 234.2 18.5 177 45-247 106-285 (612)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 4.3E-29 9.3E-34 217.5 20.2 187 45-248 88-351 (352)
4 KOG0117 Heterogeneous nuclear 100.0 1.2E-29 2.5E-34 214.2 14.6 196 31-251 67-336 (506)
5 TIGR01622 SF-CC1 splicing fact 100.0 8.4E-29 1.8E-33 222.8 19.1 177 44-245 87-265 (457)
6 KOG0148 Apoptosis-promoting RN 100.0 6.7E-29 1.5E-33 197.6 15.0 180 42-247 57-239 (321)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.8E-28 3.9E-33 213.7 15.8 165 46-246 3-171 (352)
8 KOG0144 RNA-binding protein CU 100.0 4.4E-29 9.6E-34 209.9 11.4 182 37-251 25-211 (510)
9 TIGR01642 U2AF_lg U2 snRNP aux 100.0 3.6E-27 7.9E-32 214.9 23.8 189 44-246 173-375 (509)
10 TIGR01648 hnRNP-R-Q heterogene 100.0 4.1E-27 8.8E-32 212.3 19.5 178 46-248 58-309 (578)
11 TIGR01628 PABP-1234 polyadenyl 99.9 6.6E-27 1.4E-31 215.4 14.9 184 45-246 177-364 (562)
12 KOG0145 RNA-binding protein EL 99.9 1.5E-26 3.3E-31 183.3 10.7 162 49-246 44-209 (360)
13 KOG0131 Splicing factor 3b, su 99.9 2.2E-26 4.8E-31 173.4 7.4 169 47-249 10-180 (203)
14 TIGR01628 PABP-1234 polyadenyl 99.9 3.2E-25 7E-30 204.2 16.7 171 45-247 87-262 (562)
15 KOG0127 Nucleolar protein fibr 99.9 2.2E-24 4.9E-29 186.3 13.9 185 47-249 6-199 (678)
16 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 4.2E-24 9.2E-29 192.8 16.2 167 46-246 2-174 (481)
17 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 2.5E-23 5.4E-28 187.8 16.5 178 46-246 275-480 (481)
18 TIGR01642 U2AF_lg U2 snRNP aux 99.9 2.3E-22 5E-27 183.4 19.3 182 46-245 295-501 (509)
19 KOG0124 Polypyrimidine tract-b 99.9 3.2E-23 7E-28 171.6 7.7 174 49-247 116-291 (544)
20 KOG0145 RNA-binding protein EL 99.9 1.5E-21 3.3E-26 155.0 16.2 220 9-246 82-358 (360)
21 KOG0109 RNA-binding protein LA 99.9 9.2E-23 2E-27 164.2 8.7 146 48-246 4-150 (346)
22 KOG0123 Polyadenylate-binding 99.9 6.2E-22 1.3E-26 171.3 13.5 145 69-247 9-154 (369)
23 KOG0127 Nucleolar protein fibr 99.9 1.1E-21 2.3E-26 169.9 14.5 181 59-246 120-378 (678)
24 KOG0147 Transcriptional coacti 99.9 1.3E-22 2.9E-27 175.9 7.3 166 69-244 190-356 (549)
25 KOG0148 Apoptosis-promoting RN 99.9 1.5E-21 3.2E-26 155.9 11.6 143 45-251 5-147 (321)
26 KOG0110 RNA-binding protein (R 99.9 5.7E-22 1.2E-26 176.4 9.7 176 44-247 513-694 (725)
27 KOG4205 RNA-binding protein mu 99.9 1.4E-21 3E-26 163.8 10.1 170 45-247 5-177 (311)
28 PLN03134 glycine-rich RNA-bind 99.9 1.7E-20 3.6E-25 142.3 14.7 85 163-247 31-115 (144)
29 TIGR01622 SF-CC1 splicing fact 99.9 6.4E-20 1.4E-24 165.3 19.2 181 45-246 185-448 (457)
30 KOG0123 Polyadenylate-binding 99.8 7.3E-20 1.6E-24 158.4 11.3 166 49-245 79-245 (369)
31 KOG0144 RNA-binding protein CU 99.8 1.5E-19 3.2E-24 152.7 11.6 83 165-247 423-505 (510)
32 KOG0146 RNA-binding protein ET 99.8 5.8E-19 1.3E-23 140.9 11.2 84 164-247 283-366 (371)
33 PF00076 RRM_1: RNA recognitio 99.8 5.9E-18 1.3E-22 112.6 10.3 70 169-239 1-70 (70)
34 TIGR01659 sex-lethal sex-letha 99.7 1.2E-17 2.7E-22 143.8 11.8 85 162-246 103-187 (346)
35 KOG0122 Translation initiation 99.7 9.4E-18 2E-22 132.4 9.8 83 164-246 187-269 (270)
36 PF14259 RRM_6: RNA recognitio 99.7 1.5E-16 3.3E-21 105.9 10.1 70 169-239 1-70 (70)
37 KOG0125 Ataxin 2-binding prote 99.7 1.2E-16 2.7E-21 131.0 10.5 88 157-246 87-174 (376)
38 KOG0105 Alternative splicing f 99.7 4.4E-15 9.5E-20 112.8 16.2 162 45-234 5-176 (241)
39 KOG0149 Predicted RNA-binding 99.7 1E-16 2.2E-21 126.1 7.6 81 164-245 10-90 (247)
40 KOG0121 Nuclear cap-binding pr 99.7 2.5E-16 5.3E-21 112.6 7.1 81 164-244 34-114 (153)
41 PLN03120 nucleic acid binding 99.7 8.4E-16 1.8E-20 124.8 11.0 76 166-245 4-79 (260)
42 KOG4211 Splicing factor hnRNP- 99.7 1.3E-15 2.8E-20 131.2 12.1 173 43-244 6-180 (510)
43 TIGR01645 half-pint poly-U bin 99.6 7E-16 1.5E-20 140.1 10.6 80 165-244 106-185 (612)
44 KOG4206 Spliceosomal protein s 99.6 7E-15 1.5E-19 115.5 14.2 171 48-244 11-220 (221)
45 TIGR01648 hnRNP-R-Q heterogene 99.6 2.9E-15 6.4E-20 135.8 13.3 80 164-244 56-136 (578)
46 KOG0130 RNA-binding protein RB 99.6 1.1E-15 2.3E-20 110.3 7.7 84 163-246 69-152 (170)
47 KOG0113 U1 small nuclear ribon 99.6 5.5E-15 1.2E-19 120.0 11.7 83 164-246 99-181 (335)
48 KOG0126 Predicted RNA-binding 99.6 5.8E-17 1.3E-21 122.6 0.2 80 165-244 34-113 (219)
49 KOG0107 Alternative splicing f 99.6 2.7E-15 5.8E-20 113.0 8.9 81 166-251 10-90 (195)
50 smart00362 RRM_2 RNA recogniti 99.6 6.4E-15 1.4E-19 97.6 9.9 72 168-241 1-72 (72)
51 KOG4207 Predicted splicing fac 99.6 1.4E-15 3E-20 117.4 6.8 80 165-244 12-91 (256)
52 PLN03213 repressor of silencin 99.6 4.9E-15 1.1E-19 127.6 10.1 78 165-246 9-88 (759)
53 KOG0111 Cyclophilin-type pepti 99.6 8.8E-16 1.9E-20 119.6 4.9 86 164-249 8-93 (298)
54 PLN03121 nucleic acid binding 99.6 9.9E-15 2.2E-19 116.8 10.7 76 165-244 4-79 (243)
55 KOG0117 Heterogeneous nuclear 99.6 9.3E-15 2E-19 124.5 11.2 84 163-246 80-164 (506)
56 smart00360 RRM RNA recognition 99.6 1.1E-14 2.4E-19 96.1 9.0 71 171-241 1-71 (71)
57 KOG0106 Alternative splicing f 99.6 5E-15 1.1E-19 117.3 8.2 163 49-245 4-170 (216)
58 KOG0108 mRNA cleavage and poly 99.6 6.1E-15 1.3E-19 129.1 8.0 82 167-248 19-100 (435)
59 KOG0110 RNA-binding protein (R 99.6 5.2E-14 1.1E-18 126.1 13.8 182 42-245 381-597 (725)
60 KOG0114 Predicted RNA-binding 99.6 4.9E-14 1.1E-18 97.2 10.0 82 162-246 14-95 (124)
61 KOG0131 Splicing factor 3b, su 99.5 1E-14 2.3E-19 110.5 6.5 81 165-245 8-88 (203)
62 cd00590 RRM RRM (RNA recogniti 99.5 1.1E-13 2.3E-18 92.1 10.6 74 168-242 1-74 (74)
63 COG0724 RNA-binding proteins ( 99.5 8.3E-14 1.8E-18 116.3 10.5 79 166-244 115-193 (306)
64 smart00361 RRM_1 RNA recogniti 99.5 1.6E-13 3.4E-18 91.3 8.7 62 180-241 2-70 (70)
65 KOG4212 RNA-binding protein hn 99.5 5E-13 1.1E-17 113.8 13.3 192 38-246 36-294 (608)
66 PF13893 RRM_5: RNA recognitio 99.5 3.8E-13 8.2E-18 85.4 8.6 56 183-243 1-56 (56)
67 KOG0147 Transcriptional coacti 99.4 4.3E-13 9.3E-18 117.2 9.9 173 49-244 281-526 (549)
68 KOG4212 RNA-binding protein hn 99.4 7.9E-13 1.7E-17 112.6 9.1 82 165-247 43-125 (608)
69 KOG0105 Alternative splicing f 99.4 6.8E-13 1.5E-17 101.0 7.5 79 165-246 5-83 (241)
70 KOG0415 Predicted peptidyl pro 99.4 5E-13 1.1E-17 111.0 7.0 88 160-247 233-320 (479)
71 KOG4208 Nucleolar RNA-binding 99.4 2.7E-12 5.9E-17 99.5 8.6 84 163-246 46-130 (214)
72 KOG0109 RNA-binding protein LA 99.4 1.2E-12 2.7E-17 106.1 6.9 73 167-247 3-75 (346)
73 KOG0120 Splicing factor U2AF, 99.4 1.1E-11 2.4E-16 109.5 13.4 183 46-245 289-491 (500)
74 KOG0120 Splicing factor U2AF, 99.4 4.4E-12 9.6E-17 112.0 10.6 185 52-247 180-370 (500)
75 KOG1365 RNA-binding protein Fu 99.4 3.8E-12 8.2E-17 106.8 9.0 187 46-245 160-361 (508)
76 KOG0124 Polypyrimidine tract-b 99.3 9.8E-13 2.1E-17 109.7 4.6 77 166-242 113-189 (544)
77 KOG4206 Spliceosomal protein s 99.3 6.9E-12 1.5E-16 98.7 8.5 79 166-247 9-91 (221)
78 KOG1457 RNA binding protein (c 99.3 5.6E-11 1.2E-15 93.2 13.0 65 166-234 210-274 (284)
79 KOG4210 Nuclear localization s 99.3 5.3E-12 1.2E-16 105.8 6.7 179 46-250 88-268 (285)
80 PLN03134 glycine-rich RNA-bind 99.3 6.7E-12 1.5E-16 95.2 6.1 65 45-126 33-99 (144)
81 KOG1548 Transcription elongati 99.3 2.7E-10 5.8E-15 94.7 14.9 186 39-246 126-352 (382)
82 KOG0146 RNA-binding protein ET 99.3 6.6E-12 1.4E-16 100.8 5.3 82 165-247 18-102 (371)
83 COG0724 RNA-binding proteins ( 99.3 3.2E-11 6.9E-16 100.6 9.8 165 46-227 115-286 (306)
84 KOG0153 Predicted RNA-binding 99.2 8.4E-11 1.8E-15 97.7 9.4 80 160-245 222-302 (377)
85 KOG0149 Predicted RNA-binding 99.2 2.6E-11 5.5E-16 95.9 5.7 70 43-129 9-80 (247)
86 KOG4205 RNA-binding protein mu 99.2 2E-11 4.4E-16 102.8 5.5 85 165-250 5-89 (311)
87 KOG0128 RNA-binding protein SA 99.2 1.9E-12 4E-17 118.3 -1.8 150 44-246 665-815 (881)
88 KOG1190 Polypyrimidine tract-b 99.2 1.9E-09 4.2E-14 91.5 16.2 164 69-246 309-491 (492)
89 PF00076 RRM_1: RNA recognitio 99.2 1.6E-11 3.5E-16 81.2 3.0 59 52-126 3-62 (70)
90 KOG0132 RNA polymerase II C-te 99.2 8.7E-11 1.9E-15 106.5 8.0 77 165-247 420-496 (894)
91 KOG4454 RNA binding protein (R 99.1 1.9E-11 4E-16 95.6 0.0 140 44-234 7-151 (267)
92 KOG0226 RNA-binding proteins [ 99.1 2.3E-10 5E-15 91.4 6.2 141 92-246 128-270 (290)
93 KOG1457 RNA binding protein (c 99.1 3.7E-09 8E-14 83.1 12.4 92 162-253 30-125 (284)
94 KOG0129 Predicted RNA-binding 99.1 2.2E-09 4.7E-14 93.8 12.3 162 41-227 254-432 (520)
95 KOG1190 Polypyrimidine tract-b 99.1 4.7E-09 1E-13 89.2 13.7 171 52-246 155-373 (492)
96 PLN03121 nucleic acid binding 99.1 2.7E-10 5.9E-15 91.5 6.0 64 45-127 4-67 (243)
97 KOG4661 Hsp27-ERE-TATA-binding 99.1 7.5E-10 1.6E-14 97.5 9.1 84 164-247 403-486 (940)
98 KOG0112 Large RNA-binding prot 99.1 2.1E-10 4.5E-15 105.7 5.9 161 42-246 368-531 (975)
99 PLN03120 nucleic acid binding 99.0 2.6E-10 5.6E-15 93.0 5.5 62 46-126 4-65 (260)
100 KOG0533 RRM motif-containing p 99.0 1.7E-09 3.6E-14 87.9 9.0 81 165-246 82-162 (243)
101 KOG1548 Transcription elongati 99.0 4.7E-09 1E-13 87.4 10.4 85 162-247 130-222 (382)
102 KOG4209 Splicing factor RNPS1, 99.0 1.3E-09 2.7E-14 88.7 6.9 83 163-246 98-180 (231)
103 KOG0116 RasGAP SH3 binding pro 98.9 3.9E-09 8.5E-14 92.4 9.2 81 166-247 288-368 (419)
104 PF14259 RRM_6: RNA recognitio 98.9 2.3E-10 5E-15 75.9 0.6 58 52-125 3-60 (70)
105 KOG0121 Nuclear cap-binding pr 98.9 1E-09 2.2E-14 78.9 3.1 68 42-126 32-101 (153)
106 PF04059 RRM_2: RNA recognitio 98.9 2.1E-08 4.5E-13 70.1 9.4 80 167-246 2-87 (97)
107 KOG0122 Translation initiation 98.9 4.4E-09 9.4E-14 83.8 5.9 65 45-126 188-254 (270)
108 KOG0126 Predicted RNA-binding 98.9 1.2E-10 2.5E-15 88.7 -3.1 74 37-127 26-101 (219)
109 KOG4211 Splicing factor hnRNP- 98.8 2.3E-08 5E-13 87.0 9.0 79 164-246 8-86 (510)
110 KOG4660 Protein Mei2, essentia 98.8 4.8E-09 1.1E-13 92.4 4.5 74 161-239 70-143 (549)
111 KOG0151 Predicted splicing reg 98.8 1.6E-08 3.4E-13 91.4 7.5 84 163-246 171-257 (877)
112 KOG0113 U1 small nuclear ribon 98.8 8E-09 1.7E-13 84.5 5.1 60 47-123 102-162 (335)
113 KOG0106 Alternative splicing f 98.8 1.2E-08 2.6E-13 81.2 5.1 72 167-246 2-73 (216)
114 KOG1456 Heterogeneous nuclear 98.7 2.2E-07 4.7E-12 78.4 12.6 168 44-247 29-200 (494)
115 KOG1365 RNA-binding protein Fu 98.7 3E-08 6.5E-13 83.7 7.5 176 40-240 53-237 (508)
116 KOG4454 RNA binding protein (R 98.7 4.5E-09 9.8E-14 82.4 2.3 80 163-244 6-85 (267)
117 KOG4207 Predicted splicing fac 98.7 1.1E-08 2.3E-13 79.6 4.3 66 45-127 12-79 (256)
118 KOG0114 Predicted RNA-binding 98.7 1.7E-08 3.6E-13 70.0 4.7 65 42-125 14-79 (124)
119 KOG0107 Alternative splicing f 98.7 2.6E-08 5.6E-13 75.6 4.4 61 45-126 9-70 (195)
120 smart00360 RRM RNA recognition 98.7 7.4E-08 1.6E-12 62.8 6.0 55 52-122 1-56 (71)
121 smart00362 RRM_2 RNA recogniti 98.6 5.6E-08 1.2E-12 63.7 5.2 56 49-122 2-57 (72)
122 PLN03213 repressor of silencin 98.6 4.4E-08 9.5E-13 85.3 5.0 62 45-126 9-73 (759)
123 KOG0111 Cyclophilin-type pepti 98.6 3.3E-08 7.2E-13 77.6 2.9 65 44-125 8-74 (298)
124 KOG1456 Heterogeneous nuclear 98.6 5.9E-06 1.3E-10 69.9 15.8 78 164-246 285-363 (494)
125 KOG4208 Nucleolar RNA-binding 98.5 7.5E-08 1.6E-12 75.0 4.1 65 49-128 51-117 (214)
126 KOG0108 mRNA cleavage and poly 98.5 1.5E-07 3.3E-12 83.0 5.4 63 47-126 19-83 (435)
127 KOG0125 Ataxin 2-binding prote 98.5 2.5E-07 5.4E-12 76.8 5.6 64 45-126 95-159 (376)
128 smart00361 RRM_1 RNA recogniti 98.4 3E-07 6.4E-12 60.9 4.1 54 72-126 2-60 (70)
129 PF11608 Limkain-b1: Limkain b 98.4 9.7E-07 2.1E-11 59.1 6.4 69 167-245 3-76 (90)
130 KOG4307 RNA binding protein RB 98.4 1.5E-06 3.2E-11 78.8 9.0 168 69-244 322-512 (944)
131 cd00590 RRM RRM (RNA recogniti 98.4 6.3E-07 1.4E-11 58.9 5.2 55 52-122 4-58 (74)
132 KOG1995 Conserved Zn-finger pr 98.3 5.5E-07 1.2E-11 75.8 4.6 85 163-247 63-155 (351)
133 PF08777 RRM_3: RNA binding mo 98.2 4.7E-06 1E-10 59.6 6.5 70 167-242 2-76 (105)
134 KOG0130 RNA-binding protein RB 98.2 1.6E-06 3.6E-11 63.1 3.7 53 69-126 83-137 (170)
135 KOG0415 Predicted peptidyl pro 98.1 4.3E-06 9.3E-11 70.3 4.7 62 59-127 242-305 (479)
136 COG5175 MOT2 Transcriptional r 98.0 1.3E-05 2.7E-10 67.1 6.6 80 166-245 114-202 (480)
137 KOG4307 RNA binding protein RB 98.0 3.1E-05 6.7E-10 70.5 9.4 76 167-242 868-943 (944)
138 KOG0128 RNA-binding protein SA 98.0 4.7E-07 1E-11 83.7 -2.9 146 74-234 588-735 (881)
139 KOG2314 Translation initiation 98.0 5E-05 1.1E-09 67.6 9.0 77 166-243 58-141 (698)
140 KOG2193 IGF-II mRNA-binding pr 97.9 6.8E-07 1.5E-11 76.6 -2.8 150 49-244 4-155 (584)
141 KOG0153 Predicted RNA-binding 97.9 1.2E-05 2.5E-10 67.6 4.0 58 42-121 224-281 (377)
142 KOG4849 mRNA cleavage factor I 97.9 9.3E-06 2E-10 68.2 3.4 75 166-240 80-156 (498)
143 KOG0226 RNA-binding proteins [ 97.9 2.2E-05 4.8E-10 63.3 4.9 62 48-126 192-255 (290)
144 PF14605 Nup35_RRM_2: Nup53/35 97.8 5.1E-05 1.1E-09 47.1 5.3 52 167-225 2-53 (53)
145 KOG3152 TBP-binding protein, a 97.8 1.3E-05 2.7E-10 64.7 2.7 73 165-237 73-157 (278)
146 PF13893 RRM_5: RNA recognitio 97.8 1.4E-05 3.1E-10 50.2 2.3 43 75-126 1-44 (56)
147 KOG4660 Protein Mei2, essentia 97.7 8.4E-05 1.8E-09 66.2 6.8 172 43-245 72-249 (549)
148 KOG0116 RasGAP SH3 binding pro 97.7 5.9E-05 1.3E-09 66.5 5.2 59 49-124 291-350 (419)
149 PF05172 Nup35_RRM: Nup53/35/4 97.6 0.00079 1.7E-08 47.5 8.4 78 166-245 6-91 (100)
150 KOG4209 Splicing factor RNPS1, 97.6 4.4E-05 9.4E-10 62.3 2.3 69 42-127 97-166 (231)
151 KOG0132 RNA polymerase II C-te 97.5 8.6E-05 1.9E-09 68.5 4.1 59 44-124 419-478 (894)
152 KOG1996 mRNA splicing factor [ 97.5 0.00044 9.4E-09 57.1 7.2 65 180-244 300-365 (378)
153 PF08952 DUF1866: Domain of un 97.5 0.00077 1.7E-08 50.5 7.7 56 182-246 52-107 (146)
154 KOG4676 Splicing factor, argin 97.5 1.5E-05 3.1E-10 68.0 -1.7 177 49-246 9-226 (479)
155 KOG0533 RRM motif-containing p 97.4 0.00028 6E-09 57.7 4.9 68 42-126 79-147 (243)
156 PF10309 DUF2414: Protein of u 97.3 0.0017 3.7E-08 41.3 7.0 55 166-228 5-62 (62)
157 PF04059 RRM_2: RNA recognitio 97.3 0.00056 1.2E-08 47.9 5.1 65 47-126 2-68 (97)
158 KOG1855 Predicted RNA-binding 97.2 0.00042 9.2E-09 60.0 4.6 70 161-230 226-308 (484)
159 KOG2202 U2 snRNP splicing fact 97.1 0.00022 4.7E-09 57.8 1.6 56 189-245 92-147 (260)
160 KOG0129 Predicted RNA-binding 97.0 0.004 8.7E-08 55.3 8.8 65 163-228 256-326 (520)
161 KOG0115 RNA-binding protein p5 97.0 0.001 2.2E-08 54.0 4.1 76 167-243 32-111 (275)
162 KOG2193 IGF-II mRNA-binding pr 96.9 0.00062 1.4E-08 58.9 2.6 77 167-249 2-79 (584)
163 KOG4676 Splicing factor, argin 96.8 0.002 4.3E-08 55.3 4.5 77 167-244 8-87 (479)
164 PF15023 DUF4523: Protein of u 96.7 0.02 4.4E-07 42.5 9.1 75 162-244 82-160 (166)
165 PF08675 RNA_bind: RNA binding 96.4 0.026 5.7E-07 38.0 7.3 57 165-230 8-64 (87)
166 KOG0151 Predicted splicing reg 96.4 0.004 8.6E-08 57.4 4.3 68 42-126 170-242 (877)
167 KOG2068 MOT2 transcription fac 96.4 0.0011 2.4E-08 55.9 0.7 80 166-246 77-163 (327)
168 PF07576 BRAP2: BRCA1-associat 96.4 0.065 1.4E-06 38.5 9.6 67 167-235 13-81 (110)
169 KOG2416 Acinus (induces apopto 96.0 0.0099 2.1E-07 53.8 4.8 79 162-246 440-522 (718)
170 PF14605 Nup35_RRM_2: Nup53/35 95.8 0.029 6.3E-07 34.6 5.0 52 57-121 2-53 (53)
171 KOG4661 Hsp27-ERE-TATA-binding 95.8 0.018 3.8E-07 52.0 5.4 58 49-122 407-465 (940)
172 PF03467 Smg4_UPF3: Smg-4/UPF3 95.6 0.019 4.2E-07 45.0 4.5 80 166-245 7-97 (176)
173 KOG2314 Translation initiation 95.6 0.028 6E-07 50.8 5.8 60 67-127 69-129 (698)
174 KOG2135 Proteins containing th 95.3 0.015 3.3E-07 51.2 3.2 75 165-246 371-446 (526)
175 KOG0112 Large RNA-binding prot 95.2 0.0048 1E-07 58.3 -0.2 79 164-243 370-448 (975)
176 KOG1855 Predicted RNA-binding 95.1 0.013 2.7E-07 51.1 1.9 66 42-124 227-306 (484)
177 PF03880 DbpA: DbpA RNA bindin 95.0 0.21 4.5E-06 33.1 7.4 67 168-243 2-74 (74)
178 PF04847 Calcipressin: Calcipr 95.0 0.11 2.3E-06 41.0 6.8 62 179-246 8-71 (184)
179 PF11608 Limkain-b1: Limkain b 94.8 0.05 1.1E-06 36.8 3.8 54 52-125 7-61 (90)
180 KOG0804 Cytoplasmic Zn-finger 94.6 0.16 3.5E-06 44.8 7.5 68 166-235 74-142 (493)
181 KOG4574 RNA-binding protein (c 94.3 0.034 7.4E-07 52.5 2.9 74 168-247 300-375 (1007)
182 KOG2591 c-Mpl binding protein, 93.9 0.12 2.6E-06 46.7 5.5 70 166-242 175-248 (684)
183 KOG4849 mRNA cleavage factor I 93.9 0.043 9.2E-07 46.7 2.5 66 44-123 77-143 (498)
184 KOG1995 Conserved Zn-finger pr 93.5 0.17 3.8E-06 43.2 5.4 63 44-123 64-135 (351)
185 PF11767 SET_assoc: Histone ly 93.4 0.64 1.4E-05 30.1 6.8 55 177-240 11-65 (66)
186 PF08777 RRM_3: RNA binding mo 92.9 0.044 9.4E-07 39.1 0.8 44 69-122 12-55 (105)
187 PF07292 NID: Nmi/IFP 35 domai 92.2 0.057 1.2E-06 37.0 0.7 25 164-188 50-74 (88)
188 KOG2318 Uncharacterized conser 92.1 0.92 2E-05 41.5 8.3 80 163-242 171-304 (650)
189 KOG4210 Nuclear localization s 92.1 0.078 1.7E-06 44.9 1.5 81 165-245 87-167 (285)
190 KOG4285 Mitotic phosphoprotein 91.7 0.96 2.1E-05 38.0 7.4 70 167-244 198-268 (350)
191 KOG2253 U1 snRNP complex, subu 91.3 0.34 7.4E-06 44.8 4.8 72 163-243 37-108 (668)
192 PF05172 Nup35_RRM: Nup53/35/4 89.7 0.74 1.6E-05 32.5 4.4 62 58-127 8-77 (100)
193 KOG0115 RNA-binding protein p5 82.7 1 2.2E-05 37.0 2.4 56 51-122 35-90 (275)
194 KOG2891 Surface glycoprotein [ 78.1 0.75 1.6E-05 38.2 0.2 81 166-246 149-268 (445)
195 KOG2202 U2 snRNP splicing fact 77.8 1.6 3.5E-05 35.9 2.0 43 83-125 89-132 (260)
196 KOG2416 Acinus (induces apopto 75.5 3.2 7E-05 38.2 3.5 64 44-128 442-506 (718)
197 COG5175 MOT2 Transcriptional r 74.3 2.8 6.1E-05 35.9 2.6 46 76-126 138-188 (480)
198 KOG4410 5-formyltetrahydrofola 74.0 34 0.00074 28.8 8.7 47 166-218 330-377 (396)
199 PF08952 DUF1866: Domain of un 73.0 2.9 6.3E-05 31.5 2.2 49 70-126 44-92 (146)
200 KOG4019 Calcineurin-mediated s 71.7 3.8 8.3E-05 32.0 2.6 75 166-246 10-90 (193)
201 PF15023 DUF4523: Protein of u 68.9 11 0.00025 28.3 4.5 44 70-121 99-142 (166)
202 KOG4483 Uncharacterized conser 67.8 16 0.00035 32.2 5.8 56 165-227 390-446 (528)
203 KOG4365 Uncharacterized conser 66.2 0.81 1.8E-05 40.4 -2.2 79 167-246 4-82 (572)
204 PF15513 DUF4651: Domain of un 65.8 19 0.00041 22.9 4.4 19 181-199 9-27 (62)
205 PF03468 XS: XS domain; Inter 65.3 9 0.0002 27.8 3.3 55 168-225 10-74 (116)
206 PF14111 DUF4283: Domain of un 61.3 21 0.00046 26.6 5.0 110 70-201 29-140 (153)
207 KOG1996 mRNA splicing factor [ 59.1 20 0.00044 30.3 4.7 49 74-127 302-353 (378)
208 KOG2253 U1 snRNP complex, subu 58.7 6.4 0.00014 36.8 1.9 55 43-122 37-91 (668)
209 COG5638 Uncharacterized conser 57.9 42 0.00092 29.8 6.6 80 163-242 143-294 (622)
210 KOG4285 Mitotic phosphoprotein 52.5 34 0.00073 29.1 4.9 59 56-127 197-255 (350)
211 PF08675 RNA_bind: RNA binding 50.3 12 0.00025 25.5 1.6 41 69-121 19-59 (87)
212 PF07530 PRE_C2HC: Associated 49.2 45 0.00097 21.6 4.3 61 181-244 2-63 (68)
213 smart00596 PRE_C2HC PRE_C2HC d 45.2 40 0.00087 21.9 3.4 61 181-244 2-63 (69)
214 KOG3152 TBP-binding protein, a 43.9 11 0.00025 31.1 1.0 62 47-125 75-150 (278)
215 PF10567 Nab6_mRNP_bdg: RNA-re 43.7 46 0.001 28.2 4.5 79 166-244 15-106 (309)
216 PF07576 BRAP2: BRCA1-associat 42.8 61 0.0013 23.2 4.5 52 69-125 24-76 (110)
217 PRK11901 hypothetical protein; 40.6 1.1E+02 0.0024 26.4 6.4 62 164-230 243-306 (327)
218 COG5193 LHP1 La protein, small 39.8 13 0.00028 32.8 0.8 61 165-225 173-243 (438)
219 KOG1295 Nonsense-mediated deca 39.3 42 0.00091 29.5 3.7 68 166-234 7-78 (376)
220 KOG2295 C2H2 Zn-finger protein 36.6 4.6 0.0001 36.9 -2.5 73 166-238 231-303 (648)
221 PF11823 DUF3343: Protein of u 33.4 62 0.0013 21.0 3.1 26 210-235 3-28 (73)
222 KOG3424 40S ribosomal protein 31.3 2.1E+02 0.0045 20.9 6.2 50 65-119 30-84 (132)
223 KOG2187 tRNA uracil-5-methyltr 30.9 47 0.001 30.6 2.9 39 208-246 63-101 (534)
224 KOG4008 rRNA processing protei 29.2 48 0.001 27.2 2.3 32 165-196 39-70 (261)
225 PF11411 DNA_ligase_IV: DNA li 29.1 48 0.001 18.6 1.6 15 177-191 20-34 (36)
226 PF04026 SpoVG: SpoVG; InterP 27.9 1.4E+02 0.003 20.3 4.1 26 192-217 2-27 (84)
227 KOG4483 Uncharacterized conser 25.4 2.4E+02 0.0052 25.2 6.0 71 52-134 387-458 (528)
228 KOG0862 Synaptobrevin/VAMP-lik 25.3 68 0.0015 25.9 2.5 18 100-117 105-122 (216)
229 COG3254 Uncharacterized conser 24.6 2.6E+02 0.0056 19.8 5.0 43 180-225 26-68 (105)
230 PRK13259 regulatory protein Sp 24.0 1.6E+02 0.0036 20.4 3.9 26 192-217 2-27 (94)
231 PRK10905 cell division protein 23.4 3.5E+02 0.0077 23.4 6.6 60 165-229 246-307 (328)
232 PRK09507 cspE cold shock prote 22.5 31 0.00068 22.3 0.2 13 101-113 12-24 (69)
233 KOG4213 RNA-binding protein La 22.0 1.3E+02 0.0028 23.7 3.4 56 166-227 111-169 (205)
234 KOG2135 Proteins containing th 21.6 58 0.0012 29.6 1.6 48 68-125 383-430 (526)
235 COG1209 RfbA dTDP-glucose pyro 21.0 2.6E+02 0.0056 23.7 5.2 56 49-114 95-150 (286)
236 PF08206 OB_RNB: Ribonuclease 20.7 69 0.0015 19.8 1.5 12 102-113 6-17 (58)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=7.1e-32 Score=231.75 Aligned_cols=168 Identities=20% Similarity=0.321 Sum_probs=137.0
Q ss_pred CCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHHHHh-
Q 025313 44 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELT- 121 (255)
Q Consensus 44 ~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a~- 121 (255)
...++|| |+|||+ ++|+++|+++|.++ |.|.+|+|+.+ .+++++|||||+|.++++|++|+
T Consensus 105 ~~~~~Lf-VgnLp~-----------~~te~~L~~lF~~~-----G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~ 167 (346)
T TIGR01659 105 NSGTNLI-VNYLPQ-----------DMTDRELYALFRTI-----GPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIK 167 (346)
T ss_pred CCCcEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHH
Confidence 4455677 899998 99999999999966 99999999874 68999999999999999997776
Q ss_pred CCCCCceecCCCCCCCCCcCCCCCCCCCCcCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEec
Q 025313 122 GVPGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMD 201 (255)
Q Consensus 122 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d 201 (255)
.|+|.... +..+......+ .......++|||+|||+.+++++|+++|++||.|+.++|++|
T Consensus 168 ~LnG~~l~--------------gr~i~V~~a~p-----~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d 228 (346)
T TIGR01659 168 NLNGITVR--------------NKRLKVSYARP-----GGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRD 228 (346)
T ss_pred HcCCCccC--------------Cceeeeecccc-----cccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeec
Confidence 57774321 00010000000 011223568999999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC--EEEEEEEecCCC
Q 025313 202 KISKRSKGYAFIEYTTEEAASAALKEMNGKIING--WMIVVDVAKTTP 247 (255)
Q Consensus 202 ~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g--~~l~V~~a~~~~ 247 (255)
+.+|+++|||||+|.++++|++|++.||+..+.| ++|+|.++....
T Consensus 229 ~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 229 KLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred CCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCccc
Confidence 9999999999999999999999999999998865 799999998653
No 2
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=1.9e-30 Score=234.17 Aligned_cols=177 Identities=20% Similarity=0.254 Sum_probs=140.1
Q ss_pred CcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEE-eecCCccceEEeeeCCHHHHHHHh-C
Q 025313 45 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDECAQELT-G 122 (255)
Q Consensus 45 ~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~-~~~~~~~g~aFV~f~~~e~a~~a~-~ 122 (255)
....+| ||||++ ++++++|.++|.++ |.|.+|+++. ..+|+++|||||+|.++++|++|+ .
T Consensus 106 ~~~rLf-VGnLp~-----------~~tEe~Lr~lF~~f-----G~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~ 168 (612)
T TIGR01645 106 IMCRVY-VGSISF-----------ELREDTIRRAFDPF-----GPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQ 168 (612)
T ss_pred CCCEEE-EcCCCC-----------CCCHHHHHHHHHcc-----CCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHh
Confidence 345677 999999 99999999999955 9999999887 468999999999999999997777 5
Q ss_pred CCCCcee-cCCCCCCCCCcCCCCCCCCCCcCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEec
Q 025313 123 VPGVLSV-QPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMD 201 (255)
Q Consensus 123 ~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d 201 (255)
|||.... +........ ... .. ..............++|||+|||+.+++++|+++|+.||.|.+++|.+|
T Consensus 169 lnG~~i~GR~IkV~rp~--~~p-----~a--~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D 239 (612)
T TIGR01645 169 MNGQMLGGRNIKVGRPS--NMP-----QA--QPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARA 239 (612)
T ss_pred cCCeEEecceeeecccc--ccc-----cc--ccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEec
Confidence 7885421 211111000 000 00 0000001112234579999999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCCC
Q 025313 202 KISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTP 247 (255)
Q Consensus 202 ~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~~~ 247 (255)
+.+|+++|||||+|++.++|.+|+..|||..++|+.|+|.++..++
T Consensus 240 ~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 240 PTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred CCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCc
Confidence 9899999999999999999999999999999999999999998654
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=4.3e-29 Score=217.54 Aligned_cols=187 Identities=19% Similarity=0.260 Sum_probs=137.3
Q ss_pred CcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHHHHh-C
Q 025313 45 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELT-G 122 (255)
Q Consensus 45 ~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a~-~ 122 (255)
....+| ++|||. ++++++|.++|.++ |.|..++++.+ .++.++|||||+|.+.++|+.|+ .
T Consensus 88 ~~~~l~-v~~l~~-----------~~~~~~l~~~f~~~-----G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~ 150 (352)
T TIGR01661 88 KGANLY-VSGLPK-----------TMTQHELESIFSPF-----GQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKT 150 (352)
T ss_pred ccceEE-ECCccc-----------cCCHHHHHHHHhcc-----CCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 445677 999999 99999999999955 99999998764 46889999999999999997776 5
Q ss_pred CCCCceec--------CCCCCC-CCCcCCCC-----------C---C----------CC---------------------
Q 025313 123 VPGVLSVQ--------PDENFG-SENKDYGG-----------N---N----------LQ--------------------- 148 (255)
Q Consensus 123 ~~g~~~~~--------~~~~~~-~~~~~~~~-----------~---~----------~~--------------------- 148 (255)
|+|..... ...... ...+.... . . ..
T Consensus 151 l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (352)
T TIGR01661 151 LNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQ 230 (352)
T ss_pred hCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhh
Confidence 67642110 000000 00000000 0 0 00
Q ss_pred -----------CCcCCCCCC----------CCCCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCc
Q 025313 149 -----------NSMVPSDSS----------EASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRS 207 (255)
Q Consensus 149 -----------~~~~~~~~~----------~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~ 207 (255)
....+.... ........+.+|||+|||+.+++++|+++|++||.|.+++|++|+.+|.+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~s 310 (352)
T TIGR01661 231 QQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQC 310 (352)
T ss_pred hhcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCc
Confidence 000000000 00001122447999999999999999999999999999999999999999
Q ss_pred ceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCCCC
Q 025313 208 KGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPK 248 (255)
Q Consensus 208 rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~~~~ 248 (255)
+|||||+|.+.++|.+|+..|||..|+||.|+|.|+.++..
T Consensus 311 kG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 311 KGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred cceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 99999999999999999999999999999999999987654
No 4
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=1.2e-29 Score=214.24 Aligned_cols=196 Identities=24% Similarity=0.299 Sum_probs=149.7
Q ss_pred cCCcCCCCCCCCCCCc-ccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEE
Q 025313 31 CLDIQMSNPWNSQIGT-TLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGF 108 (255)
Q Consensus 31 ~~~~~~~~~~~~~~~s-~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aF 108 (255)
.-..+.+.|..+.+.. .-+| ||.||+ ++.|++|..+|+++ |+|.++|+|++ .+|.+|||||
T Consensus 67 k~ggPpP~weg~~p~~G~EVf-vGkIPr-----------D~~EdeLvplfEki-----G~I~elRLMmD~~sG~nRGYAF 129 (506)
T KOG0117|consen 67 KYGGPPPGWEGPPPPRGCEVF-VGKIPR-----------DVFEDELVPLFEKI-----GKIYELRLMMDPFSGDNRGYAF 129 (506)
T ss_pred ccCCCCCcccCCCCCCCceEE-ecCCCc-----------cccchhhHHHHHhc-----cceeeEEEeecccCCCCcceEE
Confidence 3344455576633332 3366 999999 99999999999988 99999999986 7899999999
Q ss_pred eeeCCHHHHHHHhCCCCCceecCCCCCC----------------------------------------------------
Q 025313 109 CCELDDECAQELTGVPGVLSVQPDENFG---------------------------------------------------- 136 (255)
Q Consensus 109 V~f~~~e~a~~a~~~~g~~~~~~~~~~~---------------------------------------------------- 136 (255)
|+|.+.+.|++|++......+++.+...
T Consensus 130 Vtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRG 209 (506)
T KOG0117|consen 130 VTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRG 209 (506)
T ss_pred EEeecHHHHHHHHHHhhCccccCCCEeEEEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccc
Confidence 9999999997776642222221111100
Q ss_pred --------------------CCCcCCCCCCCCCCcCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEE
Q 025313 137 --------------------SENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEV 196 (255)
Q Consensus 137 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v 196 (255)
...-..+++.....|+.+............+.|||+||+.++|++.|+++|++||.|+.|
T Consensus 210 FaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRV 289 (506)
T KOG0117|consen 210 FAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERV 289 (506)
T ss_pred eEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEe
Confidence 001111244444455555554444555667899999999999999999999999999999
Q ss_pred EEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCCCCCCC
Q 025313 197 KIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPKYSR 251 (255)
Q Consensus 197 ~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~~~~~~~ 251 (255)
+.++| ||||.|.++++|-+|++.+||+.|.|..|.|.+|++..+...
T Consensus 290 kk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k~ 336 (506)
T KOG0117|consen 290 KKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKKK 336 (506)
T ss_pred ecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhhcc
Confidence 99877 999999999999999999999999999999999998765443
No 5
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.96 E-value=8.4e-29 Score=222.82 Aligned_cols=177 Identities=23% Similarity=0.320 Sum_probs=140.1
Q ss_pred CCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEE-eecCCccceEEeeeCCHHHHHHHhC
Q 025313 44 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDECAQELTG 122 (255)
Q Consensus 44 ~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~-~~~~~~~g~aFV~f~~~e~a~~a~~ 122 (255)
...++|| |+|||. ++++++|.++|.++ |.|.+|+++. ..+++++|||||+|.+.++|++|+.
T Consensus 87 ~~~~~l~-V~nlp~-----------~~~~~~l~~~F~~~-----G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~ 149 (457)
T TIGR01622 87 RDDRTVF-VLQLAL-----------KARERDLYEFFSKV-----GKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA 149 (457)
T ss_pred cCCcEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH
Confidence 3456788 999999 99999999999966 9999999887 4578999999999999999999999
Q ss_pred CCCCceec-CCCCCCCCCcCCCCCCCCCCcCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEec
Q 025313 123 VPGVLSVQ-PDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMD 201 (255)
Q Consensus 123 ~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d 201 (255)
++|..... +........... . . .. .............+|||+|||..+++++|+++|++||.|..|.++.+
T Consensus 150 l~g~~~~g~~i~v~~~~~~~~--~-~-~~----~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d 221 (457)
T TIGR01622 150 LTGQMLLGRPIIVQSSQAEKN--R-A-AK----AATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRD 221 (457)
T ss_pred hCCCEECCeeeEEeecchhhh--h-h-hh----cccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEc
Confidence 98864321 111100000000 0 0 00 00000111123689999999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecC
Q 025313 202 KISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKT 245 (255)
Q Consensus 202 ~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~ 245 (255)
..+|.++|||||+|.+.++|.+|+..|||..|.|++|+|.++..
T Consensus 222 ~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 222 PETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 98999999999999999999999999999999999999999763
No 6
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=6.7e-29 Score=197.59 Aligned_cols=180 Identities=19% Similarity=0.285 Sum_probs=139.6
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEE-eecCCccceEEeeeCCHHHH-HH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDECA-QE 119 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~-~~~~~~~g~aFV~f~~~e~a-~~ 119 (255)
+...+.+.+++|+|.. +++-|+|++.|. .||.|-++++++ ..|+++||||||.|...++| .+
T Consensus 57 ~t~~~hfhvfvgdls~-----------eI~~e~lr~aF~-----pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnA 120 (321)
T KOG0148|consen 57 PTSNQHFHVFVGDLSP-----------EIDNEKLREAFA-----PFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENA 120 (321)
T ss_pred CccccceeEEehhcch-----------hcchHHHHHHhc-----cccccccceEeecccCCcccceeEEeccchHHHHHH
Confidence 4444455566999999 999999999999 779999999888 56899999999999999999 55
Q ss_pred HhCCCCCceecCCC-CCCCCCcCCCCCCCCCCcCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEE
Q 025313 120 LTGVPGVLSVQPDE-NFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKI 198 (255)
Q Consensus 120 a~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i 198 (255)
+..|||....+... .--..+|......-.. ............+++|||+|++..++|++|++.|++||.|.+|++
T Consensus 121 I~~MnGqWlG~R~IRTNWATRKp~e~n~~~l----tfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRv 196 (321)
T KOG0148|consen 121 IQQMNGQWLGRRTIRTNWATRKPSEMNGKPL----TFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRV 196 (321)
T ss_pred HHHhCCeeeccceeeccccccCccccCCCCc----cHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEE
Confidence 56789976432211 1111111110000000 000011233456899999999999999999999999999999999
Q ss_pred EecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCCC
Q 025313 199 IMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTP 247 (255)
Q Consensus 199 ~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~~~ 247 (255)
.++ +|||||.|+++|+|..||..+||.+++|+.+++.|.+...
T Consensus 197 Fk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 197 FKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGD 239 (321)
T ss_pred ecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCC
Confidence 988 6899999999999999999999999999999999998764
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=1.8e-28 Score=213.67 Aligned_cols=165 Identities=23% Similarity=0.388 Sum_probs=135.1
Q ss_pred cccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHHHHhC-C
Q 025313 46 TTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELTG-V 123 (255)
Q Consensus 46 s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a~~-~ 123 (255)
.+.|| |+|||. ++|+++|+++|.++ |+|.+|+++.+ .+|+++|||||+|.++++|++|+. |
T Consensus 3 ~~~l~-V~nLp~-----------~~~e~~l~~~F~~~-----G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l 65 (352)
T TIGR01661 3 KTNLI-VNYLPQ-----------TMTQEEIRSLFTSI-----GEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSL 65 (352)
T ss_pred CcEEE-EeCCCC-----------CCCHHHHHHHHHcc-----CCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhc
Confidence 34577 999999 99999999999965 99999999884 579999999999999999977774 6
Q ss_pred CCCceecCCCCCCCCCcCCCCCCCCCCcCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCC
Q 025313 124 PGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKI 203 (255)
Q Consensus 124 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~ 203 (255)
+|... .+..+......+ ........+|||+|||..+++++|+++|++||.|..++++.+..
T Consensus 66 ~g~~l--------------~g~~i~v~~a~~-----~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~ 126 (352)
T TIGR01661 66 NGLRL--------------QNKTIKVSYARP-----SSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNV 126 (352)
T ss_pred ccEEE--------------CCeeEEEEeecc-----cccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCC
Confidence 77432 111111111000 11122356899999999999999999999999999999999988
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHhCCceeCC--EEEEEEEecCC
Q 025313 204 SKRSKGYAFIEYTTEEAASAALKEMNGKIING--WMIVVDVAKTT 246 (255)
Q Consensus 204 ~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g--~~l~V~~a~~~ 246 (255)
+|.++|||||+|++.++|++|++.|||..+.| ++|.|.++..+
T Consensus 127 ~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~ 171 (352)
T TIGR01661 127 TGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNP 171 (352)
T ss_pred CCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCC
Confidence 89999999999999999999999999999887 67899998654
No 8
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=4.4e-29 Score=209.91 Aligned_cols=182 Identities=23% Similarity=0.322 Sum_probs=143.4
Q ss_pred CCCCCCCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEE-eecCCccceEEeeeCCHH
Q 025313 37 SNPWNSQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDE 115 (255)
Q Consensus 37 ~~~~~~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~-~~~~~~~g~aFV~f~~~e 115 (255)
++..+++.+.-.+| ||.+|. .++|.||+++|+++ |.|.+|.+.+ +.++.++|||||.|.+.+
T Consensus 25 ~~~d~~d~~~vKlf-VgqIpr-----------t~sE~dlr~lFe~y-----g~V~einl~kDk~t~~s~gcCFv~~~trk 87 (510)
T KOG0144|consen 25 DHTDNPDGSAVKLF-VGQIPR-----------TASEKDLRELFEKY-----GNVYEINLIKDKSTGQSKGCCFVKYYTRK 87 (510)
T ss_pred CCCCCCCchhhhhe-eccCCc-----------cccHHHHHHHHHHh-----CceeEEEeecccccCcccceEEEEeccHH
Confidence 44455667777788 999999 99999999999977 9999999877 668999999999999999
Q ss_pred HHHHHhC-CCCCceecCCCCCCCCCcCCCCCCCCCCcCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEE
Q 025313 116 CAQELTG-VPGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELV 194 (255)
Q Consensus 116 ~a~~a~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~ 194 (255)
+|.+|+. ++.+ +.+.|........+.+.. ...-...++|||+-|+..++|.+++++|++||.|+
T Consensus 88 ~a~~a~~Alhn~-------------ktlpG~~~pvqvk~Ad~E--~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ie 152 (510)
T KOG0144|consen 88 EADEAINALHNQ-------------KTLPGMHHPVQVKYADGE--RERIVEERKLFVGMLSKQCTENEVREIFSRFGHIE 152 (510)
T ss_pred HHHHHHHHhhcc-------------cccCCCCcceeecccchh--hhccccchhhhhhhccccccHHHHHHHHHhhCccc
Confidence 9966553 2221 222222222221111111 11113478999999999999999999999999999
Q ss_pred EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce-eCC--EEEEEEEecCCCCCCC
Q 025313 195 EVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKI-ING--WMIVVDVAKTTPKYSR 251 (255)
Q Consensus 195 ~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~-l~g--~~l~V~~a~~~~~~~~ 251 (255)
+|.|++|. .|.+||||||.|.+++-|..|++.|||.. +.| .+|.|.||+++..+..
T Consensus 153 d~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~ 211 (510)
T KOG0144|consen 153 DCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDG 211 (510)
T ss_pred hhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCchH
Confidence 99999998 89999999999999999999999999964 666 6899999998765443
No 9
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.96 E-value=3.6e-27 Score=214.93 Aligned_cols=189 Identities=19% Similarity=0.249 Sum_probs=135.8
Q ss_pred CCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCc-cccc-eEEeecCCccceEEeeeCCHHHHHHHh
Q 025313 44 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNE-KDAQ-MCIYHVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 44 ~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v-~~v~-i~~~~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
...++|| |||||+ ++|+++|.++|.+++....... .+.. +.....+..+|||||+|.+.++|..|+
T Consensus 173 ~~~r~ly-VgnLp~-----------~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al 240 (509)
T TIGR01642 173 RQARRLY-VGGIPP-----------EFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAM 240 (509)
T ss_pred ccccEEE-EeCCCC-----------CCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhh
Confidence 3456777 899998 9999999999998865542211 1121 222345677999999999999999999
Q ss_pred CCCCCcee-cCCCCCCCCCcCCC--------CCCC-CCCcCCCC--CCCCCCCCCccceEEEcCCCCCCCHHHHHHHHhc
Q 025313 122 GVPGVLSV-QPDENFGSENKDYG--------GNNL-QNSMVPSD--SSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEG 189 (255)
Q Consensus 122 ~~~g~~~~-~~~~~~~~~~~~~~--------~~~~-~~~~~~~~--~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~ 189 (255)
+|+|+... .+..+. ....+. .... ........ ............+|||+|||..+++++|+++|+.
T Consensus 241 ~l~g~~~~g~~l~v~--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~ 318 (509)
T TIGR01642 241 ALDSIIYSNVFLKIR--RPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLES 318 (509)
T ss_pred cCCCeEeeCceeEec--CccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 99986321 111111 000000 0000 00000000 0011112234689999999999999999999999
Q ss_pred CCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCC
Q 025313 190 FGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTT 246 (255)
Q Consensus 190 fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~~ 246 (255)
||.|..+.|+.+..+|.++|||||+|.+.++|..|+..|||..|+|++|.|.++...
T Consensus 319 ~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 319 FGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred cCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 999999999999989999999999999999999999999999999999999998643
No 10
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.95 E-value=4.1e-27 Score=212.33 Aligned_cols=178 Identities=22% Similarity=0.317 Sum_probs=130.4
Q ss_pred cccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhC-CC
Q 025313 46 TTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG-VP 124 (255)
Q Consensus 46 s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~-~~ 124 (255)
...|| |+|||. ++++++|.++|.++ |.|.+++|+++.+|+++|||||+|.+.++|++|++ |+
T Consensus 58 ~~~lF-VgnLp~-----------~~tEd~L~~~F~~~-----G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~ln 120 (578)
T TIGR01648 58 GCEVF-VGKIPR-----------DLYEDELVPLFEKA-----GPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLN 120 (578)
T ss_pred CCEEE-eCCCCC-----------CCCHHHHHHHHHhh-----CCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcC
Confidence 45577 999999 99999999999966 99999999998899999999999999999977765 46
Q ss_pred CCcee--cCCC---------CCC----CC-------------------------------CcCC----------------
Q 025313 125 GVLSV--QPDE---------NFG----SE-------------------------------NKDY---------------- 142 (255)
Q Consensus 125 g~~~~--~~~~---------~~~----~~-------------------------------~~~~---------------- 142 (255)
+.... +... .+. .. .+.+
T Consensus 121 g~~i~~Gr~l~V~~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~Air 200 (578)
T TIGR01648 121 NYEIRPGRLLGVCISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARR 200 (578)
T ss_pred CCeecCCccccccccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHH
Confidence 53210 0000 000 00 0000
Q ss_pred ---------CCCCCCCCcCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHhcC--CCEEEEEEEecCCCCCcceEE
Q 025313 143 ---------GGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGF--GELVEVKIIMDKISKRSKGYA 211 (255)
Q Consensus 143 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~f--G~i~~v~i~~d~~~g~~rg~a 211 (255)
.+..+...+..+............++|||+|||+.+++++|+++|++| |.|+.|++++ +||
T Consensus 201 kL~~gki~l~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfA 272 (578)
T TIGR01648 201 KLMPGRIQLWGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYA 272 (578)
T ss_pred HhhccceEecCceEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeE
Confidence 000000000011111111112335789999999999999999999999 9999998764 499
Q ss_pred EEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCCCC
Q 025313 212 FIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPK 248 (255)
Q Consensus 212 FV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~~~~ 248 (255)
||+|++.++|++|++.|||..|.|+.|+|+|+++..+
T Consensus 273 FVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 273 FVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred EEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCc
Confidence 9999999999999999999999999999999987643
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.94 E-value=6.6e-27 Score=215.42 Aligned_cols=184 Identities=18% Similarity=0.279 Sum_probs=137.1
Q ss_pred CcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh-CC
Q 025313 45 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT-GV 123 (255)
Q Consensus 45 ~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~-~~ 123 (255)
..+.+| |+||+. ++|+++|.++|.++ |.|.+++++.+.+|.++|||||+|.+.++|.+|+ .+
T Consensus 177 ~~~~l~-V~nl~~-----------~~tee~L~~~F~~f-----G~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l 239 (562)
T TIGR01628 177 KFTNLY-VKNLDP-----------SVNEDKLRELFAKF-----GEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEM 239 (562)
T ss_pred CCCeEE-EeCCCC-----------cCCHHHHHHHHHhc-----CCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHh
Confidence 345577 899988 99999999999955 9999999998889999999999999999996665 46
Q ss_pred CCCceec---CCCCCCCCCcCCCCCCCCCCcCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEe
Q 025313 124 PGVLSVQ---PDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIM 200 (255)
Q Consensus 124 ~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~ 200 (255)
+|..... .....................................+|||+|||+.+++++|+++|++||.|.+++++.
T Consensus 240 ~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~ 319 (562)
T TIGR01628 240 NGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVML 319 (562)
T ss_pred CCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEE
Confidence 7653210 0000000000000000000000000000011123467899999999999999999999999999999999
Q ss_pred cCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCC
Q 025313 201 DKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTT 246 (255)
Q Consensus 201 d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~~ 246 (255)
|. +|.++|||||+|.+.++|.+|+..|||..++|++|.|.+|..+
T Consensus 320 d~-~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k 364 (562)
T TIGR01628 320 DE-KGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRK 364 (562)
T ss_pred CC-CCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCc
Confidence 94 8999999999999999999999999999999999999999865
No 12
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=1.5e-26 Score=183.33 Aligned_cols=162 Identities=23% Similarity=0.403 Sum_probs=136.7
Q ss_pred ccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEE-eecCCccceEEeeeCCHHHHHHHhC-CCCC
Q 025313 49 LFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDECAQELTG-VPGV 126 (255)
Q Consensus 49 ~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~-~~~~~~~g~aFV~f~~~e~a~~a~~-~~g~ 126 (255)
|+ |.-||. ..|+++++.+|..+ |.|+++++++ +-+|++-|||||.|.++++|++|+. +||.
T Consensus 44 LI-vNYLPQ-----------~MTqdE~rSLF~Si-----GeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGL 106 (360)
T KOG0145|consen 44 LI-VNYLPQ-----------NMTQDELRSLFGSI-----GEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGL 106 (360)
T ss_pred ee-eeeccc-----------ccCHHHHHHHhhcc-----cceeeeeeeeccccccccccceeeecChHHHHHHHhhhcce
Confidence 44 777777 99999999999977 9999999888 5589999999999999999976663 4554
Q ss_pred ceecCCCCCCCCCcCCCCCCCCCCcCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCC
Q 025313 127 LSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKR 206 (255)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~ 206 (255)
. ++.+.++..............+|||++||..+|..||+++|++||.|...+|+.|..+|.
T Consensus 107 r-------------------LQ~KTIKVSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~ 167 (360)
T KOG0145|consen 107 R-------------------LQNKTIKVSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGL 167 (360)
T ss_pred e-------------------eccceEEEEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccce
Confidence 2 333333333333344445678899999999999999999999999999999999999999
Q ss_pred cceEEEEEeCCHHHHHHHHHHhCCceeCC--EEEEEEEecCC
Q 025313 207 SKGYAFIEYTTEEAASAALKEMNGKIING--WMIVVDVAKTT 246 (255)
Q Consensus 207 ~rg~aFV~F~~~~~A~~Al~~l~g~~l~g--~~l~V~~a~~~ 246 (255)
+||.|||.|+.+.+|+.|++.|||..-.| .+|.|.+|..+
T Consensus 168 srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannP 209 (360)
T KOG0145|consen 168 SRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNP 209 (360)
T ss_pred ecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCc
Confidence 99999999999999999999999998877 47999998754
No 13
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.93 E-value=2.2e-26 Score=173.40 Aligned_cols=169 Identities=23% Similarity=0.313 Sum_probs=135.7
Q ss_pred ccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEE-eecCCccceEEeeeCCHHHHHHHhCCCC
Q 025313 47 TLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDECAQELTGVPG 125 (255)
Q Consensus 47 ~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~-~~~~~~~g~aFV~f~~~e~a~~a~~~~g 125 (255)
.++| +|||+. .++++.|+++|-|+ |+|.+++|.+ +-+..++|||||+|.++|+|+.|+++-.
T Consensus 10 ~tiy-vgnld~-----------kvs~~~l~EL~iqa-----gpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln 72 (203)
T KOG0131|consen 10 ATLY-VGNLDE-----------KVSEELLYELFIQA-----GPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILN 72 (203)
T ss_pred ceEE-EecCCH-----------HHHHHHHHHHHHhc-----CceeeeecchhhhcccccceeEEEEechhhhHHHHHHHH
Confidence 4577 999999 99999999999999 9999999998 4567799999999999999988877522
Q ss_pred CceecCCCCCCCCCcCCCCCCCCCCcCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEE-EEEecCCC
Q 025313 126 VLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEV-KIIMDKIS 204 (255)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v-~i~~d~~~ 204 (255)
+.... +..+.-.... ........+.+|||+||++.+++..|.+.|+.||.+... ++++|..|
T Consensus 73 ~VkLY-------------grpIrv~kas----~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~t 135 (203)
T KOG0131|consen 73 MVKLY-------------GRPIRVNKAS----AHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDT 135 (203)
T ss_pred HHHhc-------------CceeEEEecc----cccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccC
Confidence 22111 1111000000 001111235889999999999999999999999998764 78999999
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCCCCC
Q 025313 205 KRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPKY 249 (255)
Q Consensus 205 g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~~~~~ 249 (255)
|.++|+|||.|++.+.+.+|+..+||..+.+++++|.++..+...
T Consensus 136 g~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 136 GNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred CCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCCC
Confidence 999999999999999999999999999999999999999876543
No 14
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.93 E-value=3.2e-25 Score=204.25 Aligned_cols=171 Identities=26% Similarity=0.426 Sum_probs=136.6
Q ss_pred CcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh-CC
Q 025313 45 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT-GV 123 (255)
Q Consensus 45 ~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~-~~ 123 (255)
+...+| |+||+. ++++++|.++|.++ |.|.++++..+.+|+++|||||+|.+.++|++|+ ++
T Consensus 87 ~~~~vf-V~nLp~-----------~~~~~~L~~~F~~~-----G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~l 149 (562)
T TIGR01628 87 GVGNIF-VKNLDK-----------SVDNKALFDTFSKF-----GNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKV 149 (562)
T ss_pred CCCceE-EcCCCc-----------cCCHHHHHHHHHhc-----CCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHh
Confidence 445677 999999 99999999999955 9999999998889999999999999999996666 56
Q ss_pred CCCceecCCCCCCCCCcCCCCCCCCCCcCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCC
Q 025313 124 PGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKI 203 (255)
Q Consensus 124 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~ 203 (255)
+|...-. . ....+....... .........++|||+|||..+++++|+++|+.||.|.++.+..+.
T Consensus 150 ng~~~~~-~-------~i~v~~~~~~~~------~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~- 214 (562)
T TIGR01628 150 NGMLLND-K-------EVYVGRFIKKHE------REAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG- 214 (562)
T ss_pred cccEecC-c-------eEEEeccccccc------cccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-
Confidence 7753210 0 000000000000 001122335789999999999999999999999999999999986
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHhCCceeC----CEEEEEEEecCCC
Q 025313 204 SKRSKGYAFIEYTTEEAASAALKEMNGKIIN----GWMIVVDVAKTTP 247 (255)
Q Consensus 204 ~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~----g~~l~V~~a~~~~ 247 (255)
+|+++|||||+|.+.++|.+|++.|||..+. |+.|.|.++..+.
T Consensus 215 ~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~ 262 (562)
T TIGR01628 215 SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRA 262 (562)
T ss_pred CCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChh
Confidence 7999999999999999999999999999999 9999999887653
No 15
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=2.2e-24 Score=186.33 Aligned_cols=185 Identities=22% Similarity=0.313 Sum_probs=135.3
Q ss_pred ccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEE-eecCCccceEEeeeCCHHHHHHHhCC-C
Q 025313 47 TLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDECAQELTGV-P 124 (255)
Q Consensus 47 ~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~-~~~~~~~g~aFV~f~~~e~a~~a~~~-~ 124 (255)
.+|| |++||+ +++.++|.++|++. |+|+.+.+.. ...+.+||||||+|.-.|+++.|++. .
T Consensus 6 ~Tlf-V~~lp~-----------~~~~~qL~e~FS~v-----GPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~ 68 (678)
T KOG0127|consen 6 ATLF-VSRLPF-----------SSTGEQLEEFFSYV-----GPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETE 68 (678)
T ss_pred ceEE-EecCCC-----------ccchhHHHHhhhcc-----cCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhh
Confidence 5688 999999 99999999999966 9999999887 44568999999999999999766653 2
Q ss_pred CC-ceecCCCCCCCCCcCCC-----CCCCC-CCcCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEE
Q 025313 125 GV-LSVQPDENFGSENKDYG-----GNNLQ-NSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVK 197 (255)
Q Consensus 125 g~-~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~ 197 (255)
+. +..+.........+... +.... ................+..+|.|+||||.+.+.+|+.+|+.||.|..+.
T Consensus 69 ~~kf~Gr~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~ 148 (678)
T KOG0127|consen 69 QSKFEGRILNVDPAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIV 148 (678)
T ss_pred cCcccceecccccccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEE
Confidence 21 11111111111111111 00000 0000000000011123478999999999999999999999999999999
Q ss_pred EEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCCCCC
Q 025313 198 IIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPKY 249 (255)
Q Consensus 198 i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~~~~~ 249 (255)
|++.. .|+-.|||||+|.+..+|.+|++.+||+.|+||+|-|.||.++...
T Consensus 149 IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~y 199 (678)
T KOG0127|consen 149 IPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTY 199 (678)
T ss_pred cccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccc
Confidence 99777 5555699999999999999999999999999999999999987644
No 16
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.92 E-value=4.2e-24 Score=192.85 Aligned_cols=167 Identities=17% Similarity=0.178 Sum_probs=123.7
Q ss_pred cccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhC---
Q 025313 46 TTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG--- 122 (255)
Q Consensus 46 s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~--- 122 (255)
|+.+| |+|||. ++|+++|.++|.+ ||.|.+++++. ++|||||+|.+.++|++|++
T Consensus 2 s~vv~-V~nLp~-----------~~te~~L~~~f~~-----fG~V~~v~i~~-----~k~~afVef~~~e~A~~Ai~~~~ 59 (481)
T TIGR01649 2 SPVVH-VRNLPQ-----------DVVEADLVEALIP-----FGPVSYVMMLP-----GKRQALVEFEDEESAKACVNFAT 59 (481)
T ss_pred ccEEE-EcCCCC-----------CCCHHHHHHHHHh-----cCCeeEEEEEC-----CCCEEEEEeCchHHHHHHHHHhh
Confidence 56778 999999 9999999999994 49999999873 47999999999999988875
Q ss_pred CCCCc-eecCCCCCCCCCcCCCCCCCCCCcCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEec
Q 025313 123 VPGVL-SVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMD 201 (255)
Q Consensus 123 ~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d 201 (255)
+++.. ..++........+.... +..............+|||+||++.+++++|+++|+.||.|..|.|.++
T Consensus 60 ~~~~~l~g~~l~v~~s~~~~~~~--------~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~ 131 (481)
T TIGR01649 60 SVPIYIRGQPAFFNYSTSQEIKR--------DGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTK 131 (481)
T ss_pred cCCceEcCeEEEEEecCCccccc--------CCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEec
Confidence 34321 11111111111010000 0000000111223457999999999999999999999999999999876
Q ss_pred CCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC--EEEEEEEecCC
Q 025313 202 KISKRSKGYAFIEYTTEEAASAALKEMNGKIING--WMIVVDVAKTT 246 (255)
Q Consensus 202 ~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g--~~l~V~~a~~~ 246 (255)
. .+|+|||+|.+.++|.+|++.|||..|.| +.|+|.|++..
T Consensus 132 ~----~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~ 174 (481)
T TIGR01649 132 N----NVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPT 174 (481)
T ss_pred C----CceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCC
Confidence 4 24699999999999999999999999964 68999999864
No 17
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.91 E-value=2.5e-23 Score=187.85 Aligned_cols=178 Identities=17% Similarity=0.209 Sum_probs=125.2
Q ss_pred cccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh-CCC
Q 025313 46 TTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT-GVP 124 (255)
Q Consensus 46 s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~-~~~ 124 (255)
+..|| |+||+. . .+|+++|.++|.++ |.|.+|+++.+ .+|||||+|.+.++|..|+ .|+
T Consensus 275 ~~~l~-v~nL~~---------~-~vt~~~L~~lF~~y-----G~V~~vki~~~----~~g~afV~f~~~~~A~~Ai~~ln 334 (481)
T TIGR01649 275 GSVLM-VSGLHQ---------E-KVNCDRLFNLFCVY-----GNVERVKFMKN----KKETALIEMADPYQAQLALTHLN 334 (481)
T ss_pred CCEEE-EeCCCC---------C-CCCHHHHHHHHHhc-----CCeEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhC
Confidence 34566 777774 0 49999999999955 99999998754 3799999999999997776 478
Q ss_pred CCce-ecCCCCCCCCCc------------------CCCCCCCCCCcCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHH
Q 025313 125 GVLS-VQPDENFGSENK------------------DYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRA 185 (255)
Q Consensus 125 g~~~-~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~ 185 (255)
|... .++......... .+....... ..............++.+|||+|||..+++++|++
T Consensus 335 g~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r-~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~ 413 (481)
T TIGR01649 335 GVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHR-FKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKE 413 (481)
T ss_pred CCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCcccc-CCCcccccccccCCCCcEEEEecCCCCCCHHHHHH
Confidence 7521 111111111000 000000000 00000000011224578999999999999999999
Q ss_pred HHhcCCC--EEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEE------EEEEEecCC
Q 025313 186 AFEGFGE--LVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWM------IVVDVAKTT 246 (255)
Q Consensus 186 ~F~~fG~--i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~------l~V~~a~~~ 246 (255)
+|++||. |..+++.... ++ ++|+|||+|.+.++|.+|+..|||+.|.|+. |+|++++++
T Consensus 414 lF~~~G~~~i~~ik~~~~~-~~-~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 414 LFAENGVHKVKKFKFFPKD-NE-RSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred HHHhcCCccceEEEEecCC-CC-cceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 9999998 8888887654 33 5889999999999999999999999999984 999998764
No 18
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.90 E-value=2.3e-22 Score=183.42 Aligned_cols=182 Identities=17% Similarity=0.218 Sum_probs=128.3
Q ss_pred cccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHHHHh-CC
Q 025313 46 TTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELT-GV 123 (255)
Q Consensus 46 s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a~-~~ 123 (255)
.+.|| |||||. .+|+++|.++|.++ |.|..+.++.+ .+|.++|||||+|.+.++|+.|+ .|
T Consensus 295 ~~~l~-v~nlp~-----------~~~~~~l~~~f~~~-----G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l 357 (509)
T TIGR01642 295 KDRIY-IGNLPL-----------YLGEDQIKELLESF-----GDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAAL 357 (509)
T ss_pred CCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHc
Confidence 35677 899988 99999999999955 99999998774 57999999999999999996666 57
Q ss_pred CCCcee------cCCCCCCCCCcCCCCCC--CCCCcCCCC--CCCCCCCCCccceEEEcCCCCCC----------CHHHH
Q 025313 124 PGVLSV------QPDENFGSENKDYGGNN--LQNSMVPSD--SSEASPTQIKTKKLFVTGLSFYT----------SEKTL 183 (255)
Q Consensus 124 ~g~~~~------~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~l~V~nLp~~~----------t~~~L 183 (255)
+|.... ......... ....... ......+.. .........++.+|+|.|+...- ..++|
T Consensus 358 ~g~~~~~~~l~v~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl 436 (509)
T TIGR01642 358 NGKDTGDNKLHVQRACVGANQ-ATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDV 436 (509)
T ss_pred CCCEECCeEEEEEECccCCCC-CCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHH
Confidence 875321 111100000 0000000 000000000 00001123457889999996421 13678
Q ss_pred HHHHhcCCCEEEEEEEecC---CCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecC
Q 025313 184 RAAFEGFGELVEVKIIMDK---ISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKT 245 (255)
Q Consensus 184 ~~~F~~fG~i~~v~i~~d~---~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~ 245 (255)
+++|++||.|+.|.|+++. .++...|+|||+|++.++|++|+..|||..|+|+.|.|.|...
T Consensus 437 ~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 437 KTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred HHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 9999999999999998753 3456789999999999999999999999999999999999764
No 19
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=3.2e-23 Score=171.56 Aligned_cols=174 Identities=21% Similarity=0.276 Sum_probs=135.9
Q ss_pred ccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEee-cCCccceEEeeeCCHHHHHHHh-CCCCC
Q 025313 49 LFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYH-VSWQSNFGFCCELDDECAQELT-GVPGV 126 (255)
Q Consensus 49 ~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~-~~~~~g~aFV~f~~~e~a~~a~-~~~g~ 126 (255)
++ ||.+++ ++.|+.|+..|. .||+|++|.|..+. +++++|||||+|+-+|.|+-|+ .|||.
T Consensus 116 vY-VGSIsf-----------El~EDtiR~AF~-----PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~ 178 (544)
T KOG0124|consen 116 VY-VGSISF-----------ELREDTIRRAFD-----PFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQ 178 (544)
T ss_pred ee-eeeeEE-----------EechHHHHhhcc-----CCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccc
Confidence 55 888888 889999999999 78999999998844 7999999999999999996555 57887
Q ss_pred ceecCCCCCCCCCcCCCCCCCCCCcCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCC
Q 025313 127 LSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKR 206 (255)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~ 206 (255)
+...... ..+....-....+--.........-.+|||..+.++++++||+..|+.||+|+.|.+.++..++.
T Consensus 179 mlGGRNi--------KVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~ 250 (544)
T KOG0124|consen 179 MLGGRNI--------KVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRG 250 (544)
T ss_pred cccCccc--------cccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCC
Confidence 6421111 01100000000000000012233467899999999999999999999999999999999998889
Q ss_pred cceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCCC
Q 025313 207 SKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTP 247 (255)
Q Consensus 207 ~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~~~ 247 (255)
++|||||+|.+..+...|+..||=..++|+.|+|..+..++
T Consensus 251 HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP 291 (544)
T KOG0124|consen 251 HKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPP 291 (544)
T ss_pred ccceeeEEeccccchHHHhhhcchhhcccceEecccccCCC
Confidence 99999999999999999999999999999999999887654
No 20
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=1.5e-21 Score=154.98 Aligned_cols=220 Identities=18% Similarity=0.294 Sum_probs=156.5
Q ss_pred CCcceeeeecChHhHHHhhc-c---ccC----CcCCCCCCCCCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHH
Q 025313 9 DTHFGFCCNVDEETSRELAH-Y---SCL----DIQMSNPWNSQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYA 80 (255)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~-~---~~~----~~~~~~~~~~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~ 80 (255)
+-.|||.-+++++...+.-. . ... ..+..+.+...+...-|+ |.+||. ..|..+|+++|.
T Consensus 82 SLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPSs~~Ik~aNLY-vSGlPk-----------tMtqkelE~iFs 149 (360)
T KOG0145|consen 82 SLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPSSDSIKDANLY-VSGLPK-----------TMTQKELEQIFS 149 (360)
T ss_pred ccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCChhhhcccceE-EecCCc-----------cchHHHHHHHHH
Confidence 34688998888876644322 1 111 112233344555555677 999999 899999999999
Q ss_pred HHHHHhhCCccccceEE-eecCCccceEEeeeCCHHHH-HHHhCCCCCceecC--------C-------------CCCCC
Q 025313 81 QILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDECA-QELTGVPGVLSVQP--------D-------------ENFGS 137 (255)
Q Consensus 81 ~~~~~~~G~v~~v~i~~-~~~~~~~g~aFV~f~~~e~a-~~a~~~~g~~~~~~--------~-------------~~~~~ 137 (255)
++ |.|..-||.. .-+|.+||-|||.|...++| +++..+||..-... . ..+.+
T Consensus 150 ~f-----GrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~s 224 (360)
T KOG0145|consen 150 PF-----GRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQS 224 (360)
T ss_pred Hh-----hhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcC
Confidence 55 9998888766 55799999999999999999 55566787521100 0 00001
Q ss_pred CCcCCCCCCCCCCc------------------CCCC--------CCCCCCCCCccceEEEcCCCCCCCHHHHHHHHhcCC
Q 025313 138 ENKDYGGNNLQNSM------------------VPSD--------SSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFG 191 (255)
Q Consensus 138 ~~~~~~~~~~~~~~------------------~~~~--------~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG 191 (255)
..+.+.+. +.... .|.. ....+..+..+..|||-||.++++|.-|=++|++||
T Consensus 225 p~rr~~Gp-~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFG 303 (360)
T KOG0145|consen 225 PARRYGGP-MHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFG 303 (360)
T ss_pred ccccCCCc-ccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCccc
Confidence 11111110 00000 0000 001122233467999999999999999999999999
Q ss_pred CEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCC
Q 025313 192 ELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTT 246 (255)
Q Consensus 192 ~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~~ 246 (255)
.|.+|++++|..+.+.+|||||.+.+.++|.+|+..|||+.+++|.|.|.+...+
T Consensus 304 Av~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 304 AVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred ceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 9999999999988999999999999999999999999999999999999997654
No 21
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.88 E-value=9.2e-23 Score=164.20 Aligned_cols=146 Identities=24% Similarity=0.443 Sum_probs=122.1
Q ss_pred cccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhC-CCCC
Q 025313 48 LLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG-VPGV 126 (255)
Q Consensus 48 ~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~-~~g~ 126 (255)
.|| |||||. .+++.+|+.+|+++ |+|.++.|+ |-||||..++...++-|+. |+|.
T Consensus 4 KLF-IGNLp~-----------~~~~~elr~lFe~y-----gkVlECDIv-------KNYgFVHiEdktaaedairNLhgY 59 (346)
T KOG0109|consen 4 KLF-IGNLPR-----------EATEQELRSLFEQY-----GKVLECDIV-------KNYGFVHIEDKTAAEDAIRNLHGY 59 (346)
T ss_pred chh-ccCCCc-----------ccchHHHHHHHHhh-----CceEeeeee-------cccceEEeecccccHHHHhhcccc
Confidence 477 999999 99999999999977 999999999 8899999999999966664 6553
Q ss_pred ceecCCCCCCCCCcCCCCCCCCCCcCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCC
Q 025313 127 LSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKR 206 (255)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~ 206 (255)
. +....+....+. .......+|+|+||.+.++.+||+..|.+||.|.+|+|++|
T Consensus 60 t-------------------Lhg~nInVeaSk--sKsk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd----- 113 (346)
T KOG0109|consen 60 T-------------------LHGVNINVEASK--SKSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD----- 113 (346)
T ss_pred e-------------------ecceEEEEEecc--ccCCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc-----
Confidence 2 111111111111 11334788999999999999999999999999999999976
Q ss_pred cceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCC
Q 025313 207 SKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTT 246 (255)
Q Consensus 207 ~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~~ 246 (255)
|+||.|+-.++|..|++.|||+++.|++++|+++.++
T Consensus 114 ---y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 114 ---YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred ---eeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 9999999999999999999999999999999999875
No 22
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=6.2e-22 Score=171.27 Aligned_cols=145 Identities=22% Similarity=0.386 Sum_probs=119.4
Q ss_pred CCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh-CCCCCceecCCCCCCCCCcCCCCCCC
Q 025313 69 VVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT-GVPGVLSVQPDENFGSENKDYGGNNL 147 (255)
Q Consensus 69 ~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~-~~~g~~~~~~~~~~~~~~~~~~~~~~ 147 (255)
+||+..|.+.|..+ |+|.+|+++++. + +-|||||.|.++++|++|+ ++|... +.+...
T Consensus 9 ~v~e~~l~~~f~~~-----~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~--------------~~~~~~ 67 (369)
T KOG0123|consen 9 DVTEAMLFDKFSPA-----GPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDV--------------LKGKPI 67 (369)
T ss_pred cCChHHHHHHhccc-----CCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcc--------------cCCcEE
Confidence 69999999999977 999999999988 6 9999999999999996665 445321 111111
Q ss_pred CCCcCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 025313 148 QNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 227 (255)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~ 227 (255)
...+.. .....|||.||++.++..+|.++|+.||+|++|++.+|. .| ++|| ||+|+++++|.+|+..
T Consensus 68 rim~s~----------rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~ 134 (369)
T KOG0123|consen 68 RIMWSQ----------RDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEK 134 (369)
T ss_pred Eeehhc----------cCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHH
Confidence 111100 011129999999999999999999999999999999998 56 9999 9999999999999999
Q ss_pred hCCceeCCEEEEEEEecCCC
Q 025313 228 MNGKIINGWMIVVDVAKTTP 247 (255)
Q Consensus 228 l~g~~l~g~~l~V~~a~~~~ 247 (255)
+||..+.|++|.|.....+.
T Consensus 135 ~ng~ll~~kki~vg~~~~~~ 154 (369)
T KOG0123|consen 135 LNGMLLNGKKIYVGLFERKE 154 (369)
T ss_pred hcCcccCCCeeEEeeccchh
Confidence 99999999999999887654
No 23
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=1.1e-21 Score=169.87 Aligned_cols=181 Identities=24% Similarity=0.317 Sum_probs=128.5
Q ss_pred EEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhC-CCCCc-eecCCCCCC
Q 025313 59 LVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG-VPGVL-SVQPDENFG 136 (255)
Q Consensus 59 ~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~-~~g~~-~~~~~~~~~ 136 (255)
|||-+.|+ .+.+.+|..+|+++ |.|.+|.|.....|+..|||||.|....+|..|++ +||.. ..++.....
T Consensus 120 LIIRNLPf--~~k~~dLk~vFs~~-----G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDW 192 (678)
T KOG0127|consen 120 LIIRNLPF--KCKKPDLKNVFSNF-----GKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDW 192 (678)
T ss_pred EEeecCCc--ccCcHHHHHHHhhc-----ceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEee
Confidence 33344333 79999999999966 99999999998889888999999999999966655 46531 111111000
Q ss_pred CCCcCC---------------------------CCC----------CC-----C---------------CCcCC----CC
Q 025313 137 SENKDY---------------------------GGN----------NL-----Q---------------NSMVP----SD 155 (255)
Q Consensus 137 ~~~~~~---------------------------~~~----------~~-----~---------------~~~~~----~~ 155 (255)
.-.+.. .+. .. . ..... +.
T Consensus 193 AV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~ 272 (678)
T KOG0127|consen 193 AVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSG 272 (678)
T ss_pred ecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccc
Confidence 000000 000 00 0 00000 00
Q ss_pred CC----CC-----CCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 025313 156 SS----EA-----SPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALK 226 (255)
Q Consensus 156 ~~----~~-----~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~ 226 (255)
.. .. ......+.+|||+|||+.+++++|.+.|++||+|.++.|+.|+.||+++|.|||.|.+...|.+||.
T Consensus 273 ~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~ 352 (678)
T KOG0127|consen 273 KKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIE 352 (678)
T ss_pred cCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHH
Confidence 00 00 0111234799999999999999999999999999999999999999999999999999999999998
Q ss_pred Hh-----CC-ceeCCEEEEEEEecCC
Q 025313 227 EM-----NG-KIINGWMIVVDVAKTT 246 (255)
Q Consensus 227 ~l-----~g-~~l~g~~l~V~~a~~~ 246 (255)
.- .| ..|.||.|.|..|..+
T Consensus 353 ~Aspa~e~g~~ll~GR~Lkv~~Av~R 378 (678)
T KOG0127|consen 353 AASPASEDGSVLLDGRLLKVTLAVTR 378 (678)
T ss_pred hcCccCCCceEEEeccEEeeeeccch
Confidence 76 34 6789999999999765
No 24
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.87 E-value=1.3e-22 Score=175.93 Aligned_cols=166 Identities=21% Similarity=0.317 Sum_probs=128.0
Q ss_pred CCCHHHHHHHHHHHHHHhhCCccccceEE-eecCCccceEEeeeCCHHHHHHHhCCCCCceecCCCCCCCCCcCCCCCCC
Q 025313 69 VVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDECAQELTGVPGVLSVQPDENFGSENKDYGGNNL 147 (255)
Q Consensus 69 ~vt~~~l~~~F~~~~~~~~G~v~~v~i~~-~~~~~~~g~aFV~f~~~e~a~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~ 147 (255)
.+++-+|.++|... |+|.+|+++. ..+++++|.|||+|.|.++...|+.+.|...+-.+...... ....+..
T Consensus 190 r~~pRdL~efFs~~-----gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~s--Eaeknr~ 262 (549)
T KOG0147|consen 190 RNPPRDLEEFFSIV-----GKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLS--EAEKNRA 262 (549)
T ss_pred cCCchhHHHHHHhh-----cCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEeccc--HHHHHHH
Confidence 78899999999955 9999999877 55788999999999999999999999887543222111110 0000000
Q ss_pred CCCcCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 025313 148 QNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 227 (255)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~ 227 (255)
......... .....+...|||+||.+++++++|+.+|++||.|+.|.+.+|.+||+++|||||+|.+.++|.+|+..
T Consensus 263 a~~s~a~~~---k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~ 339 (549)
T KOG0147|consen 263 ANASPALQG---KGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQ 339 (549)
T ss_pred Hhccccccc---cccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHH
Confidence 000000000 11112233399999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCceeCCEEEEEEEec
Q 025313 228 MNGKIINGWMIVVDVAK 244 (255)
Q Consensus 228 l~g~~l~g~~l~V~~a~ 244 (255)
|||.+|.|+.|+|..-.
T Consensus 340 lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 340 LNGFELAGRLIKVSVVT 356 (549)
T ss_pred hccceecCceEEEEEee
Confidence 99999999999988754
No 25
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.5e-21 Score=155.88 Aligned_cols=143 Identities=27% Similarity=0.434 Sum_probs=116.0
Q ss_pred CcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhCCC
Q 025313 45 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGVP 124 (255)
Q Consensus 45 ~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~~~ 124 (255)
..++|+ ||||+. +|||+-|..+|.|+ |+|+.++|+.+ |..
T Consensus 5 ~prtly-vgnld~-----------~vte~~i~~lf~qi-----g~v~~~k~i~~----------------e~~------- 44 (321)
T KOG0148|consen 5 EPRTLY-VGNLDS-----------TVTEDFIATLFNQI-----GSVTKTKVIFD----------------ELK------- 44 (321)
T ss_pred CCceEE-eeccCh-----------hhHHHHHHHHHHhc-----cccccceeehh----------------hhc-------
Confidence 456788 999999 99999999999988 99999998733 000
Q ss_pred CCceecCCCCCCCCCcCCCCCCCCCCcCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCC
Q 025313 125 GVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKIS 204 (255)
Q Consensus 125 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~ 204 (255)
..+... | . ....+.......+||+.|...++-++|++.|.+||+|.++++++|..|
T Consensus 45 ----------------v~wa~~------p-~-nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T 100 (321)
T KOG0148|consen 45 ----------------VNWATA------P-G-NQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNT 100 (321)
T ss_pred ----------------cccccC------c-c-cCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccC
Confidence 000000 0 0 000111222567999999999999999999999999999999999999
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCCCCCCC
Q 025313 205 KRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPKYSR 251 (255)
Q Consensus 205 g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~~~~~~~ 251 (255)
+++||||||.|-+.++|++||..|||.-|++|.|+..||..++....
T Consensus 101 ~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n 147 (321)
T KOG0148|consen 101 GKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMN 147 (321)
T ss_pred CcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCccccC
Confidence 99999999999999999999999999999999999999988774433
No 26
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.86 E-value=5.7e-22 Score=176.38 Aligned_cols=176 Identities=21% Similarity=0.290 Sum_probs=134.8
Q ss_pred CCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCC----ccceEEeeeCCHHHHHH
Q 025313 44 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSW----QSNFGFCCELDDECAQE 119 (255)
Q Consensus 44 ~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~----~~g~aFV~f~~~e~a~~ 119 (255)
...+.|| +.||++ ++|.++|..+|... |.|.++.|.....+. +.|||||+|.++++|++
T Consensus 513 ~~~t~lf-vkNlnf-----------~Tt~e~l~~~F~k~-----G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~ 575 (725)
T KOG0110|consen 513 ETETKLF-VKNLNF-----------DTTLEDLEDLFSKQ-----GTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQA 575 (725)
T ss_pred ccchhhh-hhcCCc-----------ccchhHHHHHHHhc-----CeEEEEEEeccccccccccccceeEEEecCHHHHHH
Confidence 3334466 999999 99999999999965 999999988755554 55999999999999977
Q ss_pred HhC-CCCCc-eecCCCCCCCCCcCCCCCCCCCCcCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEE
Q 025313 120 LTG-VPGVL-SVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVK 197 (255)
Q Consensus 120 a~~-~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~ 197 (255)
|+. |+|.. .........+..+... ..+ ..........+|.|+|||+..+..+++++|..||.+.+|+
T Consensus 576 a~k~lqgtvldGH~l~lk~S~~k~~~---------~~g--K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvR 644 (725)
T KOG0110|consen 576 ALKALQGTVLDGHKLELKISENKPAS---------TVG--KKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVR 644 (725)
T ss_pred HHHHhcCceecCceEEEEeccCcccc---------ccc--cccccccccceeeeeccchHHHHHHHHHHHhcccceeeec
Confidence 664 46532 1111111111100000 000 0011222367999999999999999999999999999999
Q ss_pred EEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCCC
Q 025313 198 IIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTP 247 (255)
Q Consensus 198 i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~~~ 247 (255)
|+.....+.++|||||+|-++.+|.+|+.+|.++.|.||+|.+.||+...
T Consensus 645 lPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 645 LPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred cchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccch
Confidence 99886677899999999999999999999999999999999999998754
No 27
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.86 E-value=1.4e-21 Score=163.78 Aligned_cols=170 Identities=22% Similarity=0.375 Sum_probs=136.5
Q ss_pred CcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEE-eecCCccceEEeeeCCHHHHHHHhCC
Q 025313 45 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDECAQELTGV 123 (255)
Q Consensus 45 ~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~-~~~~~~~g~aFV~f~~~e~a~~a~~~ 123 (255)
.+..+| +|+|++ ++++|.|+++|.++ |.|.++.+++ ..+++++||+||+|.+++...+++..
T Consensus 5 ~~~Klf-iGgisw-----------~ttee~Lr~yf~~~-----Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~ 67 (311)
T KOG4205|consen 5 ESGKLF-IGGLSW-----------ETTEESLREYFSQF-----GEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA 67 (311)
T ss_pred CCccee-ecCcCc-----------cccHHHHHHHhccc-----CceeeEEEeccCCCCCcccccceecCCCcchheeecc
Confidence 566788 999999 99999999999855 9999999888 66799999999999999998776643
Q ss_pred -CCCceecCCCCCCCCCcCCCCCCCCCC-cCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEec
Q 025313 124 -PGVLSVQPDENFGSENKDYGGNNLQNS-MVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMD 201 (255)
Q Consensus 124 -~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d 201 (255)
+.. +.+..+... ..+..............++||++||..+++++++++|.+||.|..+.++.|
T Consensus 68 ~~h~---------------~dgr~ve~k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d 132 (311)
T KOG4205|consen 68 RTHK---------------LDGRSVEPKRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYD 132 (311)
T ss_pred cccc---------------cCCccccceeccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeec
Confidence 111 111111111 111111111122225789999999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCCC
Q 025313 202 KISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTP 247 (255)
Q Consensus 202 ~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~~~ 247 (255)
..+.+++||+||.|.+++++.+++ ...-+.|+|+.+.|..|.++.
T Consensus 133 ~~~~~~rgFgfv~~~~e~sVdkv~-~~~f~~~~gk~vevkrA~pk~ 177 (311)
T KOG4205|consen 133 KTTSRPRGFGFVTFDSEDSVDKVT-LQKFHDFNGKKVEVKRAIPKE 177 (311)
T ss_pred ccccccccceeeEeccccccceec-ccceeeecCceeeEeeccchh
Confidence 999999999999999999999998 778899999999999999875
No 28
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.86 E-value=1.7e-20 Score=142.31 Aligned_cols=85 Identities=42% Similarity=0.771 Sum_probs=80.6
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 242 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~ 242 (255)
....++|||+|||+.+++++|+++|++||.|.++.|+.|+.+|+++|||||+|++.++|++|++.|||..|+|++|+|.+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34577999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 025313 243 AKTTP 247 (255)
Q Consensus 243 a~~~~ 247 (255)
+..++
T Consensus 111 a~~~~ 115 (144)
T PLN03134 111 ANDRP 115 (144)
T ss_pred CCcCC
Confidence 97654
No 29
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.85 E-value=6.4e-20 Score=165.26 Aligned_cols=181 Identities=18% Similarity=0.284 Sum_probs=126.0
Q ss_pred CcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEee-cCCccceEEeeeCCHHHHHHHh-C
Q 025313 45 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYH-VSWQSNFGFCCELDDECAQELT-G 122 (255)
Q Consensus 45 ~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~-~~~~~g~aFV~f~~~e~a~~a~-~ 122 (255)
.+++|| |+|||. .+|+++|.++|.++ |.|..|++..+. +|+++|||||+|.+.++|.+|+ .
T Consensus 185 ~~~~l~-v~nl~~-----------~~te~~l~~~f~~~-----G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~ 247 (457)
T TIGR01622 185 NFLKLY-VGNLHF-----------NITEQELRQIFEPF-----GDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEV 247 (457)
T ss_pred CCCEEE-EcCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHh
Confidence 357788 999999 99999999999955 999999988744 5699999999999999997666 5
Q ss_pred CCCCc------eecCCCCCCC-----------CCcCCC-----------------------CCCCC--------------
Q 025313 123 VPGVL------SVQPDENFGS-----------ENKDYG-----------------------GNNLQ-------------- 148 (255)
Q Consensus 123 ~~g~~------~~~~~~~~~~-----------~~~~~~-----------------------~~~~~-------------- 148 (255)
|+|.. .+........ ...... +....
T Consensus 248 l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (457)
T TIGR01622 248 MNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQR 327 (457)
T ss_pred cCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccc
Confidence 78742 1111000000 000000 00000
Q ss_pred ----CCcCC-------------CCCCCCCCCCCccceEEEcCCCCCCC----------HHHHHHHHhcCCCEEEEEEEec
Q 025313 149 ----NSMVP-------------SDSSEASPTQIKTKKLFVTGLSFYTS----------EKTLRAAFEGFGELVEVKIIMD 201 (255)
Q Consensus 149 ----~~~~~-------------~~~~~~~~~~~~~~~l~V~nLp~~~t----------~~~L~~~F~~fG~i~~v~i~~d 201 (255)
....+ ...............|+|.||....+ .++|++.|++||.|+.+.+..
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~- 406 (457)
T TIGR01622 328 DGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDT- 406 (457)
T ss_pred cccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeC-
Confidence 00000 00000001224578899999955443 367999999999999998863
Q ss_pred CCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCC
Q 025313 202 KISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTT 246 (255)
Q Consensus 202 ~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~~ 246 (255)
..+.|++||+|.++++|.+|++.|||..++|+.|.+.+....
T Consensus 407 ---~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~ 448 (457)
T TIGR01622 407 ---KNSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVND 448 (457)
T ss_pred ---CCCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHH
Confidence 346799999999999999999999999999999999997643
No 30
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=7.3e-20 Score=158.44 Aligned_cols=166 Identities=19% Similarity=0.352 Sum_probs=135.0
Q ss_pred ccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhCC-CCCc
Q 025313 49 LFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGV-PGVL 127 (255)
Q Consensus 49 ~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~~-~g~~ 127 (255)
+| |.||+. +++..+|.++|+. ||+|.++++..+..| ++|| ||+|+++++|++|+++ ||.+
T Consensus 79 ~~-i~nl~~-----------~~~~~~~~d~f~~-----~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~l 139 (369)
T KOG0123|consen 79 VF-IKNLDE-----------SIDNKSLYDTFSE-----FGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGML 139 (369)
T ss_pred ee-ecCCCc-----------ccCcHHHHHHHHh-----hcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcc
Confidence 67 999999 9999999999994 499999999998888 9999 9999999999777765 7765
Q ss_pred eecCCCCCCCCCcCCCCCCCCCCcCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCc
Q 025313 128 SVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRS 207 (255)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~ 207 (255)
. ...+.+.+............ . . ....-..+|+.|++..++++.|.++|..+|.|.++.++.+. .|.+
T Consensus 140 l--------~~kki~vg~~~~~~er~~~~-~-~-~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~-~g~~ 207 (369)
T KOG0123|consen 140 L--------NGKKIYVGLFERKEEREAPL-G-E-YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDS-IGKS 207 (369)
T ss_pred c--------CCCeeEEeeccchhhhcccc-c-c-hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecC-CCCC
Confidence 3 22223333222222111111 0 1 23346779999999999999999999999999999999998 7779
Q ss_pred ceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecC
Q 025313 208 KGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKT 245 (255)
Q Consensus 208 rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~ 245 (255)
+||+||.|+++++|..|++.|+|..+++..+.|..+..
T Consensus 208 ~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqk 245 (369)
T KOG0123|consen 208 KGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQK 245 (369)
T ss_pred CCccceeecChhHHHHHHHhccCCcCCccceeeccccc
Confidence 99999999999999999999999999999999988765
No 31
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=1.5e-19 Score=152.75 Aligned_cols=83 Identities=27% Similarity=0.473 Sum_probs=78.9
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 025313 165 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 244 (255)
Q Consensus 165 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~ 244 (255)
.+..|||.+||.+.-+.+|-..|.+||.|++.++..|+.||.++.|+||.|++..+|..||..|||..+++++|+|.+..
T Consensus 423 eGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~ 502 (510)
T KOG0144|consen 423 EGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKR 502 (510)
T ss_pred CccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeee
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCC
Q 025313 245 TTP 247 (255)
Q Consensus 245 ~~~ 247 (255)
.+.
T Consensus 503 ~~~ 505 (510)
T KOG0144|consen 503 DRN 505 (510)
T ss_pred ccC
Confidence 553
No 32
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.80 E-value=5.8e-19 Score=140.89 Aligned_cols=84 Identities=25% Similarity=0.399 Sum_probs=80.6
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 025313 164 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 243 (255)
Q Consensus 164 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a 243 (255)
.++++|||-.||....+.||.++|-.||.|.+.++..|+.|..+|.|+||.|+++.+|+.||++|||..|+-++|+|.+.
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLK 362 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLK 362 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhc
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCC
Q 025313 244 KTTP 247 (255)
Q Consensus 244 ~~~~ 247 (255)
+++.
T Consensus 363 RPkd 366 (371)
T KOG0146|consen 363 RPKD 366 (371)
T ss_pred Cccc
Confidence 8765
No 33
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.77 E-value=5.9e-18 Score=112.58 Aligned_cols=70 Identities=44% Similarity=0.709 Sum_probs=67.5
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEE
Q 025313 169 LFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIV 239 (255)
Q Consensus 169 l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~ 239 (255)
|||+|||..+++++|+++|++||.|..+.+..+ .++.++|+|||+|.+.++|++|++.|||..++|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 5899999999999999999999999999999999986
No 34
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.74 E-value=1.2e-17 Score=143.80 Aligned_cols=85 Identities=26% Similarity=0.388 Sum_probs=80.6
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 025313 162 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 241 (255)
Q Consensus 162 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~ 241 (255)
.....++|||+|||+++++++|+++|+.||.|++|+|++|..+|+++|||||+|.++++|++|++.|||..+.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 44568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCC
Q 025313 242 VAKTT 246 (255)
Q Consensus 242 ~a~~~ 246 (255)
++++.
T Consensus 183 ~a~p~ 187 (346)
T TIGR01659 183 YARPG 187 (346)
T ss_pred ccccc
Confidence 98764
No 35
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=9.4e-18 Score=132.44 Aligned_cols=83 Identities=28% Similarity=0.419 Sum_probs=80.3
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 025313 164 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 243 (255)
Q Consensus 164 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a 243 (255)
....+|-|.||+.++++++|+++|.+||.|..+.|.+|+.||.+||||||.|.++++|.+||..|||+-++.-.|+|.|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 025313 244 KTT 246 (255)
Q Consensus 244 ~~~ 246 (255)
+|+
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 976
No 36
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.70 E-value=1.5e-16 Score=105.94 Aligned_cols=70 Identities=37% Similarity=0.658 Sum_probs=65.4
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEE
Q 025313 169 LFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIV 239 (255)
Q Consensus 169 l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~ 239 (255)
|||+|||+.+++++|+++|+.||.|..+.+..++. |.++|+|||+|.+.++|.+|++.++|..++|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999986 99999999999999999999999999999999985
No 37
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.70 E-value=1.2e-16 Score=130.96 Aligned_cols=88 Identities=32% Similarity=0.568 Sum_probs=78.8
Q ss_pred CCCCCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCE
Q 025313 157 SEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGW 236 (255)
Q Consensus 157 ~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~ 236 (255)
+.........++|+|+|||+...+.||+.+|.+||.|.+|.|+... .-|||||||+|++.++|++|-++|||..+.||
T Consensus 87 st~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGR 164 (376)
T KOG0125|consen 87 STNSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGR 164 (376)
T ss_pred CCcCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeece
Confidence 3334444557899999999999999999999999999999999885 34899999999999999999999999999999
Q ss_pred EEEEEEecCC
Q 025313 237 MIVVDVAKTT 246 (255)
Q Consensus 237 ~l~V~~a~~~ 246 (255)
+|+|..|..+
T Consensus 165 kIEVn~ATar 174 (376)
T KOG0125|consen 165 KIEVNNATAR 174 (376)
T ss_pred EEEEeccchh
Confidence 9999998765
No 38
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=4.4e-15 Score=112.78 Aligned_cols=162 Identities=16% Similarity=0.237 Sum_probs=114.8
Q ss_pred CcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh-CC
Q 025313 45 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT-GV 123 (255)
Q Consensus 45 ~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~-~~ 123 (255)
.+..++ |||||. ++-+.+|.++|.++ |.|.+|.++. --...+||||+|+++.+|+.|+ .-
T Consensus 5 ~~~~iy-vGNLP~-----------diRekeieDlFyKy-----g~i~~ieLK~--r~g~ppfafVeFEd~RDAeDAiygR 65 (241)
T KOG0105|consen 5 NSRRIY-VGNLPG-----------DIREKEIEDLFYKY-----GRIREIELKN--RPGPPPFAFVEFEDPRDAEDAIYGR 65 (241)
T ss_pred ccceEE-ecCCCc-----------chhhccHHHHHhhh-----cceEEEEecc--CCCCCCeeEEEecCccchhhhhhcc
Confidence 345566 999999 99999999999966 9999999873 2334689999999999995555 33
Q ss_pred CCC------ceecCCCCCCC---CCcCCCCCCCCCCcCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEE
Q 025313 124 PGV------LSVQPDENFGS---ENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELV 194 (255)
Q Consensus 124 ~g~------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~ 194 (255)
+|. +.+..++...+ ....+.+.... --........+.......|.|++||...+|++|+++...-|.|.
T Consensus 66 dGYdydg~rLRVEfprggr~s~~~~G~y~gggrg--Ggg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvC 143 (241)
T KOG0105|consen 66 DGYDYDGCRLRVEFPRGGRSSSDRRGSYSGGGRG--GGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVC 143 (241)
T ss_pred cccccCcceEEEEeccCCCcccccccccCCCCCC--CCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCee
Confidence 542 22222221110 01111111000 00111112233445577899999999999999999999999999
Q ss_pred EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC
Q 025313 195 EVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIIN 234 (255)
Q Consensus 195 ~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~ 234 (255)
...+.+|- ++.|+|-..++.+-|+..|+...+.
T Consensus 144 fadv~rDg-------~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 144 FADVQRDG-------VGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred eeeeeccc-------ceeeeeeehhhHHHHHHhhcccccc
Confidence 99998874 8999999999999999999887665
No 39
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.68 E-value=1e-16 Score=126.12 Aligned_cols=81 Identities=42% Similarity=0.644 Sum_probs=74.1
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 025313 164 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 243 (255)
Q Consensus 164 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a 243 (255)
..-++|||+||+|.+..+.|+++|++||+|++..++.|+.+|++||||||+|.+.++|.+|++. -+-.|+||+-.+.+|
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLA 88 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchh
Confidence 3467999999999999999999999999999999999999999999999999999999999965 456799999888887
Q ss_pred cC
Q 025313 244 KT 245 (255)
Q Consensus 244 ~~ 245 (255)
.-
T Consensus 89 ~l 90 (247)
T KOG0149|consen 89 SL 90 (247)
T ss_pred hh
Confidence 54
No 40
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=2.5e-16 Score=112.57 Aligned_cols=81 Identities=27% Similarity=0.518 Sum_probs=77.8
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 025313 164 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 243 (255)
Q Consensus 164 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a 243 (255)
..+++|||+||++.++|++|.++|+.+|+|..|.|-.|+.+..+.|||||+|.+.++|+.|++.++|+.+..++|++.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 45889999999999999999999999999999999999989999999999999999999999999999999999999996
Q ss_pred c
Q 025313 244 K 244 (255)
Q Consensus 244 ~ 244 (255)
-
T Consensus 114 ~ 114 (153)
T KOG0121|consen 114 A 114 (153)
T ss_pred c
Confidence 5
No 41
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.66 E-value=8.4e-16 Score=124.81 Aligned_cols=76 Identities=17% Similarity=0.312 Sum_probs=71.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecC
Q 025313 166 TKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKT 245 (255)
Q Consensus 166 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~ 245 (255)
.++|||+|||+.+++++|+++|+.||.|.+|.|+.|.. ++|||||+|.++++|+.|+ .|||..|.|+.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 67899999999999999999999999999999998863 5789999999999999999 6999999999999999873
No 42
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.65 E-value=1.3e-15 Score=131.23 Aligned_cols=173 Identities=16% Similarity=0.155 Sum_probs=122.9
Q ss_pred CCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhC
Q 025313 43 QIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG 122 (255)
Q Consensus 43 ~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~ 122 (255)
...+..++.+..||| +.|+++|.++|..+ .|.++.+ .+.+|+..|-|||+|.++|++++|++
T Consensus 6 e~~~~~~vr~rGLPw-----------sat~~ei~~Ff~~~------~I~~~~~-~r~~Gr~sGeA~Ve~~seedv~~Alk 67 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPW-----------SATEKEILDFFSNC------GIENLEI-PRRNGRPSGEAYVEFTSEEDVEKALK 67 (510)
T ss_pred CCCcceEEEecCCCc-----------cccHHHHHHHHhcC------ceeEEEE-eccCCCcCcceEEEeechHHHHHHHH
Confidence 344455666999999 99999999999976 5666433 35579999999999999999999998
Q ss_pred CCCCcee-cCCCCCCCCCcCCCCCCCCCCcCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEE-EEEEe
Q 025313 123 VPGVLSV-QPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVE-VKIIM 200 (255)
Q Consensus 123 ~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~-v~i~~ 200 (255)
.+-.... +....+....... ........ .........|-+++||+.++++||.+||+..-.|.. +.++.
T Consensus 68 kdR~~mg~RYIEVf~~~~~e~--d~~~~~~g-------~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~ 138 (510)
T KOG4211|consen 68 KDRESMGHRYIEVFTAGGAEA--DWVMRPGG-------PNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPM 138 (510)
T ss_pred hhHHHhCCceEEEEccCCccc--cccccCCC-------CCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeec
Confidence 7643211 1111111111100 00000000 111134678999999999999999999998765555 44555
Q ss_pred cCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 025313 201 DKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 244 (255)
Q Consensus 201 d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~ 244 (255)
|. .|++.|-|||+|++.+.|++||. -|...|+-|-|.|..+.
T Consensus 139 d~-rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 139 DQ-RGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRSS 180 (510)
T ss_pred cC-CCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehhH
Confidence 65 88899999999999999999994 47888998999887764
No 43
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.65 E-value=7e-16 Score=140.14 Aligned_cols=80 Identities=35% Similarity=0.611 Sum_probs=76.7
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 025313 165 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 244 (255)
Q Consensus 165 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~ 244 (255)
..++|||+|||+.+++++|+++|++||.|.+|+|+.|+.+|+++|||||+|.+.++|++|++.|||..++|++|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999998754
No 44
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.64 E-value=7e-15 Score=115.48 Aligned_cols=171 Identities=21% Similarity=0.314 Sum_probs=124.4
Q ss_pred cccCCCCCCccEEEecCCCCCCCCHHHHHH----HHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHH-HHHhC
Q 025313 48 LLFPLGTTKHWLVRMDKPGVGVVTKAQMVD----RYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECA-QELTG 122 (255)
Q Consensus 48 ~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~----~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a-~~a~~ 122 (255)
+++ |.||+. .+..++|+. +|+++ |.|.+|... .+.+.+|-|||.|.+.+.| .+..+
T Consensus 11 TlY-InnLne-----------kI~~~elkrsL~~LFsqf-----G~ildI~a~--kt~KmRGQA~VvFk~~~~As~A~r~ 71 (221)
T KOG4206|consen 11 TLY-INNLNE-----------KIKKDELKRSLYLLFSQF-----GKILDISAF--KTPKMRGQAFVVFKETEAASAALRA 71 (221)
T ss_pred eEe-ehhccc-----------cccHHHHHHHHHHHHHhh-----CCeEEEEec--CCCCccCceEEEecChhHHHHHHHH
Confidence 677 999999 899999998 77754 999988876 7889999999999999888 66667
Q ss_pred CCCCc------eecCCCCCC-----------CCCcCCCCCCCC----------------CCcCCCCCCCCCCCCCccceE
Q 025313 123 VPGVL------SVQPDENFG-----------SENKDYGGNNLQ----------------NSMVPSDSSEASPTQIKTKKL 169 (255)
Q Consensus 123 ~~g~~------~~~~~~~~~-----------~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~l 169 (255)
|+|-. .++..+... .+.+........ ....++.. ......+...|
T Consensus 72 l~gfpFygK~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~--~~~~~ppn~il 149 (221)
T KOG4206|consen 72 LQGFPFYGKPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPF--LAQMAPPNNIL 149 (221)
T ss_pred hcCCcccCchhheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCc--cccCCCCceEE
Confidence 77742 221111100 000000000000 00011111 02234567899
Q ss_pred EEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC-CEEEEEEEec
Q 025313 170 FVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIIN-GWMIVVDVAK 244 (255)
Q Consensus 170 ~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~-g~~l~V~~a~ 244 (255)
|+.|||..++.+.+..+|.+|+.-..++++... .+.|||+|.+...|..|...|+|..+. ...+++.+++
T Consensus 150 f~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 150 FLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred EEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 999999999999999999999999999998764 569999999999999999999999887 7888888765
No 45
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.64 E-value=2.9e-15 Score=135.82 Aligned_cols=80 Identities=29% Similarity=0.451 Sum_probs=74.1
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC-CEEEEEEE
Q 025313 164 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIIN-GWMIVVDV 242 (255)
Q Consensus 164 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~-g~~l~V~~ 242 (255)
...++|||+|||+++++++|+++|++||.|.+++|++| .+|+++|||||+|.+.++|++||+.||+..+. |+.|.|.+
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 34689999999999999999999999999999999999 59999999999999999999999999999985 78887776
Q ss_pred ec
Q 025313 243 AK 244 (255)
Q Consensus 243 a~ 244 (255)
+.
T Consensus 135 S~ 136 (578)
T TIGR01648 135 SV 136 (578)
T ss_pred cc
Confidence 64
No 46
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.63 E-value=1.1e-15 Score=110.27 Aligned_cols=84 Identities=29% Similarity=0.488 Sum_probs=79.8
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 242 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~ 242 (255)
...+..|||.|+....++++|.+.|..||+|+++.|..|+.||-.+|||+|+|++.++|++|+.+|||..|.|+.|.|.|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCC
Q 025313 243 AKTT 246 (255)
Q Consensus 243 a~~~ 246 (255)
+-.+
T Consensus 149 ~Fv~ 152 (170)
T KOG0130|consen 149 CFVK 152 (170)
T ss_pred EEec
Confidence 8643
No 47
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=5.5e-15 Score=119.97 Aligned_cols=83 Identities=42% Similarity=0.688 Sum_probs=79.4
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 025313 164 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 243 (255)
Q Consensus 164 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a 243 (255)
.+-+||||+-|+..++|..|+..|+.||+|+.+.|++|..||+|+|||||+|+.+-+..+|.+.-+|..|+|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cCC
Q 025313 244 KTT 246 (255)
Q Consensus 244 ~~~ 246 (255)
...
T Consensus 179 RgR 181 (335)
T KOG0113|consen 179 RGR 181 (335)
T ss_pred ccc
Confidence 644
No 48
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.62 E-value=5.8e-17 Score=122.56 Aligned_cols=80 Identities=30% Similarity=0.576 Sum_probs=76.6
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 025313 165 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 244 (255)
Q Consensus 165 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~ 244 (255)
.+.-|||+|||+.+||.+|.-+|++||+|++|.|++|+.||+|+||||..|++..+..-|+..|||..|.||.|+|....
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 46779999999999999999999999999999999999999999999999999999999999999999999999998754
No 49
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=2.7e-15 Score=113.02 Aligned_cols=81 Identities=30% Similarity=0.511 Sum_probs=74.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecC
Q 025313 166 TKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKT 245 (255)
Q Consensus 166 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~ 245 (255)
.++|||+||+..+++.||+..|..||++.+|-|... +.|||||+|+++.+|+.|+..|+|..|.|..|+|+++.-
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 788999999999999999999999999999988764 588999999999999999999999999999999999987
Q ss_pred CCCCCC
Q 025313 246 TPKYSR 251 (255)
Q Consensus 246 ~~~~~~ 251 (255)
.++..+
T Consensus 85 ~~r~~r 90 (195)
T KOG0107|consen 85 RPRGSR 90 (195)
T ss_pred Cccccc
Confidence 665433
No 50
>smart00362 RRM_2 RNA recognition motif.
Probab=99.61 E-value=6.4e-15 Score=97.59 Aligned_cols=72 Identities=38% Similarity=0.629 Sum_probs=67.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 025313 168 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 241 (255)
Q Consensus 168 ~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~ 241 (255)
+|||+|||..+++++|+++|++||.|..+.+..+. +.++|+|||+|.+.++|+.|+..++|..+.|++|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999999876 7889999999999999999999999999999999873
No 51
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.61 E-value=1.4e-15 Score=117.43 Aligned_cols=80 Identities=31% Similarity=0.589 Sum_probs=77.4
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 025313 165 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 244 (255)
Q Consensus 165 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~ 244 (255)
....|.|-||-+-++.++|+.+|++||.|-+|.|+.|+-|+.++|||||.|....+|+.|+.+|+|..|+|+.|+|++|+
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999986
No 52
>PLN03213 repressor of silencing 3; Provisional
Probab=99.60 E-value=4.9e-15 Score=127.63 Aligned_cols=78 Identities=19% Similarity=0.351 Sum_probs=72.6
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCH--HHHHHHHHHhCCceeCCEEEEEEE
Q 025313 165 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTE--EAASAALKEMNGKIINGWMIVVDV 242 (255)
Q Consensus 165 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~--~~A~~Al~~l~g~~l~g~~l~V~~ 242 (255)
.+.+|||+||++.+++++|+.+|++||.|.+|.|++. +| ||||||+|.+. .++.+||..|||..+.|+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 4678999999999999999999999999999999944 77 99999999987 789999999999999999999999
Q ss_pred ecCC
Q 025313 243 AKTT 246 (255)
Q Consensus 243 a~~~ 246 (255)
|++.
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 9864
No 53
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=8.8e-16 Score=119.55 Aligned_cols=86 Identities=34% Similarity=0.548 Sum_probs=81.7
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 025313 164 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 243 (255)
Q Consensus 164 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a 243 (255)
...++|||++|...+++.-|...|-+||.|.++.++.|..++++||||||+|...++|.+|+..||+.+|-||.|+|.+|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 025313 244 KTTPKY 249 (255)
Q Consensus 244 ~~~~~~ 249 (255)
+|..-.
T Consensus 88 kP~kik 93 (298)
T KOG0111|consen 88 KPEKIK 93 (298)
T ss_pred CCcccc
Confidence 987533
No 54
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.59 E-value=9.9e-15 Score=116.77 Aligned_cols=76 Identities=21% Similarity=0.194 Sum_probs=70.5
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 025313 165 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 244 (255)
Q Consensus 165 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~ 244 (255)
.+.+|||+||++.+|+++|+++|+.||.|.+|+|++|. ..+|+|||+|+++++|+.|+ .|+|..|.+++|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 36899999999999999999999999999999999884 45689999999999999999 999999999999998854
No 55
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=9.3e-15 Score=124.48 Aligned_cols=84 Identities=31% Similarity=0.490 Sum_probs=79.5
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC-CEEEEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIIN-GWMIVVD 241 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~-g~~l~V~ 241 (255)
...++.|||+.||.++.|++|..+|++.|+|-+++|++|+.+|.+||||||.|.+.++|+.|++.||+++|. |+.|.|.
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 356899999999999999999999999999999999999999999999999999999999999999999986 9999998
Q ss_pred EecCC
Q 025313 242 VAKTT 246 (255)
Q Consensus 242 ~a~~~ 246 (255)
.+...
T Consensus 160 ~Svan 164 (506)
T KOG0117|consen 160 VSVAN 164 (506)
T ss_pred Eeeec
Confidence 88755
No 56
>smart00360 RRM RNA recognition motif.
Probab=99.59 E-value=1.1e-14 Score=96.06 Aligned_cols=71 Identities=38% Similarity=0.641 Sum_probs=67.5
Q ss_pred EcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 025313 171 VTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 241 (255)
Q Consensus 171 V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~ 241 (255)
|+|||..+++++|+++|++||.|..+.+..++.++.++|+|||+|.+.++|..|+..|++..++|++|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999988789999999999999999999999999999999999873
No 57
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=5e-15 Score=117.33 Aligned_cols=163 Identities=24% Similarity=0.321 Sum_probs=115.2
Q ss_pred ccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHH-HHHhCCCCCc
Q 025313 49 LFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECA-QELTGVPGVL 127 (255)
Q Consensus 49 ~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a-~~a~~~~g~~ 127 (255)
++ +|++|+ .+.+.+|.++|..+ |.+.++.++ .||+||+|.+..+| .++..++|..
T Consensus 4 v~-vg~~~~-----------~~~~~d~E~~f~~y-----g~~~d~~mk-------~gf~fv~fed~rda~Dav~~l~~~~ 59 (216)
T KOG0106|consen 4 VY-IGRLPY-----------RARERDVERFFKGY-----GKIPDADMK-------NGFGFVEFEDPRDADDAVHDLDGKE 59 (216)
T ss_pred ee-ecccCC-----------ccchhHHHHHHhhc-----cccccceee-------cccceeccCchhhhhcccchhcCce
Confidence 45 788888 89999999999966 999999998 89999999999999 5555566542
Q ss_pred eecCCCCCCCCCcCC---CCCCCCCCcCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCC
Q 025313 128 SVQPDENFGSENKDY---GGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKIS 204 (255)
Q Consensus 128 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~ 204 (255)
..... ......+.. .+..... ..+.............+.+.|.+++..+.+.+|.++|.++|++....+
T Consensus 60 l~~e~-~vve~~r~~~~~~g~~~~g-~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~------ 131 (216)
T KOG0106|consen 60 LCGER-LVVEHARGKRRGRGRPRGG-DRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA------ 131 (216)
T ss_pred eccee-eeeecccccccccCCCCCC-CccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh------
Confidence 21110 000000000 0000000 000001111222345778999999999999999999999999865554
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecC
Q 025313 205 KRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKT 245 (255)
Q Consensus 205 g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~ 245 (255)
.+++|||+|+..++|.+|+..|+|..+.|++|++.....
T Consensus 132 --~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~~~ 170 (216)
T KOG0106|consen 132 --RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKNSR 170 (216)
T ss_pred --hccccceeehhhhhhhhcchhccchhhcCceeeecccCc
Confidence 255899999999999999999999999999999955543
No 58
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.57 E-value=6.1e-15 Score=129.08 Aligned_cols=82 Identities=29% Similarity=0.585 Sum_probs=79.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCC
Q 025313 167 KKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTT 246 (255)
Q Consensus 167 ~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~~ 246 (255)
..+||+|+|+.+++++|.++|+..|.|.+++++.|+++|+++||||++|.+.++|..|++.|||.+++||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CC
Q 025313 247 PK 248 (255)
Q Consensus 247 ~~ 248 (255)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 54
No 59
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=5.2e-14 Score=126.08 Aligned_cols=182 Identities=19% Similarity=0.298 Sum_probs=122.1
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
.....+.++ ++|+|. .+..++|.+.|. .||.|..|.+. ..| --+.|+|.++.+|++|.
T Consensus 381 ~~rs~~vil-~kNlpa-----------~t~~~elt~~F~-----~fG~i~rvllp--~~G---~~aiv~fl~p~eAr~Af 438 (725)
T KOG0110|consen 381 AERSDTVIL-VKNLPA-----------GTLSEELTEAFL-----RFGEIGRVLLP--PGG---TGAIVEFLNPLEARKAF 438 (725)
T ss_pred hhhhcceee-eccCcc-----------ccccHHHHHHhh-----cccccceeecC--ccc---ceeeeeecCccchHHHH
Confidence 334445566 999999 999999999999 55999888443 222 24899999999997665
Q ss_pred CC-CCC--------ceecCCCCCC--CCCcCCCCCCCCC-------------CcCCCCCC-----CCC--CCCCc-cceE
Q 025313 122 GV-PGV--------LSVQPDENFG--SENKDYGGNNLQN-------------SMVPSDSS-----EAS--PTQIK-TKKL 169 (255)
Q Consensus 122 ~~-~g~--------~~~~~~~~~~--~~~~~~~~~~~~~-------------~~~~~~~~-----~~~--~~~~~-~~~l 169 (255)
.. ... +.+-|...+. .+........... .....+.. ... ..... .++|
T Consensus 439 rklaysr~k~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~l 518 (725)
T KOG0110|consen 439 RKLAYSRFKSAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKL 518 (725)
T ss_pred HHhchhhhccCccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhh
Confidence 43 321 2222222222 0001111100000 00000000 000 01111 2339
Q ss_pred EEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCC---CcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecC
Q 025313 170 FVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISK---RSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKT 245 (255)
Q Consensus 170 ~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g---~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~ 245 (255)
||.||++.++.++|...|...|.|.++.|...+..- .|.|||||+|.+.++|+.|++.|+|+.|.|+.|.|.++..
T Consensus 519 fvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~ 597 (725)
T KOG0110|consen 519 FVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISEN 597 (725)
T ss_pred hhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccC
Confidence 999999999999999999999999999988766221 3569999999999999999999999999999999999983
No 60
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=4.9e-14 Score=97.16 Aligned_cols=82 Identities=20% Similarity=0.340 Sum_probs=73.7
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 025313 162 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 241 (255)
Q Consensus 162 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~ 241 (255)
.+..++-|||+|||+++|.+++.++|.+||.|..++|-..+ ..+|-|||.|++..+|.+|+.+|+|..+.++.|.|-
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 34457889999999999999999999999999999997654 468999999999999999999999999999999998
Q ss_pred EecCC
Q 025313 242 VAKTT 246 (255)
Q Consensus 242 ~a~~~ 246 (255)
+-.+.
T Consensus 91 yyq~~ 95 (124)
T KOG0114|consen 91 YYQPE 95 (124)
T ss_pred ecCHH
Confidence 86654
No 61
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.55 E-value=1e-14 Score=110.51 Aligned_cols=81 Identities=32% Similarity=0.450 Sum_probs=77.9
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 025313 165 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 244 (255)
Q Consensus 165 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~ 244 (255)
...+|||+||+..++++.|.++|-+.|+|.++.+++|+.+..++||||++|.++++|+-|++-||...|.|++|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C
Q 025313 245 T 245 (255)
Q Consensus 245 ~ 245 (255)
.
T Consensus 88 ~ 88 (203)
T KOG0131|consen 88 A 88 (203)
T ss_pred c
Confidence 3
No 62
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.54 E-value=1.1e-13 Score=92.10 Aligned_cols=74 Identities=41% Similarity=0.659 Sum_probs=69.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 025313 168 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 242 (255)
Q Consensus 168 ~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~ 242 (255)
+|+|+|||..+++++|+++|+.||.|..+.+..+.. +.++|+|||+|.+.++|..|+..+++..+.|+++.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~-~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKD-TKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999999999998874 47899999999999999999999999999999999874
No 63
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.52 E-value=8.3e-14 Score=116.26 Aligned_cols=79 Identities=35% Similarity=0.681 Sum_probs=77.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 025313 166 TKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 244 (255)
Q Consensus 166 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~ 244 (255)
..+|||+|||..+++++|.++|.+||.|..+.+..|+.+|.++|+|||+|.+.++|..|+..++|..|.|++|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 6999999999999999999999999999999999998899999999999999999999999999999999999999975
No 64
>smart00361 RRM_1 RNA recognition motif.
Probab=99.50 E-value=1.6e-13 Score=91.32 Aligned_cols=62 Identities=23% Similarity=0.578 Sum_probs=56.4
Q ss_pred HHHHHHHHh----cCCCEEEEE-EEecCCC--CCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 025313 180 EKTLRAAFE----GFGELVEVK-IIMDKIS--KRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 241 (255)
Q Consensus 180 ~~~L~~~F~----~fG~i~~v~-i~~d~~~--g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~ 241 (255)
+++|+++|+ .||.|.++. +..++.+ |.++|+|||+|.+.++|.+|+..|||..+.|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578899998 999999995 7777766 9999999999999999999999999999999999863
No 65
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.49 E-value=5e-13 Score=113.79 Aligned_cols=192 Identities=18% Similarity=0.220 Sum_probs=135.3
Q ss_pred CCCCCCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHH
Q 025313 38 NPWNSQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECA 117 (255)
Q Consensus 38 ~~~~~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a 117 (255)
...++...-+.+| +.|+|+ ++..++|+++|. ++.|.|..|.+..+..|++||+|.|+|.++|.+
T Consensus 36 ~~gn~~~r~R~vf-ItNIpy-----------d~rWqdLKdLvr----ekvGev~yveLl~D~~GK~rGcavVEFk~~E~~ 99 (608)
T KOG4212|consen 36 QGGNVAARDRSVF-ITNIPY-----------DYRWQDLKDLVR----EKVGEVEYVELLFDESGKARGCAVVEFKDPENV 99 (608)
T ss_pred CCCCcccccceEE-EecCcc-----------hhhhHhHHHHHH----HhcCceEeeeeecccCCCcCCceEEEeeCHHHH
Confidence 3334455555677 899999 999999999998 455999999999999999999999999999999
Q ss_pred HHHhCC-C-----CCc-eecCCCC----------------CCCCC----------cCCCCC-CCCCCcCCCCCC------
Q 025313 118 QELTGV-P-----GVL-SVQPDEN----------------FGSEN----------KDYGGN-NLQNSMVPSDSS------ 157 (255)
Q Consensus 118 ~~a~~~-~-----g~~-~~~~~~~----------------~~~~~----------~~~~~~-~~~~~~~~~~~~------ 157 (255)
++|++. | |-. .++..+. +.... ....+. .......+.+..
T Consensus 100 qKa~E~lnk~~~~GR~l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~ 179 (608)
T KOG4212|consen 100 QKALEKLNKYEVNGRELVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRN 179 (608)
T ss_pred HHHHHHhhhccccCceEEEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCccccccccccc
Confidence 877653 2 221 1111111 00000 000000 000000000000
Q ss_pred --------------------------CC-CCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceE
Q 025313 158 --------------------------EA-SPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGY 210 (255)
Q Consensus 158 --------------------------~~-~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~ 210 (255)
.. ...++...++||.||.+.+....|++.|.-.|.|+.+.+-.|+ .|.++|+
T Consensus 180 ~t~t~~~~~~~~~~~~lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idK-eG~s~G~ 258 (608)
T KOG4212|consen 180 NTNTMSNDYNNSSNYNLFGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDK-EGNSRGF 258 (608)
T ss_pred CccccccccccchhhhcccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeecc-ccccCCe
Confidence 00 0123345689999999999999999999999999999999998 6799999
Q ss_pred EEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCC
Q 025313 211 AFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTT 246 (255)
Q Consensus 211 aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~~ 246 (255)
|.++|..+-+|-.|+..|++.-+..++..+.+..-.
T Consensus 259 ~vi~y~hpveavqaIsml~~~g~~~~~~~~Rl~~~~ 294 (608)
T KOG4212|consen 259 AVIEYDHPVEAVQAISMLDRQGLFDRRMTVRLDRIP 294 (608)
T ss_pred eEEEecchHHHHHHHHhhccCCCccccceeeccccc
Confidence 999999999999999999987777888777775533
No 66
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.47 E-value=3.8e-13 Score=85.43 Aligned_cols=56 Identities=38% Similarity=0.690 Sum_probs=51.1
Q ss_pred HHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 025313 183 LRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 243 (255)
Q Consensus 183 L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a 243 (255)
|.++|++||.|..+.+..+. +++|||+|.+.++|.+|++.|||..++|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997653 579999999999999999999999999999999986
No 67
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.45 E-value=4.3e-13 Score=117.22 Aligned_cols=173 Identities=17% Similarity=0.280 Sum_probs=116.5
Q ss_pred ccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEee-cCCccceEEeeeCCHHHHHHH-hCCCCC
Q 025313 49 LFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYH-VSWQSNFGFCCELDDECAQEL-TGVPGV 126 (255)
Q Consensus 49 ~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~-~~~~~g~aFV~f~~~e~a~~a-~~~~g~ 126 (255)
|+ ||||-+ ++|+++|...|+ .||+|..|.+.++. +|+++|||||+|.+.++|++| ..|||.
T Consensus 281 l~-vgnLHf-----------Nite~~lr~ife-----pfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngf 343 (549)
T KOG0147|consen 281 LY-VGNLHF-----------NITEDMLRGIFE-----PFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGF 343 (549)
T ss_pred hh-hccccc-----------CchHHHHhhhcc-----CcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccc
Confidence 56 999999 999999999999 77999999988876 999999999999999999777 667872
Q ss_pred cee--cCCCC-------CCCC------------CcCC----C-------------CCCCCCCc----------------C
Q 025313 127 LSV--QPDEN-------FGSE------------NKDY----G-------------GNNLQNSM----------------V 152 (255)
Q Consensus 127 ~~~--~~~~~-------~~~~------------~~~~----~-------------~~~~~~~~----------------~ 152 (255)
.+ +..+. .... ...+ . +..+...+ .
T Consensus 344 -elAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~ 422 (549)
T KOG0147|consen 344 -ELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFN 422 (549)
T ss_pred -eecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhc
Confidence 11 11000 0000 0000 0 00000000 0
Q ss_pred CCCCCCCCCCC-------CccceEEEcCCCC--CCC--------HHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEe
Q 025313 153 PSDSSEASPTQ-------IKTKKLFVTGLSF--YTS--------EKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEY 215 (255)
Q Consensus 153 ~~~~~~~~~~~-------~~~~~l~V~nLp~--~~t--------~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F 215 (255)
.........+. .++..+.++|+=. ..| .+++.+-+++||.|..|.+-.. +.|+-||.|
T Consensus 423 ~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n-----s~g~VYvrc 497 (549)
T KOG0147|consen 423 GVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN-----SAGCVYVRC 497 (549)
T ss_pred CCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC-----CCceEEEec
Confidence 00000001111 3455666676622 222 2567777799999998877433 458999999
Q ss_pred CCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 025313 216 TTEEAASAALKEMNGKIINGWMIVVDVAK 244 (255)
Q Consensus 216 ~~~~~A~~Al~~l~g~~l~g~~l~V~~a~ 244 (255)
.+.+.|..|+.+|||..|.|+.|.+.|-.
T Consensus 498 ~s~~~A~~a~~alhgrWF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 498 PSAEAAGTAVKALHGRWFAGRMITAKYLP 526 (549)
T ss_pred CcHHHHHHHHHHHhhhhhccceeEEEEee
Confidence 99999999999999999999999999865
No 68
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.42 E-value=7.9e-13 Score=112.57 Aligned_cols=82 Identities=23% Similarity=0.445 Sum_probs=76.1
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHh-cCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 025313 165 KTKKLFVTGLSFYTSEKTLRAAFE-GFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 243 (255)
Q Consensus 165 ~~~~l~V~nLp~~~t~~~L~~~F~-~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a 243 (255)
..+.+||+|||+++.|++|+++|. +.|+|+.|.|+.|. +|++||+|.|+|+++|.+++|++.||.+.+.||+|.|...
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 356699999999999999999996 78999999999998 8999999999999999999999999999999999999987
Q ss_pred cCCC
Q 025313 244 KTTP 247 (255)
Q Consensus 244 ~~~~ 247 (255)
...+
T Consensus 122 ~d~q 125 (608)
T KOG4212|consen 122 HDEQ 125 (608)
T ss_pred Cchh
Confidence 6543
No 69
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=6.8e-13 Score=100.97 Aligned_cols=79 Identities=19% Similarity=0.364 Sum_probs=71.0
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 025313 165 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 244 (255)
Q Consensus 165 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~ 244 (255)
..++|||+|||..+.+.+|+++|-+||.|..|.|...+ .+-.||||+|+++.+|+.|+..-+|..++|.+|+|+++.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 47889999999999999999999999999999875432 345699999999999999999999999999999999987
Q ss_pred CC
Q 025313 245 TT 246 (255)
Q Consensus 245 ~~ 246 (255)
.-
T Consensus 82 gg 83 (241)
T KOG0105|consen 82 GG 83 (241)
T ss_pred CC
Confidence 54
No 70
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=5e-13 Score=111.03 Aligned_cols=88 Identities=28% Similarity=0.465 Sum_probs=82.5
Q ss_pred CCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEE
Q 025313 160 SPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIV 239 (255)
Q Consensus 160 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~ 239 (255)
....++...|||.-|.+-+++++|.-+|+.||.|.+|.+++|..||.+-.||||+|++.+++++|.-.|++..|..++|.
T Consensus 233 Ad~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIH 312 (479)
T KOG0415|consen 233 ADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIH 312 (479)
T ss_pred cccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEE
Confidence 33456788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCC
Q 025313 240 VDVAKTTP 247 (255)
Q Consensus 240 V~~a~~~~ 247 (255)
|.++.+..
T Consensus 313 VDFSQSVs 320 (479)
T KOG0415|consen 313 VDFSQSVS 320 (479)
T ss_pred eehhhhhh
Confidence 99998754
No 71
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.37 E-value=2.7e-12 Score=99.45 Aligned_cols=84 Identities=25% Similarity=0.381 Sum_probs=77.7
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcC-CCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGF-GELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 241 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~f-G~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~ 241 (255)
.....-+|+..+|..+.+.++..+|.+| |.+..+++.+.+.||.|+|||||+|++.+.|+-|-+.||++.+.|+.|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3445679999999999999999999998 778889999999999999999999999999999999999999999999999
Q ss_pred EecCC
Q 025313 242 VAKTT 246 (255)
Q Consensus 242 ~a~~~ 246 (255)
+-.+.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 98776
No 72
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.37 E-value=1.2e-12 Score=106.09 Aligned_cols=73 Identities=30% Similarity=0.584 Sum_probs=69.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCC
Q 025313 167 KKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTT 246 (255)
Q Consensus 167 ~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~~ 246 (255)
.+|||+|||..+++.+|+.+|++||.|++|.|++. ||||..++...|+.|++.|||.+|+|..|.|+-++++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 57999999999999999999999999999999966 9999999999999999999999999999999999877
Q ss_pred C
Q 025313 247 P 247 (255)
Q Consensus 247 ~ 247 (255)
.
T Consensus 75 s 75 (346)
T KOG0109|consen 75 S 75 (346)
T ss_pred C
Confidence 3
No 73
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=1.1e-11 Score=109.45 Aligned_cols=183 Identities=17% Similarity=0.222 Sum_probs=121.4
Q ss_pred cccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEE-eecCCccceEEeeeCCHHHH-HHHhCC
Q 025313 46 TTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDECA-QELTGV 123 (255)
Q Consensus 46 s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~-~~~~~~~g~aFV~f~~~e~a-~~a~~~ 123 (255)
...+| +++||. .+++.++.|+.. .||.++.-++.. ..+|.++||||.+|.++-.. ++...+
T Consensus 289 ~~ki~-v~~lp~-----------~l~~~q~~Ell~-----~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agL 351 (500)
T KOG0120|consen 289 PNKIF-VGGLPL-----------YLTEDQVKELLD-----SFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGL 351 (500)
T ss_pred cchhh-hccCcC-----------ccCHHHHHHHHH-----hcccchhheeecccccccccceeeeeeeCCcchhhhhccc
Confidence 33455 899999 899999999998 679999999776 45689999999999999999 566667
Q ss_pred CCCceecCCCCC----CCCCcCCCCCCC-CCCcCCCCCCCCCCCCCccceEEEcCCC--CCC-CHH-------HHHHHHh
Q 025313 124 PGVLSVQPDENF----GSENKDYGGNNL-QNSMVPSDSSEASPTQIKTKKLFVTGLS--FYT-SEK-------TLRAAFE 188 (255)
Q Consensus 124 ~g~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~V~nLp--~~~-t~~-------~L~~~F~ 188 (255)
||+......... ............ ............+....++..|.+.|+= ..+ +++ +++.-++
T Consensus 352 nGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~ 431 (500)
T KOG0120|consen 352 NGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECA 431 (500)
T ss_pred chhhhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhc
Confidence 887543111110 000011111100 0011111111113334456666666652 111 333 3445567
Q ss_pred cCCCEEEEEEEecCCC---CCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecC
Q 025313 189 GFGELVEVKIIMDKIS---KRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKT 245 (255)
Q Consensus 189 ~fG~i~~v~i~~d~~~---g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~ 245 (255)
+||.|.+|.+.++-.. ....|--||+|.+.+++++|.++|+|.++.||.|...|-..
T Consensus 432 k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 432 KFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred ccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 8999999999988222 23566779999999999999999999999999999988654
No 74
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=4.4e-12 Score=111.99 Aligned_cols=185 Identities=20% Similarity=0.298 Sum_probs=132.9
Q ss_pred CCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCcccc--ceEEeecCCccceEEeeeCCHHHHHHHhCCCCCc-e
Q 025313 52 LGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDA--QMCIYHVSWQSNFGFCCELDDECAQELTGVPGVL-S 128 (255)
Q Consensus 52 ~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v--~i~~~~~~~~~g~aFV~f~~~e~a~~a~~~~g~~-~ 128 (255)
+++++. .++++....+|.+.+...-+..... .++.......+.|||++|.+.+.|..++.++++. .
T Consensus 180 v~~~~~-----------~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~nfa~ie~~s~~~at~~~~~~~~~f~ 248 (500)
T KOG0120|consen 180 VGNIPF-----------TSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEKNFAFIEFRSISEATEAMALDGIIFE 248 (500)
T ss_pred ccccCC-----------ccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccccceeEEecCCCchhhhhcccchhhC
Confidence 677777 7999999999998754333333332 1333456677899999999999998888888742 2
Q ss_pred ecCCCCCCCCCc-CCCCCCCCCC-c-CCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCC
Q 025313 129 VQPDENFGSENK-DYGGNNLQNS-M-VPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISK 205 (255)
Q Consensus 129 ~~~~~~~~~~~~-~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g 205 (255)
.++.+....... ...+...... . .-..............++||+|||..+++.+++++...||.+...++..|..+|
T Consensus 249 g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g 328 (500)
T KOG0120|consen 249 GRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATG 328 (500)
T ss_pred CCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccc
Confidence 222222211100 0011101000 0 001111112333457789999999999999999999999999999999999999
Q ss_pred CcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCCC
Q 025313 206 RSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTP 247 (255)
Q Consensus 206 ~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~~~ 247 (255)
.++||||.+|.++.....|+..|||..+++++|.|+.|-...
T Consensus 329 ~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~ 370 (500)
T KOG0120|consen 329 NSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGA 370 (500)
T ss_pred cccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccc
Confidence 999999999999999999999999999999999999987543
No 75
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.35 E-value=3.8e-12 Score=106.83 Aligned_cols=187 Identities=17% Similarity=0.161 Sum_probs=126.0
Q ss_pred cccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhCCCC
Q 025313 46 TTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGVPG 125 (255)
Q Consensus 46 s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~~~g 125 (255)
...+...++||+ +.|+.++.++|.+-- -+-|-..+|-.+.+.+|+..|-|||.|..+++|+.|+..+.
T Consensus 160 ~qvivRmRGLPf-----------dat~~dVv~FF~~~c-pv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khr 227 (508)
T KOG1365|consen 160 NQVIVRMRGLPF-----------DATALDVVEFFGPPC-PVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHR 227 (508)
T ss_pred cceEEEecCCCC-----------CcchHHHHHhcCCCC-cccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHH
Confidence 355666899999 999999999995310 01144556666678899999999999999999988876442
Q ss_pred Ccee-cCCCCCCCC--------CcCC---CCCCCCCCcCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHhcCCC-
Q 025313 126 VLSV-QPDENFGSE--------NKDY---GGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGE- 192 (255)
Q Consensus 126 ~~~~-~~~~~~~~~--------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~- 192 (255)
.... +....+.+. ++.. .+........+.......+.......|.++|||+..+.++|-+||..|-.
T Consensus 228 q~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~ 307 (508)
T KOG1365|consen 228 QNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATD 307 (508)
T ss_pred HHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhh
Confidence 1100 000000000 0000 00000111111111122223334678999999999999999999999854
Q ss_pred EEE--EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecC
Q 025313 193 LVE--VKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKT 245 (255)
Q Consensus 193 i~~--v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~ 245 (255)
|.. |-+..+. .|++.|-|||+|.+.++|..|.+..+++...+|.|.|-.+..
T Consensus 308 i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~ 361 (508)
T KOG1365|consen 308 IRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSV 361 (508)
T ss_pred cccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccH
Confidence 333 6666665 899999999999999999999999998888899999987754
No 76
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=9.8e-13 Score=109.73 Aligned_cols=77 Identities=36% Similarity=0.642 Sum_probs=74.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 025313 166 TKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 242 (255)
Q Consensus 166 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~ 242 (255)
-+++||+.|.+.+.|+.|+..|..||+|+++.+.-|+.||+++|||||+|+-++.|+-|++.|||..++||.|+|..
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999984
No 77
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.32 E-value=6.9e-12 Score=98.74 Aligned_cols=79 Identities=25% Similarity=0.468 Sum_probs=72.8
Q ss_pred cceEEEcCCCCCCCHHHHHH----HHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 025313 166 TKKLFVTGLSFYTSEKTLRA----AFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 241 (255)
Q Consensus 166 ~~~l~V~nLp~~~t~~~L~~----~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~ 241 (255)
..||||.||+..+..++|+. +|++||.|.+|.... +.+.||-|||.|.+.+.|..|+.+|+|..+.|+++++.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 44999999999999998887 999999999997764 66899999999999999999999999999999999999
Q ss_pred EecCCC
Q 025313 242 VAKTTP 247 (255)
Q Consensus 242 ~a~~~~ 247 (255)
||++..
T Consensus 86 yA~s~s 91 (221)
T KOG4206|consen 86 YAKSDS 91 (221)
T ss_pred cccCcc
Confidence 998764
No 78
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.31 E-value=5.6e-11 Score=93.20 Aligned_cols=65 Identities=20% Similarity=0.372 Sum_probs=55.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC
Q 025313 166 TKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIIN 234 (255)
Q Consensus 166 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~ 234 (255)
..+|||.||..+++|++|+.+|+.|......+|... .|.+ .||++|++.+.|..|+..|+|..|.
T Consensus 210 cstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g~~--vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 210 CSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GGMP--VAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CCcc--eEeecHHHHHHHHHHHHHhhcceec
Confidence 358999999999999999999999988777776533 5544 8999999999999999999997663
No 79
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.29 E-value=5.3e-12 Score=105.85 Aligned_cols=179 Identities=16% Similarity=0.210 Sum_probs=133.5
Q ss_pred cccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEE-eecCCccceEEeeeCCHHHHHHHhCCC
Q 025313 46 TTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDECAQELTGVP 124 (255)
Q Consensus 46 s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~-~~~~~~~g~aFV~f~~~e~a~~a~~~~ 124 (255)
..++| +|++.. .+.+.+...++..+ |...+..+.. .....++|++.+.|...+.+.+++++.
T Consensus 88 ~~~~f-~g~~s~-----------~~e~~~~~~~~~~~-----g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s 150 (285)
T KOG4210|consen 88 SSTFF-VGELSE-----------NIEESEDDNFSSEA-----GLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEES 150 (285)
T ss_pred ccccc-cccccc-----------chhhccccccchhh-----cCcccchhhhhccccccccceeeccccHHHHHHHHHhh
Confidence 44555 999999 78888788888866 8888888665 667889999999999999999998876
Q ss_pred CCceecCCCCCCCCCcCCCCCCCCCCcCCCCCCCCCCCCCccceEE-EcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCC
Q 025313 125 GVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLF-VTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKI 203 (255)
Q Consensus 125 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~ 203 (255)
+.......... ........ ................++| |+|++..+++++|+.+|..+|.|..+++..++.
T Consensus 151 ~~~~~~~~~~~----~dl~~~~~----~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~ 222 (285)
T KOG4210|consen 151 GSKVLDGNKGE----KDLNTRRG----LRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEE 222 (285)
T ss_pred hcccccccccc----Cccccccc----ccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCC
Confidence 63211000000 00000000 0011111111222345566 999999999999999999999999999999999
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCCCCCC
Q 025313 204 SKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPKYS 250 (255)
Q Consensus 204 ~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~~~~~~ 250 (255)
+|.++|+|||.|.+...+..++.. +...+.++++.+....+.+...
T Consensus 223 s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 268 (285)
T KOG4210|consen 223 SGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPRPKSD 268 (285)
T ss_pred ccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCCcccc
Confidence 999999999999999999999977 8899999999999998876443
No 80
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.28 E-value=6.7e-12 Score=95.23 Aligned_cols=65 Identities=25% Similarity=0.366 Sum_probs=55.9
Q ss_pred CcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEE-eecCCccceEEeeeCCHHHHHHHhC-
Q 025313 45 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDECAQELTG- 122 (255)
Q Consensus 45 ~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~-~~~~~~~g~aFV~f~~~e~a~~a~~- 122 (255)
.++.|| |+||++ ++|+++|+++|.++ |.|.+++++. ..+++++|||||+|.++++|++|++
T Consensus 33 ~~~~lf-VgnL~~-----------~~te~~L~~~F~~~-----G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~ 95 (144)
T PLN03134 33 MSTKLF-IGGLSW-----------GTDDASLRDAFAHF-----GDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95 (144)
T ss_pred CCCEEE-EeCCCC-----------CCCHHHHHHHHhcC-----CCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 345577 999999 99999999999955 9999999887 4578999999999999999988774
Q ss_pred CCCC
Q 025313 123 VPGV 126 (255)
Q Consensus 123 ~~g~ 126 (255)
|+|.
T Consensus 96 lng~ 99 (144)
T PLN03134 96 MDGK 99 (144)
T ss_pred cCCC
Confidence 6764
No 81
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.26 E-value=2.7e-10 Score=94.74 Aligned_cols=186 Identities=12% Similarity=0.199 Sum_probs=122.6
Q ss_pred CCCCCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCc-cccc-------eEEeecCCccceEEee
Q 025313 39 PWNSQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNE-KDAQ-------MCIYHVSWQSNFGFCC 110 (255)
Q Consensus 39 ~~~~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v-~~v~-------i~~~~~~~~~g~aFV~ 110 (255)
|.++.+...+.+.|.|||. ++|-+++.++|.++ |-| .+++ +-+...|..+|=|.|+
T Consensus 126 ~~~~~~~~Nt~VYVsgLP~-----------DiT~dE~~~~~sKc-----GiI~~d~~t~epk~KlYrd~~G~lKGDaLc~ 189 (382)
T KOG1548|consen 126 WFNPEPKVNTSVYVSGLPL-----------DITVDEFAEVMSKC-----GIIMRDPQTGEPKVKLYRDNQGKLKGDALCC 189 (382)
T ss_pred ccCcccccCceEEecCCCC-----------cccHHHHHHHHHhc-----ceEeccCCCCCeeEEEEecCCCCccCceEEE
Confidence 4444444444333889988 99999999999976 877 3323 3346678999999999
Q ss_pred eCCHHHHHHHhCC-CCC------ceecCCCCCCCCCcCCCCCC----CC-----C------CcCCCCCCCCCCCCCccce
Q 025313 111 ELDDECAQELTGV-PGV------LSVQPDENFGSENKDYGGNN----LQ-----N------SMVPSDSSEASPTQIKTKK 168 (255)
Q Consensus 111 f~~~e~a~~a~~~-~g~------~~~~~~~~~~~~~~~~~~~~----~~-----~------~~~~~~~~~~~~~~~~~~~ 168 (255)
|.-.+++.-|+++ ++. +.+...+..........+.. .. . .+.+.. .........++
T Consensus 190 y~K~ESVeLA~~ilDe~~~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~--~~~sk~r~~~t 267 (382)
T KOG1548|consen 190 YIKRESVELAIKILDEDELRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDR--DDPSKARADRT 267 (382)
T ss_pred eecccHHHHHHHHhCcccccCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCc--cccccccCCcE
Confidence 9999999777665 332 22222211111111111110 00 0 011111 11233455788
Q ss_pred EEEcCCCC----CCC-------HHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEE
Q 025313 169 LFVTGLSF----YTS-------EKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWM 237 (255)
Q Consensus 169 l~V~nLp~----~~t-------~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~ 237 (255)
|.++|+=- ..+ .++|.+-..+||.|.+|.+.- ..+.|.+-|.|.+.++|..|++.|+|..++||.
T Consensus 268 Vi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRq 343 (382)
T KOG1548|consen 268 VILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQ 343 (382)
T ss_pred EEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCeeecceE
Confidence 99999832 223 355667789999999997763 357899999999999999999999999999999
Q ss_pred EEEEEecCC
Q 025313 238 IVVDVAKTT 246 (255)
Q Consensus 238 l~V~~a~~~ 246 (255)
|..+....+
T Consensus 344 l~A~i~DG~ 352 (382)
T KOG1548|consen 344 LTASIWDGK 352 (382)
T ss_pred EEEEEeCCc
Confidence 998886544
No 82
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=6.6e-12 Score=100.82 Aligned_cols=82 Identities=32% Similarity=0.524 Sum_probs=74.8
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce-eCC--EEEEEE
Q 025313 165 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKI-ING--WMIVVD 241 (255)
Q Consensus 165 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~-l~g--~~l~V~ 241 (255)
..++|||+-|.+.-+|+|++.+|..||.|.+|.+++.. .|.+||+|||.|.+..+|..||..|||.. +-| ..|.|.
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 57899999999999999999999999999999999988 89999999999999999999999999965 434 679999
Q ss_pred EecCCC
Q 025313 242 VAKTTP 247 (255)
Q Consensus 242 ~a~~~~ 247 (255)
+++...
T Consensus 97 ~ADTdk 102 (371)
T KOG0146|consen 97 FADTDK 102 (371)
T ss_pred eccchH
Confidence 998654
No 83
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.26 E-value=3.2e-11 Score=100.56 Aligned_cols=165 Identities=19% Similarity=0.210 Sum_probs=107.4
Q ss_pred cccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHHHHhCC-
Q 025313 46 TTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELTGV- 123 (255)
Q Consensus 46 s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a~~~- 123 (255)
..++| |||||. ++|+++|.++|.++ |.|..+++..+ .++.++|||||+|.++++|..|+..
T Consensus 115 ~~~l~-v~nL~~-----------~~~~~~l~~~F~~~-----g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~ 177 (306)
T COG0724 115 NNTLF-VGNLPY-----------DVTEEDLRELFKKF-----GPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEEL 177 (306)
T ss_pred CceEE-EeCCCC-----------CCCHHHHHHHHHhc-----CceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHc
Confidence 46677 999999 99999999999966 99999999886 5899999999999999999666654
Q ss_pred CCCce-ecCCCCCCCC--CcCCCCCC--CCCCcCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEE
Q 025313 124 PGVLS-VQPDENFGSE--NKDYGGNN--LQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKI 198 (255)
Q Consensus 124 ~g~~~-~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i 198 (255)
+|... .++....... ........ ......................+++.+++..++..++...|..+|.+....+
T Consensus 178 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (306)
T COG0724 178 NGKELEGRPLRVQKAQPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASL 257 (306)
T ss_pred CCCeECCceeEeeccccccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeec
Confidence 54321 1111111110 00000000 0000000011112333445788999999999999999999999999977777
Q ss_pred EecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 025313 199 IMDKISKRSKGYAFIEYTTEEAASAALKE 227 (255)
Q Consensus 199 ~~d~~~g~~rg~aFV~F~~~~~A~~Al~~ 227 (255)
.............++.+.....+......
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (306)
T COG0724 258 PPSKDGKIPKSRSFVGNEASKDALESNSR 286 (306)
T ss_pred cCCCCCcccccccccchhHHHhhhhhhcc
Confidence 66654444555555555555554444433
No 84
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.21 E-value=8.4e-11 Score=97.74 Aligned_cols=80 Identities=31% Similarity=0.556 Sum_probs=71.4
Q ss_pred CCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh-CCceeCCEEE
Q 025313 160 SPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEM-NGKIINGWMI 238 (255)
Q Consensus 160 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l-~g~~l~g~~l 238 (255)
++++..-.+|||+||-..+++.+|+++|-+||+|+++.+... +|+|||+|.+.++|+.|...+ +...|+|++|
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl 295 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRL 295 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEE
Confidence 455666789999999889999999999999999999998865 469999999999999998866 6577899999
Q ss_pred EEEEecC
Q 025313 239 VVDVAKT 245 (255)
Q Consensus 239 ~V~~a~~ 245 (255)
.|.|+.+
T Consensus 296 ~i~Wg~~ 302 (377)
T KOG0153|consen 296 KIKWGRP 302 (377)
T ss_pred EEEeCCC
Confidence 9999988
No 85
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.20 E-value=2.6e-11 Score=95.91 Aligned_cols=70 Identities=17% Similarity=0.217 Sum_probs=57.2
Q ss_pred CCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEE-eecCCccceEEeeeCCHHHHHHHh
Q 025313 43 QIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 43 ~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~-~~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
+..-+.+| ||+|+| +++.++|+++|++. |.|.++.++. +.+|++||||||+|.|.++|..|.
T Consensus 9 DT~~TKif-VggL~w-----------~T~~~~l~~yFeqf-----GeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc 71 (247)
T KOG0149|consen 9 DTTFTKIF-VGGLAW-----------ETHKETLRRYFEQF-----GEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRAC 71 (247)
T ss_pred CceEEEEE-EcCccc-----------ccchHHHHHHHHHh-----CceEEEEEEeccCCccccceeeEEeecHHHHHHHh
Confidence 34556788 999999 99999999999955 9999988665 778999999999999999996655
Q ss_pred C-CCCCcee
Q 025313 122 G-VPGVLSV 129 (255)
Q Consensus 122 ~-~~g~~~~ 129 (255)
+ .|-++..
T Consensus 72 ~dp~piIdG 80 (247)
T KOG0149|consen 72 KDPNPIIDG 80 (247)
T ss_pred cCCCCcccc
Confidence 4 3434433
No 86
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.20 E-value=2e-11 Score=102.79 Aligned_cols=85 Identities=29% Similarity=0.542 Sum_probs=77.6
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 025313 165 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 244 (255)
Q Consensus 165 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~ 244 (255)
...+|||++|+|.++++.|+++|.+||+|.+|.+++|+.+++++||+||+|++++....++ ...-+.|.|+.|.+..|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl-~~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVL-NARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheee-cccccccCCccccceecc
Confidence 4788999999999999999999999999999999999999999999999999999988888 556788999999999998
Q ss_pred CCCCCC
Q 025313 245 TTPKYS 250 (255)
Q Consensus 245 ~~~~~~ 250 (255)
++..+.
T Consensus 84 ~r~~~~ 89 (311)
T KOG4205|consen 84 SREDQT 89 (311)
T ss_pred Cccccc
Confidence 875443
No 87
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=1.9e-12 Score=118.34 Aligned_cols=150 Identities=15% Similarity=0.190 Sum_probs=126.5
Q ss_pred CCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEE-eecCCccceEEeeeCCHHHHHHHhC
Q 025313 44 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDECAQELTG 122 (255)
Q Consensus 44 ~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~-~~~~~~~g~aFV~f~~~e~a~~a~~ 122 (255)
....+.| +.||+. ...+++|...|... |.+..+++.. ...++.+|+|+|+|..++.+.+|+.
T Consensus 665 R~~~~~f-vsnl~~-----------~~~~~dl~~~~~~~-----~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~ 727 (881)
T KOG0128|consen 665 RDLIKIF-VSNLSP-----------KMSEEDLSERFSPS-----GTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVA 727 (881)
T ss_pred HHHHHHH-Hhhcch-----------hhcCchhhhhcCcc-----chhhhHHHHHHhhccccccceeeEeecCCchhhhhh
Confidence 4445677 899999 89999999999944 8888888664 5678899999999999999999887
Q ss_pred CCCCceecCCCCCCCCCcCCCCCCCCCCcCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecC
Q 025313 123 VPGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDK 202 (255)
Q Consensus 123 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~ 202 (255)
+.... .. ....++|+|.|+..|.++++.++..+|.+.+.+++..+
T Consensus 728 f~d~~--------------~~---------------------gK~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r 772 (881)
T KOG0128|consen 728 FRDSC--------------FF---------------------GKISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR 772 (881)
T ss_pred hhhhh--------------hh---------------------hhhhhheeCCCCCCchHHHHhhccccCCccccchhhhh
Confidence 64211 11 14569999999999999999999999999999988877
Q ss_pred CCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCC
Q 025313 203 ISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTT 246 (255)
Q Consensus 203 ~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~~ 246 (255)
.|+++|.|+|.|.+..++.++....++..+.-+.+.|..+.+.
T Consensus 773 -~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~ 815 (881)
T KOG0128|consen 773 -AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNPE 815 (881)
T ss_pred -ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCCc
Confidence 8999999999999999999999888888888888888876553
No 88
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.17 E-value=1.9e-09 Score=91.50 Aligned_cols=164 Identities=18% Similarity=0.191 Sum_probs=113.2
Q ss_pred CCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhC-CCCCcee-cCCCCCCCC--------
Q 025313 69 VVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG-VPGVLSV-QPDENFGSE-------- 138 (255)
Q Consensus 69 ~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~-~~g~~~~-~~~~~~~~~-------- 138 (255)
.||.+.|.-+|. .||.|..|+|.... +--|.|+|.|...|+-|+. ++|.... ++.+...++
T Consensus 309 ~VT~d~LftlFg-----vYGdVqRVkil~nk----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~ 379 (492)
T KOG1190|consen 309 AVTPDVLFTLFG-----VYGDVQRVKILYNK----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPR 379 (492)
T ss_pred ccchhHHHHHHh-----hhcceEEEEeeecC----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCC
Confidence 899999999999 66999999987431 2589999999999966554 4554221 111111000
Q ss_pred --------CcCCCCCCCCCCcCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceE
Q 025313 139 --------NKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGY 210 (255)
Q Consensus 139 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~ 210 (255)
.+++....+... .++..+.....-++..+|.+.|+|..++|++|+..|..-|........ -++.+-+
T Consensus 380 egq~d~glT~dy~~spLhrf-kkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkf----f~kd~km 454 (492)
T KOG1190|consen 380 EGQEDQGLTKDYGNSPLHRF-KKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKF----FQKDRKM 454 (492)
T ss_pred CCCccccccccCCCCchhhc-cCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeee----cCCCcce
Confidence 111111111111 122223333344668899999999999999999999988765444322 2334569
Q ss_pred EEEEeCCHHHHHHHHHHhCCceeCC-EEEEEEEecCC
Q 025313 211 AFIEYTTEEAASAALKEMNGKIING-WMIVVDVAKTT 246 (255)
Q Consensus 211 aFV~F~~~~~A~~Al~~l~g~~l~g-~~l~V~~a~~~ 246 (255)
|++.+++.++|..|+..++++.+++ ..|+|+++++.
T Consensus 455 al~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks~ 491 (492)
T KOG1190|consen 455 ALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKST 491 (492)
T ss_pred eecccCChhHhhhhccccccccCCCCceEEEEeeccc
Confidence 9999999999999999999999985 59999999863
No 89
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.17 E-value=1.6e-11 Score=81.22 Aligned_cols=59 Identities=17% Similarity=0.220 Sum_probs=52.4
Q ss_pred CCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhC-CCCC
Q 025313 52 LGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG-VPGV 126 (255)
Q Consensus 52 ~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~-~~g~ 126 (255)
|+|||. ++|+++|.++|.++ |.|..+.+..+..+..+|||||+|.+.++|++|++ ++|.
T Consensus 3 v~nlp~-----------~~t~~~l~~~f~~~-----g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~ 62 (70)
T PF00076_consen 3 VGNLPP-----------DVTEEELRDFFSQF-----GKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGK 62 (70)
T ss_dssp EESETT-----------TSSHHHHHHHHHTT-----STEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred EcCCCC-----------cCCHHHHHHHHHHh-----hhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCC
Confidence 778888 89999999999955 99999999877788999999999999999988776 6764
No 90
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.16 E-value=8.7e-11 Score=106.53 Aligned_cols=77 Identities=26% Similarity=0.413 Sum_probs=71.9
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 025313 165 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 244 (255)
Q Consensus 165 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~ 244 (255)
-++||||++|+..+++.+|..+|+.||+|.+|.++. ++|+|||.+....+|.+|+++|++..+.++.|++.||.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 367999999999999999999999999999998874 57899999999999999999999999999999999998
Q ss_pred CCC
Q 025313 245 TTP 247 (255)
Q Consensus 245 ~~~ 247 (255)
...
T Consensus 494 g~G 496 (894)
T KOG0132|consen 494 GKG 496 (894)
T ss_pred cCC
Confidence 653
No 91
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.08 E-value=1.9e-11 Score=95.56 Aligned_cols=140 Identities=17% Similarity=0.164 Sum_probs=114.9
Q ss_pred CCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhCC
Q 025313 44 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGV 123 (255)
Q Consensus 44 ~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~~ 123 (255)
...++|| |+|+.. .|++|-|.|+|.|. |+|..|.|....++..+ ||||.|.++-++.-|+.|
T Consensus 7 e~drtl~-v~n~~~-----------~v~eelL~Elfiqa-----GPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L 68 (267)
T KOG4454|consen 7 EMDRTLL-VQNMYS-----------GVSEELLSELFIQA-----GPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQL 68 (267)
T ss_pred chhhHHH-HHhhhh-----------hhhHHHHHHHhhcc-----CceEEEeCCCCccCCCc-eeeeecccccchhhhhhh
Confidence 4456788 999999 99999999999998 99999999887788888 999999999999887776
Q ss_pred -CCCceecCCCCCCCCCcCCCCCCCCCCcCCCCCCCCCCCCCccceEEEcC----CCCCCCHHHHHHHHhcCCCEEEEEE
Q 025313 124 -PGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTG----LSFYTSEKTLRAAFEGFGELVEVKI 198 (255)
Q Consensus 124 -~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~n----Lp~~~t~~~L~~~F~~fG~i~~v~i 198 (255)
||+.+ .......+++.++ |+..++++.+.+.|+.-|.+..+++
T Consensus 69 ~ng~~l--------------------------------~~~e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~ 116 (267)
T KOG4454|consen 69 ENGDDL--------------------------------EEDEEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRI 116 (267)
T ss_pred cccchh--------------------------------ccchhhcccccCCCcchhhhhcchhhheeeecccCCCCCccc
Confidence 66531 1111245566777 7888899999999999999999999
Q ss_pred EecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC
Q 025313 199 IMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIIN 234 (255)
Q Consensus 199 ~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~ 234 (255)
.++. +|+++.++|+.+.-..+...++...++..+-
T Consensus 117 ~~~~-d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~ 151 (267)
T KOG4454|consen 117 PTDN-DGRNRNFGFVTYQRLCAVPFALDLYQGLELF 151 (267)
T ss_pred cccc-cCCccCccchhhhhhhcCcHHhhhhcccCcC
Confidence 9998 5999999999998877777788766665443
No 92
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.08 E-value=2.3e-10 Score=91.41 Aligned_cols=141 Identities=19% Similarity=0.224 Sum_probs=102.5
Q ss_pred ccceEEeecCCccceEEeeeCCHHHHHHHhCCCCCceecCCCCCCCCCcCCCCC--CCCCCcCCCCCCCCCCCCCccceE
Q 025313 92 DAQMCIYHVSWQSNFGFCCELDDECAQELTGVPGVLSVQPDENFGSENKDYGGN--NLQNSMVPSDSSEASPTQIKTKKL 169 (255)
Q Consensus 92 ~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l 169 (255)
...+..+.-+..++++|+.|.....-.++...... +..... .+.......+ .....-+....+|
T Consensus 128 ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~-------------Kki~~~~VR~a~gtswed-Psl~ew~~~DfRI 193 (290)
T KOG0226|consen 128 KTKLVRDRPQPIRPEAFESFKASDALLKAETEKEK-------------KKIGKPPVRLAAGTSWED-PSLAEWDEDDFRI 193 (290)
T ss_pred hhhhhhcCCCccCcccccCcchhhhhhhhcccccc-------------ccccCcceeeccccccCC-cccccCcccccee
Confidence 33344455677789999999887776655432110 000000 0000000011 0112334557899
Q ss_pred EEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCC
Q 025313 170 FVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTT 246 (255)
Q Consensus 170 ~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~~ 246 (255)
|++.|.-.++.+-|-..|.+|-.....++++|+.||+++||+||.|.+..++..|++.|+|..++.++|++.-+..+
T Consensus 194 fcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~wk 270 (290)
T KOG0226|consen 194 FCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEWK 270 (290)
T ss_pred ecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988765433
No 93
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.07 E-value=3.7e-09 Score=83.11 Aligned_cols=92 Identities=23% Similarity=0.323 Sum_probs=75.4
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCC-CcceEEEEEeCCHHHHHHHHHHhCCceeC---CEE
Q 025313 162 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISK-RSKGYAFIEYTTEEAASAALKEMNGKIIN---GWM 237 (255)
Q Consensus 162 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g-~~rg~aFV~F~~~~~A~~Al~~l~g~~l~---g~~ 237 (255)
.+...+||||.|||.++...+|..+|+.|-..+.+.|......+ ..+-+|||.|.+..+|..|+.+|||..++ +..
T Consensus 30 ~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 30 EPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred cccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 34457899999999999999999999999877777554432222 34569999999999999999999999997 789
Q ss_pred EEEEEecCCCCCCCCC
Q 025313 238 IVVDVAKTTPKYSRGR 253 (255)
Q Consensus 238 l~V~~a~~~~~~~~~r 253 (255)
|++++|++..++.+++
T Consensus 110 LhiElAKSNtK~kr~k 125 (284)
T KOG1457|consen 110 LHIELAKSNTKRKRRK 125 (284)
T ss_pred eEeeehhcCcccccCC
Confidence 9999999877655544
No 94
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=2.2e-09 Score=93.82 Aligned_cols=162 Identities=21% Similarity=0.217 Sum_probs=110.9
Q ss_pred CCCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceE--E--eecCCccc---eEEeeeCC
Q 025313 41 NSQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMC--I--YHVSWQSN---FGFCCELD 113 (255)
Q Consensus 41 ~~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~--~--~~~~~~~g---~aFV~f~~ 113 (255)
..+.-|+.+| +|.||+ +++|+.|...|. .||++. |... . ...-.++| |+|..|++
T Consensus 254 ~~~~~S~KVF-vGGlp~-----------dise~~i~~~F~-----~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~ 315 (520)
T KOG0129|consen 254 RSPRYSRKVF-VGGLPW-----------DITEAQINASFG-----QFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFED 315 (520)
T ss_pred Ccccccccee-ecCCCc-----------cccHHHHHhhcc-----cccceE-eecCCCccccccCCCCCcccEEEEEecc
Confidence 3556677888 999999 999999999999 669873 1211 1 11122557 99999999
Q ss_pred HHHHHHHhCC----CCC--ceecCCCCCCCCCcCCCCCCCCCCcCCCCCC---CCCCCCCccceEEEcCCCCCCCHHHHH
Q 025313 114 DECAQELTGV----PGV--LSVQPDENFGSENKDYGGNNLQNSMVPSDSS---EASPTQIKTKKLFVTGLSFYTSEKTLR 184 (255)
Q Consensus 114 ~e~a~~a~~~----~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~V~nLp~~~t~~~L~ 184 (255)
+.++++++.- .+. +.+....... +. -....+...+.. .....-.+.+||||++||.-++.++|-
T Consensus 316 E~sV~~Ll~aC~~~~~~~yf~vss~~~k~---k~----VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA 388 (520)
T KOG0129|consen 316 ERSVQSLLSACSEGEGNYYFKVSSPTIKD---KE----VQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELA 388 (520)
T ss_pred hHHHHHHHHHHhhcccceEEEEecCcccc---cc----eeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHH
Confidence 9999776531 111 1111111100 00 000011111100 112233457899999999999999999
Q ss_pred HHHh-cCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 025313 185 AAFE-GFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 227 (255)
Q Consensus 185 ~~F~-~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~ 227 (255)
.+|. -||.|..+-|-.|.+-+=++|-|=|.|.+..+-.+||.+
T Consensus 389 ~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 389 MIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred HHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 9998 799999999999977888999999999999999999864
No 95
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.06 E-value=4.7e-09 Score=89.20 Aligned_cols=171 Identities=19% Similarity=0.225 Sum_probs=113.4
Q ss_pred CCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh-CCCCC----
Q 025313 52 LGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT-GVPGV---- 126 (255)
Q Consensus 52 ~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~-~~~g~---- 126 (255)
++|+-+ -||-+-|-..|. .||.|..|....+ ...--|.|+|.|++.|+.|. .++|.
T Consensus 155 ie~m~y-----------pVslDVLHqvFS-----~fG~VlKIiTF~K---nn~FQALvQy~d~~sAq~AK~aLdGqnIyn 215 (492)
T KOG1190|consen 155 IENMFY-----------PVSLDVLHQVFS-----KFGFVLKIITFTK---NNGFQALVQYTDAVSAQAAKLALDGQNIYN 215 (492)
T ss_pred ecccee-----------eeEHHHHHHHHh-----hcceeEEEEEEec---ccchhhhhhccchhhHHHHHHhccCCcccC
Confidence 677777 699999999999 4499975554322 22336899999999996664 34542
Q ss_pred ----ceecC-------CCCCCCCCcCCCCCCCCCC-------------------------cCCCCCCCC------CCCCC
Q 025313 127 ----LSVQP-------DENFGSENKDYGGNNLQNS-------------------------MVPSDSSEA------SPTQI 164 (255)
Q Consensus 127 ----~~~~~-------~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~------~~~~~ 164 (255)
+.+.. .+....+.+++..-.++.. ..|...... -....
T Consensus 216 gcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~ 295 (492)
T KOG1190|consen 216 GCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPS 295 (492)
T ss_pred ceeEEEeehhhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCC
Confidence 11100 0000111122211111111 011110000 00011
Q ss_pred ccceEEEcCCCC-CCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 025313 165 KTKKLFVTGLSF-YTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 243 (255)
Q Consensus 165 ~~~~l~V~nLp~-~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a 243 (255)
.+..|-|.||.. .+|.+-|..+|+-||.|..|+|+..+. --|.|+|.+...|+-|+.+|+|+.+.|++|+|.++
T Consensus 296 ~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~S 370 (492)
T KOG1190|consen 296 ANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLS 370 (492)
T ss_pred CceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeec
Confidence 257788888865 579999999999999999999998762 36999999999999999999999999999999999
Q ss_pred cCC
Q 025313 244 KTT 246 (255)
Q Consensus 244 ~~~ 246 (255)
+-.
T Consensus 371 KH~ 373 (492)
T KOG1190|consen 371 KHT 373 (492)
T ss_pred cCc
Confidence 844
No 96
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.06 E-value=2.7e-10 Score=91.46 Aligned_cols=64 Identities=9% Similarity=0.035 Sum_probs=56.4
Q ss_pred CcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhCCC
Q 025313 45 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGVP 124 (255)
Q Consensus 45 ~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~~~ 124 (255)
+..+++ |+||++ ++|+++|+++|.++ |.|.+|+|..+ +..++||||+|.++++++.|+.|+
T Consensus 4 ~g~TV~-V~NLS~-----------~tTE~dLrefFS~~-----G~I~~V~I~~D--~et~gfAfVtF~d~~aaetAllLn 64 (243)
T PLN03121 4 GGYTAE-VTNLSP-----------KATEKDVYDFFSHC-----GAIEHVEIIRS--GEYACTAYVTFKDAYALETAVLLS 64 (243)
T ss_pred CceEEE-EecCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEecC--CCcceEEEEEECCHHHHHHHHhcC
Confidence 345677 999999 99999999999966 99999998854 666789999999999999999999
Q ss_pred CCc
Q 025313 125 GVL 127 (255)
Q Consensus 125 g~~ 127 (255)
|..
T Consensus 65 Ga~ 67 (243)
T PLN03121 65 GAT 67 (243)
T ss_pred CCe
Confidence 864
No 97
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.06 E-value=7.5e-10 Score=97.54 Aligned_cols=84 Identities=27% Similarity=0.506 Sum_probs=78.3
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 025313 164 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 243 (255)
Q Consensus 164 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a 243 (255)
..+++|||.+|...+...+|+.+|++||.|+-.++++...+.--+.|+||++.+.++|.++|..||.+.|.|+.|.|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 34679999999999999999999999999999999998877778999999999999999999999999999999999999
Q ss_pred cCCC
Q 025313 244 KTTP 247 (255)
Q Consensus 244 ~~~~ 247 (255)
+..+
T Consensus 483 KNEp 486 (940)
T KOG4661|consen 483 KNEP 486 (940)
T ss_pred ccCc
Confidence 8764
No 98
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.06 E-value=2.1e-10 Score=105.66 Aligned_cols=161 Identities=22% Similarity=0.347 Sum_probs=126.2
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHH-HHH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECA-QEL 120 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a-~~a 120 (255)
....+.+|| +|||+. .+++.+|...|... |.|.+|.|....-++..-||||.|.+..++ .+.
T Consensus 368 D~~atrTLf-~Gnl~~-----------kl~eseiR~af~e~-----gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak 430 (975)
T KOG0112|consen 368 DFRATRTLF-LGNLDS-----------KLTESEIRPAFDES-----GKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAK 430 (975)
T ss_pred chhhhhhhh-hcCccc-----------chhhhhhhhhhhhh-----ccccccccccCCCCcccchhhhhhhccccCcccc
Confidence 345677788 999999 99999999999966 999999998777788888999999999888 444
Q ss_pred hCCCCCceecCCCCCCCCCcCCCCCCCCCCcCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEe
Q 025313 121 TGVPGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIM 200 (255)
Q Consensus 121 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~ 200 (255)
.++.+...+.... +... ........+.+++++|+.++....|...|..||.|..+.+-
T Consensus 431 ~e~s~~~I~~g~~------r~gl---------------G~~kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~- 488 (975)
T KOG0112|consen 431 FEESGPLIGNGTH------RIGL---------------GQPKSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR- 488 (975)
T ss_pred hhhcCCccccCcc------cccc---------------cccccccceeeccCCCCCCChHHHHHHHhhccCcceeeecc-
Confidence 4444322100000 0000 01133457889999999999999999999999999987654
Q ss_pred cCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC--EEEEEEEecCC
Q 025313 201 DKISKRSKGYAFIEYTTEEAASAALKEMNGKIING--WMIVVDVAKTT 246 (255)
Q Consensus 201 d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g--~~l~V~~a~~~ 246 (255)
.|.+ ||+|.|++...|+.|+..|-|..|+| ++|+|.++...
T Consensus 489 ---hgq~--yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 489 ---HGQP--YAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPP 531 (975)
T ss_pred ---cCCc--ceeeecccCccchhhHHHHhcCcCCCCCcccccccccCC
Confidence 3444 99999999999999999999999996 78999999865
No 99
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.05 E-value=2.6e-10 Score=93.02 Aligned_cols=62 Identities=11% Similarity=0.095 Sum_probs=54.6
Q ss_pred cccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhCCCC
Q 025313 46 TTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGVPG 125 (255)
Q Consensus 46 s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~~~g 125 (255)
.+++| |+|||+ .+|+++|+++|..+ |.|.+|+|..+. .++|||||+|.++++|+.|+.|+|
T Consensus 4 ~rtVf-VgNLs~-----------~tTE~dLrefFS~~-----G~I~~V~I~~d~--~~~GfAFVtF~d~eaAe~AllLnG 64 (260)
T PLN03120 4 VRTVK-VSNVSL-----------KATERDIKEFFSFS-----GDIEYVEMQSEN--ERSQIAYVTFKDPQGAETALLLSG 64 (260)
T ss_pred CCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEeecC--CCCCEEEEEeCcHHHHHHHHHhcC
Confidence 45678 999999 99999999999966 999999997543 367999999999999999998887
Q ss_pred C
Q 025313 126 V 126 (255)
Q Consensus 126 ~ 126 (255)
.
T Consensus 65 ~ 65 (260)
T PLN03120 65 A 65 (260)
T ss_pred C
Confidence 5
No 100
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.02 E-value=1.7e-09 Score=87.90 Aligned_cols=81 Identities=26% Similarity=0.477 Sum_probs=75.5
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 025313 165 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 244 (255)
Q Consensus 165 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~ 244 (255)
...+|+|.|||..+++++|+++|..||++..+-+..|+ .|.+.|.|-|.|...++|.+|++.+||..++|+.+++....
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 35789999999999999999999999999999999988 99999999999999999999999999999999999888876
Q ss_pred CC
Q 025313 245 TT 246 (255)
Q Consensus 245 ~~ 246 (255)
+.
T Consensus 161 ~~ 162 (243)
T KOG0533|consen 161 SP 162 (243)
T ss_pred Cc
Confidence 54
No 101
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.98 E-value=4.7e-09 Score=87.42 Aligned_cols=85 Identities=21% Similarity=0.309 Sum_probs=76.9
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHhcCCCEE--------EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 025313 162 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELV--------EVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKII 233 (255)
Q Consensus 162 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~--------~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l 233 (255)
.+..++.|||.|||..+|.+++.++|+.+|.|. .|+|.++. .|..+|-|.+.|--.++..-|++.|++..|
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~ 208 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDEL 208 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccc
Confidence 345577899999999999999999999999875 38899988 699999999999999999999999999999
Q ss_pred CCEEEEEEEecCCC
Q 025313 234 NGWMIVVDVAKTTP 247 (255)
Q Consensus 234 ~g~~l~V~~a~~~~ 247 (255)
.|+.|+|+.|+-..
T Consensus 209 rg~~~rVerAkfq~ 222 (382)
T KOG1548|consen 209 RGKKLRVERAKFQM 222 (382)
T ss_pred cCcEEEEehhhhhh
Confidence 99999999997543
No 102
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.98 E-value=1.3e-09 Score=88.74 Aligned_cols=83 Identities=25% Similarity=0.481 Sum_probs=77.4
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 242 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~ 242 (255)
..+...+||+|+++.++.++++..|+.||.|..+.++.|+..|+++|||||+|.+.+.+++|++ |||..|.|+.+.|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 4457889999999999999999999999999999999999999999999999999999999996 999999999999999
Q ss_pred ecCC
Q 025313 243 AKTT 246 (255)
Q Consensus 243 a~~~ 246 (255)
.+..
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 8744
No 103
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.95 E-value=3.9e-09 Score=92.35 Aligned_cols=81 Identities=20% Similarity=0.302 Sum_probs=70.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecC
Q 025313 166 TKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKT 245 (255)
Q Consensus 166 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~ 245 (255)
..+|||+|||.+++.++|+++|.+||.|+...|..-...+...+||||+|.+.++++.|+.+ +-..+++++|.|...++
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 45699999999999999999999999999988876543455459999999999999999966 58889999999999887
Q ss_pred CC
Q 025313 246 TP 247 (255)
Q Consensus 246 ~~ 247 (255)
..
T Consensus 367 ~~ 368 (419)
T KOG0116|consen 367 GF 368 (419)
T ss_pred cc
Confidence 54
No 104
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.92 E-value=2.3e-10 Score=75.85 Aligned_cols=58 Identities=10% Similarity=0.139 Sum_probs=48.7
Q ss_pred CCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhCCCC
Q 025313 52 LGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGVPG 125 (255)
Q Consensus 52 ~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~~~g 125 (255)
|+|||+ .+++++|.++|.++ |.|..+++.....++.+|+|||+|.++++|++|+.+.+
T Consensus 3 i~nlp~-----------~~~~~~l~~~f~~~-----g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~ 60 (70)
T PF14259_consen 3 ISNLPP-----------STTEEDLRNFFSRF-----GPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLN 60 (70)
T ss_dssp EESSTT-----------T--HHHHHHHCTTS-----SBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred EeCCCC-----------CCCHHHHHHHHHhc-----CCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCC
Confidence 677777 89999999999954 99999999886668899999999999999988887643
No 105
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.90 E-value=1e-09 Score=78.95 Aligned_cols=68 Identities=13% Similarity=0.235 Sum_probs=56.3
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEE-eecCCccceEEeeeCCHHHHHHH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDECAQEL 120 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~-~~~~~~~g~aFV~f~~~e~a~~a 120 (255)
....|.+++ ||||++ .+|||+|.++|..+ |.|+.|.|-. +.+..+-|||||+|.+.++|+.|
T Consensus 32 a~r~S~tvy-VgNlSf-----------yttEEqiyELFs~c-----G~irriiMGLdr~kktpCGFCFVeyy~~~dA~~A 94 (153)
T KOG0121|consen 32 ALRKSCTVY-VGNLSF-----------YTTEEQIYELFSKC-----GDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDA 94 (153)
T ss_pred HHhhcceEE-Eeeeee-----------eecHHHHHHHHHhc-----cchheeEeccccCCcCccceEEEEEecchhHHHH
Confidence 346677888 999999 99999999999988 9999888776 44556779999999999999766
Q ss_pred hC-CCCC
Q 025313 121 TG-VPGV 126 (255)
Q Consensus 121 ~~-~~g~ 126 (255)
++ ++|.
T Consensus 95 lryisgt 101 (153)
T KOG0121|consen 95 LRYISGT 101 (153)
T ss_pred HHHhccC
Confidence 64 4553
No 106
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.89 E-value=2.1e-08 Score=70.12 Aligned_cols=80 Identities=20% Similarity=0.275 Sum_probs=70.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcC--CCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC----CEEEEE
Q 025313 167 KKLFVTGLSFYTSEKTLRAAFEGF--GELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIIN----GWMIVV 240 (255)
Q Consensus 167 ~~l~V~nLp~~~t~~~L~~~F~~f--G~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~----g~~l~V 240 (255)
+||.|+|||...+.++|.+++... |....+.++.|-.++.+.|||||.|.+++.|.+-.+.++|.... .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999888643 77888999999999999999999999999999999999998875 456788
Q ss_pred EEecCC
Q 025313 241 DVAKTT 246 (255)
Q Consensus 241 ~~a~~~ 246 (255)
.||+-+
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 888754
No 107
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=4.4e-09 Score=83.77 Aligned_cols=65 Identities=8% Similarity=0.106 Sum_probs=54.7
Q ss_pred CcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEE-eecCCccceEEeeeCCHHHHHHHhC-
Q 025313 45 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDECAQELTG- 122 (255)
Q Consensus 45 ~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~-~~~~~~~g~aFV~f~~~e~a~~a~~- 122 (255)
++.++= |-||+- ++++++|.++|. .||.|..+.+.+ ..+|.+||||||.|.+.++|++|++
T Consensus 188 D~~tvR-vtNLse-----------d~~E~dL~eLf~-----~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~ 250 (270)
T KOG0122|consen 188 DEATVR-VTNLSE-----------DMREDDLEELFR-----PFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIAD 250 (270)
T ss_pred ccceeE-EecCcc-----------ccChhHHHHHhh-----ccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHH
Confidence 344444 888888 999999999999 669999999887 7789999999999999999966664
Q ss_pred CCCC
Q 025313 123 VPGV 126 (255)
Q Consensus 123 ~~g~ 126 (255)
|||.
T Consensus 251 LnG~ 254 (270)
T KOG0122|consen 251 LNGY 254 (270)
T ss_pred ccCc
Confidence 5663
No 108
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.85 E-value=1.2e-10 Score=88.65 Aligned_cols=74 Identities=14% Similarity=0.258 Sum_probs=66.4
Q ss_pred CCCCCCCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEE-eecCCccceEEeeeCCHH
Q 025313 37 SNPWNSQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDE 115 (255)
Q Consensus 37 ~~~~~~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~-~~~~~~~g~aFV~f~~~e 115 (255)
.+|.+.-.+|.-+| +||||+ ++||.||...|+|+ |.|.+|.+++ ..||+++||||.+|+|..
T Consensus 26 ~SWH~~YkdsA~Iy-iggl~~-----------~LtEgDil~VFSqy-----Ge~vdinLiRDk~TGKSKGFaFLcYEDQR 88 (219)
T KOG0126|consen 26 KSWHQEYKDSAYIY-IGGLPY-----------ELTEGDILCVFSQY-----GEIVDINLIRDKKTGKSKGFAFLCYEDQR 88 (219)
T ss_pred cchhhhcccceEEE-ECCCcc-----------cccCCcEEEEeecc-----CceEEEEEEecCCCCcccceEEEEecCcc
Confidence 46777888999899 999999 99999999999977 9999999888 679999999999999999
Q ss_pred HH-HHHhCCCCCc
Q 025313 116 CA-QELTGVPGVL 127 (255)
Q Consensus 116 ~a-~~a~~~~g~~ 127 (255)
+. -|+-.+||+.
T Consensus 89 STILAVDN~NGik 101 (219)
T KOG0126|consen 89 STILAVDNLNGIK 101 (219)
T ss_pred ceEEEEeccCCce
Confidence 98 6677788863
No 109
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.81 E-value=2.3e-08 Score=86.96 Aligned_cols=79 Identities=24% Similarity=0.345 Sum_probs=69.6
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 025313 164 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 243 (255)
Q Consensus 164 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a 243 (255)
....-|-+++|||++|++||.+||+.++ |+++.+.+. +|++.|-|||+|.+.+++++|+ +.+...++.|.|.|--+
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Al-kkdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKAL-KKDRESMGHRYIEVFTA 83 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcCcceEEEeechHHHHHHH-HhhHHHhCCceEEEEcc
Confidence 3466788999999999999999999997 888766665 8999999999999999999999 66889999999999888
Q ss_pred cCC
Q 025313 244 KTT 246 (255)
Q Consensus 244 ~~~ 246 (255)
...
T Consensus 84 ~~~ 86 (510)
T KOG4211|consen 84 GGA 86 (510)
T ss_pred CCc
Confidence 544
No 110
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.79 E-value=4.8e-09 Score=92.39 Aligned_cols=74 Identities=28% Similarity=0.405 Sum_probs=67.2
Q ss_pred CCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEE
Q 025313 161 PTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIV 239 (255)
Q Consensus 161 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~ 239 (255)
..+.+..+|+|-|||..+++++|..+|+.||+|+.++.-+ ..+|..||+|-|.-+|+.|+++|++..+.|++|+
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~-----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP-----NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc-----ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 3356688999999999999999999999999999976644 4588999999999999999999999999999988
No 111
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.79 E-value=1.6e-08 Score=91.39 Aligned_cols=84 Identities=27% Similarity=0.447 Sum_probs=75.5
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecC---CCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDK---ISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIV 239 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~---~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~ 239 (255)
++.+++|||+||++.++++.|...|+.||+|.+++|+-.+ +..+.+-+|||-|.+..+|++|++.|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 4568899999999999999999999999999999998554 2345677999999999999999999999999999999
Q ss_pred EEEecCC
Q 025313 240 VDVAKTT 246 (255)
Q Consensus 240 V~~a~~~ 246 (255)
+.|+++.
T Consensus 251 ~gWgk~V 257 (877)
T KOG0151|consen 251 LGWGKAV 257 (877)
T ss_pred ecccccc
Confidence 9999754
No 112
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.78 E-value=8e-09 Score=84.50 Aligned_cols=60 Identities=8% Similarity=0.087 Sum_probs=53.1
Q ss_pred ccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHHHHhCC
Q 025313 47 TLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELTGV 123 (255)
Q Consensus 47 ~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a~~~ 123 (255)
.+|| |+-|++ +++|.+|...|+.+ |.|+.|+|+.+ -+|+++|||||+|+++.+..+|.+-
T Consensus 102 ~TLF-v~RLny-----------dT~EskLrreF~~Y-----G~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~ 162 (335)
T KOG0113|consen 102 KTLF-VARLNY-----------DTSESKLRREFEKY-----GPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKD 162 (335)
T ss_pred ceee-eeeccc-----------cccHHHHHHHHHhc-----CcceeEEEeeecccCCccceEEEEeccHHHHHHHHHh
Confidence 4677 888988 99999999999955 99999999885 7999999999999999999777653
No 113
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.75 E-value=1.2e-08 Score=81.20 Aligned_cols=72 Identities=22% Similarity=0.582 Sum_probs=66.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCC
Q 025313 167 KKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTT 246 (255)
Q Consensus 167 ~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~~ 246 (255)
..+||++||+.+.+.+|+.+|..||.+..+.+. .||+||+|.+..+|..|+..|||..|.|-++.|.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 368999999999999999999999999999876 358999999999999999999999999988999999854
No 114
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.75 E-value=2.2e-07 Score=78.41 Aligned_cols=168 Identities=15% Similarity=0.154 Sum_probs=113.6
Q ss_pred CCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhCC
Q 025313 44 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGV 123 (255)
Q Consensus 44 ~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~~ 123 (255)
..|..+- |++|-. .+++.+|.+..+ .||+|.-|..+- .+.-|.|+|+|.+.|++...+
T Consensus 29 ~~spvvh-vr~l~~-----------~v~eadl~eal~-----~fG~i~yvt~~P-----~~r~alvefedi~~akn~Vnf 86 (494)
T KOG1456|consen 29 NPSPVVH-VRGLHQ-----------GVVEADLVEALS-----NFGPIAYVTCMP-----HKRQALVEFEDIEGAKNCVNF 86 (494)
T ss_pred CCCceEE-Eecccc-----------ccchhHHHHHHh-----cCCceEEEEecc-----ccceeeeeeccccchhhheeh
Confidence 3444344 888888 899999999988 669996665542 367899999999999877655
Q ss_pred CCCceecCCCCCCCCCcCCCCCCCCCCcCCCCCCCCCCCCCccceEEEc--CCCCCCCHHHHHHHHhcCCCEEEEEEEec
Q 025313 124 PGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVT--GLSFYTSEKTLRAAFEGFGELVEVKIIMD 201 (255)
Q Consensus 124 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~--nLp~~~t~~~L~~~F~~fG~i~~v~i~~d 201 (255)
..--.+ .......+............. .....++..|.+. |--+.+|-+-|..+....|+|..+.|.+.
T Consensus 87 aa~n~i-----~i~gq~Al~NyStsq~i~R~g----~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk 157 (494)
T KOG1456|consen 87 AADNQI-----YIAGQQALFNYSTSQCIERPG----DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK 157 (494)
T ss_pred hccCcc-----cccCchhhcccchhhhhccCC----CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec
Confidence 311000 000001111100000000111 2222335555555 44456899999999999999999988866
Q ss_pred CCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC-C-EEEEEEEecCCC
Q 025313 202 KISKRSKGYAFIEYTTEEAASAALKEMNGKIIN-G-WMIVVDVAKTTP 247 (255)
Q Consensus 202 ~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~-g-~~l~V~~a~~~~ 247 (255)
+|. .|.|+|++.+.|++|...|||..|. | .+|+|++|++..
T Consensus 158 --ngV---QAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 158 --NGV---QAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTR 200 (494)
T ss_pred --cce---eeEEeechhHHHHHHHhhcccccccccceeEEEEecCcce
Confidence 554 6999999999999999999999875 4 689999999874
No 115
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.74 E-value=3e-08 Score=83.74 Aligned_cols=176 Identities=13% Similarity=0.149 Sum_probs=111.5
Q ss_pred CCCCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCc-cccceEEeecCCccceEEeeeCCHHHHH
Q 025313 40 WNSQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNE-KDAQMCIYHVSWQSNFGFCCELDDECAQ 118 (255)
Q Consensus 40 ~~~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v-~~v~i~~~~~~~~~g~aFV~f~~~e~a~ 118 (255)
.+...+.+.+...++||+ ..++.+|..+|.-. -.. .-+.++....|+..|.|.|.|.|+|.-.
T Consensus 53 ~~~~~~~~vvvRaRglpw-----------q~Sd~~ia~ff~gl-----~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rd 116 (508)
T KOG1365|consen 53 KNHSADDNVVVRARGLPW-----------QSSDQDIARFFKGL-----NIANGGRALCLNAQGRRNGEALVRFVDPEGRD 116 (508)
T ss_pred hccccCcceEEEecCCCC-----------CcccCCHHHHHhhh-----hccccceeeeehhhhccccceEEEecCchhhh
Confidence 346677888888999999 89999999988822 122 2222555667888899999999988776
Q ss_pred HHhCCCCC-ceecCCCCCCCCCcCC---CCCCCCCCcCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHhcC----
Q 025313 119 ELTGVPGV-LSVQPDENFGSENKDY---GGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGF---- 190 (255)
Q Consensus 119 ~a~~~~g~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~f---- 190 (255)
-|++-+-. +..+....+......+ .+........ ......--.|.++|||+++++.++.+||.+-
T Consensus 117 lalkRhkhh~g~ryievYka~ge~f~~iagg~s~e~~~-------flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~ 189 (508)
T KOG1365|consen 117 LALKRHKHHMGTRYIEVYKATGEEFLKIAGGTSNEAAP-------FLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVT 189 (508)
T ss_pred hhhHhhhhhccCCceeeeccCchhheEecCCccccCCC-------CCCcccceEEEecCCCCCcchHHHHHhcCCCCccc
Confidence 55543221 1112222221111111 1111100000 0011113457778999999999999999742
Q ss_pred CCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEE
Q 025313 191 GELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVV 240 (255)
Q Consensus 191 G~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V 240 (255)
|..+.+-+++.. +|++.|-|||.|..+++|+.||.. |...++-|.|.+
T Consensus 190 ~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIEl 237 (508)
T KOG1365|consen 190 GGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIEL 237 (508)
T ss_pred CCccceEEEECC-CCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHH
Confidence 345666666555 899999999999999999999954 555555554443
No 116
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.74 E-value=4.5e-09 Score=82.38 Aligned_cols=80 Identities=19% Similarity=0.174 Sum_probs=72.1
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 242 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~ 242 (255)
+...++|||.|+...++++.|.++|-+-|+|..|.|..++ .+..+ ||||.|.++.+..-|++.+||..+.++.+.+++
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 3447899999999999999999999999999999998877 67777 999999999999999999999999999888877
Q ss_pred ec
Q 025313 243 AK 244 (255)
Q Consensus 243 a~ 244 (255)
-.
T Consensus 84 r~ 85 (267)
T KOG4454|consen 84 RC 85 (267)
T ss_pred cc
Confidence 43
No 117
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.74 E-value=1.1e-08 Score=79.63 Aligned_cols=66 Identities=15% Similarity=0.163 Sum_probs=55.8
Q ss_pred CcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEE-eecCCccceEEeeeCCHHHHHHH-hC
Q 025313 45 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDECAQEL-TG 122 (255)
Q Consensus 45 ~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~-~~~~~~~g~aFV~f~~~e~a~~a-~~ 122 (255)
+.++|- |-||-+ .+|.++|...|++| |.|.||.|.. ..|.+++|||||.|.+..+|+.| .+
T Consensus 12 gm~SLk-VdNLTy-----------RTspd~LrrvFekY-----G~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~da 74 (256)
T KOG4207|consen 12 GMTSLK-VDNLTY-----------RTSPDDLRRVFEKY-----GRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDA 74 (256)
T ss_pred cceeEE-ecceec-----------cCCHHHHHHHHHHh-----CcccceecccccccccccceeEEEeeecchHHHHHHh
Confidence 444555 999999 89999999999977 9999999998 56899999999999999999554 45
Q ss_pred CCCCc
Q 025313 123 VPGVL 127 (255)
Q Consensus 123 ~~g~~ 127 (255)
|+|.+
T Consensus 75 mDG~~ 79 (256)
T KOG4207|consen 75 MDGAV 79 (256)
T ss_pred hccee
Confidence 67753
No 118
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.73 E-value=1.7e-08 Score=70.03 Aligned_cols=65 Identities=14% Similarity=0.191 Sum_probs=53.5
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
++...+.|| |.|||+ ++|.|++.++|.++ |.|..|||- .+...+|-|||.|++..+|++|.
T Consensus 14 ppevnriLy-irNLp~-----------~ITseemydlFGky-----g~IrQIRiG--~~k~TrGTAFVVYedi~dAk~A~ 74 (124)
T KOG0114|consen 14 PPEVNRILY-IRNLPF-----------KITSEEMYDLFGKY-----GTIRQIRIG--NTKETRGTAFVVYEDIFDAKKAC 74 (124)
T ss_pred ChhhheeEE-EecCCc-----------cccHHHHHHHhhcc-----cceEEEEec--CccCcCceEEEEehHhhhHHHHH
Confidence 445555566 999999 99999999999966 999998885 56778999999999999996665
Q ss_pred C-CCC
Q 025313 122 G-VPG 125 (255)
Q Consensus 122 ~-~~g 125 (255)
. |+|
T Consensus 75 dhlsg 79 (124)
T KOG0114|consen 75 DHLSG 79 (124)
T ss_pred HHhcc
Confidence 3 454
No 119
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=98.67 E-value=2.6e-08 Score=75.61 Aligned_cols=61 Identities=18% Similarity=0.251 Sum_probs=50.6
Q ss_pred CcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHH-HHHhCC
Q 025313 45 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECA-QELTGV 123 (255)
Q Consensus 45 ~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a-~~a~~~ 123 (255)
..+.++ ||||+. ++++.+|+..|..+ |++.+|.|.. ...|||||+|+++.+| .|...|
T Consensus 9 ~~~kVY-VGnL~~-----------~a~k~eLE~~F~~y-----G~lrsvWvAr----nPPGfAFVEFed~RDA~DAvr~L 67 (195)
T KOG0107|consen 9 GNTKVY-VGNLGS-----------RATKRELERAFSKY-----GPLRSVWVAR----NPPGFAFVEFEDPRDAEDAVRYL 67 (195)
T ss_pred CCceEE-eccCCC-----------CcchHHHHHHHHhc-----CcceeEEEee----cCCCceEEeccCcccHHHHHhhc
Confidence 345577 999999 99999999999955 9999888864 5689999999999999 555566
Q ss_pred CCC
Q 025313 124 PGV 126 (255)
Q Consensus 124 ~g~ 126 (255)
+|.
T Consensus 68 DG~ 70 (195)
T KOG0107|consen 68 DGK 70 (195)
T ss_pred CCc
Confidence 763
No 120
>smart00360 RRM RNA recognition motif.
Probab=98.66 E-value=7.4e-08 Score=62.83 Aligned_cols=55 Identities=15% Similarity=0.220 Sum_probs=47.4
Q ss_pred CCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEee-cCCccceEEeeeCCHHHHHHHhC
Q 025313 52 LGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYH-VSWQSNFGFCCELDDECAQELTG 122 (255)
Q Consensus 52 ~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~-~~~~~g~aFV~f~~~e~a~~a~~ 122 (255)
++|+|. .+++++|.++|.++ |.|.++.+.... ++.++|||||+|.+.++|.+|+.
T Consensus 1 i~~l~~-----------~~~~~~l~~~f~~~-----g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~ 56 (71)
T smart00360 1 VGNLPP-----------DVTEEELRELFSKF-----GKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALE 56 (71)
T ss_pred CCCCCc-----------ccCHHHHHHHHHhh-----CCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHH
Confidence 467777 89999999999965 999999988744 58899999999999999977764
No 121
>smart00362 RRM_2 RNA recognition motif.
Probab=98.65 E-value=5.6e-08 Score=63.67 Aligned_cols=56 Identities=18% Similarity=0.249 Sum_probs=48.0
Q ss_pred ccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhC
Q 025313 49 LFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG 122 (255)
Q Consensus 49 ~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~ 122 (255)
++ ++|+|. .+++++|.++|.++ |.|.++++.... +.++|+|||+|.+.++|++|+.
T Consensus 2 v~-i~~l~~-----------~~~~~~l~~~~~~~-----g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~ 57 (72)
T smart00362 2 LF-VGNLPP-----------DVTEEDLKELFSKF-----GPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIE 57 (72)
T ss_pred EE-EcCCCC-----------cCCHHHHHHHHHhc-----CCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHH
Confidence 44 778877 89999999999955 999999988665 7889999999999999977664
No 122
>PLN03213 repressor of silencing 3; Provisional
Probab=98.62 E-value=4.4e-08 Score=85.32 Aligned_cols=62 Identities=13% Similarity=0.232 Sum_probs=50.8
Q ss_pred CcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCH--HHHHHHh-
Q 025313 45 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDD--ECAQELT- 121 (255)
Q Consensus 45 ~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~--e~a~~a~- 121 (255)
...++| ||||++ ++|+++|...|.++ |.|.+|.|+ +.+| ||||||+|.+. .++.+|+
T Consensus 9 ~gMRIY-VGNLSy-----------dVTEDDLravFSeF-----GsVkdVEIp-RETG--RGFAFVEMssdddaEeeKAIS 68 (759)
T PLN03213 9 GGVRLH-VGGLGE-----------SVGRDDLLKIFSPM-----GTVDAVEFV-RTKG--RSFAYIDFSPSSTNSLTKLFS 68 (759)
T ss_pred cceEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeeEEEEe-cccC--CceEEEEecCCcHHHHHHHHH
Confidence 345678 999999 99999999999955 999999998 5566 99999999987 4454444
Q ss_pred CCCCC
Q 025313 122 GVPGV 126 (255)
Q Consensus 122 ~~~g~ 126 (255)
.|||.
T Consensus 69 aLNGA 73 (759)
T PLN03213 69 TYNGC 73 (759)
T ss_pred HhcCC
Confidence 56775
No 123
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=3.3e-08 Score=77.62 Aligned_cols=65 Identities=22% Similarity=0.286 Sum_probs=56.0
Q ss_pred CCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEE-eecCCccceEEeeeCCHHHHHHHh-
Q 025313 44 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDECAQELT- 121 (255)
Q Consensus 44 ~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~-~~~~~~~g~aFV~f~~~e~a~~a~- 121 (255)
...++|+ ||+|.. +|++.-|...|. .||.|++|.+.. +.++++||||||+|...|+|.+|+
T Consensus 8 ~~KrtlY-VGGlad-----------eVtekvLhaAFI-----PFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiD 70 (298)
T KOG0111|consen 8 NQKRTLY-VGGLAD-----------EVTEKVLHAAFI-----PFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAID 70 (298)
T ss_pred ccceeEE-eccchH-----------HHHHHHHHhccc-----cccchhhcccccchhcccccceeEEEeeccchhHHHhh
Confidence 3456677 999999 999999999999 789999999887 778899999999999999996655
Q ss_pred CCCC
Q 025313 122 GVPG 125 (255)
Q Consensus 122 ~~~g 125 (255)
.||+
T Consensus 71 NMne 74 (298)
T KOG0111|consen 71 NMNE 74 (298)
T ss_pred cCch
Confidence 4665
No 124
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.56 E-value=5.9e-06 Score=69.94 Aligned_cols=78 Identities=24% Similarity=0.245 Sum_probs=69.8
Q ss_pred CccceEEEcCCCCC-CCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 025313 164 IKTKKLFVTGLSFY-TSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 242 (255)
Q Consensus 164 ~~~~~l~V~nLp~~-~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~ 242 (255)
.++..+.|-+|+.. ++-+.|..+|-.||.|+.|++++.+ .|-|.|++.+....++|+..||+..+-|.+|.|.+
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~ 359 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCV 359 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEEee
Confidence 35678999999865 5778899999999999999999876 46899999999999999999999999999999999
Q ss_pred ecCC
Q 025313 243 AKTT 246 (255)
Q Consensus 243 a~~~ 246 (255)
++..
T Consensus 360 SkQ~ 363 (494)
T KOG1456|consen 360 SKQN 363 (494)
T ss_pred cccc
Confidence 8754
No 125
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.55 E-value=7.5e-08 Score=75.04 Aligned_cols=65 Identities=11% Similarity=0.116 Sum_probs=53.2
Q ss_pred ccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEE-eecCCccceEEeeeCCHHHH-HHHhCCCCC
Q 025313 49 LFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDECA-QELTGVPGV 126 (255)
Q Consensus 49 ~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~-~~~~~~~g~aFV~f~~~e~a-~~a~~~~g~ 126 (255)
+..++.+|+ -+.+.++..+|.|. .|.|...|+.+ ..||.++|||||+|++++.| -+|-.||+.
T Consensus 51 ~~~~~~~p~-----------g~~e~~~~~~~~q~----~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNY 115 (214)
T KOG4208|consen 51 VVYVDHIPH-----------GFFETEILNYFRQF----GGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNY 115 (214)
T ss_pred ceeeccccc-----------chhHHHHhhhhhhc----CCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhh
Confidence 333777777 78899999888844 38888888866 78999999999999999999 777788876
Q ss_pred ce
Q 025313 127 LS 128 (255)
Q Consensus 127 ~~ 128 (255)
+.
T Consensus 116 Ll 117 (214)
T KOG4208|consen 116 LL 117 (214)
T ss_pred hh
Confidence 54
No 126
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.51 E-value=1.5e-07 Score=83.01 Aligned_cols=63 Identities=19% Similarity=0.368 Sum_probs=55.1
Q ss_pred ccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEE-eecCCccceEEeeeCCHHHHHHHh-CCC
Q 025313 47 TLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDECAQELT-GVP 124 (255)
Q Consensus 47 ~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~-~~~~~~~g~aFV~f~~~e~a~~a~-~~~ 124 (255)
..+| |||+|+ ++++++|.++|.+. |.|.++++.. ..+|+.+||||++|.+.+++..|+ .+|
T Consensus 19 ~~v~-vgnip~-----------~~se~~l~~~~~~~-----g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lN 81 (435)
T KOG0108|consen 19 SSVF-VGNIPY-----------EGSEEQLLSIFSGV-----GPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLN 81 (435)
T ss_pred cceE-ecCCCC-----------cccHHHHHHHHhcc-----CccceeeecccccCCCcCceeeEecCchhhHHHHHHhcC
Confidence 6677 999999 99999999999977 9999999876 668999999999999999995554 457
Q ss_pred CC
Q 025313 125 GV 126 (255)
Q Consensus 125 g~ 126 (255)
|.
T Consensus 82 g~ 83 (435)
T KOG0108|consen 82 GA 83 (435)
T ss_pred Cc
Confidence 64
No 127
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=98.47 E-value=2.5e-07 Score=76.81 Aligned_cols=64 Identities=13% Similarity=0.190 Sum_probs=51.1
Q ss_pred CcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh-CC
Q 025313 45 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT-GV 123 (255)
Q Consensus 45 ~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~-~~ 123 (255)
+.+.|- |.|+|+ ..-+.||+..|+++ |+|.||.|+-. .-.+||||||+|+++++|++|. ++
T Consensus 95 ~pkRLh-VSNIPF-----------rFRdpDL~aMF~kf-----G~VldVEIIfN-ERGSKGFGFVTmen~~dadRARa~L 156 (376)
T KOG0125|consen 95 TPKRLH-VSNIPF-----------RFRDPDLRAMFEKF-----GKVLDVEIIFN-ERGSKGFGFVTMENPADADRARAEL 156 (376)
T ss_pred CCceeE-eecCCc-----------cccCccHHHHHHhh-----CceeeEEEEec-cCCCCccceEEecChhhHHHHHHHh
Confidence 334455 788888 89999999999955 99999999744 3347999999999999996664 56
Q ss_pred CCC
Q 025313 124 PGV 126 (255)
Q Consensus 124 ~g~ 126 (255)
+|.
T Consensus 157 Hgt 159 (376)
T KOG0125|consen 157 HGT 159 (376)
T ss_pred hcc
Confidence 774
No 128
>smart00361 RRM_1 RNA recognition motif.
Probab=98.42 E-value=3e-07 Score=60.91 Aligned_cols=54 Identities=9% Similarity=0.038 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHhhCCccccc-eEE-eec--CCccceEEeeeCCHHHHHHHhC-CCCC
Q 025313 72 KAQMVDRYAQILTKVLGNEKDAQ-MCI-YHV--SWQSNFGFCCELDDECAQELTG-VPGV 126 (255)
Q Consensus 72 ~~~l~~~F~~~~~~~~G~v~~v~-i~~-~~~--~~~~g~aFV~f~~~e~a~~a~~-~~g~ 126 (255)
+++|.++|.... ..||.|.+|. +.. ..+ +.++|||||+|.+.++|.+|+. |+|.
T Consensus 2 ~~~l~~~~~~~~-~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~ 60 (70)
T smart00361 2 DEDFEREFSEEE-EYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGR 60 (70)
T ss_pred chhHHHHHHHHH-HhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 567888887221 2449999996 444 444 8899999999999999966654 5764
No 129
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.42 E-value=9.7e-07 Score=59.06 Aligned_cols=69 Identities=28% Similarity=0.400 Sum_probs=47.9
Q ss_pred ceEEEcCCCCCCCHHH----HHHHHhcCC-CEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 025313 167 KKLFVTGLSFYTSEKT----LRAAFEGFG-ELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 241 (255)
Q Consensus 167 ~~l~V~nLp~~~t~~~----L~~~F~~fG-~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~ 241 (255)
..|+|.|||...+... |++++..+| .|..| + .+-|+|.|.+++.|.+|.+.|+|..+.|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-------~---~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-------S---GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-------e---CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4599999999988765 567777785 45555 1 3579999999999999999999999999999999
Q ss_pred EecC
Q 025313 242 VAKT 245 (255)
Q Consensus 242 ~a~~ 245 (255)
+...
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 9853
No 130
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.40 E-value=1.5e-06 Score=78.80 Aligned_cols=168 Identities=13% Similarity=0.007 Sum_probs=114.3
Q ss_pred CCCHHHHHHHHHHHHHHhhC-CccccceEEeecCCc-cceEEeeeCCHHHHHHHhCCCCCceecCC-CCCCCCCcCC---
Q 025313 69 VVTKAQMVDRYAQILTKVLG-NEKDAQMCIYHVSWQ-SNFGFCCELDDECAQELTGVPGVLSVQPD-ENFGSENKDY--- 142 (255)
Q Consensus 69 ~vt~~~l~~~F~~~~~~~~G-~v~~v~i~~~~~~~~-~g~aFV~f~~~e~a~~a~~~~g~~~~~~~-~~~~~~~~~~--- 142 (255)
+..+.+++++|. | .|.++.+..+..+.+ .|-++|.|....++++|.+-|..+.+... ...+......
T Consensus 322 n~~~nd~rkfF~-------g~~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g~~~~~~a 394 (944)
T KOG4307|consen 322 NNDFNDGRKFFP-------GRNAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPGNLGRNGA 394 (944)
T ss_pred ccccchhhhhcC-------cccccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCCccccccC
Confidence 788999999988 6 566667777666666 79999999999999999887654433111 1111100000
Q ss_pred -----------CCCCCCCCcCCCCCCC-----CCCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEE-EEEEecCCCC
Q 025313 143 -----------GGNNLQNSMVPSDSSE-----ASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVE-VKIIMDKISK 205 (255)
Q Consensus 143 -----------~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~-v~i~~d~~~g 205 (255)
.+........++.... ..-....+..|||..||..+++.++.++|..--.|++ +.|.+-. ++
T Consensus 395 ~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~ 473 (944)
T KOG4307|consen 395 PPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TD 473 (944)
T ss_pred ccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cc
Confidence 0000000111111111 1112234679999999999999999999998777777 6665555 78
Q ss_pred CcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 025313 206 RSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 244 (255)
Q Consensus 206 ~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~ 244 (255)
+-++.|||.|..++++.+|..--+.+.++.+.|+|.-..
T Consensus 474 ~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~ 512 (944)
T KOG4307|consen 474 LLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIA 512 (944)
T ss_pred cccchhhheeccccccchhhhcccccccCceEEEeechh
Confidence 889999999999999999987767777888889987643
No 131
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.40 E-value=6.3e-07 Score=58.88 Aligned_cols=55 Identities=16% Similarity=0.233 Sum_probs=47.5
Q ss_pred CCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhC
Q 025313 52 LGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG 122 (255)
Q Consensus 52 ~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~ 122 (255)
++|||. .+++++|.++|.++ |.|..+.+.....+.++|+|||+|.+.++|+.|+.
T Consensus 4 i~~l~~-----------~~~~~~i~~~~~~~-----g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~ 58 (74)
T cd00590 4 VGNLPP-----------DVTEEDLRELFSKF-----GKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALE 58 (74)
T ss_pred EeCCCC-----------ccCHHHHHHHHHhc-----CCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHH
Confidence 677777 89999999999955 99999998876666789999999999999977664
No 132
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.34 E-value=5.5e-07 Score=75.83 Aligned_cols=85 Identities=28% Similarity=0.314 Sum_probs=77.5
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCCEE--------EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELV--------EVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIIN 234 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~--------~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~ 234 (255)
.....++||-+||..+++++|.++|.++|.|. .+.|.+|++|+.++|-|.|.|++...|+.|+..+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 34567899999999999999999999999874 3678899999999999999999999999999999999999
Q ss_pred CEEEEEEEecCCC
Q 025313 235 GWMIVVDVAKTTP 247 (255)
Q Consensus 235 g~~l~V~~a~~~~ 247 (255)
|..|+|.+|....
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999999988665
No 133
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.21 E-value=4.7e-06 Score=59.59 Aligned_cols=70 Identities=29% Similarity=0.418 Sum_probs=44.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC-----CceeCCEEEEEE
Q 025313 167 KKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMN-----GKIINGWMIVVD 241 (255)
Q Consensus 167 ~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~-----g~~l~g~~l~V~ 241 (255)
..|++.|++..++.++|++.|++||.|..|.+.... . -|||.|.+.+.|+.|+..+. +..+.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~----~--~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD----T--EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-----S--EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC----C--EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 468999999999999999999999999999887543 2 79999999999999998773 345666665554
Q ss_pred E
Q 025313 242 V 242 (255)
Q Consensus 242 ~ 242 (255)
.
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 4
No 134
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.19 E-value=1.6e-06 Score=63.12 Aligned_cols=53 Identities=15% Similarity=0.250 Sum_probs=47.1
Q ss_pred CCCHHHHHHHHHHHHHHhhCCccccceEE-eecCCccceEEeeeCCHHHHHHHhC-CCCC
Q 025313 69 VVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDECAQELTG-VPGV 126 (255)
Q Consensus 69 ~vt~~~l~~~F~~~~~~~~G~v~~v~i~~-~~~~~~~g~aFV~f~~~e~a~~a~~-~~g~ 126 (255)
..|+++|.+.|..+ |.|+.+++-. ..+|..+|||.|+|++.+.|++|+. +||.
T Consensus 83 EatEedi~d~F~dy-----GeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~ 137 (170)
T KOG0130|consen 83 EATEEDIHDKFADY-----GEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGA 137 (170)
T ss_pred chhHHHHHHHHhhc-----ccccceeeccccccccccceeeeehHhHHHHHHHHHhccch
Confidence 89999999999966 9999999776 7799999999999999999977765 5764
No 135
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=4.3e-06 Score=70.31 Aligned_cols=62 Identities=15% Similarity=0.103 Sum_probs=50.8
Q ss_pred EEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEE-eecCCccceEEeeeCCHHHH-HHHhCCCCCc
Q 025313 59 LVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDECA-QELTGVPGVL 127 (255)
Q Consensus 59 ~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~-~~~~~~~g~aFV~f~~~e~a-~~a~~~~g~~ 127 (255)
|||+.+.| .+|+++|.-.|+ -||+|.++.+++ +.+|-+--||||+|++.++. +|-.+|.+++
T Consensus 242 LFVCKLNP--VTtDeDLeiIFS-----rFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvL 305 (479)
T KOG0415|consen 242 LFVCKLNP--VTTDEDLEIIFS-----RFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVL 305 (479)
T ss_pred EEEEecCC--cccccchhhHHh-----hcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhccee
Confidence 44544444 599999999999 669999999887 77899999999999999999 5556786653
No 136
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.04 E-value=1.3e-05 Score=67.12 Aligned_cols=80 Identities=19% Similarity=0.425 Sum_probs=63.5
Q ss_pred cceEEEcCCCCCCCHHH----H--HHHHhcCCCEEEEEEEecCCCCC-cce-E-EEEEeCCHHHHHHHHHHhCCceeCCE
Q 025313 166 TKKLFVTGLSFYTSEKT----L--RAAFEGFGELVEVKIIMDKISKR-SKG-Y-AFIEYTTEEAASAALKEMNGKIINGW 236 (255)
Q Consensus 166 ~~~l~V~nLp~~~t~~~----L--~~~F~~fG~i~~v~i~~d~~~g~-~rg-~-aFV~F~~~~~A~~Al~~l~g~~l~g~ 236 (255)
..-+||-+||+.+..++ | .++|++||.|..+.+.+....-. -.+ + -||+|.+.++|.+||.+.+|..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 45689999999887666 2 48999999999987765542111 112 2 39999999999999999999999999
Q ss_pred EEEEEEecC
Q 025313 237 MIVVDVAKT 245 (255)
Q Consensus 237 ~l~V~~a~~ 245 (255)
.|+..|...
T Consensus 194 ~lkatYGTT 202 (480)
T COG5175 194 VLKATYGTT 202 (480)
T ss_pred eEeeecCch
Confidence 999998654
No 137
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.03 E-value=3.1e-05 Score=70.51 Aligned_cols=76 Identities=13% Similarity=0.234 Sum_probs=67.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 025313 167 KKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 242 (255)
Q Consensus 167 ~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~ 242 (255)
+.|-+.|+|++++-+||.+||..|-.+-.-.+++-.+.|.+.|-|-|-|++.++|..|...|++..|.+++|.|.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 4889999999999999999999997765443444445899999999999999999999999999999999998864
No 138
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.99 E-value=4.7e-07 Score=83.68 Aligned_cols=146 Identities=19% Similarity=0.151 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHhhCCccccceEEeecCC-ccceEEeeeCCHHHHHHHhCCCCC-ceecCCCCCCCCCcCCCCCCCCCCc
Q 025313 74 QMVDRYAQILTKVLGNEKDAQMCIYHVSW-QSNFGFCCELDDECAQELTGVPGV-LSVQPDENFGSENKDYGGNNLQNSM 151 (255)
Q Consensus 74 ~l~~~F~~~~~~~~G~v~~v~i~~~~~~~-~~g~aFV~f~~~e~a~~a~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (255)
.....|. -+|.|+.|++....... ...++++.+....+++.+....|- +..+............
T Consensus 588 ~~~~~~k-----~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa~~~~a~~~~av~~ad~~~~--------- 653 (881)
T KOG0128|consen 588 IQRRQFK-----GEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPAGGALANRSAAVGLADAEEK--------- 653 (881)
T ss_pred hhHHHhh-----cccccccccCccccccccccchhhhhhccccchhhcccccccccCCccccCCCCCchhh---------
Confidence 3445555 44999999987532323 334999999999999887765432 1111111111000000
Q ss_pred CCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Q 025313 152 VPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGK 231 (255)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~ 231 (255)
.......+.....-.++||+||+..+.+.+|...|..+|.+..+++.-...+++.||+||++|..++++.+|+...+++
T Consensus 654 -~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~ 732 (881)
T KOG0128|consen 654 -EENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSC 732 (881)
T ss_pred -hhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhh
Confidence 0000001111234568999999999999999999999999998888766778999999999999999999999665555
Q ss_pred eeC
Q 025313 232 IIN 234 (255)
Q Consensus 232 ~l~ 234 (255)
.++
T Consensus 733 ~~g 735 (881)
T KOG0128|consen 733 FFG 735 (881)
T ss_pred hhh
Confidence 555
No 139
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.95 E-value=5e-05 Score=67.63 Aligned_cols=77 Identities=27% Similarity=0.457 Sum_probs=64.7
Q ss_pred cceEEEcCCCCCCCH------HHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC-CEEE
Q 025313 166 TKKLFVTGLSFYTSE------KTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIIN-GWMI 238 (255)
Q Consensus 166 ~~~l~V~nLp~~~t~------~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~-g~~l 238 (255)
...|+|.|+|.--.. .-|..+|+++|++....++.+..+| .+||.|++|++..+|+.|++.|||+.|. +++.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 567899999965432 2356899999999999999898655 9999999999999999999999999987 6777
Q ss_pred EEEEe
Q 025313 239 VVDVA 243 (255)
Q Consensus 239 ~V~~a 243 (255)
.|..-
T Consensus 137 ~v~~f 141 (698)
T KOG2314|consen 137 FVRLF 141 (698)
T ss_pred Eeehh
Confidence 77653
No 140
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.93 E-value=6.8e-07 Score=76.60 Aligned_cols=150 Identities=13% Similarity=0.267 Sum_probs=104.9
Q ss_pred ccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhC-CCCCc
Q 025313 49 LFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG-VPGVL 127 (255)
Q Consensus 49 ~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~-~~g~~ 127 (255)
++ +|||.. .++..+|...|... ..+--...-+. .||+||.+.+...|.++++ ++|..
T Consensus 4 ly-ignL~p-----------~~~psdl~svfg~a---k~~~~g~fl~k-------~gyafvd~pdq~wa~kaie~~sgk~ 61 (584)
T KOG2193|consen 4 LY-IGNLSP-----------QVTPSDLESVFGDA---KIPGSGQFLVK-------SGYAFVDCPDQQWANKAIETLSGKV 61 (584)
T ss_pred cc-ccccCC-----------CCChHHHHHHhccc---cCCCCcceeee-------cceeeccCCchhhhhhhHHhhchhh
Confidence 45 899988 89999999999865 11211222222 6999999999999955554 45543
Q ss_pred eecCCCCCCCCCcCCCCCCCCCCcCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEE-ecCCCCC
Q 025313 128 SVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKII-MDKISKR 206 (255)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~-~d~~~g~ 206 (255)
.. .|....... ........+++-|+|+|+...|+-|..+..+||.++.|... .|.++
T Consensus 62 el-------------qGkr~e~~~-------sv~kkqrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et-- 119 (584)
T KOG2193|consen 62 EL-------------QGKRQEVEH-------SVPKKQRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET-- 119 (584)
T ss_pred hh-------------cCceeeccc-------hhhHHHHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH--
Confidence 21 111111000 01112235668999999999999999999999999988543 33322
Q ss_pred cceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 025313 207 SKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 244 (255)
Q Consensus 207 ~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~ 244 (255)
-.--|+|.+.+.+..|+..|+|..+.+..+++.|-.
T Consensus 120 --avvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiP 155 (584)
T KOG2193|consen 120 --AVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIP 155 (584)
T ss_pred --HHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCc
Confidence 133568899999999999999999999999998854
No 141
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.90 E-value=1.2e-05 Score=67.59 Aligned_cols=58 Identities=16% Similarity=0.257 Sum_probs=49.4
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
.....++|+ ||+|.. .+++.+|+++|.|+ |.|.+|++... +++|||+|.+.++|+.|.
T Consensus 224 eD~~I~tLy-Ig~l~d-----------~v~e~dIrdhFyqy-----Geirsi~~~~~-----~~CAFv~ftTR~aAE~Aa 281 (377)
T KOG0153|consen 224 EDTSIKTLY-IGGLND-----------EVLEQDIRDHFYQY-----GEIRSIRILPR-----KGCAFVTFTTREAAEKAA 281 (377)
T ss_pred cccceeEEE-eccccc-----------chhHHHHHHHHhhc-----CCeeeEEeecc-----cccceeeehhhHHHHHHH
Confidence 446667788 999988 89999999999977 99999998744 679999999999995554
No 142
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.90 E-value=9.3e-06 Score=68.19 Aligned_cols=75 Identities=24% Similarity=0.429 Sum_probs=66.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCC--CEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEE
Q 025313 166 TKKLFVTGLSFYTSEKTLRAAFEGFG--ELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVV 240 (255)
Q Consensus 166 ~~~l~V~nLp~~~t~~~L~~~F~~fG--~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V 240 (255)
...+||+||-|++|++||.+...+.| .+.++++...+.+|.++|||+|...+..+.++-++.|-.++|.|+.-.|
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 45799999999999999999998776 4778888999999999999999999999999999999999999875433
No 143
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.87 E-value=2.2e-05 Score=63.33 Aligned_cols=62 Identities=13% Similarity=0.201 Sum_probs=51.1
Q ss_pred cccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEE-eecCCccceEEeeeCCHHHH-HHHhCCCC
Q 025313 48 LLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDECA-QELTGVPG 125 (255)
Q Consensus 48 ~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~-~~~~~~~g~aFV~f~~~e~a-~~a~~~~g 125 (255)
.+| .|+|.. +++++-|...|.++ -+..-.++++ ..+|+++|||||.|.++.++ .++.+|+|
T Consensus 192 RIf-cgdlgN-----------evnd~vl~raf~Kf-----psf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~g 254 (290)
T KOG0226|consen 192 RIF-CGDLGN-----------EVNDDVLARAFKKF-----PSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNG 254 (290)
T ss_pred eee-cccccc-----------cccHHHHHHHHHhc-----cchhhccccccccccccccceeeeecCHHHHHHHHHhhcc
Confidence 467 899999 99999999999955 5555555555 67999999999999999999 66677887
Q ss_pred C
Q 025313 126 V 126 (255)
Q Consensus 126 ~ 126 (255)
.
T Consensus 255 k 255 (290)
T KOG0226|consen 255 K 255 (290)
T ss_pred c
Confidence 4
No 144
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.85 E-value=5.1e-05 Score=47.10 Aligned_cols=52 Identities=21% Similarity=0.446 Sum_probs=42.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Q 025313 167 KKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAAL 225 (255)
Q Consensus 167 ~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al 225 (255)
+.|-|.|.|.... +.+..+|.+||+|..+.+... .-+.+|.|.++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 4678899997765 556669999999999887622 338999999999999985
No 145
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.81 E-value=1.3e-05 Score=64.74 Aligned_cols=73 Identities=19% Similarity=0.293 Sum_probs=62.5
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCC--------CCcceE----EEEEeCCHHHHHHHHHHhCCce
Q 025313 165 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKIS--------KRSKGY----AFIEYTTEEAASAALKEMNGKI 232 (255)
Q Consensus 165 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~--------g~~rg~----aFV~F~~~~~A~~Al~~l~g~~ 232 (255)
..-.||+++||+.++..-|+++|+.||+|-.|.|.+...+ |.++++ |.|+|.+...|......|||..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4568999999999999999999999999999988876555 333222 6899999999999999999999
Q ss_pred eCCEE
Q 025313 233 INGWM 237 (255)
Q Consensus 233 l~g~~ 237 (255)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99975
No 146
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=97.80 E-value=1.4e-05 Score=50.21 Aligned_cols=43 Identities=19% Similarity=0.222 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhC-CCCC
Q 025313 75 MVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG-VPGV 126 (255)
Q Consensus 75 l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~-~~g~ 126 (255)
|.++|+ .||.|.++.+.... +++|||+|.+.++|+.|+. ++|.
T Consensus 1 L~~~f~-----~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~ 44 (56)
T PF13893_consen 1 LYKLFS-----KFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGR 44 (56)
T ss_dssp HHHHHT-----TTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTS
T ss_pred ChHHhC-----CcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCC
Confidence 456677 56999999886332 6999999999999977764 5664
No 147
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.73 E-value=8.4e-05 Score=66.16 Aligned_cols=172 Identities=12% Similarity=0.071 Sum_probs=98.1
Q ss_pred CCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh-
Q 025313 43 QIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT- 121 (255)
Q Consensus 43 ~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~- 121 (255)
...+++|+ |-|||. +|++++|.++|..+ |.|++|+.. -..+|..||+|.|..+|++|+
T Consensus 72 ~~~~~~L~-v~nl~~-----------~Vsn~~L~~~f~~y-----Geir~ir~t----~~~~~~~~v~FyDvR~A~~Alk 130 (549)
T KOG4660|consen 72 DMNQGTLV-VFNLPR-----------SVSNDTLLRIFGAY-----GEIREIRET----PNKRGIVFVEFYDVRDAERALK 130 (549)
T ss_pred cCccceEE-EEecCC-----------cCCHHHHHHHHHhh-----cchhhhhcc----cccCceEEEEEeehHhHHHHHH
Confidence 34555666 778888 89999999999955 999997753 345899999999999995554
Q ss_pred CCCCCceecCC--CCCCCC-CcCCCCC-CC-CCCcCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEE
Q 025313 122 GVPGVLSVQPD--ENFGSE-NKDYGGN-NL-QNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEV 196 (255)
Q Consensus 122 ~~~g~~~~~~~--~~~~~~-~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v 196 (255)
++++....... ...... ....... .. .....+.. ...+...+-..++.- |++..+..-++.++.-+|.+..
T Consensus 131 ~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~p~a--~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~- 206 (549)
T KOG4660|consen 131 ALNRREIAGKRIKRPGGARRAMGLQSGTSFLNHFGSPLA--NSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG- 206 (549)
T ss_pred HHHHHHhhhhhhcCCCcccccchhcccchhhhhccchhh--cCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-
Confidence 45543211000 100000 0000000 00 00000000 001111112234333 8888888777777777887655
Q ss_pred EEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecC
Q 025313 197 KIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKT 245 (255)
Q Consensus 197 ~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~ 245 (255)
+. ++.-.-.-|++|.+..++..++..+ |..+.+.....+++.+
T Consensus 207 ~~-----~~~~~hq~~~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 207 RE-----TPLLNHQRFVEFADNRSYAFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred cc-----ccchhhhhhhhhccccchhhcccCC-ceecCCCCceEEecCC
Confidence 32 2222225678888888886665543 6677777766666655
No 148
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.69 E-value=5.9e-05 Score=66.47 Aligned_cols=59 Identities=15% Similarity=0.202 Sum_probs=49.6
Q ss_pred ccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEee-cCCccceEEeeeCCHHHHHHHhCCC
Q 025313 49 LFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYH-VSWQSNFGFCCELDDECAQELTGVP 124 (255)
Q Consensus 49 ~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~-~~~~~g~aFV~f~~~e~a~~a~~~~ 124 (255)
+| |+|||+ ++++.+|++.|. .||.|+..+|.... .+....||||+|.+.++++.++..+
T Consensus 291 i~-V~nlP~-----------da~~~~l~~~Fk-----~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As 350 (419)
T KOG0116|consen 291 IF-VKNLPP-----------DATPAELEEVFK-----QFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS 350 (419)
T ss_pred eE-eecCCC-----------CCCHHHHHHHHh-----hcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC
Confidence 66 999999 999999999999 55999999988755 3444599999999999997776543
No 149
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.56 E-value=0.00079 Score=47.48 Aligned_cols=78 Identities=22% Similarity=0.314 Sum_probs=52.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCCEEEEE-EEecC------CCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCE-E
Q 025313 166 TKKLFVTGLSFYTSEKTLRAAFEGFGELVEVK-IIMDK------ISKRSKGYAFIEYTTEEAASAALKEMNGKIINGW-M 237 (255)
Q Consensus 166 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~-i~~d~------~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~-~ 237 (255)
..-|.|-|.|+. .-..+.+.|++||.|.+.. +.++. .......+--|+|+++.+|.+|| .-||..++|. .
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCcEE
Confidence 456889999988 5577888999999998774 11110 00112448899999999999999 6699999985 5
Q ss_pred EEEEEecC
Q 025313 238 IVVDVAKT 245 (255)
Q Consensus 238 l~V~~a~~ 245 (255)
+-|.++++
T Consensus 84 vGV~~~~~ 91 (100)
T PF05172_consen 84 VGVKPCDP 91 (100)
T ss_dssp EEEEE-HH
T ss_pred EEEEEcHH
Confidence 66888754
No 150
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.55 E-value=4.4e-05 Score=62.34 Aligned_cols=69 Identities=12% Similarity=0.161 Sum_probs=59.7
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEE-eecCCccceEEeeeCCHHHHHHH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDECAQEL 120 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~-~~~~~~~g~aFV~f~~~e~a~~a 120 (255)
..++.+.++ +||+.+ .+|.+++..+|+-| |.+.-+.|.. +..++++||+||+|.+.+.++.+
T Consensus 97 ~~~d~~sv~-v~nvd~-----------~~t~~~~e~hf~~C-----g~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~a 159 (231)
T KOG4209|consen 97 KEVDAPSVW-VGNVDF-----------LVTLTKIELHFESC-----GGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEA 159 (231)
T ss_pred hccCCceEE-Eecccc-----------ccccchhhheeecc-----CCccceeeeccccCCCcceeEEEecccHhhhHHH
Confidence 567778888 999999 89999999999977 9998888776 44567999999999999999999
Q ss_pred hCCCCCc
Q 025313 121 TGVPGVL 127 (255)
Q Consensus 121 ~~~~g~~ 127 (255)
+.|+|..
T Consensus 160 y~l~gs~ 166 (231)
T KOG4209|consen 160 YKLDGSE 166 (231)
T ss_pred hhcCCcc
Confidence 9998753
No 151
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=97.53 E-value=8.6e-05 Score=68.49 Aligned_cols=59 Identities=12% Similarity=0.208 Sum_probs=49.0
Q ss_pred CCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh-C
Q 025313 44 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT-G 122 (255)
Q Consensus 44 ~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~-~ 122 (255)
.-|++|| ||.++. .+++++|..+|+.+ |.|.+|.+.-. +|+|||.+....+|.+|+ +
T Consensus 419 V~SrTLw-vG~i~k-----------~v~e~dL~~~feef-----GeiqSi~li~~-----R~cAfI~M~~RqdA~kalqk 476 (894)
T KOG0132|consen 419 VCSRTLW-VGGIPK-----------NVTEQDLANLFEEF-----GEIQSIILIPP-----RGCAFIKMVRRQDAEKALQK 476 (894)
T ss_pred Eeeeeee-eccccc-----------hhhHHHHHHHHHhc-----ccceeEeeccC-----CceeEEEEeehhHHHHHHHH
Confidence 4567788 999999 99999999999954 99999987644 999999999999995554 4
Q ss_pred CC
Q 025313 123 VP 124 (255)
Q Consensus 123 ~~ 124 (255)
|.
T Consensus 477 l~ 478 (894)
T KOG0132|consen 477 LS 478 (894)
T ss_pred Hh
Confidence 43
No 152
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.48 E-value=0.00044 Score=57.08 Aligned_cols=65 Identities=20% Similarity=0.333 Sum_probs=53.5
Q ss_pred HHHHHHHHhcCCCEEEEEEEecCCCCCcce-EEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 025313 180 EKTLRAAFEGFGELVEVKIIMDKISKRSKG-YAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 244 (255)
Q Consensus 180 ~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg-~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~ 244 (255)
++++++-.++||.|..|.|..++..-.+.. --||+|+..++|.+|+-.|||..|+||.++..+-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 356788899999999999888764333322 35999999999999999999999999999887743
No 153
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.46 E-value=0.00077 Score=50.47 Aligned_cols=56 Identities=25% Similarity=0.482 Sum_probs=46.1
Q ss_pred HHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCC
Q 025313 182 TLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTT 246 (255)
Q Consensus 182 ~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~~ 246 (255)
+|.+.|..||++.-+++..+ --.|+|.+-++|.+|+ .|+|.+++|+.|+|++..+.
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaal-s~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAAL-SLDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHH-HGCCSEETTEEEEEEE----
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHH-ccCCcEECCEEEEEEeCCcc
Confidence 67788899999998888755 4799999999999999 88999999999999987653
No 154
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.46 E-value=1.5e-05 Score=67.98 Aligned_cols=177 Identities=14% Similarity=0.102 Sum_probs=108.9
Q ss_pred ccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEE--ee--cCCccceEEeeeCCHHHHHHHhCCC
Q 025313 49 LFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI--YH--VSWQSNFGFCCELDDECAQELTGVP 124 (255)
Q Consensus 49 ~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~--~~--~~~~~g~aFV~f~~~e~a~~a~~~~ 124 (255)
++.|.|+.. ..|.+++.-+|... |+|.++++.- +. ..-....|||-|.|..++..|+-|-
T Consensus 9 vIqvanisp-----------sat~dqm~tlFg~l-----GkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLt 72 (479)
T KOG4676|consen 9 VIQVANISP-----------SATKDQMQTLFGNL-----GKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLT 72 (479)
T ss_pred eeeecccCc-----------hhhHHHHHHHHhhc-----cccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhc
Confidence 555899988 89999999999955 9999999763 11 1224569999999999986666552
Q ss_pred CC------ceecCCCCCCC----------CCc------CCCCCCCCC------CcCCCCCCCCC---------CCCCccc
Q 025313 125 GV------LSVQPDENFGS----------ENK------DYGGNNLQN------SMVPSDSSEAS---------PTQIKTK 167 (255)
Q Consensus 125 g~------~~~~~~~~~~~----------~~~------~~~~~~~~~------~~~~~~~~~~~---------~~~~~~~ 167 (255)
.. +-+.+...... ... ...|.-... ...+......+ ....-.+
T Consensus 73 ntvfvdraliv~p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirR 152 (479)
T KOG4676|consen 73 NTVFVDRALIVRPYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRR 152 (479)
T ss_pred cceeeeeeEEEEecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHh
Confidence 21 11111110000 000 000000000 00000000000 0011236
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCC
Q 025313 168 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTT 246 (255)
Q Consensus 168 ~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~~ 246 (255)
+++|.+|+..+...++.+.|..+|+|....+. .|...-+|-++|....+...|+ .++|..+.-+...+..-++.
T Consensus 153 t~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~hal-r~~gre~k~qhsr~ai~kP~ 226 (479)
T KOG4676|consen 153 TREVQSLISAAILPESGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHAL-RSHGRERKRQHSRRAIIKPH 226 (479)
T ss_pred hhhhhcchhhhcchhhhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHH-HhcchhhhhhhhhhhhcCcc
Confidence 89999999999999999999999998877665 3334457889999999999998 66887776444444444443
No 155
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.38 E-value=0.00028 Score=57.71 Aligned_cols=68 Identities=13% Similarity=0.082 Sum_probs=55.5
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHH-HHH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECA-QEL 120 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a-~~a 120 (255)
.+..+..+. |.||++ .|+++||.++|.++ |.++-+-+..+..|++.|.|=|.|...++| .++
T Consensus 79 ~~~~~~~v~-v~NL~~-----------~V~~~Dl~eLF~~~-----~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~av 141 (243)
T KOG0533|consen 79 NETRSTKVN-VSNLPY-----------GVIDADLKELFAEF-----GELKRVAVHYDRAGRSLGTADVSFNRRDDAERAV 141 (243)
T ss_pred cCCCcceee-eecCCc-----------CcchHHHHHHHHHh-----ccceEEeeccCCCCCCCccceeeecchHhHHHHH
Confidence 344455566 888888 89999999999966 888888888899999999999999999888 444
Q ss_pred hCCCCC
Q 025313 121 TGVPGV 126 (255)
Q Consensus 121 ~~~~g~ 126 (255)
..++|+
T Consensus 142 k~~~gv 147 (243)
T KOG0533|consen 142 KKYNGV 147 (243)
T ss_pred HHhcCc
Confidence 555664
No 156
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.32 E-value=0.0017 Score=41.33 Aligned_cols=55 Identities=20% Similarity=0.336 Sum_probs=46.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcC---CCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 025313 166 TKKLFVTGLSFYTSEKTLRAAFEGF---GELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEM 228 (255)
Q Consensus 166 ~~~l~V~nLp~~~t~~~L~~~F~~f---G~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l 228 (255)
..+|+|+|++ .++.++|+.+|..| .....+..+-|. -|-|.|.+.+.|.+||.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 5679999997 47889999999998 235688888775 5999999999999999765
No 157
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.31 E-value=0.00056 Score=47.94 Aligned_cols=65 Identities=11% Similarity=0.125 Sum_probs=47.2
Q ss_pred ccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEE-eecCCccceEEeeeCCHHHHHHHh-CCC
Q 025313 47 TLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDECAQELT-GVP 124 (255)
Q Consensus 47 ~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~-~~~~~~~g~aFV~f~~~e~a~~a~-~~~ 124 (255)
+++. +.|+|. ..|.++|.+.+... ..|..-=+-+.+ ..++.+.|||||.|.+++.|.... .++
T Consensus 2 TTvM-irNIPn-----------~~t~~~L~~~l~~~---~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~ 66 (97)
T PF04059_consen 2 TTVM-IRNIPN-----------KYTQEMLIQILDEH---FKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFN 66 (97)
T ss_pred eeEE-EecCCC-----------CCCHHHHHHHHHHh---ccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHc
Confidence 4566 889999 99999999999865 335443333555 446678899999999999995544 335
Q ss_pred CC
Q 025313 125 GV 126 (255)
Q Consensus 125 g~ 126 (255)
|.
T Consensus 67 g~ 68 (97)
T PF04059_consen 67 GK 68 (97)
T ss_pred CC
Confidence 54
No 158
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.24 E-value=0.00042 Score=59.97 Aligned_cols=70 Identities=21% Similarity=0.293 Sum_probs=57.6
Q ss_pred CCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEec---CCC--CCc--------ceEEEEEeCCHHHHHHHHHH
Q 025313 161 PTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMD---KIS--KRS--------KGYAFIEYTTEEAASAALKE 227 (255)
Q Consensus 161 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d---~~~--g~~--------rg~aFV~F~~~~~A~~Al~~ 227 (255)
.+..+.++|.+-|||.+-.-+.|.++|+.+|.|..|+|... ..+ |.+ +-+|+|+|+..+.|.+|.+.
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 34457899999999999888999999999999999999866 322 222 45699999999999999977
Q ss_pred hCC
Q 025313 228 MNG 230 (255)
Q Consensus 228 l~g 230 (255)
|+.
T Consensus 306 ~~~ 308 (484)
T KOG1855|consen 306 LNP 308 (484)
T ss_pred hch
Confidence 754
No 159
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.11 E-value=0.00022 Score=57.81 Aligned_cols=56 Identities=25% Similarity=0.490 Sum_probs=48.2
Q ss_pred cCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecC
Q 025313 189 GFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKT 245 (255)
Q Consensus 189 ~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~ 245 (255)
+||+|+.+++.... .-.-+|-+||.|...++|++|++.|||..+.|++|...++.-
T Consensus 92 kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 92 KYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred Hhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 89999998765543 345688899999999999999999999999999999988754
No 160
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.03 E-value=0.004 Score=55.34 Aligned_cols=65 Identities=26% Similarity=0.451 Sum_probs=49.4
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecC-CC--CCcce---EEEEEeCCHHHHHHHHHHh
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDK-IS--KRSKG---YAFIEYTTEEAASAALKEM 228 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~-~~--g~~rg---~aFV~F~~~~~A~~Al~~l 228 (255)
..-.++|||++||+.++|++|...|..||.+. |...... .. -.++| |+|+.|+++.+...-+.+.
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 34468999999999999999999999999743 3344211 11 13677 9999999998888777654
No 161
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.96 E-value=0.001 Score=54.01 Aligned_cols=76 Identities=20% Similarity=0.281 Sum_probs=63.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc----eeCCEEEEEEE
Q 025313 167 KKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGK----IINGWMIVVDV 242 (255)
Q Consensus 167 ~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~----~l~g~~l~V~~ 242 (255)
..|||.||...++.+.+.+-|+.||+|....+..|. .+++.+-++|+|...-.|.+|+..+.-. ...+++.-|..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 679999999999999999999999999988777776 7888899999999999999999887322 33455555544
Q ss_pred e
Q 025313 243 A 243 (255)
Q Consensus 243 a 243 (255)
.
T Consensus 111 ~ 111 (275)
T KOG0115|consen 111 M 111 (275)
T ss_pred h
Confidence 3
No 162
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.91 E-value=0.00062 Score=58.88 Aligned_cols=77 Identities=21% Similarity=0.325 Sum_probs=60.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc-eeCCEEEEEEEecC
Q 025313 167 KKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGK-IINGWMIVVDVAKT 245 (255)
Q Consensus 167 ~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~-~l~g~~l~V~~a~~ 245 (255)
.+||++||.+..+..+|+.+|...---.+-.++.. .|||||.+.+..-|.+|++.++|. .+.|+++.+..+.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 46999999999999999999976521112222222 469999999999999999999996 58899999999877
Q ss_pred CCCC
Q 025313 246 TPKY 249 (255)
Q Consensus 246 ~~~~ 249 (255)
+..+
T Consensus 76 kkqr 79 (584)
T KOG2193|consen 76 KKQR 79 (584)
T ss_pred HHHH
Confidence 6543
No 163
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.76 E-value=0.002 Score=55.34 Aligned_cols=77 Identities=9% Similarity=0.222 Sum_probs=63.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCC---CCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 025313 167 KKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKIS---KRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 243 (255)
Q Consensus 167 ~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~---g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a 243 (255)
..|.|.||.+.++.++++.+|...|.|..++|+..... ....-.|||.|.+...+..|- +|.++.+-++.|.|-..
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEec
Confidence 37999999999999999999999999999999874322 234558999999999998886 88999888887766654
Q ss_pred c
Q 025313 244 K 244 (255)
Q Consensus 244 ~ 244 (255)
.
T Consensus 87 ~ 87 (479)
T KOG4676|consen 87 G 87 (479)
T ss_pred C
Confidence 3
No 164
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.74 E-value=0.02 Score=42.52 Aligned_cols=75 Identities=15% Similarity=0.166 Sum_probs=56.5
Q ss_pred CCCccceEEEcCCCCCCC-HHHH---HHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEE
Q 025313 162 TQIKTKKLFVTGLSFYTS-EKTL---RAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWM 237 (255)
Q Consensus 162 ~~~~~~~l~V~nLp~~~t-~~~L---~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~ 237 (255)
...+-.+|.|+=|..++. .+|+ ...++.||+|.+|.+. | +.-|.|.|++..+|-+|+.+++. ..-|..
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm 153 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----G--RQSAVVVFKDITSACKAVSAFQS-RAPGTM 153 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----C--CceEEEEehhhHHHHHHHHhhcC-CCCCce
Confidence 345577888987777763 3444 4556789999999764 3 34799999999999999999876 556777
Q ss_pred EEEEEec
Q 025313 238 IVVDVAK 244 (255)
Q Consensus 238 l~V~~a~ 244 (255)
+.+.|-.
T Consensus 154 ~qCsWqq 160 (166)
T PF15023_consen 154 FQCSWQQ 160 (166)
T ss_pred EEeeccc
Confidence 8888743
No 165
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.44 E-value=0.026 Score=38.00 Aligned_cols=57 Identities=18% Similarity=0.316 Sum_probs=43.3
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 025313 165 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNG 230 (255)
Q Consensus 165 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g 230 (255)
.....||+ .|..+...||.++|+.||.|. |..+-|. -|||...+++.|..|+..+.-
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 35567776 999999999999999999864 5566664 699999999999999987753
No 166
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=96.41 E-value=0.004 Score=57.37 Aligned_cols=68 Identities=16% Similarity=0.273 Sum_probs=54.6
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeec----CCccceEEeeeCCHHHH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHV----SWQSNFGFCCELDDECA 117 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~----~~~~g~aFV~f~~~e~a 117 (255)
..+..+-++ +|||++ .++++.|...|. -||+|.+++|+...+ -+.+-+|||.|.+..+|
T Consensus 170 gDP~TTNly-v~Nlnp-----------sv~E~~ll~tfG-----rfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~ 232 (877)
T KOG0151|consen 170 GDPQTTNLY-VGNLNP-----------SVDENFLLRTFG-----RFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADA 232 (877)
T ss_pred CCCccccee-eecCCc-----------cccHHHHHHHhc-----ccCcccceeeecccchhhhccccccceeeehhhhhH
Confidence 456667677 999999 999999999999 669999999886322 23557999999999999
Q ss_pred HHHh-CCCCC
Q 025313 118 QELT-GVPGV 126 (255)
Q Consensus 118 ~~a~-~~~g~ 126 (255)
++|+ .|+|+
T Consensus 233 era~k~lqg~ 242 (877)
T KOG0151|consen 233 ERALKELQGI 242 (877)
T ss_pred HHHHHHhcce
Confidence 6665 56775
No 167
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.39 E-value=0.0011 Score=55.89 Aligned_cols=80 Identities=19% Similarity=0.377 Sum_probs=63.4
Q ss_pred cceEEEcCCCCCCCHHHH---HHHHhcCCCEEEEEEEecCC----CCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEE
Q 025313 166 TKKLFVTGLSFYTSEKTL---RAAFEGFGELVEVKIIMDKI----SKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMI 238 (255)
Q Consensus 166 ~~~l~V~nLp~~~t~~~L---~~~F~~fG~i~~v~i~~d~~----~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l 238 (255)
..-+||-+|+..+..+.+ .++|.+||.|..+.+..+.. .+.+- -++|+|...++|..||...+|..+.|+.|
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~-s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTC-SVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCC-cccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 455889999988755544 36899999999999888762 12222 27999999999999999999999999998
Q ss_pred EEEEecCC
Q 025313 239 VVDVAKTT 246 (255)
Q Consensus 239 ~V~~a~~~ 246 (255)
+..+...+
T Consensus 156 ka~~gttk 163 (327)
T KOG2068|consen 156 KASLGTTK 163 (327)
T ss_pred HHhhCCCc
Confidence 88776654
No 168
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.37 E-value=0.065 Score=38.53 Aligned_cols=67 Identities=22% Similarity=0.309 Sum_probs=50.2
Q ss_pred ceEEE-cCCCCCCCHHHHHHHHhcC-CCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC
Q 025313 167 KKLFV-TGLSFYTSEKTLRAAFEGF-GELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIING 235 (255)
Q Consensus 167 ~~l~V-~nLp~~~t~~~L~~~F~~f-G~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g 235 (255)
..+.| ...|..++.++|..+.+.+ ..|..++|++|. ..++-.+.+.|.+.++|..-...+||+.++.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 44444 4455555666776666665 457788999884 3477789999999999999999999998874
No 169
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.04 E-value=0.0099 Score=53.81 Aligned_cols=79 Identities=19% Similarity=0.243 Sum_probs=63.5
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHh-cCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee---CCEE
Q 025313 162 TQIKTKKLFVTGLSFYTSEKTLRAAFE-GFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKII---NGWM 237 (255)
Q Consensus 162 ~~~~~~~l~V~nLp~~~t~~~L~~~F~-~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l---~g~~ 237 (255)
....++.|||.||-.-.|.-+|+.++. ..|.|+.. + .|+ -+..|||.|.+.++|.....+|||... +++.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-W-mDk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-W-MDK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH-H-HHH----hhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 445688999999999999999999998 55666655 2 332 345799999999999999999999764 4688
Q ss_pred EEEEEecCC
Q 025313 238 IVVDVAKTT 246 (255)
Q Consensus 238 l~V~~a~~~ 246 (255)
|.+.|....
T Consensus 514 L~adf~~~d 522 (718)
T KOG2416|consen 514 LIADFVRAD 522 (718)
T ss_pred eEeeecchh
Confidence 999887643
No 170
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=95.82 E-value=0.029 Score=34.65 Aligned_cols=52 Identities=13% Similarity=0.192 Sum_probs=37.8
Q ss_pred ccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh
Q 025313 57 HWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 57 ~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
.|+.|..+++. ..+.+..+|.++ |.|.++.+. ....+.+|.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~---~~~~vl~~F~~f-----GeI~~~~~~-----~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPD---LAEEVLEHFASF-----GEIVDIYVP-----ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECch---HHHHHHHHHHhc-----CCEEEEEcC-----CCCcEEEEEECCHHHHHhhC
Confidence 35666666653 446777788855 999876654 44679999999999998764
No 171
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=95.82 E-value=0.018 Score=52.04 Aligned_cols=58 Identities=9% Similarity=0.095 Sum_probs=46.1
Q ss_pred ccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHHHHhC
Q 025313 49 LFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELTG 122 (255)
Q Consensus 49 ~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a~~ 122 (255)
-|||.+|+. .+--.+|+.+|.++ |+|.-++++.. .+...+.||||++.+.++|-+.+.
T Consensus 407 NlWVSGLSs-----------tTRAtDLKnlFSKy-----GKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~ 465 (940)
T KOG4661|consen 407 NLWVSGLSS-----------TTRATDLKNLFSKY-----GKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIE 465 (940)
T ss_pred ceeeecccc-----------chhhhHHHHHHHHh-----cceeceeeeecCCCCCcceeEEEEecchHHHHHHHH
Confidence 444888888 67788999999966 99999998763 344467899999999999966553
No 172
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.64 E-value=0.019 Score=45.00 Aligned_cols=80 Identities=15% Similarity=0.157 Sum_probs=51.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhc-CCCE---EEEEEEecCC-CC-CcceEEEEEeCCHHHHHHHHHHhCCceeCC----
Q 025313 166 TKKLFVTGLSFYTSEKTLRAAFEG-FGEL---VEVKIIMDKI-SK-RSKGYAFIEYTTEEAASAALKEMNGKIING---- 235 (255)
Q Consensus 166 ~~~l~V~nLp~~~t~~~L~~~F~~-fG~i---~~v~i~~d~~-~g-~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g---- 235 (255)
..+|-|++||+.+|++++.+.++. ++.- ..+.-..... .+ ..-.-|||.|.+.+++..-...++|+.+.+
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~ 86 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGN 86 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCC
Confidence 568999999999999998887776 6655 3333112211 11 123458999999999999999999988742
Q ss_pred -EEEEEEEecC
Q 025313 236 -WMIVVDVAKT 245 (255)
Q Consensus 236 -~~l~V~~a~~ 245 (255)
.+..|.+|.-
T Consensus 87 ~~~~~VE~Apy 97 (176)
T PF03467_consen 87 EYPAVVEFAPY 97 (176)
T ss_dssp EEEEEEEE-SS
T ss_pred CcceeEEEcch
Confidence 3567777754
No 173
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.61 E-value=0.028 Score=50.76 Aligned_cols=60 Identities=13% Similarity=0.116 Sum_probs=44.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHH-HHhCCCCCc
Q 025313 67 VGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQ-ELTGVPGVL 127 (255)
Q Consensus 67 ~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~-~a~~~~g~~ 127 (255)
++...-+.|+....+.|++. |++....+..+..|..+||.|++|.+..+|+ ++..+||..
T Consensus 69 V~~~rl~klk~vl~kvfsk~-gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ 129 (698)
T KOG2314|consen 69 VGPARLEKLKKVLTKVFSKA-GKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKR 129 (698)
T ss_pred cChhHHHHHHHHHHHHHHhh-ccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccce
Confidence 34445556666555555544 8888888888888889999999999999995 455668753
No 174
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.33 E-value=0.015 Score=51.23 Aligned_cols=75 Identities=19% Similarity=0.270 Sum_probs=61.2
Q ss_pred ccceEEEcCCCCCC-CHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 025313 165 KTKKLFVTGLSFYT-SEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 243 (255)
Q Consensus 165 ~~~~l~V~nLp~~~-t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a 243 (255)
..+.|-+.-.|+.+ +-++|...|.+||.|..|.+-.. ---|.|+|.+..+|-.|. ..++..|+||.|+|.|-
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWH 443 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchh-ccccceecCceeEEEEe
Confidence 34556666677766 56899999999999999977543 125999999999998887 77999999999999998
Q ss_pred cCC
Q 025313 244 KTT 246 (255)
Q Consensus 244 ~~~ 246 (255)
.+.
T Consensus 444 nps 446 (526)
T KOG2135|consen 444 NPS 446 (526)
T ss_pred cCC
Confidence 764
No 175
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.22 E-value=0.0048 Score=58.28 Aligned_cols=79 Identities=25% Similarity=0.365 Sum_probs=65.5
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 025313 164 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 243 (255)
Q Consensus 164 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a 243 (255)
..+.+||++||+..+++.+|+..|..+|.|..|.|-+-+ -+.---||||.|.+.+.+..|...+.+..|..-.+++.+.
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 457899999999999999999999999999999887664 2333448999999999999999999998887545454444
No 176
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=95.08 E-value=0.013 Score=51.13 Aligned_cols=66 Identities=8% Similarity=0.112 Sum_probs=47.7
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe------ecCC--------ccceE
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY------HVSW--------QSNFG 107 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~------~~~~--------~~g~a 107 (255)
+...+++++ +.|||. +-.-|.|.++|. .+|.|+.|+|+.. ..+. .+-+|
T Consensus 227 eel~srtiv-aenLP~-----------Dh~~enl~kiFg-----~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~A 289 (484)
T KOG1855|consen 227 EELPSRTIV-AENLPL-----------DHSYENLSKIFG-----TVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECA 289 (484)
T ss_pred cccccceEE-EecCCc-----------chHHHHHHHHhh-----cccceeeeeecCCCCCCcccccCCccchhhhhhhhh
Confidence 334455555 566665 666689999999 4499999998854 1122 24589
Q ss_pred EeeeCCHHHHHHHhCCC
Q 025313 108 FCCELDDECAQELTGVP 124 (255)
Q Consensus 108 FV~f~~~e~a~~a~~~~ 124 (255)
+|+|...+.|.+|.+++
T Consensus 290 lvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 290 LVEYEEVEAARKARELL 306 (484)
T ss_pred hhhhhhhHHHHHHHHhh
Confidence 99999999998888775
No 177
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=95.03 E-value=0.21 Score=33.11 Aligned_cols=67 Identities=25% Similarity=0.398 Sum_probs=40.1
Q ss_pred eEEEc-CCCCCCCHHHHHHHHhcCCC-----EEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 025313 168 KLFVT-GLSFYTSEKTLRAAFEGFGE-----LVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 241 (255)
Q Consensus 168 ~l~V~-nLp~~~t~~~L~~~F~~fG~-----i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~ 241 (255)
++||. |--..++..+|..++..-+. |-.++|..+ |+||+-... .|+.++..|++..+.|++|+|+
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEE
Confidence 34552 33446788888888876643 567777644 899998764 8899999999999999999998
Q ss_pred Ee
Q 025313 242 VA 243 (255)
Q Consensus 242 ~a 243 (255)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 75
No 178
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.00 E-value=0.11 Score=41.03 Aligned_cols=62 Identities=18% Similarity=0.205 Sum_probs=45.9
Q ss_pred CHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC--CceeCCEEEEEEEecCC
Q 025313 179 SEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMN--GKIINGWMIVVDVAKTT 246 (255)
Q Consensus 179 t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~--g~~l~g~~l~V~~a~~~ 246 (255)
..+.|+++|..++.+.....++. -+-..|.|.+.++|..|...|+ +..+.|..+++.++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 34789999999999888777644 2358999999999999999999 99999999999998644
No 179
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=94.78 E-value=0.05 Score=36.76 Aligned_cols=54 Identities=11% Similarity=0.090 Sum_probs=37.8
Q ss_pred CCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhC-CCC
Q 025313 52 LGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG-VPG 125 (255)
Q Consensus 52 ~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~-~~g 125 (255)
|-|||. +.+...|.....|..+...|+|.+| . .+.|.|.|.+.+.|+.|++ |+|
T Consensus 7 V~NLP~-----------~~d~~~I~~RL~qLsdNCGGkVl~v--~-------~~tAilrF~~~~~A~RA~KRmeg 61 (90)
T PF11608_consen 7 VSNLPT-----------NKDPSSIKNRLRQLSDNCGGKVLSV--S-------GGTAILRFPNQEFAERAQKRMEG 61 (90)
T ss_dssp EES--T-----------TS-HHHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT
T ss_pred EecCCC-----------CCCHHHHHHHHHHHhhccCCEEEEE--e-------CCEEEEEeCCHHHHHHHHHhhcc
Confidence 777777 7889999999999988898998654 2 6899999999999966653 444
No 180
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.65 E-value=0.16 Score=44.81 Aligned_cols=68 Identities=19% Similarity=0.372 Sum_probs=59.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcC-CCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC
Q 025313 166 TKKLFVTGLSFYTSEKTLRAAFEGF-GELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIING 235 (255)
Q Consensus 166 ~~~l~V~nLp~~~t~~~L~~~F~~f-G~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g 235 (255)
...|+|=.+|-.++.-||..|...| -.|..+++++|. -..+-..+|.|.+.++|..-.+.+||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 7889999999999999999999877 458899999964 3456678999999999999999999998874
No 181
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.33 E-value=0.034 Score=52.47 Aligned_cols=74 Identities=23% Similarity=0.318 Sum_probs=62.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee--CCEEEEEEEecC
Q 025313 168 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKII--NGWMIVVDVAKT 245 (255)
Q Consensus 168 ~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l--~g~~l~V~~a~~ 245 (255)
+.++.|.+-..+...|..+|.+||.|.+...+++- ..|.|+|.+.+.|..|+.+|+|+++ .|-+.+|.+|+.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 45555666677788899999999999999988774 2799999999999999999999875 488899999986
Q ss_pred CC
Q 025313 246 TP 247 (255)
Q Consensus 246 ~~ 247 (255)
-+
T Consensus 374 ~~ 375 (1007)
T KOG4574|consen 374 LP 375 (1007)
T ss_pred cc
Confidence 54
No 182
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.94 E-value=0.12 Score=46.68 Aligned_cols=70 Identities=16% Similarity=0.280 Sum_probs=56.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhc--CCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC--ceeCCEEEEEE
Q 025313 166 TKKLFVTGLSFYTSEKTLRAAFEG--FGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNG--KIINGWMIVVD 241 (255)
Q Consensus 166 ~~~l~V~nLp~~~t~~~L~~~F~~--fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g--~~l~g~~l~V~ 241 (255)
-+.+.++-||..+..|+++.+|+. +..+.+|.+.... -=||+|++..+|+.|.+.|.- ++|.|++|...
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 456778999999999999999974 7788888876553 259999999999999998844 56788877555
Q ss_pred E
Q 025313 242 V 242 (255)
Q Consensus 242 ~ 242 (255)
.
T Consensus 248 I 248 (684)
T KOG2591|consen 248 I 248 (684)
T ss_pred h
Confidence 4
No 183
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=93.93 E-value=0.043 Score=46.72 Aligned_cols=66 Identities=11% Similarity=0.089 Sum_probs=48.4
Q ss_pred CCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEE-eecCCccceEEeeeCCHHHHHHHhC
Q 025313 44 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDECAQELTG 122 (255)
Q Consensus 44 ~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~-~~~~~~~g~aFV~f~~~e~a~~a~~ 122 (255)
-+.+....||||-| -+|++||.+..... -...+.+++..- +..|++||||.|...+..++++.++
T Consensus 77 ~Grk~~~YvGNL~W-----------~TTD~DL~~A~~S~---G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~Me 142 (498)
T KOG4849|consen 77 EGRKYCCYVGNLLW-----------YTTDADLLKALQST---GLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTME 142 (498)
T ss_pred cCceEEEEecceeE-----------EeccHHHHHHHHhh---hHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHH
Confidence 44444455999999 69999999877755 222556666554 6689999999999998888866655
Q ss_pred C
Q 025313 123 V 123 (255)
Q Consensus 123 ~ 123 (255)
+
T Consensus 143 i 143 (498)
T KOG4849|consen 143 I 143 (498)
T ss_pred h
Confidence 4
No 184
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=93.46 E-value=0.17 Score=43.25 Aligned_cols=63 Identities=13% Similarity=0.023 Sum_probs=48.1
Q ss_pred CCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccc------eE--E-eecCCccceEEeeeCCH
Q 025313 44 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQ------MC--I-YHVSWQSNFGFCCELDD 114 (255)
Q Consensus 44 ~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~------i~--~-~~~~~~~g~aFV~f~~~ 114 (255)
+...++| |-.++. .+++.+|.++|.+| |.|+-=+ |. + ..|+..||-|.|.|.|+
T Consensus 64 s~~~ti~-v~g~~d-----------~~~~~~~~~~f~qc-----g~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~ 126 (351)
T KOG1995|consen 64 SDNETIF-VWGCPD-----------SVCENDNADFFLQC-----GVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDP 126 (351)
T ss_pred cccccce-eeccCc-----------cchHHHHHHHHhhc-----ceeccCCCCCCcchhccccccccCcCCceeeeecCh
Confidence 3444556 777777 89999999999988 8773211 22 2 56889999999999999
Q ss_pred HHHHHHhCC
Q 025313 115 ECAQELTGV 123 (255)
Q Consensus 115 e~a~~a~~~ 123 (255)
.+|++|+..
T Consensus 127 ~~akaai~~ 135 (351)
T KOG1995|consen 127 PAAKAAIEW 135 (351)
T ss_pred hhhhhhhhh
Confidence 999888753
No 185
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.39 E-value=0.64 Score=30.06 Aligned_cols=55 Identities=9% Similarity=0.235 Sum_probs=43.5
Q ss_pred CCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEE
Q 025313 177 YTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVV 240 (255)
Q Consensus 177 ~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V 240 (255)
.++-++++.-+..|+- .+|..|+ +| =||.|.+..+|+++....+|..+.+-++.+
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~-tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDR-TG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecC-CE-----EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 3567899999999974 3444554 32 499999999999999999999988877654
No 186
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=92.87 E-value=0.044 Score=39.13 Aligned_cols=44 Identities=14% Similarity=0.203 Sum_probs=25.5
Q ss_pred CCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhC
Q 025313 69 VVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG 122 (255)
Q Consensus 69 ~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~ 122 (255)
.++.++|++.|.+ ||.|.-|.+. ....-|+|.|.++++|++|++
T Consensus 12 ~~~re~iK~~f~~-----~g~V~yVD~~-----~G~~~g~VRf~~~~~A~~a~~ 55 (105)
T PF08777_consen 12 PTSREDIKEAFSQ-----FGEVAYVDFS-----RGDTEGYVRFKTPEAAQKALE 55 (105)
T ss_dssp S--HHHHHHHT-S-----S--EEEEE-------TT-SEEEEEESS---HHHHHH
T ss_pred CcCHHHHHHHHHh-----cCCcceEEec-----CCCCEEEEEECCcchHHHHHH
Confidence 6889999999994 4877655554 223489999999999977764
No 187
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=92.22 E-value=0.057 Score=37.03 Aligned_cols=25 Identities=24% Similarity=0.488 Sum_probs=20.9
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHh
Q 025313 164 IKTKKLFVTGLSFYTSEKTLRAAFE 188 (255)
Q Consensus 164 ~~~~~l~V~nLp~~~t~~~L~~~F~ 188 (255)
...++|-|+|||..+++++|++..+
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheeeEE
Confidence 3478899999999999999987553
No 188
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.13 E-value=0.92 Score=41.46 Aligned_cols=80 Identities=25% Similarity=0.338 Sum_probs=63.1
Q ss_pred CCccceEEEcCCCCC-CCHHHHHHHHhcC----CCEEEEEEEecC----------CCCC---------------------
Q 025313 163 QIKTKKLFVTGLSFY-TSEKTLRAAFEGF----GELVEVKIIMDK----------ISKR--------------------- 206 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~-~t~~~L~~~F~~f----G~i~~v~i~~d~----------~~g~--------------------- 206 (255)
...+++|-|-|++|. +...+|..+|.+| |.|.+|.|.... ..|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 456889999999997 5889999999988 689999987432 1122
Q ss_pred ----------------cceEEEEEeCCHHHHHHHHHHhCCceeCC--EEEEEEE
Q 025313 207 ----------------SKGYAFIEYTTEEAASAALKEMNGKIING--WMIVVDV 242 (255)
Q Consensus 207 ----------------~rg~aFV~F~~~~~A~~Al~~l~g~~l~g--~~l~V~~ 242 (255)
---||.|+|.+.+.|.+....++|..+.. ..|-+.|
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 13479999999999999999999999974 4555554
No 189
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=92.06 E-value=0.078 Score=44.87 Aligned_cols=81 Identities=22% Similarity=0.145 Sum_probs=66.5
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 025313 165 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 244 (255)
Q Consensus 165 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~ 244 (255)
...++|++++.+.+.+.+...++..+|......+........++|++++.|...+.+..|+.......+.++.+...+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 46789999999999999899999999988888777766688999999999999999999995443356666666665554
Q ss_pred C
Q 025313 245 T 245 (255)
Q Consensus 245 ~ 245 (255)
.
T Consensus 167 ~ 167 (285)
T KOG4210|consen 167 R 167 (285)
T ss_pred c
Confidence 3
No 190
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.74 E-value=0.96 Score=38.04 Aligned_cols=70 Identities=26% Similarity=0.301 Sum_probs=52.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEE-EEEEEec
Q 025313 167 KKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWM-IVVDVAK 244 (255)
Q Consensus 167 ~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~-l~V~~a~ 244 (255)
.=|-|-|+|+.-. .-|..+|++||.|++.... ..-.+=+|.|.++-+|.+|| .-||+.|+|-. |-|..+.
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KAL-skng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKAL-SKNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhh-hhcCeeeccceEEeeeecC
Confidence 3456668877643 5577899999999887543 22348999999999999999 55999998754 5666544
No 191
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=91.28 E-value=0.34 Score=44.78 Aligned_cols=72 Identities=15% Similarity=0.187 Sum_probs=62.6
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 242 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~ 242 (255)
..+.-++||+|+...+..+-++.+...+|.|-+++... |||.+|..+..+..|+..++-..++|..+.+..
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 34567899999999999999999999999988886542 899999999999999999999999998877665
Q ss_pred e
Q 025313 243 A 243 (255)
Q Consensus 243 a 243 (255)
.
T Consensus 108 d 108 (668)
T KOG2253|consen 108 D 108 (668)
T ss_pred h
Confidence 3
No 192
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=89.66 E-value=0.74 Score=32.47 Aligned_cols=62 Identities=13% Similarity=0.161 Sum_probs=40.1
Q ss_pred cEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccc-eEEe-------ecCCccceEEeeeCCHHHHHHHhCCCCCc
Q 025313 58 WLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQ-MCIY-------HVSWQSNFGFCCELDDECAQELTGVPGVL 127 (255)
Q Consensus 58 ~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~-i~~~-------~~~~~~g~aFV~f~~~e~a~~a~~~~g~~ 127 (255)
|+.|--+|+ .....+.++|.++ |.|.+.. +... +.......-.|.|.++.+|++|+..||.+
T Consensus 8 wVtVFGfp~---~~~~~Vl~~F~~~-----G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i 77 (100)
T PF05172_consen 8 WVTVFGFPP---SASNQVLRHFSSF-----GTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTI 77 (100)
T ss_dssp EEEEE---G---GGHHHHHHHHHCC-----S-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEE
T ss_pred EEEEEccCH---HHHHHHHHHHHhc-----ceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeE
Confidence 555555554 3666888899955 9996664 1111 22334568899999999999999999864
No 193
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=82.67 E-value=1 Score=36.98 Aligned_cols=56 Identities=7% Similarity=-0.035 Sum_probs=48.5
Q ss_pred CCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhC
Q 025313 51 PLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG 122 (255)
Q Consensus 51 ~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~ 122 (255)
+|.||+. -++-+.+.+.|. .||.|....++.+..+++.+-++|.|...-.|.+|+.
T Consensus 35 ~V~nl~~-----------~~sndll~~~f~-----~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~r 90 (275)
T KOG0115|consen 35 YVVNLMQ-----------GASNDLLEQAFR-----RFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAAR 90 (275)
T ss_pred EEEecch-----------hhhhHHHHHhhh-----hcCccchheeeecccccccccchhhhhcchhHHHHHH
Confidence 3777777 799999999999 6699999999889999999999999999988865543
No 194
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=78.05 E-value=0.75 Score=38.21 Aligned_cols=81 Identities=22% Similarity=0.475 Sum_probs=51.6
Q ss_pred cceEEEcCCCCC------------CCHHHHHHHHhcCCCEEEEEEEec-----CCCCCc-----ceEE---------EEE
Q 025313 166 TKKLFVTGLSFY------------TSEKTLRAAFEGFGELVEVKIIMD-----KISKRS-----KGYA---------FIE 214 (255)
Q Consensus 166 ~~~l~V~nLp~~------------~t~~~L~~~F~~fG~i~~v~i~~d-----~~~g~~-----rg~a---------FV~ 214 (255)
+.+||+.+||-. -+++-|+..|..||.|..|.|+.- .-+|+. .||+ ||+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 567888888753 356789999999999999887622 123443 3333 455
Q ss_pred eCCHHHHHHHHHHhCCceeC----C----EEEEEEEecCC
Q 025313 215 YTTEEAASAALKEMNGKIIN----G----WMIVVDVAKTT 246 (255)
Q Consensus 215 F~~~~~A~~Al~~l~g~~l~----g----~~l~V~~a~~~ 246 (255)
|.....-..|+..|.|..+. | -.++|.+..++
T Consensus 229 fmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsr 268 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSR 268 (445)
T ss_pred HHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhh
Confidence 55555566677777775542 2 24666666543
No 195
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=77.85 E-value=1.6 Score=35.86 Aligned_cols=43 Identities=12% Similarity=0.054 Sum_probs=33.8
Q ss_pred HHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhC-CCC
Q 025313 83 LTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG-VPG 125 (255)
Q Consensus 83 ~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~-~~g 125 (255)
+.+.+|.|+++.+...-.-.-.|=.+|.|..+++|++|+. |||
T Consensus 89 ~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnn 132 (260)
T KOG2202|consen 89 LEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNN 132 (260)
T ss_pred HHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcC
Confidence 4457799999988766556678999999999999977664 454
No 196
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=75.54 E-value=3.2 Score=38.22 Aligned_cols=64 Identities=14% Similarity=0.031 Sum_probs=44.9
Q ss_pred CCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHH-HHHhC
Q 025313 44 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECA-QELTG 122 (255)
Q Consensus 44 ~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a-~~a~~ 122 (255)
..|..|. |.||=. -.|..+|+++.... .|.|.+..|- +-+.-|||.|.+.++| ....+
T Consensus 442 ~~Snvlh-I~nLvR-----------PFTlgQLkelL~rt----gg~Vee~WmD-----kIKShCyV~yss~eEA~atr~A 500 (718)
T KOG2416|consen 442 EPSNVLH-IDNLVR-----------PFTLGQLKELLGRT----GGNVEEFWMD-----KIKSHCYVSYSSVEEAAATREA 500 (718)
T ss_pred CccceEe-eecccc-----------cchHHHHHHHHhhc----cCchHHHHHH-----HhhcceeEecccHHHHHHHHHH
Confidence 3445555 888876 56999999988833 3677666321 2267899999999999 55566
Q ss_pred CCCCce
Q 025313 123 VPGVLS 128 (255)
Q Consensus 123 ~~g~~~ 128 (255)
|+|+.+
T Consensus 501 lhnV~W 506 (718)
T KOG2416|consen 501 LHNVQW 506 (718)
T ss_pred Hhcccc
Confidence 777654
No 197
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=74.29 E-value=2.8 Score=35.89 Aligned_cols=46 Identities=15% Similarity=0.147 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhCCccccceEEeec--CCccceE--EeeeCCHHHHHH-HhCCCCC
Q 025313 76 VDRYAQILTKVLGNEKDAQMCIYHV--SWQSNFG--FCCELDDECAQE-LTGVPGV 126 (255)
Q Consensus 76 ~~~F~~~~~~~~G~v~~v~i~~~~~--~~~~g~a--FV~f~~~e~a~~-a~~~~g~ 126 (255)
.++|.|+ |+|..|.+-++.. ....+-+ ||+|.+.|+|.. +.+.+|.
T Consensus 138 ~eyFGQy-----GkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs 188 (480)
T COG5175 138 HEYFGQY-----GKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGS 188 (480)
T ss_pred hhhhhhc-----cceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccc
Confidence 4688876 9998888755331 1222323 899999999944 4445553
No 198
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=73.97 E-value=34 Score=28.83 Aligned_cols=47 Identities=15% Similarity=0.165 Sum_probs=36.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCCE-EEEEEEecCCCCCcceEEEEEeCCH
Q 025313 166 TKKLFVTGLSFYTSEKTLRAAFEGFGEL-VEVKIIMDKISKRSKGYAFIEYTTE 218 (255)
Q Consensus 166 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i-~~v~i~~d~~~g~~rg~aFV~F~~~ 218 (255)
..-||++|||.++.-.||+.-+.+-+.+ .++.+. | +.|-||..|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk-----g-~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK-----G-HFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeee-----c-CCcceeEecCCc
Confidence 4569999999999999999999887653 344442 2 467899999874
No 199
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=72.99 E-value=2.9 Score=31.53 Aligned_cols=49 Identities=12% Similarity=0.164 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhCCCCC
Q 025313 70 VTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGVPGV 126 (255)
Q Consensus 70 vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~~~g~ 126 (255)
...++|..-+-+.|+. +|.+.-||.. .+--+|+|.+-++|-+|+.++|+
T Consensus 44 ~Fdd~l~~~ll~~~~~-~GevvLvRfv-------~~~mwVTF~dg~sALaals~dg~ 92 (146)
T PF08952_consen 44 SFDDNLMDELLQKFAQ-YGEVVLVRFV-------GDTMWVTFRDGQSALAALSLDGI 92 (146)
T ss_dssp S--HHHHHHHHHHHHC-CS-ECEEEEE-------TTCEEEEESSCHHHHHHHHGCCS
T ss_pred cCCHHHHHHHHHHHHh-CCceEEEEEe-------CCeEEEEECccHHHHHHHccCCc
Confidence 4555555444444333 4877666655 56789999999999999999885
No 200
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=71.72 E-value=3.8 Score=31.96 Aligned_cols=75 Identities=13% Similarity=0.134 Sum_probs=53.9
Q ss_pred cceEEEcCCCCCCCH-----HHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCE-EEE
Q 025313 166 TKKLFVTGLSFYTSE-----KTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGW-MIV 239 (255)
Q Consensus 166 ~~~l~V~nLp~~~t~-----~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~-~l~ 239 (255)
..++.+.+++..+-. .....+|.+|.+.....+++. .+.--|.|.+++.|..|...+++..|.|+ .++
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 445667777765522 234567777776555555532 34567789999999999999999999988 888
Q ss_pred EEEecCC
Q 025313 240 VDVAKTT 246 (255)
Q Consensus 240 V~~a~~~ 246 (255)
.-++.+.
T Consensus 84 ~yfaQ~~ 90 (193)
T KOG4019|consen 84 LYFAQPG 90 (193)
T ss_pred EEEccCC
Confidence 8887754
No 201
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=68.94 E-value=11 Score=28.28 Aligned_cols=44 Identities=11% Similarity=0.151 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh
Q 025313 70 VTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 70 vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
-..+|++....+. ..||+|.+|..+ .+-.|.|.|.|..+|-+|.
T Consensus 99 ~~~edl~sV~~~L--s~fGpI~SVT~c------GrqsavVvF~d~~SAC~Av 142 (166)
T PF15023_consen 99 QPTEDLKSVIQRL--SVFGPIQSVTLC------GRQSAVVVFKDITSACKAV 142 (166)
T ss_pred ChHHHHHHHHHHH--HhcCCcceeeec------CCceEEEEehhhHHHHHHH
Confidence 3456777766655 588999888775 4568999999999994443
No 202
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.78 E-value=16 Score=32.23 Aligned_cols=56 Identities=20% Similarity=0.191 Sum_probs=47.2
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCC-EEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 025313 165 KTKKLFVTGLSFYTSEKTLRAAFEGFGE-LVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 227 (255)
Q Consensus 165 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~-i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~ 227 (255)
-.+.|-|.++|...-.+||...|..|+. --+|+++-|. .||-.|.+...|..||..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 3578999999999988999999999965 4577777765 799999999999999943
No 203
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.24 E-value=0.81 Score=40.41 Aligned_cols=79 Identities=5% Similarity=-0.163 Sum_probs=64.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCC
Q 025313 167 KKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTT 246 (255)
Q Consensus 167 ~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~~ 246 (255)
.+.++..+|-..+++++..+|..||.|.-+.+-+....|...-.+|+.-.. .+|..++..+.-..+.|..+++.++...
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~s 82 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPSS 82 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCchh
Confidence 345678889999999999999999999988888777777788889998765 4677788777777788888888888754
No 204
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=65.84 E-value=19 Score=22.89 Aligned_cols=19 Identities=21% Similarity=0.420 Sum_probs=15.5
Q ss_pred HHHHHHHhcCCCEEEEEEE
Q 025313 181 KTLRAAFEGFGELVEVKII 199 (255)
Q Consensus 181 ~~L~~~F~~fG~i~~v~i~ 199 (255)
++|+++|+..|+|.-+.+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 6799999999998766544
No 205
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=65.28 E-value=9 Score=27.78 Aligned_cols=55 Identities=20% Similarity=0.291 Sum_probs=29.0
Q ss_pred eEEEcCCCCC---------CCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCC-HHHHHHHH
Q 025313 168 KLFVTGLSFY---------TSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTT-EEAASAAL 225 (255)
Q Consensus 168 ~l~V~nLp~~---------~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~-~~~A~~Al 225 (255)
++.|-|++.. .+.++|++.|+.|..++ ++.+.++ . -+.|+++|+|.+ -.--..|+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~-~-gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK-Q-GHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET-T-EEEEEEEEE--SSHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC-C-CCcEEEEEEECCChHHHHHHH
Confidence 4556666443 35578999999998875 5555554 2 478999999985 33334444
No 206
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=61.28 E-value=21 Score=26.64 Aligned_cols=110 Identities=15% Similarity=0.080 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhCCCCCceecCCCCCCCCCcCCCCCCCC-
Q 025313 70 VTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGVPGVLSVQPDENFGSENKDYGGNNLQ- 148 (255)
Q Consensus 70 vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~- 148 (255)
.+-..|.+...+ ..+....+.+.. -..++..+.|.++++++.+++...- .+.+..+.
T Consensus 29 ~~~~~l~~~l~~----~W~~~~~~~i~~----l~~~~fl~~F~~~~d~~~vl~~~p~--------------~~~~~~~~l 86 (153)
T PF14111_consen 29 ISLSALEQELAK----IWKLKGGVKIRD----LGDNLFLFQFESEEDRQRVLKGGPW--------------NFNGHFLIL 86 (153)
T ss_pred CCHHHHHHHHHH----HhCCCCcEEEEE----eCCCeEEEEEEeccceeEEEecccc--------------cccccchhh
Confidence 556666655553 335544555442 1368999999999999887753211 01111111
Q ss_pred CCcCCCCCCCCCCCCCccceEEEcCCCCC-CCHHHHHHHHhcCCCEEEEEEEec
Q 025313 149 NSMVPSDSSEASPTQIKTKKLFVTGLSFY-TSEKTLRAAFEGFGELVEVKIIMD 201 (255)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~-~t~~~L~~~F~~fG~i~~v~i~~d 201 (255)
..+.+..............=|.|.|||.. .+++-++.+.+.+|.+..+.....
T Consensus 87 ~~W~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 87 QRWSPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred hhhcccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 11111111000111112333666799987 488889999999999998876543
No 207
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=59.08 E-value=20 Score=30.27 Aligned_cols=49 Identities=10% Similarity=0.009 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhhCCccccceEEeecCC--ccceEEeeeCCHHHH-HHHhCCCCCc
Q 025313 74 QMVDRYAQILTKVLGNEKDAQMCIYHVSW--QSNFGFCCELDDECA-QELTGVPGVL 127 (255)
Q Consensus 74 ~l~~~F~~~~~~~~G~v~~v~i~~~~~~~--~~g~aFV~f~~~e~a-~~a~~~~g~~ 127 (255)
++.+..++| |+|..|.|.....-. -.---||+|...+.| +++..|||-.
T Consensus 302 e~keEceKy-----g~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRy 353 (378)
T KOG1996|consen 302 ETKEECEKY-----GKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRY 353 (378)
T ss_pred HHHHHHHhh-----cceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCce
Confidence 444455544 999988876542211 123579999999999 7778888853
No 208
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=58.68 E-value=6.4 Score=36.79 Aligned_cols=55 Identities=18% Similarity=0.175 Sum_probs=38.0
Q ss_pred CCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhC
Q 025313 43 QIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG 122 (255)
Q Consensus 43 ~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~ 122 (255)
.+..-++| |||+.. .+..+-+......+ |.|.+.... + |||+.|.....+..++.
T Consensus 37 ~~~~~~vf-v~~~~~-----------~~s~~~~~~il~~~-----g~v~s~kr~-------~-fgf~~f~~~~~~~ra~r 91 (668)
T KOG2253|consen 37 LPPRDTVF-VGNISY-----------LVSQEFWKSILAKS-----GFVPSWKRD-------K-FGFCEFLKHIGDLRASR 91 (668)
T ss_pred CCCCceeE-ecchhh-----------hhhHHHHHHHHhhC-----Ccchhhhhh-------h-hcccchhhHHHHHHHHH
Confidence 34444566 777777 67776666666655 998766543 2 99999999998855544
No 209
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=57.86 E-value=42 Score=29.78 Aligned_cols=80 Identities=24% Similarity=0.317 Sum_probs=57.7
Q ss_pred CCccceEEEcCCCCC-CCHHHHHHHHhcC----CCEEEEEEEecC----------CCC----------------------
Q 025313 163 QIKTKKLFVTGLSFY-TSEKTLRAAFEGF----GELVEVKIIMDK----------ISK---------------------- 205 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~-~t~~~L~~~F~~f----G~i~~v~i~~d~----------~~g---------------------- 205 (255)
..++.+|-|-|++|. +...+|..+|++| |.+..|.|.... ..|
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn 222 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDN 222 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCcc
Confidence 455788999999986 5778999999887 567777765321 001
Q ss_pred ----C----------c-------------------ceEEEEEeCCHHHHHHHHHHhCCceeCC--EEEEEEE
Q 025313 206 ----R----------S-------------------KGYAFIEYTTEEAASAALKEMNGKIING--WMIVVDV 242 (255)
Q Consensus 206 ----~----------~-------------------rg~aFV~F~~~~~A~~Al~~l~g~~l~g--~~l~V~~ 242 (255)
+ . --||.|++.+.+.+......++|..+.. ..+-+.+
T Consensus 223 ~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRf 294 (622)
T COG5638 223 VFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRF 294 (622)
T ss_pred chhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeee
Confidence 0 1 2379999999999999999999988874 3444444
No 210
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=52.50 E-value=34 Score=29.14 Aligned_cols=59 Identities=12% Similarity=0.160 Sum_probs=44.9
Q ss_pred CccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhCCCCCc
Q 025313 56 KHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGVPGVL 127 (255)
Q Consensus 56 ~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~~~g~~ 127 (255)
+.|+-|-.+|+. .-.-|..+|.+| |.|.+.+. +..--+-+|.|.+.-+|++|+..||.+
T Consensus 197 D~WVTVfGFppg---~~s~vL~~F~~c-----G~Vvkhv~-----~~ngNwMhirYssr~~A~KALskng~i 255 (350)
T KOG4285|consen 197 DTWVTVFGFPPG---QVSIVLNLFSRC-----GEVVKHVT-----PSNGNWMHIRYSSRTHAQKALSKNGTI 255 (350)
T ss_pred cceEEEeccCcc---chhHHHHHHHhh-----Ceeeeeec-----CCCCceEEEEecchhHHHHhhhhcCee
Confidence 358888888875 334688889988 99965443 333458899999999999999988754
No 211
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=50.34 E-value=12 Score=25.51 Aligned_cols=41 Identities=7% Similarity=0.087 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh
Q 025313 69 VVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 69 ~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
.+-..||.++|. .||.|. |..+ + -..|||.....+.|..++
T Consensus 19 eWK~~DI~qlFs-----pfG~I~-VsWi-~-----dTSAfV~l~~r~~~~~v~ 59 (87)
T PF08675_consen 19 EWKTSDIYQLFS-----PFGQIY-VSWI-N-----DTSAFVALHNRDQAKVVM 59 (87)
T ss_dssp T--HHHHHHHCC-----CCCCEE-EEEE-C-----TTEEEEEECCCHHHHHHH
T ss_pred HhhhhhHHHHhc-----cCCcEE-EEEE-c-----CCcEEEEeecHHHHHHHH
Confidence 799999999999 669884 2221 2 468999999999986544
No 212
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=49.21 E-value=45 Score=21.58 Aligned_cols=61 Identities=11% Similarity=0.230 Sum_probs=42.6
Q ss_pred HHHHHHHhcCC-CEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 025313 181 KTLRAAFEGFG-ELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 244 (255)
Q Consensus 181 ~~L~~~F~~fG-~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~ 244 (255)
++|++-|...| .|..+.-+..+.++.+-..-||+.+...+... .++=..+++..|+|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCC
Confidence 46777787776 47777766666677777788999887655333 334466788888888754
No 213
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=45.15 E-value=40 Score=21.94 Aligned_cols=61 Identities=13% Similarity=0.256 Sum_probs=42.3
Q ss_pred HHHHHHHhcCC-CEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 025313 181 KTLRAAFEGFG-ELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 244 (255)
Q Consensus 181 ~~L~~~F~~fG-~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~ 244 (255)
.+|++-|...| ++..+.-+..+.++.+...=+|+-....+-.. .|+=+.|+|++|.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 46788888887 47788777777677787788888876533222 334466788888887643
No 214
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=43.89 E-value=11 Score=31.05 Aligned_cols=62 Identities=8% Similarity=0.091 Sum_probs=43.6
Q ss_pred ccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEE-eec--------CCcc----ceEEeeeCC
Q 025313 47 TLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHV--------SWQS----NFGFCCELD 113 (255)
Q Consensus 47 ~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~-~~~--------~~~~----g~aFV~f~~ 113 (255)
..++ ++++|. ......|++++.++ |.|..|-+-. +.. |..+ .-|.|+|.+
T Consensus 75 GVvy-lS~IPp-----------~m~~~rlReil~~y-----GeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~ 137 (278)
T KOG3152|consen 75 GVVY-LSNIPP-----------YMDPVRLREILSQY-----GEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFIS 137 (278)
T ss_pred eEEE-eccCCC-----------ccCHHHHHHHHHhc-----cccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHH
Confidence 3444 788887 89999999999966 9998777553 222 2222 357899999
Q ss_pred HHHHHHH-hCCCC
Q 025313 114 DECAQEL-TGVPG 125 (255)
Q Consensus 114 ~e~a~~a-~~~~g 125 (255)
...|..+ ..||+
T Consensus 138 KrvAK~iAe~Lnn 150 (278)
T KOG3152|consen 138 KRVAKRIAELLNN 150 (278)
T ss_pred HHHHHHHHHHhCC
Confidence 9999554 44465
No 215
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=43.68 E-value=46 Score=28.20 Aligned_cols=79 Identities=10% Similarity=0.232 Sum_probs=56.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCC-------CCCcceEEEEEeCCHHHHHH----HHHHhCC--ce
Q 025313 166 TKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKI-------SKRSKGYAFIEYTTEEAASA----ALKEMNG--KI 232 (255)
Q Consensus 166 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~-------~g~~rg~aFV~F~~~~~A~~----Al~~l~g--~~ 232 (255)
++.|...|+...++=-.+..-|-+||+|++|.++.+.. ......-..+.|-+.+.+-. .++.|.- +.
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 67788999998888778888899999999999998751 11233457888888877543 3444433 34
Q ss_pred eCCEEEEEEEec
Q 025313 233 INGWMIVVDVAK 244 (255)
Q Consensus 233 l~g~~l~V~~a~ 244 (255)
+....|.|.+..
T Consensus 95 L~S~~L~lsFV~ 106 (309)
T PF10567_consen 95 LKSESLTLSFVS 106 (309)
T ss_pred cCCcceeEEEEE
Confidence 667777777754
No 216
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=42.84 E-value=61 Score=23.22 Aligned_cols=52 Identities=10% Similarity=0.010 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhC-CCC
Q 025313 69 VVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG-VPG 125 (255)
Q Consensus 69 ~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~-~~g 125 (255)
-++-++|.. |... .-..|..++|.++.. ..+--+.+.|.+.++|.+... .||
T Consensus 24 ~~~~d~l~~-f~~~---~~~~i~~~riird~~-pnrymVLikF~~~~~Ad~Fy~~fNG 76 (110)
T PF07576_consen 24 MTPSDFLLF-FGAP---FREDIEHIRIIRDGT-PNRYMVLIKFRDQESADEFYEEFNG 76 (110)
T ss_pred cccHHHHHH-hhhc---ccccEEEEEEeeCCC-CceEEEEEEECCHHHHHHHHHHhCC
Confidence 445555543 4322 335666667764322 356678889999999977653 254
No 217
>PRK11901 hypothetical protein; Reviewed
Probab=40.62 E-value=1.1e+02 Score=26.40 Aligned_cols=62 Identities=18% Similarity=0.229 Sum_probs=43.1
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEE--EeCCHHHHHHHHHHhCC
Q 025313 164 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFI--EYTTEEAASAALKEMNG 230 (255)
Q Consensus 164 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV--~F~~~~~A~~Al~~l~g 230 (255)
....+|-|..+. +++.|..|..+.+ +..+.+.....+|++- |-.| .|.+.++|..|+..|-.
T Consensus 243 ~~~YTLQL~Aas---~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 243 ASHYTLQLSSAS---RSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCCeEEEeecCC---CHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCH
Confidence 345677776653 5788988888876 3556666655566653 4433 78999999999988753
No 218
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=39.84 E-value=13 Score=32.79 Aligned_cols=61 Identities=15% Similarity=0.221 Sum_probs=51.2
Q ss_pred ccceEEEcCCCCCCCHH--------HHHHHHhc--CCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Q 025313 165 KTKKLFVTGLSFYTSEK--------TLRAAFEG--FGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAAL 225 (255)
Q Consensus 165 ~~~~l~V~nLp~~~t~~--------~L~~~F~~--fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al 225 (255)
..+.+|+.+.+.....+ ++...|.. .+.+..+++.+|.....++|--|++|.....|++.+
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFN 243 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHh
Confidence 35678888888766544 89999988 678889999988877889999999999999999877
No 219
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=39.28 E-value=42 Score=29.49 Aligned_cols=68 Identities=18% Similarity=0.182 Sum_probs=47.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCC-EEEEEEEecCCCC---CcceEEEEEeCCHHHHHHHHHHhCCceeC
Q 025313 166 TKKLFVTGLSFYTSEKTLRAAFEGFGE-LVEVKIIMDKISK---RSKGYAFIEYTTEEAASAALKEMNGKIIN 234 (255)
Q Consensus 166 ~~~l~V~nLp~~~t~~~L~~~F~~fG~-i~~v~i~~d~~~g---~~rg~aFV~F~~~~~A~~Al~~l~g~~l~ 234 (255)
..++-|.+||+..++.++.+-..+|-. +....+.... .+ .-.+.|||.|.++++...-...++|+.+-
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~-~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKAD-ESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheecccc-ccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 457889999999999999887777643 3333333211 11 12567899999999988877788887753
No 220
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=36.61 E-value=4.6 Score=36.94 Aligned_cols=73 Identities=11% Similarity=0.128 Sum_probs=53.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEE
Q 025313 166 TKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMI 238 (255)
Q Consensus 166 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l 238 (255)
.+.|+++|++++++-++|..+++.+.-+..+-+..+-...+...++.|.|+---....|..+||+..+....+
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~ 303 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFL 303 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccc
Confidence 5689999999999999999999988766666554332223344567899986666677777788876654443
No 221
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=33.39 E-value=62 Score=20.99 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=21.1
Q ss_pred EEEEEeCCHHHHHHHHHHhCCceeCC
Q 025313 210 YAFIEYTTEEAASAALKEMNGKIING 235 (255)
Q Consensus 210 ~aFV~F~~~~~A~~Al~~l~g~~l~g 235 (255)
+.+|.|.+..+|.+|-+.|....+..
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~ 28 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPV 28 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcE
Confidence 68999999999999998886654433
No 222
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=31.35 E-value=2.1e+02 Score=20.85 Aligned_cols=50 Identities=20% Similarity=0.311 Sum_probs=32.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhCCccccceEE-----eecCCccceEEeeeCCHHHHHH
Q 025313 65 PGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-----YHVSWQSNFGFCCELDDECAQE 119 (255)
Q Consensus 65 ~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~-----~~~~~~~g~aFV~f~~~e~a~~ 119 (255)
|--..++.++|++-..+ .|-.-.|+.+.. ...|++.|||.| |.+.|.|.+
T Consensus 30 PG~a~vsK~EirEKla~----mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 30 PGKANVSKTEIREKLAK----MYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCCCCCHHHHHHHHHH----HhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 44467999999987663 445555655332 345667788877 677777765
No 223
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=30.91 E-value=47 Score=30.56 Aligned_cols=39 Identities=23% Similarity=0.534 Sum_probs=34.5
Q ss_pred ceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCC
Q 025313 208 KGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTT 246 (255)
Q Consensus 208 rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~~ 246 (255)
..++++.|++...+.+|+..++|....+..+++..+...
T Consensus 63 ~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~ 101 (534)
T KOG2187|consen 63 PKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATE 101 (534)
T ss_pred CCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhcccc
Confidence 348999999999999999999999999988888887654
No 224
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=29.16 E-value=48 Score=27.20 Aligned_cols=32 Identities=19% Similarity=0.435 Sum_probs=27.6
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCCEEEE
Q 025313 165 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEV 196 (255)
Q Consensus 165 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v 196 (255)
...+||+-|+|...+++.|..+.++.|.+..+
T Consensus 39 eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 39 EKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 36789999999999999999999999865444
No 225
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=29.13 E-value=48 Score=18.57 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=9.8
Q ss_pred CCCHHHHHHHHhcCC
Q 025313 177 YTSEKTLRAAFEGFG 191 (255)
Q Consensus 177 ~~t~~~L~~~F~~fG 191 (255)
.+++++|++.|.+.+
T Consensus 20 Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 20 DTDEDQLKEVFNRIK 34 (36)
T ss_dssp ---HHHHHHHHHCS-
T ss_pred cCCHHHHHHHHHHhc
Confidence 568899999998764
No 226
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=27.86 E-value=1.4e+02 Score=20.26 Aligned_cols=26 Identities=15% Similarity=0.309 Sum_probs=21.5
Q ss_pred CEEEEEEEecCCCCCcceEEEEEeCC
Q 025313 192 ELVEVKIIMDKISKRSKGYAFIEYTT 217 (255)
Q Consensus 192 ~i~~v~i~~d~~~g~~rg~aFV~F~~ 217 (255)
+|.+++|..-...|+-+|+|=|.|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 47788888877678999999999987
No 227
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.43 E-value=2.4e+02 Score=25.24 Aligned_cols=71 Identities=13% Similarity=0.095 Sum_probs=47.6
Q ss_pred CCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhCC-CCCceec
Q 025313 52 LGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGV-PGVLSVQ 130 (255)
Q Consensus 52 ~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~~-~g~~~~~ 130 (255)
-.+|++-+=|-++|. ..-.+||...|.++ . +.--+|.++. .--||-.|.+...|..++.| +..+.++
T Consensus 387 e~dlpHVlEIydfp~--efkteDll~~f~~y---q-~kgfdIkWvD------dthalaVFss~~~AaeaLt~kh~~lKiR 454 (528)
T KOG4483|consen 387 ESDLPHVLEIYDFPD--EFKTEDLLKAFETY---Q-NKGFDIKWVD------DTHALAVFSSVNRAAEALTLKHDWLKIR 454 (528)
T ss_pred cccccceeEeccCch--hhccHHHHHHHHHh---h-cCCceeEEee------cceeEEeecchHHHHHHhhccCceEEee
Confidence 345677666666666 57778899999977 1 3334555442 34789999999999999888 3344555
Q ss_pred CCCC
Q 025313 131 PDEN 134 (255)
Q Consensus 131 ~~~~ 134 (255)
+...
T Consensus 455 pLaq 458 (528)
T KOG4483|consen 455 PLAQ 458 (528)
T ss_pred ehhh
Confidence 5443
No 228
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.30 E-value=68 Score=25.94 Aligned_cols=18 Identities=6% Similarity=-0.274 Sum_probs=13.2
Q ss_pred cCCccceEEeeeCCHHHH
Q 025313 100 VSWQSNFGFCCELDDECA 117 (255)
Q Consensus 100 ~~~~~g~aFV~f~~~e~a 117 (255)
+.-+|+|+||+|.+--..
T Consensus 105 ~~~~RPY~FieFD~~IQk 122 (216)
T KOG0862|consen 105 QPASRPYAFIEFDTFIQK 122 (216)
T ss_pred CccCCCeeEEehhHHHHH
Confidence 335699999999876443
No 229
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=24.57 E-value=2.6e+02 Score=19.85 Aligned_cols=43 Identities=23% Similarity=0.284 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Q 025313 180 EKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAAL 225 (255)
Q Consensus 180 ~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al 225 (255)
+.+|.++.+..| |.+-.|..|..+ ..-||++++.|.+..-.++
T Consensus 26 WPE~~a~lk~ag-i~nYSIfLde~~--n~lFgy~E~~d~~a~m~~~ 68 (105)
T COG3254 26 WPELLALLKEAG-IRNYSIFLDEEE--NLLFGYWEYEDFEADMAKM 68 (105)
T ss_pred cHHHHHHHHHcC-CceeEEEecCCc--ccEEEEEEEcChHHHHHHH
Confidence 457788888888 677777777533 3459999999655444433
No 230
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=24.00 E-value=1.6e+02 Score=20.42 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=21.1
Q ss_pred CEEEEEEEecCCCCCcceEEEEEeCC
Q 025313 192 ELVEVKIIMDKISKRSKGYAFIEYTT 217 (255)
Q Consensus 192 ~i~~v~i~~d~~~g~~rg~aFV~F~~ 217 (255)
+|.+|++.+-...|+-++||=|+|.+
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 47778877766578899999999987
No 231
>PRK10905 cell division protein DamX; Validated
Probab=23.38 E-value=3.5e+02 Score=23.42 Aligned_cols=60 Identities=13% Similarity=0.121 Sum_probs=39.7
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEE--EeCCHHHHHHHHHHhC
Q 025313 165 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFI--EYTTEEAASAALKEMN 229 (255)
Q Consensus 165 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV--~F~~~~~A~~Al~~l~ 229 (255)
...+|-|..+. +++.|++|-.+.|- ....+.....+|+.. |-.+ .|.+.++|++|+..|-
T Consensus 246 ~~YTLQL~A~S---s~~~l~~fakKlgL-~~y~vy~TtRnGkpW-YVV~yG~YaSraeAk~AiakLP 307 (328)
T PRK10905 246 SHYTLQLSSSS---NYDNLNGWAKKENL-KNYVVYETTRNGQPW-YVLVSGVYASKEEAKRAVSTLP 307 (328)
T ss_pred CceEEEEEecC---CHHHHHHHHHHcCC-CceEEEEeccCCceE-EEEEecCCCCHHHHHHHHHHCC
Confidence 34567776665 66888888888753 333344444466543 3322 7899999999998874
No 232
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=22.49 E-value=31 Score=22.31 Aligned_cols=13 Identities=31% Similarity=0.455 Sum_probs=9.2
Q ss_pred CCccceEEeeeCC
Q 025313 101 SWQSNFGFCCELD 113 (255)
Q Consensus 101 ~~~~g~aFV~f~~ 113 (255)
...+|||||+=.+
T Consensus 12 ~~~kGyGFI~~~~ 24 (69)
T PRK09507 12 NESKGFGFITPED 24 (69)
T ss_pred eCCCCcEEEecCC
Confidence 4459999997443
No 233
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=21.97 E-value=1.3e+02 Score=23.71 Aligned_cols=56 Identities=20% Similarity=0.214 Sum_probs=37.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHh-cCCCEEEEEEEecCCCC--CcceEEEEEeCCHHHHHHHHHH
Q 025313 166 TKKLFVTGLSFYTSEKTLRAAFE-GFGELVEVKIIMDKISK--RSKGYAFIEYTTEEAASAALKE 227 (255)
Q Consensus 166 ~~~l~V~nLp~~~t~~~L~~~F~-~fG~i~~v~i~~d~~~g--~~rg~aFV~F~~~~~A~~Al~~ 227 (255)
.+++|.. .++++|.++-. .-|.+..+.+-+.. .+ ..+|--||+|.+.+.|...++.
T Consensus 111 ~r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 111 ERTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred Hhhhhcc-----CCHHHHHHHHHHhcccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhhh
Confidence 4567765 45655554432 11788888776654 33 4577889999999998887643
No 234
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=21.56 E-value=58 Score=29.56 Aligned_cols=48 Identities=23% Similarity=0.171 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhCCCC
Q 025313 68 GVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGVPG 125 (255)
Q Consensus 68 ~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~~~g 125 (255)
+--|.++|..+|.++ |.|.+|.+-.. ---|.|+|.+..+|-.|....+
T Consensus 383 glnt~a~ln~hfA~f-----G~i~n~qv~~~-----~~~a~vTF~t~aeag~a~~s~~ 430 (526)
T KOG2135|consen 383 GLNTIADLNPHFAQF-----GEIENIQVDYS-----SLHAVVTFKTRAEAGEAYASHG 430 (526)
T ss_pred CCchHhhhhhhhhhc-----CccccccccCc-----hhhheeeeeccccccchhcccc
Confidence 456788999999955 99998887522 4478999999999966666555
No 235
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=21.01 E-value=2.6e+02 Score=23.71 Aligned_cols=56 Identities=20% Similarity=0.245 Sum_probs=38.8
Q ss_pred ccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCH
Q 025313 49 LFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDD 114 (255)
Q Consensus 49 ~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~ 114 (255)
-| ++|-|+.|+..|+.+.+ .-+++.+.|. ..-.+..+.......+..||-|+|...
T Consensus 95 ~f-v~~~~f~l~LGDNi~~~--~l~~~~~~~~-------~~~~ga~i~~~~V~dP~rfGV~e~d~~ 150 (286)
T COG1209 95 DF-VGDDDFVLYLGDNIFQD--GLSELLEHFA-------EEGSGATILLYEVDDPSRYGVVEFDED 150 (286)
T ss_pred hh-cCCCceEEEecCceecc--ChHHHHHHHh-------ccCCCcEEEEEEcCCcccceEEEEcCC
Confidence 45 89999999999988764 4445555555 333455555566667788999998843
No 236
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=20.74 E-value=69 Score=19.75 Aligned_cols=12 Identities=33% Similarity=0.534 Sum_probs=8.6
Q ss_pred CccceEEeeeCC
Q 025313 102 WQSNFGFCCELD 113 (255)
Q Consensus 102 ~~~g~aFV~f~~ 113 (255)
..+|||||...+
T Consensus 6 ~~~GfGFv~~~~ 17 (58)
T PF08206_consen 6 HPKGFGFVIPDD 17 (58)
T ss_dssp -SSS-EEEEECT
T ss_pred EcCCCEEEEECC
Confidence 368999999777
Done!