Query 025313
Match_columns 255
No_of_seqs 211 out of 2398
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 07:49:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025313.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025313hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3k_A Heterogeneous nuclear r 100.0 5.2E-34 1.8E-38 227.1 14.2 176 42-249 9-186 (196)
2 3md3_A Nuclear and cytoplasmic 100.0 8.5E-34 2.9E-38 219.6 13.4 164 48-245 2-166 (166)
3 2yh0_A Splicing factor U2AF 65 100.0 7.2E-33 2.5E-37 220.8 17.1 187 45-248 3-196 (198)
4 4f02_A Polyadenylate-binding p 100.0 1.2E-33 4.2E-38 228.4 11.1 168 43-246 12-181 (213)
5 2g4b_A Splicing factor U2AF 65 100.0 2E-32 6.7E-37 213.5 15.8 164 45-244 3-172 (172)
6 2cjk_A Nuclear polyadenylated 100.0 8E-34 2.7E-38 220.3 7.6 164 45-246 2-166 (167)
7 1fxl_A Paraneoplastic encephal 100.0 1.2E-32 4.1E-37 213.4 12.7 162 46-243 2-167 (167)
8 1b7f_A Protein (SXL-lethal pro 100.0 1.2E-32 4E-37 213.8 12.6 162 46-243 3-168 (168)
9 2qfj_A FBP-interacting repress 100.0 3.6E-32 1.2E-36 219.6 14.4 173 44-247 26-206 (216)
10 3nmr_A Cugbp ELAV-like family 100.0 4E-32 1.4E-36 212.1 13.6 167 45-244 2-175 (175)
11 1fje_B Nucleolin RBD12, protei 100.0 3.9E-32 1.3E-36 212.6 12.9 167 42-247 9-175 (175)
12 2ghp_A U4/U6 snRNA-associated 100.0 7.7E-31 2.6E-35 221.5 14.2 207 9-247 80-292 (292)
13 3smz_A Protein raver-1, ribonu 100.0 1.2E-29 3.9E-34 213.5 12.9 206 9-248 56-266 (284)
14 2ghp_A U4/U6 snRNA-associated 100.0 2.3E-29 7.7E-34 212.5 11.8 163 42-249 37-200 (292)
15 3pgw_A U1-A; protein-RNA compl 100.0 1.1E-28 3.8E-33 207.3 15.7 178 43-244 6-281 (282)
16 3tyt_A Heterogeneous nuclear r 100.0 1.8E-29 6.2E-34 202.6 9.6 176 45-243 3-204 (205)
17 2adc_A Polypyrimidine tract-bi 100.0 4.4E-28 1.5E-32 197.8 15.5 179 42-246 30-228 (229)
18 3smz_A Protein raver-1, ribonu 100.0 2.9E-28 9.9E-33 204.9 13.1 155 45-247 21-176 (284)
19 3sde_A Paraspeckle component 1 100.0 3.4E-28 1.2E-32 202.3 12.8 157 42-246 18-179 (261)
20 1qm9_A Polypyrimidine tract-bi 100.0 5E-28 1.7E-32 193.0 11.4 175 46-246 3-197 (198)
21 2kn4_A Immunoglobulin G-bindin 99.9 4E-26 1.4E-30 175.8 15.1 140 100-251 9-155 (158)
22 4fxv_A ELAV-like protein 1; RN 99.9 1.9E-24 6.4E-29 153.3 12.3 82 165-246 18-99 (99)
23 2lxi_A RNA-binding protein 10; 99.9 7.5E-24 2.6E-28 147.9 7.1 85 166-250 1-87 (91)
24 3s8s_A Histone-lysine N-methyl 99.9 8.7E-23 3E-27 147.4 12.6 83 164-246 4-86 (110)
25 3md1_A Nuclear and cytoplasmic 99.9 3.2E-22 1.1E-26 137.1 12.5 82 166-247 1-82 (83)
26 2cq0_A Eukaryotic translation 99.9 3.7E-22 1.3E-26 142.5 13.4 90 162-251 11-100 (103)
27 3bs9_A Nucleolysin TIA-1 isofo 99.9 2.4E-22 8.2E-27 138.9 11.9 84 164-247 4-87 (87)
28 1whw_A Hypothetical protein ri 99.9 3.2E-22 1.1E-26 141.8 12.5 90 164-253 6-95 (99)
29 2cqb_A Peptidyl-prolyl CIS-tra 99.9 2.5E-22 8.6E-27 143.1 11.5 90 163-252 9-98 (102)
30 2dnz_A Probable RNA-binding pr 99.9 4.1E-22 1.4E-26 140.1 12.3 89 164-252 3-91 (95)
31 2lea_A Serine/arginine-rich sp 99.9 5.1E-23 1.7E-27 154.2 7.9 91 161-251 42-132 (135)
32 2dgs_A DAZ-associated protein 99.9 4.8E-22 1.6E-26 140.9 12.5 89 163-252 7-95 (99)
33 2dgo_A Cytotoxic granule-assoc 99.9 1.3E-21 4.4E-26 142.5 14.8 89 161-249 10-98 (115)
34 2lkz_A RNA-binding protein 5; 99.9 7.9E-23 2.7E-27 143.5 7.9 81 165-245 8-94 (95)
35 1x5t_A Splicing factor 3B subu 99.9 2.9E-22 9.8E-27 141.2 10.8 88 164-251 3-91 (96)
36 2dng_A Eukaryotic translation 99.9 1.2E-21 4E-26 139.9 14.0 90 161-252 10-99 (103)
37 1x5u_A Splicing factor 3B subu 99.9 5E-22 1.7E-26 142.3 12.1 88 162-249 11-98 (105)
38 2cpz_A CUG triplet repeat RNA- 99.9 1.2E-21 4.1E-26 142.6 14.1 89 162-250 21-109 (115)
39 2cqc_A Arginine/serine-rich sp 99.9 1.1E-21 3.6E-26 137.9 13.3 86 160-245 9-94 (95)
40 1x5s_A Cold-inducible RNA-bind 99.9 3.5E-22 1.2E-26 142.3 10.9 90 163-252 9-98 (102)
41 2dnm_A SRP46 splicing factor; 99.9 3.4E-22 1.2E-26 142.7 10.7 88 162-249 9-96 (103)
42 1x4h_A RNA-binding protein 28; 99.9 1E-21 3.5E-26 142.1 13.0 90 162-251 11-106 (111)
43 1wi8_A EIF-4B, eukaryotic tran 99.9 8.7E-22 3E-26 140.8 12.5 88 163-252 12-100 (104)
44 2cph_A RNA binding motif prote 99.9 9.1E-22 3.1E-26 141.4 12.4 92 161-252 10-103 (107)
45 2do4_A Squamous cell carcinoma 99.9 1.5E-21 5.3E-26 138.5 13.4 85 163-248 14-98 (100)
46 4f25_A Polyadenylate-binding p 99.9 6.4E-22 2.2E-26 144.2 11.6 81 165-247 4-84 (115)
47 2x1f_A MRNA 3'-END-processing 99.9 8.4E-22 2.9E-26 138.8 11.5 83 165-247 1-83 (96)
48 3mdf_A Peptidyl-prolyl CIS-tra 99.9 6.8E-22 2.3E-26 136.0 10.6 81 164-244 5-85 (85)
49 1rk8_A CG8781-PA, CG8781-PA pr 99.9 7.7E-22 2.6E-26 152.8 12.2 85 163-247 69-153 (165)
50 2dnh_A Bruno-like 5, RNA bindi 99.9 1.8E-21 6.1E-26 139.4 13.2 87 163-250 12-101 (105)
51 2d9p_A Polyadenylate-binding p 99.9 1.7E-21 5.8E-26 139.0 12.6 88 162-251 11-98 (103)
52 2cpf_A RNA binding motif prote 99.9 1.1E-21 3.7E-26 138.8 11.4 86 165-250 4-92 (98)
53 2e5h_A Zinc finger CCHC-type a 99.9 1.4E-21 4.8E-26 137.0 11.8 83 162-244 12-94 (94)
54 1p27_B RNA-binding protein 8A; 99.9 1.1E-21 3.8E-26 140.7 11.2 85 163-247 20-104 (106)
55 2fy1_A RNA-binding motif prote 99.9 1.1E-21 3.7E-26 143.2 11.0 83 164-247 5-87 (116)
56 2la6_A RNA-binding protein FUS 99.9 1.5E-21 5E-26 138.4 11.3 84 161-244 8-99 (99)
57 2dgp_A Bruno-like 4, RNA bindi 99.9 9.5E-22 3.2E-26 141.1 10.4 91 162-252 9-102 (106)
58 3p5t_L Cleavage and polyadenyl 99.9 1.5E-22 5.2E-27 141.0 6.0 82 167-248 2-85 (90)
59 2cpe_A RNA-binding protein EWS 99.9 1.8E-21 6.2E-26 141.2 11.9 90 162-251 11-108 (113)
60 1u6f_A Tcubp1, RNA-binding pro 99.9 3.3E-21 1.1E-25 145.0 13.7 89 161-249 37-125 (139)
61 1oo0_B CG8781-PA, drosophila Y 99.9 1.6E-21 5.5E-26 140.8 11.5 86 163-248 23-108 (110)
62 2jrs_A RNA-binding protein 39; 99.9 1.8E-21 6E-26 140.2 11.6 86 162-247 22-107 (108)
63 2div_A TRNA selenocysteine ass 99.9 1.5E-21 5E-26 138.3 10.6 85 164-248 7-96 (99)
64 2cqd_A RNA-binding region cont 99.9 4.4E-21 1.5E-25 139.9 13.4 86 161-247 12-97 (116)
65 2i2y_A Fusion protein consists 99.9 3.2E-22 1.1E-26 152.5 7.5 133 101-247 10-149 (150)
66 2cqg_A TDP-43, TAR DNA-binding 99.9 7.7E-21 2.6E-25 135.6 14.2 90 161-252 10-99 (103)
67 2jwn_A Embryonic polyadenylate 99.9 2.2E-21 7.6E-26 143.1 11.7 91 164-255 34-124 (124)
68 2cqi_A Nucleolysin TIAR; RNA r 99.9 8.6E-21 3E-25 135.3 14.3 87 161-249 10-96 (103)
69 2do0_A HnRNP M, heterogeneous 99.9 9.1E-21 3.1E-25 137.7 14.6 83 163-246 12-94 (114)
70 2cq3_A RNA-binding protein 9; 99.9 1.3E-20 4.4E-25 134.4 14.8 88 161-250 10-97 (103)
71 2khc_A Testis-specific RNP-typ 99.9 6E-21 2E-25 139.5 13.3 84 161-244 35-118 (118)
72 2ywk_A Putative RNA-binding pr 99.9 3.6E-21 1.2E-25 135.2 11.5 83 162-245 12-94 (95)
73 3ns6_A Eukaryotic translation 99.9 5E-22 1.7E-26 141.1 7.0 83 165-247 5-94 (100)
74 2dh8_A DAZ-associated protein 99.9 2.9E-21 9.9E-26 138.3 10.9 89 162-251 12-100 (105)
75 1x4b_A Heterogeneous nuclear r 99.9 4E-21 1.4E-25 140.1 11.7 90 163-253 24-113 (116)
76 3ucg_A Polyadenylate-binding p 99.9 3.7E-21 1.3E-25 133.4 11.0 81 165-246 5-85 (89)
77 2dgv_A HnRNP M, heterogeneous 99.9 4.6E-21 1.6E-25 133.9 11.4 84 164-249 6-89 (92)
78 4a8x_A RNA-binding protein wit 99.9 3.4E-21 1.2E-25 133.3 10.5 83 165-247 3-86 (88)
79 2dhg_A TRNA selenocysteine ass 99.9 3.7E-21 1.3E-25 137.5 10.6 85 163-248 6-92 (104)
80 3ulh_A THO complex subunit 4; 99.9 9.1E-21 3.1E-25 136.1 12.5 82 163-245 26-107 (107)
81 3s7r_A Heterogeneous nuclear r 99.9 8.2E-21 2.8E-25 131.2 11.8 80 163-243 8-87 (87)
82 3ex7_B RNA-binding protein 8A; 99.9 2.7E-21 9.1E-26 143.1 9.9 85 163-247 19-103 (126)
83 2dgx_A KIAA0430 protein; RRM d 99.9 8.3E-21 2.8E-25 133.7 11.9 83 164-249 7-93 (96)
84 2kxn_B Transformer-2 protein h 99.9 2.9E-21 9.8E-26 143.5 9.8 86 162-247 42-127 (129)
85 2cqp_A RNA-binding protein 12; 99.8 3.7E-21 1.3E-25 136.0 9.8 84 164-247 13-96 (98)
86 1x4a_A Splicing factor, argini 99.8 2.3E-20 7.8E-25 134.5 14.1 87 162-251 18-104 (109)
87 2dgw_A Probable RNA-binding pr 99.8 1.5E-20 5.2E-25 131.0 12.5 83 163-248 7-89 (91)
88 2rs2_A Musashi-1, RNA-binding 99.8 6.5E-21 2.2E-25 137.4 10.9 87 162-249 21-107 (109)
89 1s79_A Lupus LA protein; RRM, 99.8 3.4E-21 1.2E-25 137.3 8.9 81 163-245 8-88 (103)
90 1p1t_A Cleavage stimulation fa 99.8 2.3E-21 7.8E-26 138.5 7.9 85 163-247 5-89 (104)
91 1h2v_Z 20 kDa nuclear CAP bind 99.8 2E-20 6.9E-25 143.5 13.7 84 164-247 37-120 (156)
92 3n9u_C Cleavage and polyadenyl 99.8 8.4E-21 2.9E-25 145.4 11.5 82 165-246 54-137 (156)
93 1sjq_A Polypyrimidine tract-bi 99.8 6.5E-21 2.2E-25 135.4 9.7 81 162-248 12-94 (105)
94 2cq4_A RNA binding motif prote 99.8 7.6E-21 2.6E-25 138.2 10.2 85 162-247 21-105 (114)
95 2fc9_A NCL protein; structure 99.8 1.9E-20 6.3E-25 133.1 11.9 87 162-252 11-97 (101)
96 2fc8_A NCL protein; structure 99.8 2.4E-20 8.1E-25 132.8 12.4 90 161-253 10-99 (102)
97 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.7E-21 5.7E-26 138.4 6.4 85 161-247 14-99 (100)
98 2ek1_A RNA-binding protein 12; 99.8 3.6E-21 1.2E-25 135.2 7.9 82 164-245 13-94 (95)
99 2cpi_A CCR4-NOT transcription 99.8 1.8E-20 6.2E-25 135.6 11.3 87 163-249 12-104 (111)
100 1x4e_A RNA binding motif, sing 99.8 1.1E-21 3.9E-26 135.0 4.7 81 164-244 3-83 (85)
101 2kt5_A RNA and export factor-b 99.8 1.3E-19 4.5E-24 133.6 15.9 86 162-248 31-116 (124)
102 2err_A Ataxin-2-binding protei 99.8 1.1E-20 3.7E-25 136.3 9.7 85 160-246 23-107 (109)
103 2m2b_A RNA-binding protein 10; 99.8 3.3E-21 1.1E-25 143.6 7.1 85 162-247 19-109 (131)
104 2mss_A Protein (musashi1); RNA 99.8 3.2E-21 1.1E-25 129.5 6.3 75 168-243 1-75 (75)
105 1x4d_A Matrin 3; structural ge 99.8 1.4E-20 4.8E-25 133.5 9.8 82 164-251 13-97 (102)
106 1wez_A HnRNP H', FTP-3, hetero 99.8 1.6E-20 5.6E-25 133.6 9.9 84 163-249 12-95 (102)
107 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 4E-20 1.4E-24 139.1 12.6 83 161-243 58-140 (140)
108 3r27_A HnRNP L, heterogeneous 99.8 2.9E-20 9.9E-25 130.7 10.2 79 163-247 18-98 (100)
109 2dis_A Unnamed protein product 99.8 2.1E-20 7E-25 134.7 9.7 85 164-248 6-94 (109)
110 2cq1_A PTB-like protein L; RRM 99.8 9.9E-20 3.4E-24 129.1 12.9 79 163-247 12-92 (101)
111 2wbr_A GW182, gawky, LD47780P; 99.8 3E-20 1E-24 126.3 9.6 74 165-244 6-79 (89)
112 1wg5_A Heterogeneous nuclear r 99.8 4.9E-20 1.7E-24 131.7 10.9 83 163-247 12-95 (104)
113 1x4c_A Splicing factor, argini 99.8 1.3E-19 4.3E-24 130.5 13.1 78 163-247 12-94 (108)
114 2jvr_A Nucleolar protein 3; RN 99.8 2E-20 6.7E-25 134.9 8.7 81 164-248 26-107 (111)
115 2nlw_A Eukaryotic translation 99.8 2.9E-20 9.9E-25 133.1 9.4 83 164-248 13-102 (105)
116 1uaw_A Mouse-musashi-1; RNP-ty 99.8 7.3E-21 2.5E-25 128.3 5.7 76 167-243 1-76 (77)
117 1x5o_A RNA binding motif, sing 99.8 9E-20 3.1E-24 132.4 11.9 83 163-246 22-112 (114)
118 2dnq_A RNA-binding protein 4B; 99.8 9.4E-20 3.2E-24 126.7 11.4 82 163-252 5-86 (90)
119 2ki2_A SS-DNA binding protein 99.8 3.2E-21 1.1E-25 134.2 3.8 81 167-248 2-82 (90)
120 2cpy_A RNA-binding protein 12; 99.8 2.5E-20 8.4E-25 135.5 8.7 83 162-246 11-94 (114)
121 2cpx_A Hypothetical protein FL 99.8 2.3E-20 7.8E-25 135.8 7.9 88 164-251 23-110 (115)
122 2ad9_A Polypyrimidine tract-bi 99.8 7.7E-20 2.6E-24 133.0 10.6 80 163-248 28-109 (119)
123 2a3j_A U1 small nuclear ribonu 99.8 5.3E-20 1.8E-24 135.9 9.7 82 163-247 26-111 (127)
124 1x4g_A Nucleolysin TIAR; struc 99.8 1.3E-19 4.6E-24 130.5 11.5 84 163-252 22-105 (109)
125 2dgt_A RNA-binding protein 30; 99.8 2.5E-19 8.6E-24 125.0 12.5 82 163-252 7-88 (92)
126 2cpd_A Apobec-1 stimulating pr 99.8 4E-19 1.4E-23 125.7 13.7 84 161-252 10-95 (99)
127 2db1_A Heterogeneous nuclear r 99.8 7.4E-20 2.5E-24 133.7 10.1 82 163-246 14-98 (118)
128 1wex_A Hypothetical protein (r 99.8 1.2E-19 4E-24 129.5 10.9 79 163-247 12-92 (104)
129 2dnn_A RNA-binding protein 12; 99.8 9.2E-20 3.1E-24 131.1 10.3 81 163-246 13-93 (109)
130 1wf1_A RNA-binding protein RAL 99.8 2.4E-19 8.2E-24 129.4 12.4 78 164-249 25-103 (110)
131 2ytc_A PRE-mRNA-splicing facto 99.8 2E-19 6.9E-24 123.6 11.3 78 161-244 7-85 (85)
132 2lcw_A RNA-binding protein FUS 99.7 1.2E-21 4.2E-26 142.9 0.0 89 164-252 5-101 (116)
133 1fj7_A Nucleolin RBD1, protein 99.8 7.6E-21 2.6E-25 135.1 3.7 84 164-249 15-98 (101)
134 2xnq_A Nuclear polyadenylated 99.8 2.6E-19 8.8E-24 126.3 11.6 79 161-247 17-96 (97)
135 2hgl_A HNRPF protein, heteroge 99.8 4.7E-20 1.6E-24 137.7 8.1 82 163-246 41-125 (136)
136 1why_A Hypothetical protein ri 99.8 2.3E-19 8E-24 126.5 11.3 80 163-248 14-95 (97)
137 2hvz_A Splicing factor, argini 99.8 4.9E-20 1.7E-24 130.9 7.8 78 167-249 1-78 (101)
138 2dnp_A RNA-binding protein 14; 99.8 3E-19 1E-23 124.1 11.5 81 163-251 6-86 (90)
139 2jvo_A Nucleolar protein 3; nu 99.8 1.4E-19 4.8E-24 130.2 10.1 80 162-249 27-106 (108)
140 2hgn_A Heterogeneous nuclear r 99.8 7.9E-21 2.7E-25 142.4 3.7 83 163-248 43-125 (139)
141 3pgw_S U1-70K; protein-RNA com 99.8 9.2E-21 3.2E-25 167.8 4.6 84 164-247 100-183 (437)
142 1wel_A RNA-binding protein 12; 99.8 4.8E-20 1.6E-24 136.0 7.7 83 163-246 22-104 (124)
143 2e5j_A Methenyltetrahydrofolat 99.8 1.4E-19 4.7E-24 127.6 9.6 81 163-248 16-96 (97)
144 1nu4_A U1A RNA binding domain; 99.8 5.4E-20 1.9E-24 129.6 7.5 83 163-248 5-91 (97)
145 4f02_A Polyadenylate-binding p 99.8 2.5E-19 8.6E-24 144.3 12.4 84 164-247 13-96 (213)
146 2cpj_A Non-POU domain-containi 99.8 1.9E-19 6.6E-24 127.3 10.2 83 163-251 12-94 (99)
147 1fjc_A Nucleolin RBD2, protein 99.8 1.2E-19 4.1E-24 127.6 9.0 82 163-249 13-94 (96)
148 2krb_A Eukaryotic translation 99.8 3.1E-20 1E-24 126.6 5.5 73 166-240 1-80 (81)
149 2xs2_A Deleted in azoospermia- 99.8 1.1E-19 3.8E-24 129.3 8.3 82 163-247 6-87 (102)
150 1iqt_A AUF1, heterogeneous nuc 99.8 2E-20 7E-25 125.5 4.2 75 168-243 1-75 (75)
151 2cqh_A IGF-II mRNA-binding pro 99.8 1.6E-19 5.4E-24 126.3 8.9 82 164-252 6-89 (93)
152 2dgu_A Heterogeneous nuclear r 99.8 7.2E-19 2.5E-23 125.3 12.1 76 164-247 9-84 (103)
153 3q2s_C Cleavage and polyadenyl 99.8 1.1E-19 3.8E-24 147.8 8.7 81 165-245 67-149 (229)
154 1x4f_A Matrin 3; structural ge 99.8 2.1E-19 7.1E-24 129.3 8.7 79 163-247 22-103 (112)
155 2la4_A Nuclear and cytoplasmic 99.8 2.5E-19 8.6E-24 127.2 9.0 77 164-246 25-101 (101)
156 2kvi_A Nuclear polyadenylated 99.8 1.8E-19 6.3E-24 126.8 8.0 79 163-249 7-86 (96)
157 1x5p_A Negative elongation fac 99.8 2.1E-18 7.1E-23 121.6 13.0 81 163-251 12-92 (97)
158 2j8a_A Histone-lysine N-methyl 99.8 2.8E-19 9.5E-24 129.6 8.5 79 167-245 3-95 (136)
159 2lmi_A GRSF-1, G-rich sequence 99.8 5.3E-20 1.8E-24 132.2 4.7 82 163-246 8-92 (107)
160 1fxl_A Paraneoplastic encephal 99.8 1.3E-18 4.3E-23 134.1 12.6 82 166-247 2-83 (167)
161 1b7f_A Protein (SXL-lethal pro 99.8 1.1E-18 3.6E-23 134.8 11.5 84 165-248 2-85 (168)
162 3lqv_A PRE-mRNA branch site pr 99.8 6.7E-19 2.3E-23 128.0 9.5 80 164-246 6-85 (115)
163 2dha_A FLJ20171 protein; RRM d 99.8 3.4E-19 1.2E-23 130.8 7.1 81 164-246 21-105 (123)
164 1whx_A Hypothetical protein ri 99.8 9.2E-19 3.2E-23 126.5 9.3 77 164-246 8-84 (111)
165 3egn_A RNA-binding protein 40; 99.8 2.1E-19 7.1E-24 135.8 6.1 84 164-247 43-131 (143)
166 2e5g_A U6 snRNA-specific termi 99.8 2.5E-18 8.5E-23 120.4 10.8 77 165-247 7-83 (94)
167 2f3j_A RNA and export factor b 99.8 9.8E-19 3.4E-23 136.7 9.6 83 163-246 85-167 (177)
168 2e44_A Insulin-like growth fac 99.8 1.6E-18 5.6E-23 121.8 9.6 80 164-247 13-93 (96)
169 2cq2_A Hypothetical protein LO 99.8 2.2E-18 7.4E-23 124.1 9.8 78 164-247 23-107 (114)
170 2hgm_A HNRPF protein, heteroge 99.8 8.1E-19 2.8E-23 129.1 7.6 79 164-245 40-120 (126)
171 1wg1_A KIAA1579 protein, homol 99.8 2E-18 6.9E-23 119.4 8.8 76 165-247 4-79 (88)
172 1l3k_A Heterogeneous nuclear r 99.8 5.1E-18 1.8E-22 134.3 12.1 85 162-247 9-93 (196)
173 1sjr_A Polypyrimidine tract-bi 99.8 3.9E-18 1.3E-22 130.2 10.6 80 164-247 44-125 (164)
174 3beg_B Splicing factor, argini 99.8 1.5E-18 5.3E-23 126.1 7.8 76 164-246 14-94 (115)
175 3d2w_A TAR DNA-binding protein 99.8 4.9E-18 1.7E-22 117.7 9.5 77 162-247 7-85 (89)
176 3md3_A Nuclear and cytoplasmic 99.8 7E-18 2.4E-22 129.7 11.4 81 167-248 1-81 (166)
177 3zzy_A Polypyrimidine tract-bi 99.8 1.2E-17 4E-22 123.0 11.8 79 164-247 26-107 (130)
178 2diu_A KIAA0430 protein; struc 99.7 4.2E-18 1.4E-22 116.9 8.6 72 166-247 8-85 (96)
179 2pe8_A Splicing factor 45; RRM 99.7 2E-17 6.8E-22 118.0 11.9 83 164-246 6-94 (105)
180 2e5i_A Heterogeneous nuclear r 99.7 4.7E-17 1.6E-21 119.2 13.4 77 165-247 24-103 (124)
181 1wf0_A TDP-43, TAR DNA-binding 99.7 3E-18 1E-22 118.5 6.4 81 165-252 4-84 (88)
182 2bz2_A Negative elongation fac 99.7 1.1E-17 3.7E-22 122.7 8.8 81 163-251 36-116 (121)
183 3tyt_A Heterogeneous nuclear r 99.7 2.1E-17 7.1E-22 132.2 11.1 77 165-246 3-80 (205)
184 2hzc_A Splicing factor U2AF 65 99.7 2.2E-17 7.7E-22 113.7 9.4 72 164-242 4-86 (87)
185 2dnl_A Cytoplasmic polyadenyla 99.7 1.9E-17 6.4E-22 120.2 9.3 76 164-242 6-84 (114)
186 2qfj_A FBP-interacting repress 99.7 1.5E-17 5.2E-22 133.6 9.2 83 164-246 26-108 (216)
187 2voo_A Lupus LA protein; RNA-b 99.7 4.3E-17 1.5E-21 129.1 10.9 79 165-245 108-186 (193)
188 2cjk_A Nuclear polyadenylated 99.7 3.1E-17 1E-21 126.5 8.7 80 165-246 2-81 (167)
189 4f25_A Polyadenylate-binding p 99.7 2.5E-18 8.6E-23 125.0 2.3 110 43-182 2-113 (115)
190 3nmr_A Cugbp ELAV-like family 99.7 6.2E-17 2.1E-21 125.6 10.1 83 165-247 2-89 (175)
191 2dit_A HIV TAT specific factor 99.7 3.5E-16 1.2E-20 113.0 12.8 85 162-250 11-106 (112)
192 3pgw_A U1-A; protein-RNA compl 99.7 2E-16 6.7E-21 132.4 11.9 82 163-247 6-91 (282)
193 3u1l_A PRE-mRNA-splicing facto 99.7 9.3E-17 3.2E-21 130.3 8.6 79 163-247 131-230 (240)
194 3v4m_A Splicing factor U2AF 65 99.7 4.5E-16 1.5E-20 111.0 9.6 83 164-246 3-97 (105)
195 1jmt_A Splicing factor U2AF 35 99.7 9E-17 3.1E-21 114.5 5.5 72 171-243 20-103 (104)
196 1fje_B Nucleolin RBD12, protei 99.6 5.4E-17 1.8E-21 126.2 3.9 84 162-247 9-92 (175)
197 2adc_A Polypyrimidine tract-bi 99.6 5.1E-16 1.7E-20 126.2 9.6 79 163-246 31-110 (229)
198 3ue2_A Poly(U)-binding-splicin 99.6 2.2E-15 7.5E-20 109.5 9.9 81 165-245 19-108 (118)
199 1qm9_A Polypyrimidine tract-bi 99.6 6.9E-16 2.4E-20 122.4 7.3 76 166-246 3-79 (198)
200 3sde_A Paraspeckle component 1 99.6 4.4E-15 1.5E-19 123.0 11.3 78 163-246 19-96 (261)
201 2g4b_A Splicing factor U2AF 65 99.6 1E-14 3.5E-19 112.8 10.6 76 165-247 3-89 (172)
202 2d9o_A DNAJ (HSP40) homolog, s 99.6 3.4E-14 1.2E-18 100.1 11.4 76 166-248 10-92 (100)
203 2yh0_A Splicing factor U2AF 65 99.6 1.1E-14 3.6E-19 115.3 9.8 75 165-246 3-88 (198)
204 3tht_A Alkylated DNA repair pr 99.5 6.6E-14 2.3E-18 119.4 10.5 77 162-244 14-97 (345)
205 1s79_A Lupus LA protein; RRM, 99.5 1.6E-14 5.4E-19 102.6 5.3 68 42-126 7-74 (103)
206 3s6e_A RNA-binding protein 39; 99.5 1E-13 3.5E-18 100.0 9.6 78 164-245 5-92 (114)
207 3lqv_A PRE-mRNA branch site pr 99.5 6.9E-15 2.4E-19 106.6 1.5 104 43-192 5-109 (115)
208 2lxi_A RNA-binding protein 10; 99.5 4.4E-14 1.5E-18 98.0 4.8 60 46-122 1-62 (91)
209 2hvz_A Splicing factor, argini 99.4 4.4E-14 1.5E-18 99.9 4.1 58 48-126 2-60 (101)
210 4fxv_A ELAV-like protein 1; RN 99.4 4.2E-14 1.5E-18 99.7 3.7 67 44-127 17-85 (99)
211 1wez_A HnRNP H', FTP-3, hetero 99.4 3.9E-14 1.3E-18 100.4 3.1 67 42-126 11-77 (102)
212 1wg5_A Heterogeneous nuclear r 99.4 9E-14 3.1E-18 98.9 4.7 68 42-126 11-79 (104)
213 2db1_A Heterogeneous nuclear r 99.4 1E-13 3.4E-18 101.0 4.8 68 42-126 13-83 (118)
214 2cpy_A RNA-binding protein 12; 99.4 1.1E-13 3.7E-18 100.2 4.5 68 42-126 11-79 (114)
215 2hgl_A HNRPF protein, heteroge 99.4 1.1E-13 3.6E-18 103.2 4.2 67 43-126 41-110 (136)
216 2dnn_A RNA-binding protein 12; 99.4 9.1E-14 3.1E-18 99.6 3.5 64 45-126 15-78 (109)
217 2dhg_A TRNA selenocysteine ass 99.4 8.1E-13 2.8E-17 93.8 8.4 68 43-126 6-74 (104)
218 2mss_A Protein (musashi1); RNA 99.4 2E-13 6.9E-18 91.0 4.7 61 49-126 2-63 (75)
219 2lmi_A GRSF-1, G-rich sequence 99.4 1.6E-13 5.4E-18 98.2 4.2 68 42-126 7-77 (107)
220 2krb_A Eukaryotic translation 99.4 1.7E-13 5.9E-18 92.8 4.0 63 47-127 2-71 (81)
221 2wbr_A GW182, gawky, LD47780P; 99.4 6.6E-13 2.3E-17 90.1 6.8 60 45-126 6-66 (89)
222 3s8s_A Histone-lysine N-methyl 99.4 1.1E-13 3.8E-18 99.5 3.0 66 44-126 4-71 (110)
223 2dha_A FLJ20171 protein; RRM d 99.4 3.7E-13 1.3E-17 98.5 5.5 65 44-125 21-89 (123)
224 2dgp_A Bruno-like 4, RNA bindi 99.4 3.9E-13 1.3E-17 95.8 5.5 69 41-126 8-78 (106)
225 2div_A TRNA selenocysteine ass 99.4 5.7E-13 1.9E-17 93.7 6.2 69 42-127 5-76 (99)
226 1sjq_A Polypyrimidine tract-bi 99.4 5.6E-13 1.9E-17 94.4 6.1 61 42-124 12-73 (105)
227 2do4_A Squamous cell carcinoma 99.4 3.1E-13 1.1E-17 95.3 4.7 68 42-126 13-81 (100)
228 1wel_A RNA-binding protein 12; 99.4 2.7E-13 9.3E-18 99.5 4.4 68 42-126 21-89 (124)
229 3s7r_A Heterogeneous nuclear r 99.4 1.8E-13 6E-18 94.0 3.2 67 42-125 7-74 (87)
230 2fy1_A RNA-binding motif prote 99.4 3.9E-13 1.3E-17 97.5 5.1 66 44-126 5-71 (116)
231 2dnh_A Bruno-like 5, RNA bindi 99.4 3.4E-13 1.2E-17 95.9 4.7 68 42-126 11-79 (105)
232 2hgn_A Heterogeneous nuclear r 99.4 1.5E-13 5.2E-18 102.7 2.8 67 42-126 42-108 (139)
233 2dgo_A Cytotoxic granule-assoc 99.4 1.9E-12 6.4E-17 93.6 8.5 68 42-126 11-80 (115)
234 1iqt_A AUF1, heterogeneous nuc 99.4 5.4E-13 1.9E-17 88.8 5.1 60 49-125 2-62 (75)
235 2ywk_A Putative RNA-binding pr 99.4 2E-13 6.9E-18 95.3 3.0 68 42-126 12-80 (95)
236 1x5u_A Splicing factor 3B subu 99.4 5.9E-13 2E-17 94.7 5.4 68 42-126 11-80 (105)
237 3p5t_L Cleavage and polyadenyl 99.4 2.5E-13 8.5E-18 93.9 3.3 62 48-126 3-68 (90)
238 2dh8_A DAZ-associated protein 99.4 4.9E-13 1.7E-17 95.1 5.0 68 42-126 12-80 (105)
239 1x5s_A Cold-inducible RNA-bind 99.4 7.2E-13 2.4E-17 93.7 5.6 68 42-126 8-77 (102)
240 2cqc_A Arginine/serine-rich sp 99.4 5.7E-13 2E-17 92.9 5.0 68 42-126 11-80 (95)
241 2dng_A Eukaryotic translation 99.4 4.7E-13 1.6E-17 94.9 4.6 68 42-127 11-79 (103)
242 1whw_A Hypothetical protein ri 99.4 4.2E-13 1.5E-17 94.4 4.3 68 42-126 4-73 (99)
243 2m2b_A RNA-binding protein 10; 99.4 1.7E-12 5.8E-17 96.2 7.8 67 42-126 19-89 (131)
244 1x5t_A Splicing factor 3B subu 99.4 5E-13 1.7E-17 93.4 4.6 67 44-127 3-72 (96)
245 2d9p_A Polyadenylate-binding p 99.4 3.8E-13 1.3E-17 95.4 3.9 67 42-126 11-78 (103)
246 2dnr_A Synaptojanin-1; RRM dom 99.4 3.7E-12 1.3E-16 86.5 8.5 74 164-246 5-86 (91)
247 2dgs_A DAZ-associated protein 99.4 5.5E-13 1.9E-17 93.8 4.7 68 42-126 6-74 (99)
248 1fj7_A Nucleolin RBD1, protein 99.4 5.5E-13 1.9E-17 94.2 4.6 66 44-126 15-80 (101)
249 2do0_A HnRNP M, heterogeneous 99.3 5.3E-13 1.8E-17 96.4 4.6 68 42-126 11-79 (114)
250 2cqb_A Peptidyl-prolyl CIS-tra 99.3 4.4E-13 1.5E-17 94.8 3.9 69 41-126 7-77 (102)
251 2hgm_A HNRPF protein, heteroge 99.3 4.2E-13 1.4E-17 98.5 3.8 66 42-125 38-105 (126)
252 2dgw_A Probable RNA-binding pr 99.3 8.8E-13 3E-17 91.3 5.2 67 42-126 6-72 (91)
253 2lkz_A RNA-binding protein 5; 99.3 2.8E-13 9.5E-18 94.6 2.6 66 43-125 6-75 (95)
254 2cqp_A RNA-binding protein 12; 99.3 8.4E-13 2.9E-17 92.6 5.1 68 42-126 11-80 (98)
255 1wi8_A EIF-4B, eukaryotic tran 99.3 5.3E-13 1.8E-17 94.8 4.0 67 42-126 11-79 (104)
256 2cqi_A Nucleolysin TIAR; RNA r 99.3 1.5E-12 5E-17 92.3 6.2 67 42-126 11-78 (103)
257 2e5h_A Zinc finger CCHC-type a 99.3 6.8E-13 2.3E-17 92.3 4.3 68 42-126 12-81 (94)
258 2cpz_A CUG triplet repeat RNA- 99.3 9.4E-13 3.2E-17 95.2 5.1 68 42-126 21-90 (115)
259 2cq0_A Eukaryotic translation 99.3 5E-13 1.7E-17 94.7 3.5 69 42-127 11-81 (103)
260 3mdf_A Peptidyl-prolyl CIS-tra 99.3 5.1E-13 1.7E-17 91.2 3.3 68 43-127 4-73 (85)
261 2dnz_A Probable RNA-binding pr 99.3 1.3E-12 4.4E-17 91.1 5.3 66 44-126 3-70 (95)
262 2dgv_A HnRNP M, heterogeneous 99.3 2.3E-12 7.9E-17 89.2 6.6 67 42-126 4-71 (92)
263 3bs9_A Nucleolysin TIA-1 isofo 99.3 4.9E-13 1.7E-17 91.7 3.1 67 43-126 3-71 (87)
264 3ucg_A Polyadenylate-binding p 99.3 6.4E-13 2.2E-17 91.5 3.7 66 45-127 5-71 (89)
265 2lea_A Serine/arginine-rich sp 99.3 1.3E-12 4.5E-17 97.3 5.6 68 42-126 43-112 (135)
266 2la6_A RNA-binding protein FUS 99.3 9.2E-13 3.1E-17 92.7 4.3 68 42-126 9-86 (99)
267 2kxn_B Transformer-2 protein h 99.3 1.1E-12 3.6E-17 97.0 4.8 68 42-126 42-111 (129)
268 2rs2_A Musashi-1, RNA-binding 99.3 4.6E-13 1.6E-17 96.0 2.7 69 40-125 19-88 (109)
269 2cqd_A RNA-binding region cont 99.3 2.3E-12 7.9E-17 93.3 6.2 67 42-125 13-81 (116)
270 2ek1_A RNA-binding protein 12; 99.3 4.9E-13 1.7E-17 93.2 2.5 68 42-126 11-80 (95)
271 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.3 1.9E-12 6.5E-17 96.8 5.8 68 42-126 59-128 (140)
272 2j76_E EIF-4B, EIF4B, eukaryot 99.3 5.1E-13 1.7E-17 94.3 2.4 68 42-127 15-84 (100)
273 2dnm_A SRP46 splicing factor; 99.3 5.8E-13 2E-17 94.4 2.5 68 42-126 9-78 (103)
274 2cqg_A TDP-43, TAR DNA-binding 99.3 2.3E-12 7.9E-17 91.3 5.7 64 42-122 11-75 (103)
275 2cq4_A RNA binding motif prote 99.3 3.5E-13 1.2E-17 97.4 1.4 66 44-126 23-89 (114)
276 3ulh_A THO complex subunit 4; 99.3 1E-12 3.4E-17 93.8 3.8 68 42-126 25-93 (107)
277 3md1_A Nuclear and cytoplasmic 99.3 6.9E-13 2.4E-17 90.1 2.7 64 47-127 2-67 (83)
278 2jrs_A RNA-binding protein 39; 99.3 1.9E-12 6.4E-17 92.7 4.9 69 41-126 21-91 (108)
279 2dgx_A KIAA0430 protein; RRM d 99.3 1.8E-12 6.2E-17 90.7 4.7 66 42-126 5-75 (96)
280 1p27_B RNA-binding protein 8A; 99.3 1.3E-12 4.6E-17 93.0 3.9 68 42-126 19-88 (106)
281 2cph_A RNA binding motif prote 99.3 3E-12 1E-16 91.3 5.7 68 42-126 11-82 (107)
282 2cq3_A RNA-binding protein 9; 99.3 1.8E-12 6.1E-17 91.8 4.5 68 41-126 10-78 (103)
283 2cpf_A RNA binding motif prote 99.3 1.8E-12 6.3E-17 90.9 4.5 65 45-126 4-73 (98)
284 2cpe_A RNA-binding protein EWS 99.3 2E-12 6.9E-17 93.1 4.6 69 42-127 11-89 (113)
285 2cpx_A Hypothetical protein FL 99.3 4.8E-12 1.7E-16 91.4 6.4 68 42-126 21-90 (115)
286 2jwn_A Embryonic polyadenylate 99.3 1.8E-12 6.2E-17 95.0 4.1 66 45-127 35-101 (124)
287 2xs2_A Deleted in azoospermia- 99.3 7.4E-13 2.5E-17 93.7 1.7 66 42-125 5-70 (102)
288 1u6f_A Tcubp1, RNA-binding pro 99.3 4.5E-12 1.5E-16 94.7 6.0 68 42-126 38-107 (139)
289 2nlw_A Eukaryotic translation 99.3 1.6E-12 5.5E-17 92.5 3.4 63 46-126 15-84 (105)
290 1x5o_A RNA binding motif, sing 99.3 2E-12 6.8E-17 93.3 3.8 68 42-126 21-89 (114)
291 1owx_A Lupus LA protein, SS-B, 99.3 1E-11 3.4E-16 89.8 7.4 76 163-244 15-94 (121)
292 1oo0_B CG8781-PA, drosophila Y 99.3 1.9E-12 6.4E-17 92.9 3.6 68 42-126 22-91 (110)
293 1x4h_A RNA-binding protein 28; 99.3 4.6E-12 1.6E-16 90.9 5.6 66 42-124 11-78 (111)
294 2cq1_A PTB-like protein L; RRM 99.3 2.9E-12 9.9E-17 90.4 4.4 63 38-122 7-69 (101)
295 2khc_A Testis-specific RNP-typ 99.3 1.9E-12 6.4E-17 94.0 3.4 69 42-127 36-106 (118)
296 2x1f_A MRNA 3'-END-processing 99.3 1.6E-12 5.5E-17 90.9 2.9 64 46-126 2-67 (96)
297 2kt5_A RNA and export factor-b 99.3 5E-12 1.7E-16 92.7 5.6 67 43-126 32-99 (124)
298 1x4a_A Splicing factor, argini 99.3 4.4E-12 1.5E-16 90.8 5.1 66 42-126 18-84 (109)
299 2jvr_A Nucleolar protein 3; RN 99.3 4.7E-12 1.6E-16 90.9 5.2 65 42-126 24-90 (111)
300 2err_A Ataxin-2-binding protei 99.3 1.5E-12 5E-17 93.4 2.6 67 42-126 25-92 (109)
301 2a3j_A U1 small nuclear ribonu 99.3 6E-12 2.1E-16 92.6 5.8 64 44-126 27-95 (127)
302 1x4f_A Matrin 3; structural ge 99.3 4.5E-12 1.5E-16 90.9 4.9 66 35-122 14-80 (112)
303 1x4b_A Heterogeneous nuclear r 99.3 2.3E-12 7.8E-17 93.3 3.4 66 44-126 25-91 (116)
304 2dis_A Unnamed protein product 99.3 1.6E-11 5.4E-16 87.8 7.7 65 43-124 5-73 (109)
305 3d2w_A TAR DNA-binding protein 99.3 2.2E-12 7.7E-17 88.9 3.1 60 42-122 7-66 (89)
306 1p1t_A Cleavage stimulation fa 99.2 2.8E-12 9.5E-17 90.9 3.5 66 44-126 6-73 (104)
307 4a8x_A RNA-binding protein wit 99.2 2E-12 6.9E-17 88.7 2.6 65 45-126 3-70 (88)
308 1x4e_A RNA binding motif, sing 99.2 2E-12 6.8E-17 88.2 2.6 66 44-126 3-70 (85)
309 2ad9_A Polypyrimidine tract-bi 99.2 5.8E-12 2E-16 91.3 5.1 59 42-122 27-85 (119)
310 1uaw_A Mouse-musashi-1; RNP-ty 99.2 1.9E-12 6.6E-17 86.5 2.3 59 48-123 2-61 (77)
311 2fc9_A NCL protein; structure 99.2 2.9E-12 9.9E-17 90.4 3.3 65 42-126 11-76 (101)
312 3n9u_C Cleavage and polyadenyl 99.2 4.1E-12 1.4E-16 96.9 4.3 65 45-126 54-122 (156)
313 3ex7_B RNA-binding protein 8A; 99.2 3.9E-12 1.3E-16 93.5 4.0 68 42-126 18-87 (126)
314 3r27_A HnRNP L, heterogeneous 99.2 1.3E-11 4.3E-16 86.5 5.4 57 44-122 19-75 (100)
315 2e5j_A Methenyltetrahydrofolat 99.2 1.9E-11 6.4E-16 85.6 6.1 64 42-126 15-79 (97)
316 2kn4_A Immunoglobulin G-bindin 99.2 1.5E-11 5E-16 93.9 6.0 67 43-126 67-135 (158)
317 1h2v_Z 20 kDa nuclear CAP bind 99.2 7.8E-12 2.7E-16 95.3 4.3 68 42-126 35-104 (156)
318 3q2s_C Cleavage and polyadenyl 99.2 5.5E-12 1.9E-16 102.3 3.6 65 45-126 67-135 (229)
319 2jvo_A Nucleolar protein 3; nu 99.2 7.8E-12 2.7E-16 89.4 3.9 63 40-126 25-88 (108)
320 1wex_A Hypothetical protein (r 99.2 1.2E-11 4.2E-16 87.7 4.8 59 42-122 11-69 (104)
321 1x4c_A Splicing factor, argini 99.2 1.2E-11 4E-16 88.5 4.7 62 43-127 12-74 (108)
322 2ki2_A SS-DNA binding protein 99.2 5.2E-12 1.8E-16 87.1 2.4 62 47-126 2-65 (90)
323 2ytc_A PRE-mRNA-splicing facto 99.2 1.9E-11 6.6E-16 83.2 5.1 63 42-126 8-72 (85)
324 2f3j_A RNA and export factor b 99.2 1.6E-11 5.5E-16 95.6 4.9 65 45-126 87-152 (177)
325 2dnl_A Cytoplasmic polyadenyla 99.2 7.6E-12 2.6E-16 90.3 2.9 61 44-122 6-70 (114)
326 2cpi_A CCR4-NOT transcription 99.2 4.7E-12 1.6E-16 91.0 1.6 68 42-126 11-86 (111)
327 1why_A Hypothetical protein ri 99.2 1.9E-11 6.4E-16 85.5 4.7 63 42-126 13-76 (97)
328 2dnp_A RNA-binding protein 14; 99.2 2.4E-11 8.2E-16 83.8 5.1 61 42-126 5-66 (90)
329 2e5g_A U6 snRNA-specific termi 99.2 3.8E-11 1.3E-15 83.5 6.1 65 42-127 4-68 (94)
330 1ufw_A Synaptojanin 2; RNP dom 99.2 2.5E-11 8.6E-16 82.8 4.9 73 164-245 13-94 (95)
331 3ns6_A Eukaryotic translation 99.2 1.2E-11 4.1E-16 87.1 3.5 68 46-126 6-77 (100)
332 2dgu_A Heterogeneous nuclear r 99.2 2.6E-11 8.9E-16 85.8 5.2 59 44-126 9-68 (103)
333 2dnq_A RNA-binding protein 4B; 99.2 3.5E-11 1.2E-15 82.9 5.6 61 42-126 4-65 (90)
334 2cq2_A Hypothetical protein LO 99.2 2E-11 7E-16 87.6 4.5 59 46-126 25-86 (114)
335 2lcw_A RNA-binding protein FUS 98.8 3E-12 1E-16 92.7 0.0 67 43-126 4-80 (116)
336 2la4_A Nuclear and cytoplasmic 99.1 2.6E-11 8.8E-16 85.5 4.5 62 43-126 24-86 (101)
337 3dxb_A Thioredoxin N-terminall 99.1 9.8E-11 3.4E-15 94.4 8.5 67 179-245 142-212 (222)
338 1fjc_A Nucleolin RBD2, protein 99.1 1.1E-11 3.6E-16 86.6 2.0 64 42-126 12-76 (96)
339 2cpj_A Non-POU domain-containi 99.1 2E-11 6.8E-16 85.7 3.4 63 42-126 11-74 (99)
340 2hzc_A Splicing factor U2AF 65 99.1 3.8E-11 1.3E-15 82.1 4.7 66 44-127 4-76 (87)
341 1rk8_A CG8781-PA, CG8781-PA pr 99.1 2.3E-11 7.9E-16 93.6 3.7 66 44-126 70-137 (165)
342 1wf0_A TDP-43, TAR DNA-binding 99.1 1.2E-11 4.1E-16 85.0 1.8 57 45-122 4-60 (88)
343 2voo_A Lupus LA protein; RNA-b 99.1 1.8E-11 6.2E-16 96.7 3.0 63 46-125 109-171 (193)
344 1wf1_A RNA-binding protein RAL 99.1 3.6E-11 1.2E-15 86.1 4.4 61 42-126 23-85 (110)
345 1nu4_A U1A RNA binding domain; 99.1 9.4E-12 3.2E-16 87.0 1.1 64 44-126 6-74 (97)
346 1x4g_A Nucleolysin TIAR; struc 99.1 4E-11 1.4E-15 85.7 4.4 62 43-126 22-84 (109)
347 2i2y_A Fusion protein consists 99.1 5.7E-11 1.9E-15 89.9 5.4 64 42-126 69-133 (150)
348 2dgt_A RNA-binding protein 30; 99.1 5.1E-11 1.7E-15 82.5 4.4 61 42-126 6-67 (92)
349 2cqh_A IGF-II mRNA-binding pro 99.1 4.5E-11 1.6E-15 82.9 4.1 61 42-125 4-66 (93)
350 2fc8_A NCL protein; structure 99.1 4.5E-11 1.5E-15 84.3 4.1 65 42-126 11-77 (102)
351 1x4d_A Matrin 3; structural ge 99.1 4.1E-11 1.4E-15 84.5 3.6 60 42-122 11-70 (102)
352 3egn_A RNA-binding protein 40; 99.1 3.9E-11 1.3E-15 90.0 3.3 68 43-127 42-116 (143)
353 2cpd_A Apobec-1 stimulating pr 99.1 1.2E-10 4.1E-15 81.7 5.5 61 42-126 11-74 (99)
354 3beg_B Splicing factor, argini 99.1 1.9E-11 6.5E-16 88.4 1.2 60 44-126 14-74 (115)
355 2xnq_A Nuclear polyadenylated 99.1 5.6E-11 1.9E-15 83.2 3.3 61 42-126 18-80 (97)
356 1whx_A Hypothetical protein ri 99.1 4.3E-11 1.5E-15 85.9 2.6 61 44-126 8-69 (111)
357 3pgw_S U1-70K; protein-RNA com 99.1 2.4E-10 8.1E-15 101.1 7.5 65 45-126 101-167 (437)
358 1sjr_A Polypyrimidine tract-bi 99.0 3.1E-10 1.1E-14 86.4 6.2 60 47-126 47-107 (164)
359 1wg1_A KIAA1579 protein, homol 99.0 8.1E-11 2.8E-15 80.8 2.8 59 45-126 4-63 (88)
360 2kvi_A Nuclear polyadenylated 99.0 1.3E-10 4.3E-15 81.1 3.3 60 43-126 7-68 (96)
361 1x5p_A Negative elongation fac 99.0 5.4E-10 1.8E-14 78.0 4.8 61 42-126 11-72 (97)
362 2e5i_A Heterogeneous nuclear r 98.9 7.9E-10 2.7E-14 80.6 5.0 55 51-126 29-85 (124)
363 2e44_A Insulin-like growth fac 98.9 7.4E-10 2.5E-14 77.1 4.3 65 42-126 11-77 (96)
364 2j8a_A Histone-lysine N-methyl 98.9 3.9E-10 1.3E-14 81.7 2.2 49 48-113 4-57 (136)
365 2l9w_A U4/U6 snRNA-associated- 98.9 1.3E-08 4.5E-13 70.8 9.3 72 165-242 20-96 (117)
366 3zzy_A Polypyrimidine tract-bi 98.9 9.6E-10 3.3E-14 80.6 3.2 60 47-127 29-90 (130)
367 2bz2_A Negative elongation fac 98.9 1.1E-09 3.8E-14 79.7 3.4 61 42-126 35-96 (121)
368 2diu_A KIAA0430 protein; struc 98.8 7.4E-09 2.5E-13 70.9 7.0 56 46-126 8-69 (96)
369 1jmt_A Splicing factor U2AF 35 98.8 4.4E-10 1.5E-14 79.6 0.4 58 69-126 26-91 (104)
370 2d9o_A DNAJ (HSP40) homolog, s 98.8 7.1E-09 2.4E-13 72.7 6.2 46 68-122 27-72 (100)
371 3u1l_A PRE-mRNA-splicing facto 98.8 1.9E-09 6.6E-14 87.3 3.3 64 42-127 130-203 (240)
372 2dit_A HIV TAT specific factor 98.8 4.5E-09 1.5E-13 75.4 4.9 72 39-126 8-87 (112)
373 3tht_A Alkylated DNA repair pr 98.8 2.6E-09 8.8E-14 91.1 4.0 65 42-128 14-81 (345)
374 2pe8_A Splicing factor 45; RRM 98.8 2.4E-09 8E-14 75.9 3.0 70 45-127 7-80 (105)
375 3v4m_A Splicing factor U2AF 65 98.6 3.8E-08 1.3E-12 69.7 4.7 50 72-126 29-82 (105)
376 3ue2_A Poly(U)-binding-splicin 98.4 2E-07 7E-12 67.2 4.2 51 71-126 38-94 (118)
377 1wey_A Calcipressin 1; structu 98.2 7.2E-06 2.5E-10 56.8 7.3 76 166-247 5-85 (104)
378 3s6e_A RNA-binding protein 39; 98.1 6.5E-07 2.2E-11 64.1 1.6 46 73-126 32-78 (114)
379 2dhx_A Poly (ADP-ribose) polym 97.9 0.00012 4.2E-09 50.4 9.9 73 165-246 7-84 (104)
380 2dnr_A Synaptojanin-1; RRM dom 97.8 1.7E-05 6E-10 53.7 3.4 43 73-127 30-72 (91)
381 1owx_A Lupus LA protein, SS-B, 97.7 1E-05 3.5E-10 58.2 2.0 55 47-123 19-76 (121)
382 1whv_A Poly(A)-specific ribonu 97.7 0.00016 5.6E-09 49.2 7.3 56 165-229 15-70 (100)
383 1uw4_A UPF3X; nonsense mediate 97.7 0.00026 9E-09 48.1 8.0 78 167-244 2-86 (91)
384 3dxb_A Thioredoxin N-terminall 97.5 5E-05 1.7E-09 60.6 3.1 51 71-126 142-198 (222)
385 1ufw_A Synaptojanin 2; RNP dom 97.5 5.4E-05 1.9E-09 51.5 2.5 42 73-126 39-80 (95)
386 3ctr_A Poly(A)-specific ribonu 97.5 0.0002 6.8E-09 48.9 5.2 55 166-229 6-60 (101)
387 1wwh_A Nucleoporin 35, nucleop 97.4 0.002 6.9E-08 45.7 9.9 74 163-244 21-95 (119)
388 2l08_A Regulator of nonsense t 96.7 0.002 6.8E-08 44.0 4.4 79 166-244 9-94 (97)
389 2dhx_A Poly (ADP-ribose) polym 96.6 0.0026 9E-08 43.8 4.6 54 52-123 13-66 (104)
390 3p3d_A Nucleoporin 53; structu 96.4 0.0062 2.1E-07 43.9 5.5 77 166-244 7-97 (132)
391 3pq1_A Poly(A) RNA polymerase; 96.4 0.0018 6.3E-08 57.0 3.3 56 165-226 52-107 (464)
392 2l9w_A U4/U6 snRNA-associated- 96.1 0.012 4.3E-07 40.9 5.5 66 55-127 20-86 (117)
393 1wwh_A Nucleoporin 35, nucleop 92.8 0.27 9.4E-06 34.7 5.9 59 56-127 24-82 (119)
394 3d45_A Poly(A)-specific ribonu 92.6 0.4 1.4E-05 42.9 8.3 56 166-230 440-495 (507)
395 1whv_A Poly(A)-specific ribonu 92.1 0.53 1.8E-05 31.9 6.3 42 69-122 26-67 (100)
396 3pq1_A Poly(A) RNA polymerase; 89.2 0.14 4.7E-06 45.2 1.8 47 69-124 63-109 (464)
397 3p3d_A Nucleoporin 53; structu 85.7 1.4 4.9E-05 31.6 5.0 67 53-127 4-85 (132)
398 3ctr_A Poly(A)-specific ribonu 81.5 1.1 3.7E-05 30.5 2.8 49 60-122 9-57 (101)
399 2g0c_A ATP-dependent RNA helic 77.7 6.1 0.00021 25.0 5.5 68 168-244 2-75 (76)
400 1wey_A Calcipressin 1; structu 70.2 14 0.00048 25.2 6.0 65 54-126 3-69 (104)
401 4e8u_A Putative uncharacterize 55.0 27 0.00094 26.1 5.6 57 166-225 12-80 (172)
402 3mfb_A Uncharacterized protein 40.6 52 0.0018 24.2 5.1 37 178-214 3-42 (157)
403 2e5q_A PHD finger protein 19; 35.1 12 0.0004 22.8 0.7 12 103-114 34-45 (63)
404 4eyt_A Telomerase associated p 31.6 1.1E+02 0.0038 20.1 7.6 55 166-228 12-66 (129)
405 2lfv_A Protein DAMX; cell divi 34.5 12 0.00042 25.6 0.0 60 166-230 25-86 (106)
406 2e5p_A Protein PHF1, PHD finge 26.7 16 0.00054 22.6 0.3 13 102-114 35-47 (68)
407 2hiq_A Hypothetical protein YD 26.1 1.6E+02 0.0055 20.2 5.5 64 59-124 11-76 (113)
408 2i9x_A Putative septation prot 26.0 1.1E+02 0.0036 20.0 4.3 26 192-217 5-30 (87)
409 2ia9_A Putative septation prot 22.4 1.3E+02 0.0045 20.2 4.3 26 192-217 5-30 (100)
410 3d45_A Poly(A)-specific ribonu 22.0 86 0.003 27.7 4.3 46 62-121 445-490 (507)
411 3u7d_B Protein HEG homolog 1; 21.4 28 0.00096 16.6 0.5 11 2-12 5-15 (26)
412 2i9z_A Putative septation prot 21.1 1.5E+02 0.005 20.1 4.3 26 192-217 5-30 (105)
No 1
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=5.2e-34 Score=227.06 Aligned_cols=176 Identities=20% Similarity=0.290 Sum_probs=137.0
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHHHH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQEL 120 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a 120 (255)
.+..+++|| |+|||. ++|+++|.++|.++ |.|.+|+++.+ .+|.++|||||+|.++++|++|
T Consensus 9 ~~~~~~~l~-V~nLp~-----------~~te~~l~~~F~~~-----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A 71 (196)
T 1l3k_A 9 EPEQLRKLF-IGGLSF-----------ETTDESLRSHFEQW-----GTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71 (196)
T ss_dssp CCGGGGEEE-EESCCT-----------TCCHHHHHHHHGGG-----SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH
T ss_pred CCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhC-----CCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHH
Confidence 456677888 999999 99999999999954 99999999875 4688999999999999999999
Q ss_pred hCCCCCce-ecCCCCCCCCCcCCCCCCCCCCcCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEE
Q 025313 121 TGVPGVLS-VQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKII 199 (255)
Q Consensus 121 ~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~ 199 (255)
+..++... .+.......... ............++|||+|||+.+++++|+++|++||.|..+.++
T Consensus 72 ~~~~~~~~~g~~l~v~~~~~~--------------~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~ 137 (196)
T 1l3k_A 72 MNARPHKVDGRVVEPKRAVSR--------------EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIM 137 (196)
T ss_dssp HHTCSCEETTEECEEEECCC-------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEE
T ss_pred HhcCCCEECCEEeeeecccCc--------------ccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe
Confidence 88765421 010000000000 000011223446899999999999999999999999999999999
Q ss_pred ecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCCCCC
Q 025313 200 MDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPKY 249 (255)
Q Consensus 200 ~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~~~~~ 249 (255)
.+..+|.++|||||+|.+.++|.+|+.. +|..++|+.|.|.++.++...
T Consensus 138 ~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 138 TDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp ECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC-----
T ss_pred ecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHh
Confidence 9998999999999999999999999965 899999999999999887533
No 2
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.5e-34 Score=219.63 Aligned_cols=164 Identities=21% Similarity=0.325 Sum_probs=135.9
Q ss_pred cccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh-CCCCC
Q 025313 48 LLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT-GVPGV 126 (255)
Q Consensus 48 ~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~-~~~g~ 126 (255)
++| |+|||. ++|+++|.++|.++ |.|.+|+++.+..++++|||||+|.+.++|++|+ .++|.
T Consensus 2 ~l~-V~nlp~-----------~~t~~~l~~~f~~~-----G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~ 64 (166)
T 3md3_A 2 VLY-VGNLDK-----------AITEDILKQYFQVG-----GPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGK 64 (166)
T ss_dssp EEE-EEEEET-----------TCCHHHHHHHHGGG-----SCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred EEE-ECCCCC-----------cCCHHHHHHHHHhc-----CCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCC
Confidence 566 888888 99999999999954 9999999998888999999999999999998887 67775
Q ss_pred ceecCCCCCCCCCcCCCCCCCCCCcCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCC
Q 025313 127 LSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKR 206 (255)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~ 206 (255)
... +..+........ ......+..+|||+|||..+++++|+++|++||.|..+.++.+..+|.
T Consensus 65 ~~~--------------g~~i~v~~~~~~---~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~ 127 (166)
T 3md3_A 65 QIE--------------NNIVKINWAFQS---QQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGS 127 (166)
T ss_dssp EET--------------TEECEEEECCCC---CCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCC
T ss_pred ccC--------------CCeeEEEEcCCC---CCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCC
Confidence 320 111100000000 012234578999999999999999999999999999999999988999
Q ss_pred cceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecC
Q 025313 207 SKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKT 245 (255)
Q Consensus 207 ~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~ 245 (255)
++|+|||+|.+.++|.+|+..|||..++|++|+|.||+.
T Consensus 128 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 128 SRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred cceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 999999999999999999999999999999999999863
No 3
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=7.2e-33 Score=220.76 Aligned_cols=187 Identities=19% Similarity=0.249 Sum_probs=139.4
Q ss_pred CcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCcccc------ceEEeecCCccceEEeeeCCHHHHH
Q 025313 45 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDA------QMCIYHVSWQSNFGFCCELDDECAQ 118 (255)
Q Consensus 45 ~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v------~i~~~~~~~~~g~aFV~f~~~e~a~ 118 (255)
.+++|| |+|||. ++|+++|.++|.++ |.|..+ .+.....++++|||||+|.++++|+
T Consensus 3 ~~~~l~-V~nLp~-----------~~te~~l~~~F~~~-----g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~ 65 (198)
T 2yh0_A 3 MARRLY-VGNIPF-----------GITEEAMMDFFNAQ-----MRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETT 65 (198)
T ss_dssp -CCEEE-EESCCT-----------TCCHHHHHHHHHHH-----HHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHH
T ss_pred ceeEEE-EcCCCC-----------CCCHHHHHHHHHHH-----HhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHH
Confidence 356788 999999 99999999999976 766554 3444566888999999999999998
Q ss_pred HHhCCCCCcee-cCCCCCCCCCcCCCCCCCCCCcCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEE
Q 025313 119 ELTGVPGVLSV-QPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVK 197 (255)
Q Consensus 119 ~a~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~ 197 (255)
+|+.++|.... ++.................................+.++|||+|||+.+++++|+++|++||.|..+.
T Consensus 66 ~Al~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~ 145 (198)
T 2yh0_A 66 QAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFN 145 (198)
T ss_dssp HHGGGTTEEETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEE
T ss_pred HHHHhcCCEEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEE
Confidence 88888875311 11110000000000000000000000111122335679999999999999999999999999999999
Q ss_pred EEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCCCC
Q 025313 198 IIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPK 248 (255)
Q Consensus 198 i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~~~~ 248 (255)
+..++.+|.++|||||+|.+.++|.+|++.|||..++|++|+|.++.++.+
T Consensus 146 ~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 146 LVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred EeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 999988999999999999999999999999999999999999999987654
No 4
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=1.2e-33 Score=228.38 Aligned_cols=168 Identities=21% Similarity=0.348 Sum_probs=133.6
Q ss_pred CCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHHHHh
Q 025313 43 QIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 43 ~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
....++|| |||||+ ++|+++|.++|.++ |.|.+|+|+.+ .+++++|||||+|.+.++|++|+
T Consensus 12 ~~p~~tlf-VgnLp~-----------~~te~~L~~~F~~~-----G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai 74 (213)
T 4f02_A 12 SYPMASLY-VGDLHP-----------DVTEAMLYEKFSPA-----GPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 74 (213)
T ss_dssp ---CCEEE-EESCCT-----------TCCHHHHHHHHGGG-----SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred CCCCcEEE-EeCCCC-----------CCCHHHHHHHHHhh-----CCEEEEEEecccCCCCccccccceeCCHHHHHHHH
Confidence 33456788 999999 99999999999954 99999999874 57999999999999999997776
Q ss_pred C-CCCCceecCCCCCCCCCcCCCCCCCCCCcCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEe
Q 025313 122 G-VPGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIM 200 (255)
Q Consensus 122 ~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~ 200 (255)
. ++|.... +..+...... ...........+|||+|||+.+++++|+++|++||.|..++|++
T Consensus 75 ~~~~~~~~~--------------g~~i~~~~~~---~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~ 137 (213)
T 4f02_A 75 DTMNFDVIK--------------GKPVRIMWSQ---RDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 137 (213)
T ss_dssp HHHTTCEET--------------TEECEEEECC---CCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred HHhhhhhcC--------------Cccccccccc---ccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeec
Confidence 4 4654310 0000000000 00011122357899999999999999999999999999999999
Q ss_pred cCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCC
Q 025313 201 DKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTT 246 (255)
Q Consensus 201 d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~~ 246 (255)
|. +.++|||||+|.+.++|++|++.|||..|+|++|+|.+|+++
T Consensus 138 d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 138 DE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp ET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred cC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 85 558999999999999999999999999999999999999864
No 5
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=2e-32 Score=213.49 Aligned_cols=164 Identities=21% Similarity=0.332 Sum_probs=132.2
Q ss_pred CcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCcccc------ceEEeecCCccceEEeeeCCHHHHH
Q 025313 45 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDA------QMCIYHVSWQSNFGFCCELDDECAQ 118 (255)
Q Consensus 45 ~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v------~i~~~~~~~~~g~aFV~f~~~e~a~ 118 (255)
.++++| |+|||. ++|+++|.++|.++ |.|..+ .+.....++++|||||+|.++++|+
T Consensus 3 ~~~~l~-V~nLp~-----------~~t~~~l~~~F~~~-----g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~ 65 (172)
T 2g4b_A 3 SARRLY-VGNIPF-----------GITEEAMMDFFNAQ-----MRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETT 65 (172)
T ss_dssp GGGEEE-EESCCT-----------TCCHHHHHHHHHHH-----HHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHH
T ss_pred cccEEE-EcCCCc-----------ccCHHHHHHHHHHH-----hhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHH
Confidence 456788 999999 99999999999966 554432 3334456778999999999999998
Q ss_pred HHhCCCCCceecCCCCCCCCCcCCCCCCCCCCcCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEE
Q 025313 119 ELTGVPGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKI 198 (255)
Q Consensus 119 ~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i 198 (255)
+|+.++|.... +..+.... ...........+|||+|||+.+++++|+++|++||.|..+.+
T Consensus 66 ~A~~~~~~~~~--------------g~~i~v~~-----~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i 126 (172)
T 2g4b_A 66 QAMAFDGIIFQ--------------GQSLKIRR-----PHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 126 (172)
T ss_dssp HHGGGTTCEET--------------TEECEEEC-----CSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEE
T ss_pred HHHHhCCcEec--------------CceeeecC-----CcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEE
Confidence 88888875420 00000000 000111233788999999999999999999999999999999
Q ss_pred EecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 025313 199 IMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 244 (255)
Q Consensus 199 ~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~ 244 (255)
.+++.+|.++|||||+|.+.++|.+|++.|||..++|++|+|.+|.
T Consensus 127 ~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 127 VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp EECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 9998899999999999999999999999999999999999999973
No 6
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=8e-34 Score=220.34 Aligned_cols=164 Identities=18% Similarity=0.322 Sum_probs=135.3
Q ss_pred CcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHHHHhCC
Q 025313 45 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELTGV 123 (255)
Q Consensus 45 ~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a~~~ 123 (255)
.++++| |+|||. ++|+++|.++|.++ |.|.+|+++.+ .+|+++|||||+|.++++|++|+..
T Consensus 2 ~~~~l~-v~nLp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 64 (167)
T 2cjk_A 2 ESCKMF-IGGLNW-----------DTTEDNLREYFGKY-----GTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 64 (167)
T ss_dssp GGGEEE-ECSCCT-----------TCCHHHHHHHHTTT-----CCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS
T ss_pred CCcEEE-EeCCCC-----------CCCHHHHHHHHHhC-----CCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc
Confidence 356788 999999 99999999999954 99999998875 5799999999999999999888762
Q ss_pred CCCceecCCCCCCCCCcCCCCCCCCCCcCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCC
Q 025313 124 PGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKI 203 (255)
Q Consensus 124 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~ 203 (255)
...+ .+..+.... ........+..+|||+|||+.+++++|+++|++||.|.++.++.++.
T Consensus 65 ~~~~---------------~g~~i~v~~-----~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~ 124 (167)
T 2cjk_A 65 QHIL---------------DGKVIDPKR-----AIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKD 124 (167)
T ss_dssp CCEE---------------TTEECCCEE-----CCCHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSS
T ss_pred cccc---------------CCeEccccc-----ccchhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCC
Confidence 1111 111111100 00111223467999999999999999999999999999999999988
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCC
Q 025313 204 SKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTT 246 (255)
Q Consensus 204 ~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~~ 246 (255)
+|.++|||||+|.+.++|.+|++ ++|..++|++|+|.+|.++
T Consensus 125 ~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 125 TGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp SSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred CCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 99999999999999999999996 8999999999999999875
No 7
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=1.2e-32 Score=213.38 Aligned_cols=162 Identities=22% Similarity=0.393 Sum_probs=134.1
Q ss_pred cccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEee-cCCccceEEeeeCCHHHHHHHhC-C
Q 025313 46 TTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYH-VSWQSNFGFCCELDDECAQELTG-V 123 (255)
Q Consensus 46 s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~-~~~~~g~aFV~f~~~e~a~~a~~-~ 123 (255)
++++| |+|||. ++|+++|.++|.++ |.|.+++++.+. +|+++|||||+|.++++|++|+. +
T Consensus 2 ~~~l~-v~nlp~-----------~~~~~~l~~~f~~~-----G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l 64 (167)
T 1fxl_A 2 KTNLI-VNYLPQ-----------NMTQEEFRSLFGSI-----GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 64 (167)
T ss_dssp CSEEE-EESCCT-----------TCCHHHHHHHHHTT-----SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred cceEE-EcCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHc
Confidence 45677 999999 99999999999955 999999998865 89999999999999999988875 6
Q ss_pred CCCceecCCCCCCCCCcCCCCCCCCCCcCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCC
Q 025313 124 PGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKI 203 (255)
Q Consensus 124 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~ 203 (255)
+|... .+..+...... .........+|||+|||..+++++|+++|++||.|..+++..+..
T Consensus 65 ~~~~~--------------~g~~l~v~~~~-----~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~ 125 (167)
T 1fxl_A 65 NGLRL--------------QTKTIKVSYAR-----PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV 125 (167)
T ss_dssp TTCEE--------------TTEECEEEECC-----CCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT
T ss_pred CCCcc--------------CCceEEEEecC-----CCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCC
Confidence 76432 01111100000 111233468899999999999999999999999999999999998
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEE--EEEEEe
Q 025313 204 SKRSKGYAFIEYTTEEAASAALKEMNGKIINGWM--IVVDVA 243 (255)
Q Consensus 204 ~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~--l~V~~a 243 (255)
+|.++|||||+|.+.++|.+|++.|||..+.|+. |+|.||
T Consensus 126 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 126 TGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 9999999999999999999999999999999964 888886
No 8
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=1.2e-32 Score=213.83 Aligned_cols=162 Identities=22% Similarity=0.356 Sum_probs=134.9
Q ss_pred cccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHHHHhC-C
Q 025313 46 TTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELTG-V 123 (255)
Q Consensus 46 s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a~~-~ 123 (255)
++++| |+|||. ++|+++|.++|.++ |.|.+++++.+ .+|+++|||||+|.++++|++|++ +
T Consensus 3 ~~~l~-v~nlp~-----------~~~~~~l~~~f~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l 65 (168)
T 1b7f_A 3 NTNLI-VNYLPQ-----------DMTDRELYALFRAI-----GPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVL 65 (168)
T ss_dssp CSEEE-EECCCT-----------TCCHHHHHHHHHTT-----SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHH
T ss_pred ccEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhc
Confidence 45677 999999 99999999999955 99999998875 578999999999999999988875 6
Q ss_pred CCCceecCCCCCCCCCcCCCCCCCCCCcCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCC
Q 025313 124 PGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKI 203 (255)
Q Consensus 124 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~ 203 (255)
+|... .+..+...... ......+..+|||+|||..+++++|+++|++||.|..+.++++..
T Consensus 66 ~~~~~--------------~g~~l~v~~~~-----~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~ 126 (168)
T 1b7f_A 66 NGITV--------------RNKRLKVSYAR-----PGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKL 126 (168)
T ss_dssp TTCEE--------------TTEECEEEECC-----CCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTT
T ss_pred CCCEe--------------CCcEEEEEecC-----CCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCC
Confidence 76532 01111111100 011234478999999999999999999999999999999999998
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHhCCceeCC--EEEEEEEe
Q 025313 204 SKRSKGYAFIEYTTEEAASAALKEMNGKIING--WMIVVDVA 243 (255)
Q Consensus 204 ~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g--~~l~V~~a 243 (255)
+|.++|+|||+|.+.++|.+|++.|||..+.| ++|+|.||
T Consensus 127 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 127 TGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 99999999999999999999999999999987 99999986
No 9
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.98 E-value=3.6e-32 Score=219.56 Aligned_cols=173 Identities=21% Similarity=0.312 Sum_probs=138.6
Q ss_pred CCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEee-cCCccceEEeeeCCHHHHHHHhC
Q 025313 44 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYH-VSWQSNFGFCCELDDECAQELTG 122 (255)
Q Consensus 44 ~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~-~~~~~g~aFV~f~~~e~a~~a~~ 122 (255)
..+++|| |+|||. ++|+++|.++|.++ |.|.+|+++.+. +|+++|||||+|.+.++|++|++
T Consensus 26 ~~~~~l~-V~nLp~-----------~~t~~~l~~~f~~~-----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 88 (216)
T 2qfj_A 26 AIMSRVY-VGSIYY-----------ELGEDTIRQAFAPF-----GPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALE 88 (216)
T ss_dssp HHHTEEE-EECCCT-----------TCCHHHHHHHHGGG-----SCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHH
T ss_pred CcCCEEE-EECCCC-----------CCCHHHHHHHHHhC-----CCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHH
Confidence 3456788 999999 99999999999955 999999988754 88999999999999999988876
Q ss_pred -CCCCceecCCCCCCCCCcCCCCCCCCCCcCCCCCC------CCCCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEE
Q 025313 123 -VPGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSS------EASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVE 195 (255)
Q Consensus 123 -~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~ 195 (255)
++|... .+..+.......... .........++|||+|||..+++++|+++|++||.|..
T Consensus 89 ~l~~~~~--------------~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~ 154 (216)
T 2qfj_A 89 QMNSVML--------------GGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKS 154 (216)
T ss_dssp HHSSCCC--------------C-CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEE
T ss_pred HccCCee--------------CCeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeE
Confidence 676431 111110000000000 00011234689999999999999999999999999999
Q ss_pred EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCCC
Q 025313 196 VKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTP 247 (255)
Q Consensus 196 v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~~~ 247 (255)
+++..++.+|.++|||||+|.+.++|.+|++.|||..|+|++|+|.++.+++
T Consensus 155 v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 155 ATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCS
T ss_pred EEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCC
Confidence 9999999899999999999999999999999999999999999999998775
No 10
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.98 E-value=4e-32 Score=212.08 Aligned_cols=167 Identities=19% Similarity=0.277 Sum_probs=133.5
Q ss_pred CcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecC---CccceEEeeeCCHHHHHHHh
Q 025313 45 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVS---WQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 45 ~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~---~~~g~aFV~f~~~e~a~~a~ 121 (255)
.+++|| |+|||. ++|+++|.++|.++ |.|.+++++.+..+ +++|||||+|.++++|++|+
T Consensus 2 ~~~~l~-V~nLp~-----------~~te~~l~~~F~~~-----G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~ 64 (175)
T 3nmr_A 2 DAIKMF-VGQVPR-----------TWSEKDLRELFEQY-----GAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 64 (175)
T ss_dssp CCEEEE-EESCCT-----------TCCHHHHHHHHHTT-----SCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHH
T ss_pred CceEEE-EeCCCC-----------CCCHHHHHHHHHhC-----CCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHH
Confidence 456788 999999 99999999999955 99999999886655 79999999999999997776
Q ss_pred C-CCCCceecCCCCCCCCCcCCCCCCCCCCcCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEe
Q 025313 122 G-VPGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIM 200 (255)
Q Consensus 122 ~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~ 200 (255)
. ++|...... .+..+...... .........++|||+|||+.+++++|+++|++||.|..+.+++
T Consensus 65 ~~l~~~~~~~~-----------~~~~~~~~~~~----~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~ 129 (175)
T 3nmr_A 65 NALHNMKVLPG-----------MHHPIQMKPAD----SEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILR 129 (175)
T ss_dssp HHHTTTCCCTT-----------CSSCCEEEECG----GGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred HHhcCcEEccC-----------CccceEEcccc----ccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEE
Confidence 4 566432100 00000000000 0012234578999999999999999999999999999999999
Q ss_pred cCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC---CEEEEEEEec
Q 025313 201 DKISKRSKGYAFIEYTTEEAASAALKEMNGKIIN---GWMIVVDVAK 244 (255)
Q Consensus 201 d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~---g~~l~V~~a~ 244 (255)
+. +|.++|||||+|.+.++|.+|++.|||..+. |++|+|.||.
T Consensus 130 ~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 130 GP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp CT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred CC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 97 6999999999999999999999999998776 4999999974
No 11
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.98 E-value=3.9e-32 Score=212.58 Aligned_cols=167 Identities=21% Similarity=0.266 Sum_probs=135.0
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
.+..++++| |+|||. ++|+++|+++|.++ |.+..+.+....+|.++|||||+|.++++|++|+
T Consensus 9 ~~~~~~~l~-V~nLp~-----------~~t~~~l~~~f~~~-----g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~ 71 (175)
T 1fje_B 9 ESTTPFNLF-IGNLNP-----------NKSVAELKVAISEL-----FAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL 71 (175)
T ss_dssp SCSSSEEEE-EECCCT-----------TSCHHHHHHHHHHH-----HHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH
T ss_pred CCCCCcEEE-EeCCCC-----------CCCHHHHHHHHHHh-----CCcceEEEEECCCCccccEEEEEECCHHHHHHHH
Confidence 456677788 999999 99999999999976 7777766666788999999999999999998888
Q ss_pred CCCCCceecCCCCCCCCCcCCCCCCCCCCcCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEec
Q 025313 122 GVPGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMD 201 (255)
Q Consensus 122 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d 201 (255)
+++|.... +..+........ ........++|||+|||+.+++++|+++|++||.|..+
T Consensus 72 ~l~g~~~~--------------g~~l~v~~~~~~---~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----- 129 (175)
T 1fje_B 72 ELTGLKVF--------------GNEIKLEKPKGR---DSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----- 129 (175)
T ss_dssp HGGGEEET--------------TEEEEEECCCCS---SCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----
T ss_pred hcCCCEeC--------------CeEEEEecCCCc---cccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----
Confidence 88875321 110100000000 11223457899999999999999999999999988766
Q ss_pred CCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCCC
Q 025313 202 KISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTP 247 (255)
Q Consensus 202 ~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~~~ 247 (255)
..+|.++|||||+|.+.++|.+|++.|||..++|++|+|.||.+++
T Consensus 130 ~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k~ 175 (175)
T 1fje_B 130 SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 175 (175)
T ss_dssp CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSCC
T ss_pred cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCCC
Confidence 4489999999999999999999999999999999999999998753
No 12
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=7.7e-31 Score=221.54 Aligned_cols=207 Identities=17% Similarity=0.206 Sum_probs=147.4
Q ss_pred CCcceeeeecChHhHHHhhccccCCcCCCCCCCCCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhC
Q 025313 9 DTHFGFCCNVDEETSRELAHYSCLDIQMSNPWNSQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLG 88 (255)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G 88 (255)
++.+.|..-.+++.....-.............-....++++| |+|||. ++|+++|.++|.++ |
T Consensus 80 ~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~~~~l~-v~nlp~-----------~~t~~~l~~~f~~~-----G 142 (292)
T 2ghp_A 80 NFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHLTECTLW-MTNFPP-----------SYTQRNIRDLLQDI-----N 142 (292)
T ss_dssp SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEECCSCEEE-EECCCT-----------TCCHHHHHHHHHHT-----T
T ss_pred CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEECCCCEEE-EECCCC-----------CCCHHHHHHHHHHh-----C
Confidence 467777777777776655533211111111111234566778 999999 99999999999955 9
Q ss_pred -CccccceEEeecCCccceEEeeeCCHHHHHHHhC-CCCCcee-cCCCCCCCCCcCCCCCCCCCCcCCCCCCCC-CCCCC
Q 025313 89 -NEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG-VPGVLSV-QPDENFGSENKDYGGNNLQNSMVPSDSSEA-SPTQI 164 (255)
Q Consensus 89 -~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~-~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 164 (255)
.|.+++++.+..|.++|||||+|.+.++|++|+. |+|.... +........ +...... .....
T Consensus 143 ~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~--------------~~~~~~~~~~~~~ 208 (292)
T 2ghp_A 143 VVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN--------------PLEKSKRTDSATL 208 (292)
T ss_dssp CCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC--------------CC---------CC
T ss_pred CCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC--------------CCcccccccccCC
Confidence 9999999887779999999999999999988877 7775321 100000000 0000000 12334
Q ss_pred ccceEEEcCCCCC-CCHHHHHHHHhcCCCEEEEEEEecCC-CCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 025313 165 KTKKLFVTGLSFY-TSEKTLRAAFEGFGELVEVKIIMDKI-SKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 242 (255)
Q Consensus 165 ~~~~l~V~nLp~~-~t~~~L~~~F~~fG~i~~v~i~~d~~-~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~ 242 (255)
+.++|||+|||+. +++++|+++|++||.|..++++.+.. +|.++|||||+|.+.++|.+|+ .|||..|+|++|+|.|
T Consensus 209 ~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~ 287 (292)
T 2ghp_A 209 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSL 287 (292)
T ss_dssp TTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEE
T ss_pred CCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEE
Confidence 5789999999999 99999999999999999999999885 5999999999999999999999 9999999999999999
Q ss_pred ecCCC
Q 025313 243 AKTTP 247 (255)
Q Consensus 243 a~~~~ 247 (255)
|.+++
T Consensus 288 a~~k~ 292 (292)
T 2ghp_A 288 ADKKP 292 (292)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 98764
No 13
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=1.2e-29 Score=213.50 Aligned_cols=206 Identities=16% Similarity=0.183 Sum_probs=151.7
Q ss_pred CCcceeeeecChHhHHHhh-ccccCCcCC-CCCCCCCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHh
Q 025313 9 DTHFGFCCNVDEETSRELA-HYSCLDIQM-SNPWNSQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKV 86 (255)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~ 86 (255)
.++++|..-.+++.....- .+....... .-.....+...++| |+|||. ++|+++|.++|.+
T Consensus 56 ~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~l~-v~nlp~-----------~~t~~~l~~~f~~----- 118 (284)
T 3smz_A 56 YKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTDALLC-VANLPP-----------SLTQQQFEELVRP----- 118 (284)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCSCEEE-EESCCT-----------TCCHHHHHHHHGG-----
T ss_pred CCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCCCCEEE-EcCCCC-----------cCCHHHHHHHHHh-----
Confidence 3556666666666554433 222111110 00011233455677 999999 9999999999995
Q ss_pred hCCccccceEEe-ecCCccceEEeeeCCHHHHHHHh-CCCCCceecCCCCCCCCCcCCCCCCCCCCcCCCCCCCCCCCCC
Q 025313 87 LGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELT-GVPGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQI 164 (255)
Q Consensus 87 ~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (255)
||.|.+++++.+ .+|.++|||||+|.+.++|.+|+ .++|.... +..+........ .......
T Consensus 119 ~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~--------------g~~i~v~~a~~~--~~~~~~~ 182 (284)
T 3smz_A 119 FGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLG--------------PRTLYVHWTDAG--QLTPALL 182 (284)
T ss_dssp GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET--------------TEECEEEECCGG--GCCTTTT
T ss_pred cCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeC--------------CcEEEEEECCCC--CCCcccC
Confidence 499999998874 58999999999999999998777 67774310 000100000000 0012234
Q ss_pred ccceEEEcCCCCCC-CHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 025313 165 KTKKLFVTGLSFYT-SEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 243 (255)
Q Consensus 165 ~~~~l~V~nLp~~~-t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a 243 (255)
...+|||+|||+.+ ++++|+++|++||.|..++|+.+. +|.++|+|||+|.+.++|.+|+..|||..++|++|+|.++
T Consensus 183 ~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 261 (284)
T 3smz_A 183 HSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFC 261 (284)
T ss_dssp SCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEe
Confidence 57899999999995 999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 025313 244 KTTPK 248 (255)
Q Consensus 244 ~~~~~ 248 (255)
.+...
T Consensus 262 ~~~~~ 266 (284)
T 3smz_A 262 APGPP 266 (284)
T ss_dssp CSSSC
T ss_pred cCCCc
Confidence 87653
No 14
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=2.3e-29 Score=212.53 Aligned_cols=163 Identities=14% Similarity=0.194 Sum_probs=128.9
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
....+++|| |+|||. ++|+++|.++|.++ |.|.+|+++.+..+ ++|||||+|.++++|++|+
T Consensus 37 ~~~~~~~l~-V~nLp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~-~~g~afV~f~~~~~A~~A~ 98 (292)
T 2ghp_A 37 RNRELTTVL-VKNLPK-----------SYNQNKVYKYFKHC-----GPIIHVDVADSLKK-NFRFARIEFARYDGALAAI 98 (292)
T ss_dssp -----CEEE-EEEECT-----------TCCHHHHHHHHGGG-----SCEEEEEEEECTTS-SSEEEEEEESSHHHHHHHH
T ss_pred cCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEEECCCC-CcEEEEEEECCHHHHHHHH
Confidence 556778888 999999 99999999999955 99999999876555 5899999999999999999
Q ss_pred CCCCCceecCCCCCCCCCcCCCCCCCCCCcCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHhcCC-CEEEEEEEe
Q 025313 122 GVPGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFG-ELVEVKIIM 200 (255)
Q Consensus 122 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG-~i~~v~i~~ 200 (255)
+++|... .+..+... ....++|||+|||+.+++++|+++|++|| .|..+.++.
T Consensus 99 ~~~~~~~--------------~g~~i~v~------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~ 152 (292)
T 2ghp_A 99 TKTHKVV--------------GQNEIIVS------------HLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPS 152 (292)
T ss_dssp TTTTCEE--------------TTEECEEE------------ECCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-
T ss_pred HhCCcEe--------------CCcEEEEE------------ECCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEe
Confidence 8887532 11111000 11378999999999999999999999999 999999999
Q ss_pred cCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCCCCC
Q 025313 201 DKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPKY 249 (255)
Q Consensus 201 d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~~~~~ 249 (255)
+. .|.++|||||+|.+.++|.+|+..|||..+.|++|.|.++.+....
T Consensus 153 ~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 200 (292)
T 2ghp_A 153 LR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKS 200 (292)
T ss_dssp -------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC---
T ss_pred CC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCccc
Confidence 88 4889999999999999999999999999999999999999876543
No 15
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.96 E-value=1.1e-28 Score=207.29 Aligned_cols=178 Identities=19% Similarity=0.235 Sum_probs=129.1
Q ss_pred CCCcccccCCCCCCccEEEecCCCCCCCCHHHHH----HHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHH
Q 025313 43 QIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMV----DRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQ 118 (255)
Q Consensus 43 ~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~----~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~ 118 (255)
...+++|| |+|||. ++|+++|+ ++|. .||.|.+|+++. +++++|||||+|.+.++|+
T Consensus 6 ~~~~~~l~-V~nlp~-----------~~~~~~l~~~L~~~F~-----~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~ 66 (282)
T 3pgw_A 6 TRPNHTIY-INNLNE-----------KIKKDELKKSLYAIFS-----QFGQILDILVSR--SLKMRGQAFVIFKEVSSAT 66 (282)
T ss_pred CCCCCEEE-EeCCCC-----------CCCHHHHHHHHHHHHh-----ccCCeEEEEEcC--CCCcceEEEEEECCHHHHH
Confidence 34567788 999999 99999977 6777 449999998873 8899999999999999998
Q ss_pred HHh-CCCCCcee-cCCCCCCCCCcCC-----CCCCC-----------------------------------CCC------
Q 025313 119 ELT-GVPGVLSV-QPDENFGSENKDY-----GGNNL-----------------------------------QNS------ 150 (255)
Q Consensus 119 ~a~-~~~g~~~~-~~~~~~~~~~~~~-----~~~~~-----------------------------------~~~------ 150 (255)
+|+ .++|.... +............ .+... ...
T Consensus 67 ~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (282)
T 3pgw_A 67 NALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPP 146 (282)
T ss_pred HHHHHhcCCeeCCcEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCc
Confidence 777 66764211 1100000000000 00000 000
Q ss_pred ----------------------cC-CCCC----------------------CCCCCCCCccceEEEcCCCCCCCHHHHHH
Q 025313 151 ----------------------MV-PSDS----------------------SEASPTQIKTKKLFVTGLSFYTSEKTLRA 185 (255)
Q Consensus 151 ----------------------~~-~~~~----------------------~~~~~~~~~~~~l~V~nLp~~~t~~~L~~ 185 (255)
.. ++.. ........+.++|||+|||..+++++|++
T Consensus 147 ~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~ 226 (282)
T 3pgw_A 147 MTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSM 226 (282)
T ss_pred ccccccccccCCCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHH
Confidence 00 0000 00012233568899999999999999999
Q ss_pred HHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC-CEEEEEEEec
Q 025313 186 AFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIIN-GWMIVVDVAK 244 (255)
Q Consensus 186 ~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~-g~~l~V~~a~ 244 (255)
+|++||.|.++++..++ +|||||+|.+.++|.+|+..|||..+. |+.|+|.|++
T Consensus 227 ~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 227 LFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred HHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 99999999999999664 689999999999999999999999999 9999999986
No 16
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.96 E-value=1.8e-29 Score=202.55 Aligned_cols=176 Identities=10% Similarity=0.097 Sum_probs=125.3
Q ss_pred CcccccCCCCCC-ccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhC-
Q 025313 45 GTTLLFPLGTTK-HWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG- 122 (255)
Q Consensus 45 ~s~~~~~~~nl~-~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~- 122 (255)
.+.+|| |+||| . ++|+++|.++|.++ |.|.+|+++.+ ++|||||+|.++++|++|++
T Consensus 3 ~~~~l~-V~nL~~~-----------~~~~~~L~~~F~~~-----G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~ 61 (205)
T 3tyt_A 3 DSPVLM-VYGLDQS-----------KMNCDRVFNVFCLY-----GNVEKVKFMKS----KPGAAMVEMADGYAVDRAITH 61 (205)
T ss_dssp CCSEEE-EECCCTT-----------TCCHHHHHHHHTTT-----SCEEEEEECTT----STTCEEEEESSHHHHHHHHHH
T ss_pred CCCEEE-EeCCCcc-----------cCCHHHHHHHHHhc-----CCeEEEEEecC----CCCEEEEEECCHHHHHHHHHH
Confidence 345677 99999 8 89999999999954 99999998742 48999999999999977775
Q ss_pred CCCCcee-cCCCCCCCCCcCCCCC---CCCCC--------cCCCCCC------CCCCCCCccceEEEcCCCCCCCHHHHH
Q 025313 123 VPGVLSV-QPDENFGSENKDYGGN---NLQNS--------MVPSDSS------EASPTQIKTKKLFVTGLSFYTSEKTLR 184 (255)
Q Consensus 123 ~~g~~~~-~~~~~~~~~~~~~~~~---~~~~~--------~~~~~~~------~~~~~~~~~~~l~V~nLp~~~t~~~L~ 184 (255)
|||.... ++........+..... ..... ..+.... .......+.++|||+|||+.+++++|+
T Consensus 62 lng~~~~g~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~ 141 (205)
T 3tyt_A 62 LNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFF 141 (205)
T ss_dssp HTTCEETTEECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHH
T ss_pred hCCCEECCceEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHH
Confidence 7875321 1111111100000000 00000 0000000 001112457899999999999999999
Q ss_pred HHHhcCCCE--EEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCE----EEEEEEe
Q 025313 185 AAFEGFGEL--VEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGW----MIVVDVA 243 (255)
Q Consensus 185 ~~F~~fG~i--~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~----~l~V~~a 243 (255)
++|++||.| ..++++.+. |.++|+|||+|.+.++|.+|+..|||..|.|+ ++.|.+|
T Consensus 142 ~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 142 EICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp HHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred HHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 999999999 899998875 56679999999999999999999999999986 5777665
No 17
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=4.4e-28 Score=197.84 Aligned_cols=179 Identities=17% Similarity=0.212 Sum_probs=130.0
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
+...+++|| |+|||.+ ++|+++|.++|.++ |.|.+|+++.+. +|||||+|.++++|++|+
T Consensus 30 ~~~~~~~l~-V~nLp~~----------~~te~~L~~~F~~~-----G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai 89 (229)
T 2adc_A 30 AGAGNSVLL-VSNLNPE----------RVTPQSLFILFGVY-----GDVQRVKILFNK----KENALVQMADGNQAQLAM 89 (229)
T ss_dssp GCCCCSEEE-EESCCTT----------TCCHHHHHHHHHHH-----TCEEEEEECCTT----SCCEEEEESCHHHHHHHH
T ss_pred CCCCCCEEE-EeCCCcc----------cCCHHHHHHHHHhC-----CCeEEEEEEECC----CCEEEEEECCHHHHHHHH
Confidence 345667788 9999861 59999999999966 999999987542 899999999999998888
Q ss_pred C-CCCCce-ecCCCCCCCCCc------C----------CCCCCCCCCcCCCCCCCCCCCCCccceEEEcCCCCCCCHHHH
Q 025313 122 G-VPGVLS-VQPDENFGSENK------D----------YGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTL 183 (255)
Q Consensus 122 ~-~~g~~~-~~~~~~~~~~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L 183 (255)
+ ++|... .+.......... . +..... ................+.++|||+|||..+++++|
T Consensus 90 ~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l 168 (229)
T 2adc_A 90 SHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPL-HRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDL 168 (229)
T ss_dssp HHHTTCBCSSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSS-CCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHH
T ss_pred HHhCCCeECCeEEEEEEecCccccCccccccccccccccccCcc-cccCCccccccccCCCCCCEEEEeCCCccCCHHHH
Confidence 5 776421 111111101000 0 000000 00000000001112345789999999999999999
Q ss_pred HHHHhcCC-CEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC-CEEEEEEEecCC
Q 025313 184 RAAFEGFG-ELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIIN-GWMIVVDVAKTT 246 (255)
Q Consensus 184 ~~~F~~fG-~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~-g~~l~V~~a~~~ 246 (255)
+++|++|| .|..++++.+ ++|+|||+|.+.++|.+|++.|||..++ |++|+|.|++++
T Consensus 169 ~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 169 KVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp HHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred HHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 99999999 9999999754 3789999999999999999999999999 999999999864
No 18
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.95 E-value=2.9e-28 Score=204.94 Aligned_cols=155 Identities=18% Similarity=0.208 Sum_probs=131.3
Q ss_pred CcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhC-C
Q 025313 45 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG-V 123 (255)
Q Consensus 45 ~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~-~ 123 (255)
.+++|| |+|||. ++|+++|.++|.++ | |.++++ ++++|||||+|.++++|++|+. +
T Consensus 21 ~~~~l~-V~nLp~-----------~~te~~l~~~F~~~-----G-i~~~~~-----~~~~g~afV~f~~~~~A~~A~~~l 77 (284)
T 3smz_A 21 NRRKIL-IRGLPG-----------DVTNQEVHDLLSDY-----E-LKYCFV-----DKYKGTAFVTLLNGEQAEAAINAF 77 (284)
T ss_dssp CCCEEE-EECCCT-----------TCCHHHHHHHTTTS-----C-EEEEEE-----ETTTTEEEEEESSHHHHHHHHHHH
T ss_pred CCCEEE-EeCCCC-----------CCCHHHHHHHHHHc-----C-CEEEEE-----ecCCCEEEEEeCCHHHHHHHHHHc
Confidence 456788 999999 99999999999954 9 877776 6779999999999999987774 5
Q ss_pred CCCceecCCCCCCCCCcCCCCCCCCCCcCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCC
Q 025313 124 PGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKI 203 (255)
Q Consensus 124 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~ 203 (255)
+|... .+..+.... .....+|||+|||+.+++++|+++|++||.|..+.++.+..
T Consensus 78 ~~~~~--------------~g~~i~v~~-----------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~ 132 (284)
T 3smz_A 78 HQSRL--------------RERELSVQL-----------QPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSER 132 (284)
T ss_dssp TTCEE--------------TTEECEEEE-----------CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT
T ss_pred CCCee--------------CCeEEEEEe-----------cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCC
Confidence 76531 111111110 12357899999999999999999999999999999999998
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCCC
Q 025313 204 SKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTP 247 (255)
Q Consensus 204 ~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~~~ 247 (255)
+|.++|||||+|.+.++|.+|+..|+|..++|++|.|.++.+..
T Consensus 133 ~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~ 176 (284)
T 3smz_A 133 TGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQ 176 (284)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGG
T ss_pred CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 99999999999999999999999999999999999999998654
No 19
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.95 E-value=3.4e-28 Score=202.30 Aligned_cols=157 Identities=20% Similarity=0.316 Sum_probs=129.5
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
....++++| |+|||. ++|+++|.++|.+ ||.|.+|++. +++|||||+|.+.++|++|+
T Consensus 18 ~~~~~~~l~-V~nLp~-----------~~te~~l~~~F~~-----~G~i~~v~i~-----~~kg~afV~f~~~~~A~~A~ 75 (261)
T 3sde_A 18 TYTQRCRLF-VGNLPT-----------DITEEDFKRLFER-----YGEPSEVFIN-----RDRGFGFIRLESRTLAEIAK 75 (261)
T ss_dssp SSCGGGEEE-EESCCT-----------TCCHHHHHHHTGG-----GCCCSEEEEE-----TTTTEEEEECSSHHHHHHHH
T ss_pred CCCCCCEEE-EECCCC-----------CCCHHHHHHHHHh-----cCCEEEEEEe-----CCCcEEEEEECCHHHHHHHH
Confidence 445566788 999999 9999999999994 4999999885 45899999999999998877
Q ss_pred C-CCCCceecCCCCCCCCCcCCCCCCCCCCcCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEe
Q 025313 122 G-VPGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIM 200 (255)
Q Consensus 122 ~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~ 200 (255)
. ++|... .+..+.... ..+..+|||+|||+.+++++|+++|++||.|..+.++.
T Consensus 76 ~~l~g~~i--------------~g~~l~v~~-----------a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~ 130 (261)
T 3sde_A 76 AELDGTIL--------------KSRPLRIRF-----------ATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVV 130 (261)
T ss_dssp HHHTTCEE--------------TTEECEEEE-----------CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred HHcCCcEE--------------CCceeEeee-----------cccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeee
Confidence 5 677532 111111110 11367899999999999999999999999999999999
Q ss_pred cCCCCCcceEEEEEeCCHHHHHHHHHHhC-CceeC---CEEEEEEEecCC
Q 025313 201 DKISKRSKGYAFIEYTTEEAASAALKEMN-GKIIN---GWMIVVDVAKTT 246 (255)
Q Consensus 201 d~~~g~~rg~aFV~F~~~~~A~~Al~~l~-g~~l~---g~~l~V~~a~~~ 246 (255)
|. +|.++|||||+|.+.++|.+|+..|| |..+. |++|.|.++.+.
T Consensus 131 ~~-~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 131 DD-RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp ET-TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred CC-CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 95 99999999999999999999999994 55555 999999999865
No 20
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.95 E-value=5e-28 Score=192.96 Aligned_cols=175 Identities=18% Similarity=0.212 Sum_probs=127.0
Q ss_pred cccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhC-CC
Q 025313 46 TTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG-VP 124 (255)
Q Consensus 46 s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~-~~ 124 (255)
++++| |+|||.+ ++|+++|.++|.++ |.|.+|+++.+. +|||||+|.++++|++|+. ++
T Consensus 3 ~~~l~-v~nlp~~----------~~~~~~l~~~F~~~-----G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~ 62 (198)
T 1qm9_A 3 NSVLL-VSNLNPE----------RVTPQSLFILFGVY-----GDVQRVKILFNK----KENALVQMADGNQAQLAMSHLN 62 (198)
T ss_dssp CCEEE-EECCCSS----------SCCHHHHHHHHHTT-----CCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHT
T ss_pred CcEEE-EeCCCcc----------cCCHHHHHHHHHhc-----CCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhC
Confidence 45677 8888751 59999999999954 999999987532 8999999999999988876 67
Q ss_pred CCce-ecCCCCCCCCC----------------cCCCCCCCCCCcCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHH
Q 025313 125 GVLS-VQPDENFGSEN----------------KDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAF 187 (255)
Q Consensus 125 g~~~-~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F 187 (255)
|... .++........ +.+..... ....++..........+.++|||+|||..+++++|+++|
T Consensus 63 ~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f 141 (198)
T 1qm9_A 63 GHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPL-HRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLF 141 (198)
T ss_dssp TCCCSSCCCEEEECCCCSCCCSSSSSSSSSCEEESSCCCT-TSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHH
T ss_pred CCeecCeEEEEEEecCCCcCCCCcCCccccccccccCCch-hhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHH
Confidence 6421 11111100000 00000000 000111111112223458899999999999999999999
Q ss_pred hcCC-CEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC-CEEEEEEEecCC
Q 025313 188 EGFG-ELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIIN-GWMIVVDVAKTT 246 (255)
Q Consensus 188 ~~fG-~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~-g~~l~V~~a~~~ 246 (255)
++|| .|..+++..+ ++|+|||+|.+.++|.+|+..|||..++ |++|+|.|++++
T Consensus 142 ~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 142 SSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp HHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred HHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 9999 9999999764 3789999999999999999999999999 999999999864
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.94 E-value=4e-26 Score=175.77 Aligned_cols=140 Identities=21% Similarity=0.276 Sum_probs=106.0
Q ss_pred cCCccceEEeeeCCHHHHHHHhCC-C------CCceecCCCCCCCCCcCCCCCCCCCCcCCCCCCCCCCCCCccceEEEc
Q 025313 100 VSWQSNFGFCCELDDECAQELTGV-P------GVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVT 172 (255)
Q Consensus 100 ~~~~~g~aFV~f~~~e~a~~a~~~-~------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~ 172 (255)
..+++|||||+|.++++|++|+.. + |.......... ....................+|||+
T Consensus 9 ~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~l~v~ 76 (158)
T 2kn4_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKT------------FTVTEGSHHHHHHMDVEGMTSLKVD 76 (158)
T ss_dssp CSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTE------------EEEECCCCCSSCCCCCCBCCEEEEE
T ss_pred CccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCcccc------------ccccccccccccccCCCCCCEEEEe
Confidence 336899999999999999777632 2 21111000000 0000000111112333557899999
Q ss_pred CCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCCCCCCC
Q 025313 173 GLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPKYSR 251 (255)
Q Consensus 173 nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~~~~~~~ 251 (255)
|||+.+++++|+++|++||.|..++|+.|+.+|.++|||||+|.+.++|++|++.|||..++|++|+|.++++......
T Consensus 77 nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~ 155 (158)
T 2kn4_A 77 NLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDS 155 (158)
T ss_dssp SCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCCCC
T ss_pred CCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCCCC
Confidence 9999999999999999999999999999988999999999999999999999999999999999999999997654433
No 22
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.92 E-value=1.9e-24 Score=153.33 Aligned_cols=82 Identities=30% Similarity=0.499 Sum_probs=78.9
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 025313 165 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 244 (255)
Q Consensus 165 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~ 244 (255)
.+++|||+|||+.+|+++|+++|++||.|.+++|++|+.+|.++|||||+|.+.++|++|++.|||..++|++|+|.||+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CC
Q 025313 245 TT 246 (255)
Q Consensus 245 ~~ 246 (255)
|.
T Consensus 98 PS 99 (99)
T 4fxv_A 98 PS 99 (99)
T ss_dssp BC
T ss_pred CC
Confidence 63
No 23
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.89 E-value=7.5e-24 Score=147.92 Aligned_cols=85 Identities=21% Similarity=0.389 Sum_probs=78.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCC-CEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh-CCceeCCEEEEEEEe
Q 025313 166 TKKLFVTGLSFYTSEKTLRAAFEGFG-ELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEM-NGKIINGWMIVVDVA 243 (255)
Q Consensus 166 ~~~l~V~nLp~~~t~~~L~~~F~~fG-~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l-~g~~l~g~~l~V~~a 243 (255)
+++|||+|||+.+|+++|+++|++|| .|.+|+|++|+.+|.++|||||+|.+.++|++|++.+ ++..++|++|+|.+|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 8999999999999999999999999999999999887 456899999999999
Q ss_pred cCCCCCC
Q 025313 244 KTTPKYS 250 (255)
Q Consensus 244 ~~~~~~~ 250 (255)
.++++..
T Consensus 81 ~~~~~~~ 87 (91)
T 2lxi_A 81 DPKPKIN 87 (91)
T ss_dssp CSCCCCS
T ss_pred CCCCCCC
Confidence 9876554
No 24
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.89 E-value=8.7e-23 Score=147.43 Aligned_cols=83 Identities=20% Similarity=0.307 Sum_probs=79.6
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 025313 164 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 243 (255)
Q Consensus 164 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a 243 (255)
.+.++|||+|||+.+++++|+++|++||.|.+++|++|+.+|+++|||||+|++.++|++|++.|||..+.|++|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 025313 244 KTT 246 (255)
Q Consensus 244 ~~~ 246 (255)
...
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 754
No 25
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.88 E-value=3.2e-22 Score=137.07 Aligned_cols=82 Identities=29% Similarity=0.521 Sum_probs=78.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecC
Q 025313 166 TKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKT 245 (255)
Q Consensus 166 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~ 245 (255)
+.+|||+|||+.+++++|+++|++||.|.++.+++++.+|.++|||||+|.+.++|++|+..|||..++|++|+|.++++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999988999999999999999999999999999999999999999987
Q ss_pred CC
Q 025313 246 TP 247 (255)
Q Consensus 246 ~~ 247 (255)
++
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 26
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=3.7e-22 Score=142.51 Aligned_cols=90 Identities=28% Similarity=0.385 Sum_probs=83.7
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 025313 162 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 241 (255)
Q Consensus 162 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~ 241 (255)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++|+..|||..|+|++|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34568999999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred EecCCCCCCC
Q 025313 242 VAKTTPKYSR 251 (255)
Q Consensus 242 ~a~~~~~~~~ 251 (255)
+++++.....
T Consensus 91 ~a~~~~~~~~ 100 (103)
T 2cq0_A 91 WAKPSTNSGP 100 (103)
T ss_dssp ESSCCCCSCC
T ss_pred ECCCCCCCCC
Confidence 9998765443
No 27
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.88 E-value=2.4e-22 Score=138.92 Aligned_cols=84 Identities=27% Similarity=0.476 Sum_probs=77.5
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 025313 164 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 243 (255)
Q Consensus 164 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a 243 (255)
.+.++|||+|||..+++++|+++|++||.|.++.++.++.+|.++|||||+|.+.++|++|++.|||..++|++|+|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 34789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCC
Q 025313 244 KTTP 247 (255)
Q Consensus 244 ~~~~ 247 (255)
++++
T Consensus 84 ~~kp 87 (87)
T 3bs9_A 84 TRKP 87 (87)
T ss_dssp C---
T ss_pred CCCC
Confidence 8753
No 28
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=3.2e-22 Score=141.78 Aligned_cols=90 Identities=30% Similarity=0.531 Sum_probs=83.8
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 025313 164 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 243 (255)
Q Consensus 164 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a 243 (255)
.+.++|||+|||+.+++++|+++|++||.|..+.|+.++.+|.++|||||+|.+.++|++|++.|||..+.|++|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45789999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCC
Q 025313 244 KTTPKYSRGR 253 (255)
Q Consensus 244 ~~~~~~~~~r 253 (255)
++++...+..
T Consensus 86 ~~~~~~~~~~ 95 (99)
T 1whw_A 86 TIKKEASQSG 95 (99)
T ss_dssp CCCSTTCCCC
T ss_pred CCCcccccCC
Confidence 9876554433
No 29
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=2.5e-22 Score=143.09 Aligned_cols=90 Identities=32% Similarity=0.541 Sum_probs=83.7
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 242 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~ 242 (255)
..+.++|||+|||+.+++++|+++|++||.|..+.|+.++.+|.++|||||+|.+.++|++|++.|||..|.|++|+|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCC
Q 025313 243 AKTTPKYSRG 252 (255)
Q Consensus 243 a~~~~~~~~~ 252 (255)
+++.....++
T Consensus 89 a~~~~~~~~~ 98 (102)
T 2cqb_A 89 AKPMRIKESG 98 (102)
T ss_dssp CCCCCCCCCC
T ss_pred CCCCCCCCCC
Confidence 9987655443
No 30
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=4.1e-22 Score=140.10 Aligned_cols=89 Identities=31% Similarity=0.509 Sum_probs=82.9
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 025313 164 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 243 (255)
Q Consensus 164 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a 243 (255)
.+.++|||+|||..+++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|++|++.|||..+.|++|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 35789999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred cCCCCCCCC
Q 025313 244 KTTPKYSRG 252 (255)
Q Consensus 244 ~~~~~~~~~ 252 (255)
.++.....+
T Consensus 83 ~~~~~~~~~ 91 (95)
T 2dnz_A 83 TERLDGGSG 91 (95)
T ss_dssp SCCCCCCCC
T ss_pred ccccCCCCC
Confidence 987654443
No 31
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.88 E-value=5.1e-23 Score=154.18 Aligned_cols=91 Identities=30% Similarity=0.507 Sum_probs=83.9
Q ss_pred CCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEE
Q 025313 161 PTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVV 240 (255)
Q Consensus 161 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V 240 (255)
....+.++|||+|||+.+++++|+++|++||.|..+.|+.++.+|.++|||||+|.+.++|++|++.|||..|.|++|+|
T Consensus 42 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 121 (135)
T 2lea_A 42 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 121 (135)
T ss_dssp SSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred EEecCCCCCCC
Q 025313 241 DVAKTTPKYSR 251 (255)
Q Consensus 241 ~~a~~~~~~~~ 251 (255)
.++++......
T Consensus 122 ~~a~~~~~~~~ 132 (135)
T 2lea_A 122 QMARYGRPPDS 132 (135)
T ss_dssp EECCCCCCCTT
T ss_pred EECCCCCCCcc
Confidence 99997765443
No 32
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=4.8e-22 Score=140.86 Aligned_cols=89 Identities=31% Similarity=0.497 Sum_probs=82.3
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 242 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~ 242 (255)
..+.++|||+|||+.+++++|+++|++||.|..+.|+.++.+|.++|||||+|.+.++|++|++ |||..++|++|+|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 3457899999999999999999999999999999999999899999999999999999999997 999999999999999
Q ss_pred ecCCCCCCCC
Q 025313 243 AKTTPKYSRG 252 (255)
Q Consensus 243 a~~~~~~~~~ 252 (255)
+.++......
T Consensus 86 a~~~~~~~~~ 95 (99)
T 2dgs_A 86 AEPRDSKSSG 95 (99)
T ss_dssp CCCCCCCCCC
T ss_pred CCCCcccCCC
Confidence 9987654443
No 33
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.88 E-value=1.3e-21 Score=142.49 Aligned_cols=89 Identities=26% Similarity=0.465 Sum_probs=82.8
Q ss_pred CCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEE
Q 025313 161 PTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVV 240 (255)
Q Consensus 161 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V 240 (255)
....+.++|||+|||+.+++++|+++|++||.|..|+|+.++.+|.++|||||+|.+.++|++|++.|||..|+|++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 33456889999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEecCCCCC
Q 025313 241 DVAKTTPKY 249 (255)
Q Consensus 241 ~~a~~~~~~ 249 (255)
.++++.+..
T Consensus 90 ~~a~~~~~~ 98 (115)
T 2dgo_A 90 NWATRKPPA 98 (115)
T ss_dssp EESSCCCCC
T ss_pred EEccCCCCC
Confidence 999876543
No 34
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.88 E-value=7.9e-23 Score=143.54 Aligned_cols=81 Identities=22% Similarity=0.409 Sum_probs=76.2
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCC--EEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc----eeCCEEE
Q 025313 165 KTKKLFVTGLSFYTSEKTLRAAFEGFGE--LVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGK----IINGWMI 238 (255)
Q Consensus 165 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~--i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~----~l~g~~l 238 (255)
.-.+|||+|||+.+|+++|+++|++||. |.+|++++|+.+|++||||||+|.+.++|++|++.|||. .++||+|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 4678999999999999999999999995 679999999999999999999999999999999999996 5999999
Q ss_pred EEEEecC
Q 025313 239 VVDVAKT 245 (255)
Q Consensus 239 ~V~~a~~ 245 (255)
.|+||++
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999986
No 35
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=2.9e-22 Score=141.17 Aligned_cols=88 Identities=31% Similarity=0.455 Sum_probs=82.2
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCCEEEE-EEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 025313 164 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEV-KIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 242 (255)
Q Consensus 164 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v-~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~ 242 (255)
.+.++|||+|||+.+++++|+++|++||.|..+ +|++++.+|.++|||||+|.+.++|++|+..|||..++|++|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 347899999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 025313 243 AKTTPKYSR 251 (255)
Q Consensus 243 a~~~~~~~~ 251 (255)
+.++.....
T Consensus 83 a~~~~~~~~ 91 (96)
T 1x5t_A 83 AFKKDSKGS 91 (96)
T ss_dssp SCCCCCCCC
T ss_pred ecccCCCCC
Confidence 988765443
No 36
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.88 E-value=1.2e-21 Score=139.90 Aligned_cols=90 Identities=21% Similarity=0.419 Sum_probs=82.2
Q ss_pred CCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEE
Q 025313 161 PTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVV 240 (255)
Q Consensus 161 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V 240 (255)
....+.++|||+|||+.+++++|+++|++|| |..|.|++++.+|+++|||||+|.+.++|++|+ .|||..|.|++|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEE
Confidence 3345588999999999999999999999997 999999999989999999999999999999999 99999999999999
Q ss_pred EEecCCCCCCCC
Q 025313 241 DVAKTTPKYSRG 252 (255)
Q Consensus 241 ~~a~~~~~~~~~ 252 (255)
.++.+.....++
T Consensus 88 ~~a~~~~~~~~~ 99 (103)
T 2dng_A 88 DIAEGRKQDKSG 99 (103)
T ss_dssp EECCCCCCCCSS
T ss_pred EEecCCCCCCCC
Confidence 999987654443
No 37
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=5e-22 Score=142.26 Aligned_cols=88 Identities=28% Similarity=0.391 Sum_probs=82.6
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 025313 162 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 241 (255)
Q Consensus 162 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~ 241 (255)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++|++.|||..|.|++|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34558899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred EecCCCCC
Q 025313 242 VAKTTPKY 249 (255)
Q Consensus 242 ~a~~~~~~ 249 (255)
++.++.+.
T Consensus 91 ~a~~~~~~ 98 (105)
T 1x5u_A 91 KASAHNKN 98 (105)
T ss_dssp ETTTTSCC
T ss_pred ECCCCCcC
Confidence 99887644
No 38
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.88 E-value=1.2e-21 Score=142.64 Aligned_cols=89 Identities=26% Similarity=0.382 Sum_probs=82.9
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 025313 162 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 241 (255)
Q Consensus 162 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~ 241 (255)
...+.++|||+|||+.+++++|+++|++||.|..++|+.++.+|.++|||||+|.+.++|++|++.|||..|.|++|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 33457899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred EecCCCCCC
Q 025313 242 VAKTTPKYS 250 (255)
Q Consensus 242 ~a~~~~~~~ 250 (255)
+++++....
T Consensus 101 ~a~~~~~~~ 109 (115)
T 2cpz_A 101 LKRSKNDSK 109 (115)
T ss_dssp CCCCSCCCC
T ss_pred EcCCCCcCC
Confidence 999776543
No 39
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.1e-21 Score=137.93 Aligned_cols=86 Identities=33% Similarity=0.524 Sum_probs=80.9
Q ss_pred CCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEE
Q 025313 160 SPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIV 239 (255)
Q Consensus 160 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~ 239 (255)
.....+.++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++.|||..++|++|+
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 9 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp CCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 33445689999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred EEEecC
Q 025313 240 VDVAKT 245 (255)
Q Consensus 240 V~~a~~ 245 (255)
|.++++
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999875
No 40
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=3.5e-22 Score=142.34 Aligned_cols=90 Identities=36% Similarity=0.629 Sum_probs=83.7
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 242 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~ 242 (255)
..+.++|||+|||+.+++++|+++|++||.|..+.|+.++.+|.++|||||+|.+.++|++|++.|||..|.|++|+|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 44578999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCC
Q 025313 243 AKTTPKYSRG 252 (255)
Q Consensus 243 a~~~~~~~~~ 252 (255)
++++....++
T Consensus 89 a~~~~~~~~~ 98 (102)
T 1x5s_A 89 AGKSSDNRSG 98 (102)
T ss_dssp EECCCCCCCC
T ss_pred CCCCCCCCCC
Confidence 9987655443
No 41
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=3.4e-22 Score=142.69 Aligned_cols=88 Identities=27% Similarity=0.413 Sum_probs=82.3
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 025313 162 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 241 (255)
Q Consensus 162 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~ 241 (255)
...+.++|||+|||+.+++++|+++|++||.|..+.|..++.+|.++|||||+|.+.++|++|++.|||..+.|++|+|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34557899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred EecCCCCC
Q 025313 242 VAKTTPKY 249 (255)
Q Consensus 242 ~a~~~~~~ 249 (255)
++++....
T Consensus 89 ~a~~~~~~ 96 (103)
T 2dnm_A 89 VARYGRRD 96 (103)
T ss_dssp ECSSCCSC
T ss_pred ECCcCCCC
Confidence 99976543
No 42
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=1e-21 Score=142.06 Aligned_cols=90 Identities=30% Similarity=0.499 Sum_probs=83.6
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC------CceeCC
Q 025313 162 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMN------GKIING 235 (255)
Q Consensus 162 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~------g~~l~g 235 (255)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.|+.+|.++|||||+|.+.++|++|+..|| |..++|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 34558899999999999999999999999999999999999899999999999999999999999999 999999
Q ss_pred EEEEEEEecCCCCCCC
Q 025313 236 WMIVVDVAKTTPKYSR 251 (255)
Q Consensus 236 ~~l~V~~a~~~~~~~~ 251 (255)
++|+|.++.++....+
T Consensus 91 ~~l~v~~a~~~~~~~~ 106 (111)
T 1x4h_A 91 RQLKVDLAVTRDEAAS 106 (111)
T ss_dssp CEEEEECCCCCCCCCC
T ss_pred EEEEEEECCCCccCCC
Confidence 9999999998765444
No 43
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=8.7e-22 Score=140.81 Aligned_cols=88 Identities=22% Similarity=0.414 Sum_probs=81.7
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCC-CCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKIS-KRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 241 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~-g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~ 241 (255)
..+.++|||+|||+.+++++|+++|++|| |..|.|+.++.+ |+++|||||+|.+.++|++|+ .|||..|.|++|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 34578999999999999999999999999 999999999987 999999999999999999999 999999999999999
Q ss_pred EecCCCCCCCC
Q 025313 242 VAKTTPKYSRG 252 (255)
Q Consensus 242 ~a~~~~~~~~~ 252 (255)
++.++....++
T Consensus 90 ~a~~~~~~~~~ 100 (104)
T 1wi8_A 90 VADQAQDKDSG 100 (104)
T ss_dssp ECCCCCCCCCC
T ss_pred EccCCCCCCCC
Confidence 99987655544
No 44
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=9.1e-22 Score=141.37 Aligned_cols=92 Identities=23% Similarity=0.494 Sum_probs=84.4
Q ss_pred CCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEec-CCCCCcceEEEEEeCCHHHHHHHHHHh-CCceeCCEEE
Q 025313 161 PTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMD-KISKRSKGYAFIEYTTEEAASAALKEM-NGKIINGWMI 238 (255)
Q Consensus 161 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d-~~~g~~rg~aFV~F~~~~~A~~Al~~l-~g~~l~g~~l 238 (255)
....+.++|||+|||+.+++++|+++|++||.|..|.|+.+ +.+|.++|||||+|.+.++|++|+..| ||..|.|++|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34456889999999999999999999999999999999999 789999999999999999999999999 9999999999
Q ss_pred EEEEecCCCCCCCC
Q 025313 239 VVDVAKTTPKYSRG 252 (255)
Q Consensus 239 ~V~~a~~~~~~~~~ 252 (255)
+|.+++++.....+
T Consensus 90 ~v~~a~~~~~~~~~ 103 (107)
T 2cph_A 90 VLEWADSEVTVQSG 103 (107)
T ss_dssp EEEECCCCCCCCCS
T ss_pred EEEeCCCCCCCCCC
Confidence 99999987655443
No 45
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=1.5e-21 Score=138.50 Aligned_cols=85 Identities=27% Similarity=0.594 Sum_probs=80.6
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 242 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~ 242 (255)
..+.++|||+|||+.+++++|+++|++||.|..+.|..++ +|.++|||||+|.+.++|++|++.|||..++|++|+|.+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3457899999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 025313 243 AKTTPK 248 (255)
Q Consensus 243 a~~~~~ 248 (255)
+++++.
T Consensus 93 a~~~~~ 98 (100)
T 2do4_A 93 SNSGPS 98 (100)
T ss_dssp CCCCSC
T ss_pred CCCCCC
Confidence 987654
No 46
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.87 E-value=6.4e-22 Score=144.15 Aligned_cols=81 Identities=31% Similarity=0.588 Sum_probs=75.5
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 025313 165 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 244 (255)
Q Consensus 165 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~ 244 (255)
...+|||+|||+.+++++|+++|++||.|.+|+|++|+ +.++|||||+|.+.++|++|++.|||..|+|++|+|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35689999999999999999999999999999999995 4589999999999999999999999999999999999998
Q ss_pred CCC
Q 025313 245 TTP 247 (255)
Q Consensus 245 ~~~ 247 (255)
++.
T Consensus 82 ~~~ 84 (115)
T 4f25_A 82 SRK 84 (115)
T ss_dssp CCC
T ss_pred Ccc
Confidence 754
No 47
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.87 E-value=8.4e-22 Score=138.83 Aligned_cols=83 Identities=20% Similarity=0.489 Sum_probs=79.7
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 025313 165 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 244 (255)
Q Consensus 165 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~ 244 (255)
++++|||+|||..+++++|+++|++||.|.++++..++.+|.++|||||+|.+.++|++|++.|||..++|+.|+|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 36899999999999999999999999999999999999899999999999999999999999999999999999999998
Q ss_pred CCC
Q 025313 245 TTP 247 (255)
Q Consensus 245 ~~~ 247 (255)
+++
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 765
No 48
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.87 E-value=6.8e-22 Score=136.03 Aligned_cols=81 Identities=35% Similarity=0.598 Sum_probs=77.9
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 025313 164 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 243 (255)
Q Consensus 164 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a 243 (255)
.+.++|||+|||+.+++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|++|++.|||..++|++|+|.+|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred c
Q 025313 244 K 244 (255)
Q Consensus 244 ~ 244 (255)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 49
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.87 E-value=7.7e-22 Score=152.84 Aligned_cols=85 Identities=32% Similarity=0.454 Sum_probs=80.3
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 242 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~ 242 (255)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++|+..|||..|.|++|.|.|
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45578999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 025313 243 AKTTP 247 (255)
Q Consensus 243 a~~~~ 247 (255)
+.+.+
T Consensus 149 a~~~~ 153 (165)
T 1rk8_A 149 CFVKG 153 (165)
T ss_dssp SEECC
T ss_pred ecCCC
Confidence 98764
No 50
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.87 E-value=1.8e-21 Score=139.37 Aligned_cols=87 Identities=28% Similarity=0.391 Sum_probs=81.2
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC---EEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIING---WMIV 239 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g---~~l~ 239 (255)
..+.++|||+|||+.+++++|+++|++||.|..+.|+.++ +|.++|||||+|.+.++|++|++.|||..+.| ++|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3458999999999999999999999999999999999998 89999999999999999999999999999998 9999
Q ss_pred EEEecCCCCCC
Q 025313 240 VDVAKTTPKYS 250 (255)
Q Consensus 240 V~~a~~~~~~~ 250 (255)
|.++.+++.+.
T Consensus 91 V~~a~~~~~~~ 101 (105)
T 2dnh_A 91 VKFADTDKESG 101 (105)
T ss_dssp EEESCSSCCCS
T ss_pred EEECccCcccC
Confidence 99999876543
No 51
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=1.7e-21 Score=139.04 Aligned_cols=88 Identities=31% Similarity=0.542 Sum_probs=81.5
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 025313 162 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 241 (255)
Q Consensus 162 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~ 241 (255)
...+.++|||+|||+.+++++|+++|++||.|..+.|+.+ +|.++|||||+|.+.++|++|++.|||..+.|++|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3456889999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred EecCCCCCCC
Q 025313 242 VAKTTPKYSR 251 (255)
Q Consensus 242 ~a~~~~~~~~ 251 (255)
++.++.....
T Consensus 89 ~a~~~~~~~~ 98 (103)
T 2d9p_A 89 LAQRKEERQS 98 (103)
T ss_dssp ECSSCCCCCC
T ss_pred EecccccCCC
Confidence 9998765433
No 52
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=1.1e-21 Score=138.77 Aligned_cols=86 Identities=30% Similarity=0.525 Sum_probs=80.1
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCC---CCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 025313 165 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKI---SKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 241 (255)
Q Consensus 165 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~---~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~ 241 (255)
+.++|||+|||+.+++++|+++|++||.|..+.|..++. +|.++|||||+|.+.++|++|++.|||..++|++|+|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 478999999999999999999999999999999999886 56899999999999999999999999999999999999
Q ss_pred EecCCCCCC
Q 025313 242 VAKTTPKYS 250 (255)
Q Consensus 242 ~a~~~~~~~ 250 (255)
++++..+..
T Consensus 84 ~a~~~~~~~ 92 (98)
T 2cpf_A 84 ISERATKPA 92 (98)
T ss_dssp CSSCSSCCC
T ss_pred EccCCCCCC
Confidence 998776443
No 53
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=1.4e-21 Score=137.04 Aligned_cols=83 Identities=28% Similarity=0.486 Sum_probs=78.9
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 025313 162 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 241 (255)
Q Consensus 162 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~ 241 (255)
...+.++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++.|||..+.|++|+|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34557899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred Eec
Q 025313 242 VAK 244 (255)
Q Consensus 242 ~a~ 244 (255)
+|+
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 985
No 54
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.1e-21 Score=140.69 Aligned_cols=85 Identities=29% Similarity=0.473 Sum_probs=80.8
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 242 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~ 242 (255)
..+.++|||+|||+.+++++|+++|++||.|..+.|..++.+|.++|||||+|.+.++|++|+..|||..++|++|+|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 34578999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 025313 243 AKTTP 247 (255)
Q Consensus 243 a~~~~ 247 (255)
+.+++
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 98754
No 55
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.87 E-value=1.1e-21 Score=143.15 Aligned_cols=83 Identities=40% Similarity=0.606 Sum_probs=79.2
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 025313 164 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 243 (255)
Q Consensus 164 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a 243 (255)
.+.++|||+|||+.+++++|+++|++||.|..|.|..+. +|.++|||||+|.+.++|++|++.|||..++|++|+|.++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 347899999999999999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred cCCC
Q 025313 244 KTTP 247 (255)
Q Consensus 244 ~~~~ 247 (255)
+++.
T Consensus 84 ~~~~ 87 (116)
T 2fy1_A 84 KKPS 87 (116)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 8764
No 56
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.87 E-value=1.5e-21 Score=138.37 Aligned_cols=84 Identities=23% Similarity=0.356 Sum_probs=79.3
Q ss_pred CCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEE--------EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 025313 161 PTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVE--------VKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKI 232 (255)
Q Consensus 161 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~--------v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~ 232 (255)
..+.+.++|||+|||+.+++++|+++|++||.|.. ++++.++.+|+++|||||+|.+.++|++|++.|||..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34456899999999999999999999999999999 9999999899999999999999999999999999999
Q ss_pred eCCEEEEEEEec
Q 025313 233 INGWMIVVDVAK 244 (255)
Q Consensus 233 l~g~~l~V~~a~ 244 (255)
++|++|+|.+|+
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999974
No 57
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.86 E-value=9.5e-22 Score=141.06 Aligned_cols=91 Identities=26% Similarity=0.412 Sum_probs=83.6
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee---CCEEE
Q 025313 162 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKII---NGWMI 238 (255)
Q Consensus 162 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l---~g~~l 238 (255)
...+.++|||+|||+.+++++|+++|++||.|..|+|+.++.+|.++|||||+|.+.++|++|++.|||..+ .|++|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 345578999999999999999999999999999999999998999999999999999999999999999998 89999
Q ss_pred EEEEecCCCCCCCC
Q 025313 239 VVDVAKTTPKYSRG 252 (255)
Q Consensus 239 ~V~~a~~~~~~~~~ 252 (255)
+|.++.++....++
T Consensus 89 ~v~~a~~~~~~~~~ 102 (106)
T 2dgp_A 89 QVKPADSESRGGSG 102 (106)
T ss_dssp EEEECCCCSCCCCC
T ss_pred EEEECCcccccCCC
Confidence 99999987655443
No 58
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.86 E-value=1.5e-22 Score=140.96 Aligned_cols=82 Identities=20% Similarity=0.432 Sum_probs=73.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCC--CEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 025313 167 KKLFVTGLSFYTSEKTLRAAFEGFG--ELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 244 (255)
Q Consensus 167 ~~l~V~nLp~~~t~~~L~~~F~~fG--~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~ 244 (255)
.+|||+|||+.+++++|+++|++|| .|.+++++.|+.+|+++|||||+|.+.++|++|++.|||..++|++|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 025313 245 TTPK 248 (255)
Q Consensus 245 ~~~~ 248 (255)
+.+.
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7654
No 59
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.8e-21 Score=141.22 Aligned_cols=90 Identities=24% Similarity=0.374 Sum_probs=83.1
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHhcCCCEE--------EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 025313 162 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELV--------EVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKII 233 (255)
Q Consensus 162 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~--------~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l 233 (255)
...+.++|||+|||+.+++++|+++|++||.|. .++|+.++.+|+++|||||+|.+.++|++|++.|||..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345588999999999999999999999999999 699999988999999999999999999999999999999
Q ss_pred CCEEEEEEEecCCCCCCC
Q 025313 234 NGWMIVVDVAKTTPKYSR 251 (255)
Q Consensus 234 ~g~~l~V~~a~~~~~~~~ 251 (255)
.|++|+|.+++++....+
T Consensus 91 ~g~~l~V~~a~~~~~~~~ 108 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPMNS 108 (113)
T ss_dssp TTEECEEECSSCCCCSTT
T ss_pred CCCEEEEEECCCCCCCCC
Confidence 999999999998765444
No 60
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.86 E-value=3.3e-21 Score=144.98 Aligned_cols=89 Identities=27% Similarity=0.444 Sum_probs=82.9
Q ss_pred CCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEE
Q 025313 161 PTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVV 240 (255)
Q Consensus 161 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V 240 (255)
......++|||+|||+.+++++|+++|+.||.|.+|+|++++.+|.++|||||+|.+.++|.+|++.|||..+.|++|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34456789999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred EEecCCCCC
Q 025313 241 DVAKTTPKY 249 (255)
Q Consensus 241 ~~a~~~~~~ 249 (255)
.++++....
T Consensus 117 ~~a~~~~~~ 125 (139)
T 1u6f_A 117 ALAASGHQR 125 (139)
T ss_dssp EESSCCCCC
T ss_pred EECCCCCCC
Confidence 999876543
No 61
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.86 E-value=1.6e-21 Score=140.83 Aligned_cols=86 Identities=31% Similarity=0.446 Sum_probs=81.2
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 242 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~ 242 (255)
..+.++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|+..|||..++|++|+|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 45578999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 025313 243 AKTTPK 248 (255)
Q Consensus 243 a~~~~~ 248 (255)
+.+++.
T Consensus 103 a~~~~~ 108 (110)
T 1oo0_B 103 CFVKGP 108 (110)
T ss_dssp SEESSC
T ss_pred cccCCC
Confidence 987653
No 62
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.86 E-value=1.8e-21 Score=140.20 Aligned_cols=86 Identities=33% Similarity=0.567 Sum_probs=81.2
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 025313 162 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 241 (255)
Q Consensus 162 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~ 241 (255)
...+.++|||+|||..+++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|++|++.|||..++|++|+|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34557899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred EecCCC
Q 025313 242 VAKTTP 247 (255)
Q Consensus 242 ~a~~~~ 247 (255)
+++++.
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 998754
No 63
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=1.5e-21 Score=138.32 Aligned_cols=85 Identities=28% Similarity=0.457 Sum_probs=80.6
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCCEE-EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEE----E
Q 025313 164 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELV-EVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWM----I 238 (255)
Q Consensus 164 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~-~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~----l 238 (255)
.+.++|||+|||+.+++++|+++|++||.|. .++|++++.+|.++|||||+|.+.++|++|++.|||..+.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4588999999999999999999999999999 9999999999999999999999999999999999999999999 9
Q ss_pred EEEEecCCCC
Q 025313 239 VVDVAKTTPK 248 (255)
Q Consensus 239 ~V~~a~~~~~ 248 (255)
+|.||.+...
T Consensus 87 ~v~~a~~~~~ 96 (99)
T 2div_A 87 KLNYATYSGP 96 (99)
T ss_dssp CEEETTCCSS
T ss_pred EEeecCCCCC
Confidence 9999987654
No 64
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=4.4e-21 Score=139.88 Aligned_cols=86 Identities=35% Similarity=0.585 Sum_probs=80.3
Q ss_pred CCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEE
Q 025313 161 PTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVV 240 (255)
Q Consensus 161 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V 240 (255)
....+.++|||+|||+.+++++|+++|++||.|..|+|++++.+|+++|||||+|.+.++|++|++.|++ .|.|++|+|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 3445689999999999999999999999999999999999998999999999999999999999999998 899999999
Q ss_pred EEecCCC
Q 025313 241 DVAKTTP 247 (255)
Q Consensus 241 ~~a~~~~ 247 (255)
.++.+..
T Consensus 91 ~~a~~~~ 97 (116)
T 2cqd_A 91 NLAYLGA 97 (116)
T ss_dssp EESTTTC
T ss_pred EEcccCC
Confidence 9997653
No 65
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.86 E-value=3.2e-22 Score=152.54 Aligned_cols=133 Identities=17% Similarity=0.213 Sum_probs=97.9
Q ss_pred CCccceEEeeeCCHHHHHHHh-CC------CCCceecCCCCCCCCCcCCCCCCCCCCcCCCCCCCCCCCCCccceEEEcC
Q 025313 101 SWQSNFGFCCELDDECAQELT-GV------PGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTG 173 (255)
Q Consensus 101 ~~~~g~aFV~f~~~e~a~~a~-~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~n 173 (255)
...+|+++|+|.++++|++|+ ++ +|.+.+..... +... .................+.++|||+|
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G~~~~~~a~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~l~V~n 80 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATK-----TFTV----TEGSHHHHHHMHRDSCPLDCKVYVGN 80 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCCEEEEETTTT-----EEEE----ECSSSSCCCCSCSSSSTTSCEEEEES
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCCceecccccC-----cccc----ccccccccccccccCCCCCCEEEEeC
Confidence 456899999999999996665 23 33111111100 0000 00000011111233445688999999
Q ss_pred CCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCCC
Q 025313 174 LSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTP 247 (255)
Q Consensus 174 Lp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~~~ 247 (255)
||+.+++++|+++|++||.|.+++++++ ++|||||+|.+.++|.+|+..|||..++|++|+|.++++++
T Consensus 81 l~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 81 LGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp CCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred CCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 9999999999999999999999999876 58999999999999999999999999999999999998764
No 66
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=7.7e-21 Score=135.60 Aligned_cols=90 Identities=27% Similarity=0.461 Sum_probs=81.7
Q ss_pred CCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEE
Q 025313 161 PTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVV 240 (255)
Q Consensus 161 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V 240 (255)
....+.++|||+|||+.+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++|+. +++.++|++|+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v 87 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEE
Confidence 334557899999999999999999999999999999999999899999999999999999999997 578999999999
Q ss_pred EEecCCCCCCCC
Q 025313 241 DVAKTTPKYSRG 252 (255)
Q Consensus 241 ~~a~~~~~~~~~ 252 (255)
.++.++....++
T Consensus 88 ~~a~~~~~~~~~ 99 (103)
T 2cqg_A 88 KLPNSKQSQDSG 99 (103)
T ss_dssp ECCCTTCCCCCS
T ss_pred EecCCCCcCCCC
Confidence 999987655443
No 67
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.86 E-value=2.2e-21 Score=143.11 Aligned_cols=91 Identities=26% Similarity=0.472 Sum_probs=83.5
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 025313 164 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 243 (255)
Q Consensus 164 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a 243 (255)
...++|||+|||+.+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|++|+ .|||..|+|+.|+|.++
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 35789999999999999999999999999999999999889999999999999999999999 89999999999999999
Q ss_pred cCCCCCCCCCCC
Q 025313 244 KTTPKYSRGRPR 255 (255)
Q Consensus 244 ~~~~~~~~~r~r 255 (255)
++......+++|
T Consensus 113 ~~~~~~~~~~~R 124 (124)
T 2jwn_A 113 RTNMPGISSTDR 124 (124)
T ss_dssp SCCCSSCCCSCC
T ss_pred CCCCCCCCCCCC
Confidence 977655444444
No 68
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=8.6e-21 Score=135.33 Aligned_cols=87 Identities=28% Similarity=0.381 Sum_probs=79.1
Q ss_pred CCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEE
Q 025313 161 PTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVV 240 (255)
Q Consensus 161 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V 240 (255)
....+.++|||+|||+.+++++|+++|++||.|..|+|+.++ +.++|||||+|.+.++|++|+..|||..+.|++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH--TSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCC--CSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecC--CCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 344568999999999999999999999999999999999985 337999999999999999999999999999999999
Q ss_pred EEecCCCCC
Q 025313 241 DVAKTTPKY 249 (255)
Q Consensus 241 ~~a~~~~~~ 249 (255)
.+++++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cqi_A 88 NWATTPSSQ 96 (103)
T ss_dssp EECCCTTCC
T ss_pred EECCCCccc
Confidence 999986543
No 69
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=9.1e-21 Score=137.70 Aligned_cols=83 Identities=22% Similarity=0.347 Sum_probs=78.6
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 242 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~ 242 (255)
..+.++|||+|||+.+++++|+++|++||.|..++|+.++ +|.++|||||+|.+.++|++|++.|||..|.|++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3457899999999999999999999999999999999998 699999999999999999999999999999999999999
Q ss_pred ecCC
Q 025313 243 AKTT 246 (255)
Q Consensus 243 a~~~ 246 (255)
++..
T Consensus 91 a~~~ 94 (114)
T 2do0_A 91 DERA 94 (114)
T ss_dssp CSCC
T ss_pred cccC
Confidence 9754
No 70
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.3e-20 Score=134.40 Aligned_cols=88 Identities=26% Similarity=0.519 Sum_probs=80.0
Q ss_pred CCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEE
Q 025313 161 PTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVV 240 (255)
Q Consensus 161 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V 240 (255)
....+.++|||+|||+.+++++|+++|++||.|..|+|+.+.. .++|||||+|.+.++|++|+..|||..|+|++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3445689999999999999999999999999999999999863 38999999999999999999999999999999999
Q ss_pred EEecCCCCCC
Q 025313 241 DVAKTTPKYS 250 (255)
Q Consensus 241 ~~a~~~~~~~ 250 (255)
.++.++....
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2cq3_A 88 NNATARVMTN 97 (103)
T ss_dssp EECCSSCCCC
T ss_pred EEcccCCCCC
Confidence 9999876443
No 71
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.86 E-value=6e-21 Score=139.55 Aligned_cols=84 Identities=25% Similarity=0.408 Sum_probs=78.8
Q ss_pred CCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEE
Q 025313 161 PTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVV 240 (255)
Q Consensus 161 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V 240 (255)
....+.++|||+|||+.+++++|+++|++||.|..++|++++.+|+++|||||+|.+.++|++|++.|||..++|++|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 33456789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEec
Q 025313 241 DVAK 244 (255)
Q Consensus 241 ~~a~ 244 (255)
.+++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9975
No 72
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.86 E-value=3.6e-21 Score=135.21 Aligned_cols=83 Identities=25% Similarity=0.360 Sum_probs=78.3
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 025313 162 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 241 (255)
Q Consensus 162 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~ 241 (255)
...+.++|||+|||+.+++++|+++|++||.|..+.|+.++ +|.++|||||+|.+.++|++|++.|||..+.|++|+|.
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 34568999999999999999999999999999999999998 49999999999999999999999999999999999999
Q ss_pred EecC
Q 025313 242 VAKT 245 (255)
Q Consensus 242 ~a~~ 245 (255)
++++
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9874
No 73
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.86 E-value=5e-22 Score=141.11 Aligned_cols=83 Identities=20% Similarity=0.372 Sum_probs=79.1
Q ss_pred ccceEEEcCCCC------CCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC-EE
Q 025313 165 KTKKLFVTGLSF------YTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIING-WM 237 (255)
Q Consensus 165 ~~~~l~V~nLp~------~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g-~~ 237 (255)
..++|||+|||+ .+++++|+++|++||.|.+++|++|+.+|+++|||||+|.+.++|++|++.|||..+.| ++
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 478999999999 99999999999999999999999999899999999999999999999999999999999 99
Q ss_pred EEEEEecCCC
Q 025313 238 IVVDVAKTTP 247 (255)
Q Consensus 238 l~V~~a~~~~ 247 (255)
|+|.++.+..
T Consensus 85 l~V~~a~~~~ 94 (100)
T 3ns6_A 85 LFLYTMKDVE 94 (100)
T ss_dssp CEEEESHHHH
T ss_pred EEEEECchhh
Confidence 9999997643
No 74
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=2.9e-21 Score=138.30 Aligned_cols=89 Identities=26% Similarity=0.468 Sum_probs=82.3
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 025313 162 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 241 (255)
Q Consensus 162 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~ 241 (255)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++|+.. ||..|+|++|+|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 345689999999999999999999999999999999999998999999999999999999999988 9999999999999
Q ss_pred EecCCCCCCC
Q 025313 242 VAKTTPKYSR 251 (255)
Q Consensus 242 ~a~~~~~~~~ 251 (255)
++.++.....
T Consensus 91 ~a~~~~~~~~ 100 (105)
T 2dh8_A 91 PCTPRGMQPS 100 (105)
T ss_dssp CSCCSSCCTT
T ss_pred EccCCCCCCC
Confidence 9987764433
No 75
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=4e-21 Score=140.07 Aligned_cols=90 Identities=30% Similarity=0.545 Sum_probs=82.8
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 242 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~ 242 (255)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++|++. +|..|+|++|+|.+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 44578999999999999999999999999999999999998999999999999999999999977 99999999999999
Q ss_pred ecCCCCCCCCC
Q 025313 243 AKTTPKYSRGR 253 (255)
Q Consensus 243 a~~~~~~~~~r 253 (255)
+.++....+++
T Consensus 103 a~~~~~~~~~~ 113 (116)
T 1x4b_A 103 AVAREESGSGP 113 (116)
T ss_dssp CSSCCCCCCSC
T ss_pred CCCCccCCCCC
Confidence 99876554443
No 76
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.86 E-value=3.7e-21 Score=133.44 Aligned_cols=81 Identities=27% Similarity=0.550 Sum_probs=77.9
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 025313 165 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 244 (255)
Q Consensus 165 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~ 244 (255)
..++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|+ .|||..+.|++|+|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 4689999999999999999999999999999999999989999999999999999999999 999999999999999998
Q ss_pred CC
Q 025313 245 TT 246 (255)
Q Consensus 245 ~~ 246 (255)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 77
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.86 E-value=4.6e-21 Score=133.88 Aligned_cols=84 Identities=26% Similarity=0.409 Sum_probs=78.8
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 025313 164 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 243 (255)
Q Consensus 164 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a 243 (255)
.+.++|||+|||+.+++++|+++|++||.|..+.+.++ +|.++|||||+|.+.++|++|++.|||..++|++|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45789999999999999999999999999999999985 8999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 025313 244 KTTPKY 249 (255)
Q Consensus 244 ~~~~~~ 249 (255)
++....
T Consensus 84 ~~~~~~ 89 (92)
T 2dgv_A 84 RNASGP 89 (92)
T ss_dssp SCCSSC
T ss_pred CCCCCC
Confidence 876543
No 78
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.85 E-value=3.4e-21 Score=133.32 Aligned_cols=83 Identities=24% Similarity=0.460 Sum_probs=77.9
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCC-cceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 025313 165 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKR-SKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 243 (255)
Q Consensus 165 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~-~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a 243 (255)
..++|||+|||+.+++++|+++|++||.|..+.++.+..++. ++|||||+|.+.++|++|++.|||..++|++|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 368999999999999999999999999999999999987766 9999999999999999999999999999999999999
Q ss_pred cCCC
Q 025313 244 KTTP 247 (255)
Q Consensus 244 ~~~~ 247 (255)
.++.
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 79
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=3.7e-21 Score=137.48 Aligned_cols=85 Identities=25% Similarity=0.344 Sum_probs=80.1
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhc-CCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce-eCCEEEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEG-FGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKI-INGWMIVV 240 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~-fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~-l~g~~l~V 240 (255)
..+.++|||+|||+.+++++|+++|++ ||.|..+.|+.++ +|.++|||||+|.+.++|.+|++.|||.. ++|++|+|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 345789999999999999999999999 9999999999999 99999999999999999999999999999 99999999
Q ss_pred EEecCCCC
Q 025313 241 DVAKTTPK 248 (255)
Q Consensus 241 ~~a~~~~~ 248 (255)
.++.++..
T Consensus 85 ~~a~~~~~ 92 (104)
T 2dhg_A 85 SVAIPKAS 92 (104)
T ss_dssp CBCCCCCS
T ss_pred EEccCCCc
Confidence 99987653
No 80
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.85 E-value=9.1e-21 Score=136.14 Aligned_cols=82 Identities=27% Similarity=0.421 Sum_probs=78.3
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 242 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~ 242 (255)
..+.++|||+|||+.+++++|+++|++||.|..+.|+.++ +|.++|||||+|.+.++|++|++.|||..+.|++|+|.+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3558899999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred ecC
Q 025313 243 AKT 245 (255)
Q Consensus 243 a~~ 245 (255)
+.+
T Consensus 105 a~s 107 (107)
T 3ulh_A 105 VTS 107 (107)
T ss_dssp ECC
T ss_pred eCC
Confidence 863
No 81
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.85 E-value=8.2e-21 Score=131.21 Aligned_cols=80 Identities=34% Similarity=0.552 Sum_probs=75.5
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 242 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~ 242 (255)
..+.++|||+|||+.+++++|+++|++||.|..+.+++++.+|+++|||||+|.+.++|++|+ .+++..++|++|+|.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL-DQKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHH-HSSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHH-HhCCCEECCEEEEEEe
Confidence 445889999999999999999999999999999999999989999999999999999999999 5688999999999998
Q ss_pred e
Q 025313 243 A 243 (255)
Q Consensus 243 a 243 (255)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 6
No 82
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.85 E-value=2.7e-21 Score=143.09 Aligned_cols=85 Identities=29% Similarity=0.473 Sum_probs=80.5
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 242 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~ 242 (255)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++|++.|||..|+|+.|+|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34578999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 025313 243 AKTTP 247 (255)
Q Consensus 243 a~~~~ 247 (255)
+.+..
T Consensus 99 a~~~~ 103 (126)
T 3ex7_B 99 CFVRG 103 (126)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 98654
No 83
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=8.3e-21 Score=133.72 Aligned_cols=83 Identities=18% Similarity=0.189 Sum_probs=76.8
Q ss_pred CccceEEEcCCCCCCCHHHHH----HHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEE
Q 025313 164 IKTKKLFVTGLSFYTSEKTLR----AAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIV 239 (255)
Q Consensus 164 ~~~~~l~V~nLp~~~t~~~L~----~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~ 239 (255)
...++|||+|||+.+++++|+ ++|++||.|.+|+|+.|+.+ +|||||+|.+.++|++|++.|||..++|++|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 347899999999999999999 99999999999999999754 88999999999999999999999999999999
Q ss_pred EEEecCCCCC
Q 025313 240 VDVAKTTPKY 249 (255)
Q Consensus 240 V~~a~~~~~~ 249 (255)
|.+|++.+..
T Consensus 84 V~~a~~~~~~ 93 (96)
T 2dgx_A 84 VSLATGASGP 93 (96)
T ss_dssp EEECCCSSCC
T ss_pred EEEcCCCCCC
Confidence 9999876543
No 84
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.85 E-value=2.9e-21 Score=143.47 Aligned_cols=86 Identities=35% Similarity=0.548 Sum_probs=81.2
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 025313 162 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 241 (255)
Q Consensus 162 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~ 241 (255)
...+.++|||+|||+.+++++|+++|++||.|..|+|+.++.+|.++|||||+|.+.++|++|++.|||..|+|++|+|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34557899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred EecCCC
Q 025313 242 VAKTTP 247 (255)
Q Consensus 242 ~a~~~~ 247 (255)
++.+++
T Consensus 122 ~a~~~~ 127 (129)
T 2kxn_B 122 FSITKR 127 (129)
T ss_dssp CCSSSS
T ss_pred EecCCC
Confidence 998754
No 85
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=3.7e-21 Score=136.00 Aligned_cols=84 Identities=14% Similarity=0.201 Sum_probs=79.1
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 025313 164 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 243 (255)
Q Consensus 164 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a 243 (255)
...++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|++.|||..|+|++|+|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 44789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred cCCC
Q 025313 244 KTTP 247 (255)
Q Consensus 244 ~~~~ 247 (255)
..+.
T Consensus 93 ~~~~ 96 (98)
T 2cqp_A 93 SGPS 96 (98)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 7543
No 86
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.3e-20 Score=134.54 Aligned_cols=87 Identities=15% Similarity=0.305 Sum_probs=78.5
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 025313 162 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 241 (255)
Q Consensus 162 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~ 241 (255)
...+.++|||+|||+.+++++|+++|++||.|..+.|..+ +.++|||||+|.+.++|++|++.|||..|.|++|+|.
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3445789999999999999999999999999999999654 5689999999999999999999999999999999999
Q ss_pred EecCCCCCCC
Q 025313 242 VAKTTPKYSR 251 (255)
Q Consensus 242 ~a~~~~~~~~ 251 (255)
++++..+..+
T Consensus 95 ~a~~~~~~~~ 104 (109)
T 1x4a_A 95 FPRSGRGTGS 104 (109)
T ss_dssp CCCCCCCCCC
T ss_pred EcccCCCCCC
Confidence 9998765444
No 87
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.5e-20 Score=130.99 Aligned_cols=83 Identities=24% Similarity=0.419 Sum_probs=78.0
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 242 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~ 242 (255)
....++|||+|||+.+++++|+++|++| .|..++|+++ .+|+++|||||+|.+.++|++|+. |||..|+|++|+|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 3457899999999999999999999999 9999999999 699999999999999999999998 999999999999999
Q ss_pred ecCCCC
Q 025313 243 AKTTPK 248 (255)
Q Consensus 243 a~~~~~ 248 (255)
+.+++.
T Consensus 84 a~~~~~ 89 (91)
T 2dgw_A 84 EKSGPS 89 (91)
T ss_dssp ESSCCC
T ss_pred CCcCCC
Confidence 987754
No 88
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.85 E-value=6.5e-21 Score=137.43 Aligned_cols=87 Identities=26% Similarity=0.439 Sum_probs=77.4
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 025313 162 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 241 (255)
Q Consensus 162 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~ 241 (255)
...+.++|||+|||+.+++++|+++|++||.|..|+|++++.+|.++|||||+|.+.++|++|+..+ |..++|+.|+|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 3456789999999999999999999999999999999999989999999999999999999999876 599999999999
Q ss_pred EecCCCCC
Q 025313 242 VAKTTPKY 249 (255)
Q Consensus 242 ~a~~~~~~ 249 (255)
++.+++.+
T Consensus 100 ~a~~~~~~ 107 (109)
T 2rs2_A 100 VAFPRRAQ 107 (109)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99876543
No 89
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.4e-21 Score=137.34 Aligned_cols=81 Identities=14% Similarity=0.281 Sum_probs=76.3
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 242 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~ 242 (255)
....++|||+|||+.+|+++|+++|++||.|.+|.|++|+. |.++|||||+|.+.++|++|+. ++|..++|+.|.|.+
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 34578999999999999999999999999999999999986 9999999999999999999997 999999999999999
Q ss_pred ecC
Q 025313 243 AKT 245 (255)
Q Consensus 243 a~~ 245 (255)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 765
No 90
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.3e-21 Score=138.54 Aligned_cols=85 Identities=27% Similarity=0.568 Sum_probs=80.8
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 242 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~ 242 (255)
..+.++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++.|||..++|++|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 34578999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 025313 243 AKTTP 247 (255)
Q Consensus 243 a~~~~ 247 (255)
+.++.
T Consensus 85 a~~~~ 89 (104)
T 1p1t_A 85 AASEK 89 (104)
T ss_dssp TTCTT
T ss_pred CCCcc
Confidence 98764
No 91
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.84 E-value=2e-20 Score=143.48 Aligned_cols=84 Identities=29% Similarity=0.504 Sum_probs=80.4
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 025313 164 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 243 (255)
Q Consensus 164 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a 243 (255)
.+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|+..|||..|.|++|+|.||
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 025313 244 KTTP 247 (255)
Q Consensus 244 ~~~~ 247 (255)
++..
T Consensus 117 ~~~~ 120 (156)
T 1h2v_Z 117 AGFK 120 (156)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8654
No 92
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.84 E-value=8.4e-21 Score=145.41 Aligned_cols=82 Identities=26% Similarity=0.470 Sum_probs=77.7
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCC--CEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 025313 165 KTKKLFVTGLSFYTSEKTLRAAFEGFG--ELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 242 (255)
Q Consensus 165 ~~~~l~V~nLp~~~t~~~L~~~F~~fG--~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~ 242 (255)
..++|||+|||+.+++++|+++|++|| .|.+|+|+.|+.+|+++|||||+|.+.++|++|+..|||..|+|++|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ecCC
Q 025313 243 AKTT 246 (255)
Q Consensus 243 a~~~ 246 (255)
+.+.
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9753
No 93
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=6.5e-21 Score=135.35 Aligned_cols=81 Identities=20% Similarity=0.307 Sum_probs=73.6
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC--CceeCCEEEE
Q 025313 162 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMN--GKIINGWMIV 239 (255)
Q Consensus 162 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~--g~~l~g~~l~ 239 (255)
.+.+.++|||+|||+.+++++|+++|++||.|.+|+|+++ ||||||+|++.++|++|++.|+ +..|.|++|+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3456889999999999999999999999999999999865 6899999999999999999886 4789999999
Q ss_pred EEEecCCCC
Q 025313 240 VDVAKTTPK 248 (255)
Q Consensus 240 V~~a~~~~~ 248 (255)
|.+|++++.
T Consensus 86 V~~A~~~~~ 94 (105)
T 1sjq_A 86 IQFSNHKEL 94 (105)
T ss_dssp BCCCSSSSC
T ss_pred EEEcCCCCC
Confidence 999987653
No 94
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=7.6e-21 Score=138.16 Aligned_cols=85 Identities=25% Similarity=0.463 Sum_probs=79.9
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 025313 162 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 241 (255)
Q Consensus 162 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~ 241 (255)
.....++|||+|||+.+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++|+ .|||..|+|+.|+|.
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 99 (114)
T 2cq4_A 21 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQ 99 (114)
T ss_dssp THHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEE
Confidence 3455789999999999999999999999999999999999989999999999999999999999 999999999999999
Q ss_pred EecCCC
Q 025313 242 VAKTTP 247 (255)
Q Consensus 242 ~a~~~~ 247 (255)
++.++.
T Consensus 100 ~a~~~~ 105 (114)
T 2cq4_A 100 ASQAEK 105 (114)
T ss_dssp EHHHHH
T ss_pred ecCCCc
Confidence 998653
No 95
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.9e-20 Score=133.12 Aligned_cols=87 Identities=31% Similarity=0.441 Sum_probs=77.8
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 025313 162 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 241 (255)
Q Consensus 162 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~ 241 (255)
...+.++|||+|||+.+++++|+++|++||.| +++.+ .+|+++|||||+|.+.++|++|++.|||..|.|++|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 34568999999999999999999999999987 56666 489999999999999999999999999999999999999
Q ss_pred EecCCCCCCCC
Q 025313 242 VAKTTPKYSRG 252 (255)
Q Consensus 242 ~a~~~~~~~~~ 252 (255)
+++++.+..++
T Consensus 87 ~a~~~~~~~~~ 97 (101)
T 2fc9_A 87 LQGPRGSPNSG 97 (101)
T ss_dssp ECSSCCCCCCC
T ss_pred EcCCCCCCCCC
Confidence 99987655443
No 96
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.4e-20 Score=132.78 Aligned_cols=90 Identities=34% Similarity=0.525 Sum_probs=80.2
Q ss_pred CCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEE
Q 025313 161 PTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVV 240 (255)
Q Consensus 161 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V 240 (255)
....+.++|||+|||+.+++++|+++|+.|+ .+.++.++.+|.++|||||+|.+.++|++|++.|||..|.|++|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3445688999999999999999999999874 6788888889999999999999999999999999999999999999
Q ss_pred EEecCCCCCCCCC
Q 025313 241 DVAKTTPKYSRGR 253 (255)
Q Consensus 241 ~~a~~~~~~~~~r 253 (255)
.+++++....++.
T Consensus 87 ~~a~~~~~~~~~~ 99 (102)
T 2fc8_A 87 DWAKPKGEGGSGP 99 (102)
T ss_dssp EECCCCCSSSCSC
T ss_pred EEecCCCCCCCCC
Confidence 9999876654443
No 97
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.84 E-value=1.7e-21 Score=138.37 Aligned_cols=85 Identities=21% Similarity=0.401 Sum_probs=76.1
Q ss_pred CCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecC-CCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEE
Q 025313 161 PTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDK-ISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIV 239 (255)
Q Consensus 161 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~-~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~ 239 (255)
......++|||+|||+.+++++|+++|++|| |.+++|+.++ .+|+++|||||+|.+.++|.+|+ .|||..++|+.|+
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 3345689999999999999999999999999 9999999998 68999999999999999999999 9999999999999
Q ss_pred EEEecCCC
Q 025313 240 VDVAKTTP 247 (255)
Q Consensus 240 V~~a~~~~ 247 (255)
|.++++++
T Consensus 92 V~~a~~~~ 99 (100)
T 2j76_E 92 VDVADQAQ 99 (100)
T ss_dssp CEECCCSC
T ss_pred EEeccCCC
Confidence 99998764
No 98
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.84 E-value=3.6e-21 Score=135.25 Aligned_cols=82 Identities=15% Similarity=0.209 Sum_probs=76.6
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 025313 164 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 243 (255)
Q Consensus 164 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a 243 (255)
.+.++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|++.|||..++|++|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 34689999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred cC
Q 025313 244 KT 245 (255)
Q Consensus 244 ~~ 245 (255)
.+
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 64
No 99
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.8e-20 Score=135.55 Aligned_cols=87 Identities=21% Similarity=0.305 Sum_probs=79.3
Q ss_pred CCccceEEEcCCCCCCCHHHHH---HHHhcCCCEEEEEEEecCCCC---CcceEEEEEeCCHHHHHHHHHHhCCceeCCE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLR---AAFEGFGELVEVKIIMDKISK---RSKGYAFIEYTTEEAASAALKEMNGKIINGW 236 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~---~~F~~fG~i~~v~i~~d~~~g---~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~ 236 (255)
....++|||+|||+.+++++|+ ++|++||.|..+.|.++..++ +++|||||+|.+.++|++|++.|||..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3447899999999999999999 999999999999999987654 5669999999999999999999999999999
Q ss_pred EEEEEEecCCCCC
Q 025313 237 MIVVDVAKTTPKY 249 (255)
Q Consensus 237 ~l~V~~a~~~~~~ 249 (255)
+|+|.+|.+++..
T Consensus 92 ~l~V~~a~~k~~~ 104 (111)
T 2cpi_A 92 TLKASLGTTKYCS 104 (111)
T ss_dssp EEEEESCCCCSCS
T ss_pred EEEEEeccccccc
Confidence 9999999987643
No 100
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.1e-21 Score=134.96 Aligned_cols=81 Identities=23% Similarity=0.440 Sum_probs=76.9
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 025313 164 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 243 (255)
Q Consensus 164 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a 243 (255)
.++++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++.|||..+.|+.|+++++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 35789999999999999999999999999999999999989999999999999999999999999999999999988775
Q ss_pred c
Q 025313 244 K 244 (255)
Q Consensus 244 ~ 244 (255)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 101
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.84 E-value=1.3e-19 Score=133.57 Aligned_cols=86 Identities=24% Similarity=0.366 Sum_probs=80.8
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 025313 162 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 241 (255)
Q Consensus 162 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~ 241 (255)
.....++|||+|||+.+++++|+++|++||.|..++|..++ +|+++|||||+|.+.++|++|+..|||..++|++|+|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34557899999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred EecCCCC
Q 025313 242 VAKTTPK 248 (255)
Q Consensus 242 ~a~~~~~ 248 (255)
+|.+...
T Consensus 110 ~a~~~~~ 116 (124)
T 2kt5_A 110 LVASQID 116 (124)
T ss_dssp EECCTTC
T ss_pred EeCCCCC
Confidence 9987643
No 102
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.1e-20 Score=136.27 Aligned_cols=85 Identities=27% Similarity=0.581 Sum_probs=78.3
Q ss_pred CCCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEE
Q 025313 160 SPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIV 239 (255)
Q Consensus 160 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~ 239 (255)
.......++|||+|||..+++++|+++|++||.|..+++..++ +.++|||||+|.+.++|++|++.|||..++|++|+
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 100 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 100 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3445568899999999999999999999999999999999985 45899999999999999999999999999999999
Q ss_pred EEEecCC
Q 025313 240 VDVAKTT 246 (255)
Q Consensus 240 V~~a~~~ 246 (255)
|.+++++
T Consensus 101 V~~a~~~ 107 (109)
T 2err_A 101 VNNATAR 107 (109)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 9999865
No 103
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.84 E-value=3.3e-21 Score=143.64 Aligned_cols=85 Identities=24% Similarity=0.386 Sum_probs=79.7
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEE--EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc----eeCC
Q 025313 162 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVE--VKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGK----IING 235 (255)
Q Consensus 162 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~--v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~----~l~g 235 (255)
.....++|||+|||+.+++++|+++|++||.|.. |+|++|+.+|+++|||||+|.+. +|.+|+..|||. .+.|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3456789999999999999999999999999976 99999999999999999999999 999999999999 9999
Q ss_pred EEEEEEEecCCC
Q 025313 236 WMIVVDVAKTTP 247 (255)
Q Consensus 236 ~~l~V~~a~~~~ 247 (255)
++|+|.++++..
T Consensus 98 r~l~V~~a~~~~ 109 (131)
T 2m2b_A 98 KTINVEFAKGSK 109 (131)
T ss_dssp CCCCCEECCCSC
T ss_pred EEEEEEECCCCC
Confidence 999999998764
No 104
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.84 E-value=3.2e-21 Score=129.50 Aligned_cols=75 Identities=28% Similarity=0.542 Sum_probs=72.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 025313 168 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 243 (255)
Q Consensus 168 ~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a 243 (255)
+|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++ |||..++|++|+|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999999899999999999999999999996 9999999999999886
No 105
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.4e-20 Score=133.47 Aligned_cols=82 Identities=20% Similarity=0.208 Sum_probs=73.2
Q ss_pred CccceEEEcCCCC-CCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC--ceeCCEEEEE
Q 025313 164 IKTKKLFVTGLSF-YTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNG--KIINGWMIVV 240 (255)
Q Consensus 164 ~~~~~l~V~nLp~-~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g--~~l~g~~l~V 240 (255)
.+.++|||+|||+ .+++++|+++|++||.|.+|.|+++ +|||||+|++.++|.+|++.||+ ..|.|++|+|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3588999999999 9999999999999999999999865 57999999999999999999986 4599999999
Q ss_pred EEecCCCCCCC
Q 025313 241 DVAKTTPKYSR 251 (255)
Q Consensus 241 ~~a~~~~~~~~ 251 (255)
.+|+...+...
T Consensus 87 ~~a~~~~~~~~ 97 (102)
T 1x4d_A 87 HLSQKYKRIKS 97 (102)
T ss_dssp EEECCCTTSSC
T ss_pred EECCCCCCCCC
Confidence 99997654433
No 106
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.6e-20 Score=133.65 Aligned_cols=84 Identities=19% Similarity=0.257 Sum_probs=77.1
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 242 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~ 242 (255)
....++|||+|||+.+++++|+++|++||. ..|.|+.|+ +|+++|||||+|.+.++|++|+ .+|+..|+|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEE
Confidence 345789999999999999999999999995 499999998 9999999999999999999999 6899999999999999
Q ss_pred ecCCCCC
Q 025313 243 AKTTPKY 249 (255)
Q Consensus 243 a~~~~~~ 249 (255)
+.+....
T Consensus 89 ~~~~~~~ 95 (102)
T 1wez_A 89 NSTAGTS 95 (102)
T ss_dssp ECCCCCC
T ss_pred CCCCCCC
Confidence 9876544
No 107
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.83 E-value=4e-20 Score=139.07 Aligned_cols=83 Identities=33% Similarity=0.569 Sum_probs=78.1
Q ss_pred CCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEE
Q 025313 161 PTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVV 240 (255)
Q Consensus 161 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V 240 (255)
....+.++|||+|||..+++++|+++|++||.|..+++++++.+|+++|||||+|.+.++|++|++.|||..++|++|+|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34456899999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEe
Q 025313 241 DVA 243 (255)
Q Consensus 241 ~~a 243 (255)
.+|
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 986
No 108
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.83 E-value=2.9e-20 Score=130.75 Aligned_cols=79 Identities=20% Similarity=0.237 Sum_probs=72.1
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce--eCCEEEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKI--INGWMIVV 240 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~--l~g~~l~V 240 (255)
..++++|||+|||+.+++++|+++|++||.|.++++++ +||+|||+|++.++|.+|+..|+|.. +.|++|+|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 34688999999999999999999999999999999985 37899999999999999999999875 88999999
Q ss_pred EEecCCC
Q 025313 241 DVAKTTP 247 (255)
Q Consensus 241 ~~a~~~~ 247 (255)
++|+++.
T Consensus 92 ~~S~~k~ 98 (100)
T 3r27_A 92 NYSTSQK 98 (100)
T ss_dssp EECSCSC
T ss_pred Eeccccc
Confidence 9998653
No 109
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.1e-20 Score=134.72 Aligned_cols=85 Identities=21% Similarity=0.348 Sum_probs=78.9
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCC-EEEEEEE-ecCCCCCcceEEEEEeCCHHHHHHHHHHhC--CceeCCEEEE
Q 025313 164 IKTKKLFVTGLSFYTSEKTLRAAFEGFGE-LVEVKII-MDKISKRSKGYAFIEYTTEEAASAALKEMN--GKIINGWMIV 239 (255)
Q Consensus 164 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~-i~~v~i~-~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~--g~~l~g~~l~ 239 (255)
.+.++|||+|||+.+++++|+++|++||. |..+.++ .++.+|.++|||||+|.+.++|++|++.|| +..+.|++|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 34789999999999999999999999998 9999998 888889999999999999999999999996 5899999999
Q ss_pred EEEecCCCC
Q 025313 240 VDVAKTTPK 248 (255)
Q Consensus 240 V~~a~~~~~ 248 (255)
|.++.++..
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999987653
No 110
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=9.9e-20 Score=129.09 Aligned_cols=79 Identities=20% Similarity=0.216 Sum_probs=72.3
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh--CCceeCCEEEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEM--NGKIINGWMIVV 240 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l--~g~~l~g~~l~V 240 (255)
..+.++|||+|||+.+++++|+++|++||.|.++.++++ ||||||+|++.++|.+|++.| ++..+.|++|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 345789999999999999999999999999999998864 789999999999999999977 578899999999
Q ss_pred EEecCCC
Q 025313 241 DVAKTTP 247 (255)
Q Consensus 241 ~~a~~~~ 247 (255)
.+++++.
T Consensus 86 ~~a~~~~ 92 (101)
T 2cq1_A 86 QYSNHKE 92 (101)
T ss_dssp EECSCSS
T ss_pred EEcCccc
Confidence 9998765
No 111
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.83 E-value=3e-20 Score=126.31 Aligned_cols=74 Identities=24% Similarity=0.318 Sum_probs=69.9
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 025313 165 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 244 (255)
Q Consensus 165 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~ 244 (255)
.+.-|||+||++.+|+++|+++|.+||+|.++.+.. ++|||||+|.++++|++|++.|||..+.|++|+|.+|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 366799999999999999999999999999999864 68999999999999999999999999999999999984
No 112
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.9e-20 Score=131.67 Aligned_cols=83 Identities=23% Similarity=0.337 Sum_probs=76.7
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCCEEE-EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVE-VKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 241 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~-v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~ 241 (255)
.....+|||+|||+.+++++|+++|++||.|.. +.|+.+ .+|+++|||||+|.+.++|++|+.. ||..++|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 345789999999999999999999999999997 889888 5999999999999999999999976 9999999999999
Q ss_pred EecCCC
Q 025313 242 VAKTTP 247 (255)
Q Consensus 242 ~a~~~~ 247 (255)
++....
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 987654
No 113
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.3e-19 Score=130.45 Aligned_cols=78 Identities=18% Similarity=0.299 Sum_probs=73.1
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC-----EE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIING-----WM 237 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g-----~~ 237 (255)
....++|||+|||+.+++++|+++|++||.|..|.|+.+ |||||+|.+.++|++|++.|||..|.| ++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 345789999999999999999999999999999999876 799999999999999999999999999 99
Q ss_pred EEEEEecCCC
Q 025313 238 IVVDVAKTTP 247 (255)
Q Consensus 238 l~V~~a~~~~ 247 (255)
|+|.++.++.
T Consensus 85 i~V~~a~~~~ 94 (108)
T 1x4c_A 85 IRVKVDGPRS 94 (108)
T ss_dssp EEEEESSCCS
T ss_pred EEEEeCCCCC
Confidence 9999998764
No 114
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.82 E-value=2e-20 Score=134.92 Aligned_cols=81 Identities=20% Similarity=0.210 Sum_probs=72.4
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCC-CEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 025313 164 IKTKKLFVTGLSFYTSEKTLRAAFEGFG-ELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 242 (255)
Q Consensus 164 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG-~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~ 242 (255)
....+|||+|||+.+++++|+++|++|| .|..+.+.. +.++|||||+|.+.++|++|++.|||..++|++|+|.+
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3478999999999999999999999999 899998863 35899999999999999999999999999999999999
Q ss_pred ecCCCC
Q 025313 243 AKTTPK 248 (255)
Q Consensus 243 a~~~~~ 248 (255)
+..++.
T Consensus 102 a~~~p~ 107 (111)
T 2jvr_A 102 DDNPPP 107 (111)
T ss_dssp SCC---
T ss_pred CCCCCC
Confidence 986653
No 115
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.82 E-value=2.9e-20 Score=133.12 Aligned_cols=83 Identities=19% Similarity=0.280 Sum_probs=76.2
Q ss_pred CccceEEEcCCCCCC------CHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCE-
Q 025313 164 IKTKKLFVTGLSFYT------SEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGW- 236 (255)
Q Consensus 164 ~~~~~l~V~nLp~~~------t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~- 236 (255)
...++|||+|||+.+ ++++|+++|++||.|..+.|++ .+|+++|||||+|.+.++|.+|+..|||..++|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 347899999999999 7899999999999999999883 4899999999999999999999999999999998
Q ss_pred EEEEEEecCCCC
Q 025313 237 MIVVDVAKTTPK 248 (255)
Q Consensus 237 ~l~V~~a~~~~~ 248 (255)
+|+|.++....+
T Consensus 91 ~l~V~~a~~~~k 102 (105)
T 2nlw_A 91 TFRVNLFTDFDK 102 (105)
T ss_dssp EEEEECSCCCCC
T ss_pred eEEEEEcchHhh
Confidence 999999986554
No 116
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=7.3e-21 Score=128.31 Aligned_cols=76 Identities=30% Similarity=0.555 Sum_probs=73.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 025313 167 KKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 243 (255)
Q Consensus 167 ~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a 243 (255)
++|||+|||+.+++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|++|++.++ ..++|++|+|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999999899999999999999999999999999 9999999999987
No 117
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=9e-20 Score=132.44 Aligned_cols=83 Identities=22% Similarity=0.439 Sum_probs=77.9
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee--------C
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKII--------N 234 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l--------~ 234 (255)
..+.++|||+|||+.+++++|+++|++||.|..++|+.++ +|.++|||||+|.+.++|++|+..|||..+ .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3457899999999999999999999999999999999998 999999999999999999999999999999 5
Q ss_pred CEEEEEEEecCC
Q 025313 235 GWMIVVDVAKTT 246 (255)
Q Consensus 235 g~~l~V~~a~~~ 246 (255)
+++|.|.|+.++
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 788999999854
No 118
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=9.4e-20 Score=126.69 Aligned_cols=82 Identities=30% Similarity=0.513 Sum_probs=74.9
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 242 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~ 242 (255)
..+.++|||+|||+.+++++|+++|++||.|..+.+. +|||||+|.+.++|++|+..|||..++|++|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 3457899999999999999999999999999999997 57999999999999999999999999999999999
Q ss_pred ecCCCCCCCC
Q 025313 243 AKTTPKYSRG 252 (255)
Q Consensus 243 a~~~~~~~~~ 252 (255)
++++.+..++
T Consensus 77 a~~~~~~~~~ 86 (90)
T 2dnq_A 77 SKNKSKASSG 86 (90)
T ss_dssp SSCCCCCCSS
T ss_pred CCCCCCCCCC
Confidence 9987655443
No 119
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.82 E-value=3.2e-21 Score=134.17 Aligned_cols=81 Identities=26% Similarity=0.531 Sum_probs=74.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCC
Q 025313 167 KKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTT 246 (255)
Q Consensus 167 ~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~~ 246 (255)
++|||+|||..+++++|+++|++||.|.++.+.+++.+|.++|||||+|.+.+ |.+|+..|||..++|++|+|.+|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 57999999999999999999999999999999999989999999999999999 99999999999999999999999876
Q ss_pred CC
Q 025313 247 PK 248 (255)
Q Consensus 247 ~~ 248 (255)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 120
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.5e-20 Score=135.49 Aligned_cols=83 Identities=18% Similarity=0.271 Sum_probs=77.4
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHhcCCCE-EEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEE
Q 025313 162 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGEL-VEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVV 240 (255)
Q Consensus 162 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i-~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V 240 (255)
...+.++|||+|||+.+++++|+++|++||.| ..|+|+.|+ +|+++|||||+|.+.++|++|++. ||..|+|++|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 34457899999999999999999999999999 899999999 999999999999999999999966 999999999999
Q ss_pred EEecCC
Q 025313 241 DVAKTT 246 (255)
Q Consensus 241 ~~a~~~ 246 (255)
.++.++
T Consensus 89 ~~a~~~ 94 (114)
T 2cpy_A 89 HVVTLE 94 (114)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 999754
No 121
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.3e-20 Score=135.79 Aligned_cols=88 Identities=28% Similarity=0.392 Sum_probs=75.4
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 025313 164 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 243 (255)
Q Consensus 164 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a 243 (255)
.+.++|||+|||+.+++++|+++|++||.|..+.+..+..+|.++|||||+|.+.++|++|+..|||..+.|++|+|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 45789999999999999999999999999843322222227899999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 025313 244 KTTPKYSR 251 (255)
Q Consensus 244 ~~~~~~~~ 251 (255)
.+......
T Consensus 103 ~~~~~~~~ 110 (115)
T 2cpx_A 103 KNKKQRSS 110 (115)
T ss_dssp CCCSCCCC
T ss_pred cCCCCCCC
Confidence 98764433
No 122
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=7.7e-20 Score=132.98 Aligned_cols=80 Identities=20% Similarity=0.311 Sum_probs=73.2
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC--ceeCCEEEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNG--KIINGWMIVV 240 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g--~~l~g~~l~V 240 (255)
..+.++|||+|||+.+++++|+++|++||.|.+|+|+++ ||||||+|++.++|.+|++.|++ ..|.|++|+|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 345789999999999999999999999999999999875 78999999999999999998874 6899999999
Q ss_pred EEecCCCC
Q 025313 241 DVAKTTPK 248 (255)
Q Consensus 241 ~~a~~~~~ 248 (255)
.+|+++..
T Consensus 102 ~~a~~k~~ 109 (119)
T 2ad9_A 102 QFSNHKEL 109 (119)
T ss_dssp EECSSSSC
T ss_pred EEccCCCC
Confidence 99987653
No 123
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.82 E-value=5.3e-20 Score=135.91 Aligned_cols=82 Identities=20% Similarity=0.362 Sum_probs=74.4
Q ss_pred CCccceEEEcCCCCCCCHHHHH----HHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLR----AAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMI 238 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~----~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l 238 (255)
..+.++|||+|||+.+++++|+ ++|++||.|.+|.+.. +|+++|||||+|.+.++|.+|+..|||..|.|++|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3457899999999999999876 6999999999987753 68899999999999999999999999999999999
Q ss_pred EEEEecCCC
Q 025313 239 VVDVAKTTP 247 (255)
Q Consensus 239 ~V~~a~~~~ 247 (255)
+|.||+++.
T Consensus 103 ~V~~a~~~~ 111 (127)
T 2a3j_A 103 VITFSETPQ 111 (127)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 999998764
No 124
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.3e-19 Score=130.50 Aligned_cols=84 Identities=26% Similarity=0.591 Sum_probs=76.7
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 242 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~ 242 (255)
....++|||+|||..+++++|+++|++||.|..|+|..+ +|||||+|.+.++|++|+..|||..++|++|+|.|
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 345789999999999999999999999999999999876 78999999999999999999999999999999999
Q ss_pred ecCCCCCCCC
Q 025313 243 AKTTPKYSRG 252 (255)
Q Consensus 243 a~~~~~~~~~ 252 (255)
+++.+...+.
T Consensus 96 a~~~~~~~~~ 105 (109)
T 1x4g_A 96 GKESPDMTSG 105 (109)
T ss_dssp CCCCCSSCCC
T ss_pred cCCCCCCCCC
Confidence 9987654443
No 125
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=2.5e-19 Score=125.04 Aligned_cols=82 Identities=26% Similarity=0.448 Sum_probs=74.5
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 242 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~ 242 (255)
..+.++|||+|||+.+++++|+++|++||.|..+.+.+ +||||+|.+.++|++|+..|||..+.|++|+|.+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 44588999999999999999999999999999999974 3999999999999999999999999999999999
Q ss_pred ecCCCCCCCC
Q 025313 243 AKTTPKYSRG 252 (255)
Q Consensus 243 a~~~~~~~~~ 252 (255)
++++.+...+
T Consensus 79 a~~~~~~~~~ 88 (92)
T 2dgt_A 79 STSRLRTASG 88 (92)
T ss_dssp SSCCCSCCCC
T ss_pred ccCCCCCCCC
Confidence 9987654443
No 126
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4e-19 Score=125.71 Aligned_cols=84 Identities=37% Similarity=0.567 Sum_probs=74.9
Q ss_pred CCCCccceEEEcCCCCCCCHHHHHHHHhcC--CCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEE
Q 025313 161 PTQIKTKKLFVTGLSFYTSEKTLRAAFEGF--GELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMI 238 (255)
Q Consensus 161 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~f--G~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l 238 (255)
....+.++|||+|||+.+++++|+++|++| |.|..+.+. +|||||+|.+.++|++|+..|||..+.|++|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 334567899999999999999999999999 999999874 5699999999999999999999999999999
Q ss_pred EEEEecCCCCCCCC
Q 025313 239 VVDVAKTTPKYSRG 252 (255)
Q Consensus 239 ~V~~a~~~~~~~~~ 252 (255)
+|.++++..+..++
T Consensus 82 ~v~~a~~~~~~~~~ 95 (99)
T 2cpd_A 82 EVTLAKPVDKDSSG 95 (99)
T ss_dssp EEECCCCCCCCCCC
T ss_pred EEEECCCCCCCCCC
Confidence 99999987654443
No 127
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.81 E-value=7.4e-20 Score=133.75 Aligned_cols=82 Identities=21% Similarity=0.222 Sum_probs=76.5
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCC---EEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGE---LVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIV 239 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~---i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~ 239 (255)
....++|||+|||+.+++++|+++|++||. |..|+|+.++. |+++|||||+|.+.++|++|++ |||..|+|+.|+
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 345789999999999999999999999999 89999999985 9999999999999999999997 999999999999
Q ss_pred EEEecCC
Q 025313 240 VDVAKTT 246 (255)
Q Consensus 240 V~~a~~~ 246 (255)
|.++...
T Consensus 92 V~~a~~~ 98 (118)
T 2db1_A 92 VFKSHRT 98 (118)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9998644
No 128
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.2e-19 Score=129.48 Aligned_cols=79 Identities=20% Similarity=0.228 Sum_probs=71.6
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc--eeCCEEEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGK--IINGWMIVV 240 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~--~l~g~~l~V 240 (255)
..+.++|||+|||+.+++++|+++|++||.|..+.|+++ ||||||+|++.++|.+|++.|++. .+.|++|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345789999999999999999999999999999998854 789999999999999999988764 599999999
Q ss_pred EEecCCC
Q 025313 241 DVAKTTP 247 (255)
Q Consensus 241 ~~a~~~~ 247 (255)
.+++.+.
T Consensus 86 ~~a~~~~ 92 (104)
T 1wex_A 86 NYSTSKR 92 (104)
T ss_dssp EECSSSS
T ss_pred EEccCcc
Confidence 9998764
No 129
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=9.2e-20 Score=131.07 Aligned_cols=81 Identities=20% Similarity=0.333 Sum_probs=75.0
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 242 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~ 242 (255)
.....+|||+|||+.+++++|+++|++| .|..|.|+.|+ +|+++|||||+|.+.++|++|+ .+||..|+||.|.|..
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 89 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSP 89 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEE
Confidence 3446899999999999999999999999 89999999998 5999999999999999999999 7999999999999988
Q ss_pred ecCC
Q 025313 243 AKTT 246 (255)
Q Consensus 243 a~~~ 246 (255)
+...
T Consensus 90 a~~~ 93 (109)
T 2dnn_A 90 ATER 93 (109)
T ss_dssp CCHH
T ss_pred CCcc
Confidence 8643
No 130
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.81 E-value=2.4e-19 Score=129.38 Aligned_cols=78 Identities=23% Similarity=0.478 Sum_probs=72.0
Q ss_pred CccceEEEcCCCCC-CCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 025313 164 IKTKKLFVTGLSFY-TSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 242 (255)
Q Consensus 164 ~~~~~l~V~nLp~~-~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~ 242 (255)
...++|||+|||+. +++++|+++|++||.|..|.+ ++|||||+|.+.++|++|++.|||..++|++|+|.+
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34689999999999 999999999999999999998 478999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 025313 243 AKTTPKY 249 (255)
Q Consensus 243 a~~~~~~ 249 (255)
++++...
T Consensus 97 a~~~~~~ 103 (110)
T 1wf1_A 97 AGEPKPD 103 (110)
T ss_dssp SCCCCSC
T ss_pred CCCCCCC
Confidence 9865443
No 131
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2e-19 Score=123.57 Aligned_cols=78 Identities=29% Similarity=0.458 Sum_probs=72.0
Q ss_pred CCCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh-CCceeCCEEEE
Q 025313 161 PTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEM-NGKIINGWMIV 239 (255)
Q Consensus 161 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l-~g~~l~g~~l~ 239 (255)
....+.++|||+|||+.+++++|+++|++||.|..+.+.++ +|||||+|.+.++|++|+..| +|..++|++|+
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~ 80 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLN 80 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECC
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEE
Confidence 34456789999999999999999999999999999999864 789999999999999999989 99999999999
Q ss_pred EEEec
Q 025313 240 VDVAK 244 (255)
Q Consensus 240 V~~a~ 244 (255)
|.||+
T Consensus 81 v~~ak 85 (85)
T 2ytc_A 81 VKWGR 85 (85)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99985
No 132
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=1.2e-21 Score=142.86 Aligned_cols=89 Identities=24% Similarity=0.396 Sum_probs=82.4
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCCEEE--------EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC
Q 025313 164 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVE--------VKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIING 235 (255)
Q Consensus 164 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~--------v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g 235 (255)
.+.++|||+|||+.+++++|+++|++||.|.. ++|+.++.+|.++|||||+|.+.++|++|+..|||..+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45789999999999999999999999999999 9999998899999999999999999999999999999999
Q ss_pred EEEEEEEecCCCCCCCC
Q 025313 236 WMIVVDVAKTTPKYSRG 252 (255)
Q Consensus 236 ~~l~V~~a~~~~~~~~~ 252 (255)
++|+|.++++++...++
T Consensus 85 ~~l~V~~a~~~~~~~~g 101 (116)
T 2lcw_A 85 NPIKVSFATRRADFNRG 101 (116)
Confidence 99999999987654443
No 133
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.81 E-value=7.6e-21 Score=135.13 Aligned_cols=84 Identities=17% Similarity=0.251 Sum_probs=76.9
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 025313 164 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 243 (255)
Q Consensus 164 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a 243 (255)
.+.++|||+|||+.+++++|+++|++||.|.. .++.+..+|.++|||||+|.+.++|++|++ |||..+.|++|+|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 45789999999999999999999999999888 677777789999999999999999999998 9999999999999999
Q ss_pred cCCCCC
Q 025313 244 KTTPKY 249 (255)
Q Consensus 244 ~~~~~~ 249 (255)
.++...
T Consensus 93 ~~~~~~ 98 (101)
T 1fj7_A 93 KGRDGT 98 (101)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 876543
No 134
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.81 E-value=2.6e-19 Score=126.27 Aligned_cols=79 Identities=16% Similarity=0.415 Sum_probs=71.8
Q ss_pred CCCCccceEEEcCCCC-CCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEE
Q 025313 161 PTQIKTKKLFVTGLSF-YTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIV 239 (255)
Q Consensus 161 ~~~~~~~~l~V~nLp~-~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~ 239 (255)
....+.++|||+|||+ .+++++|+++|++||.|..+++. +|||||+|.+.++|.+|+..|||..++|++|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3445689999999998 99999999999999999999983 78999999999999999999999999999999
Q ss_pred EEEecCCC
Q 025313 240 VDVAKTTP 247 (255)
Q Consensus 240 V~~a~~~~ 247 (255)
|.+++++.
T Consensus 89 V~~a~~~~ 96 (97)
T 2xnq_A 89 LEVSSSNA 96 (97)
T ss_dssp EEECCCCC
T ss_pred EEecCCCC
Confidence 99998654
No 135
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.81 E-value=4.7e-20 Score=137.72 Aligned_cols=82 Identities=21% Similarity=0.206 Sum_probs=76.7
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCC---EEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGE---LVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIV 239 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~---i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~ 239 (255)
....++|||+|||+.+|+++|+++|++||. |..|+|++|+. |+++|||||+|.+.++|++|++ |||..|+|+.|+
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 345789999999999999999999999999 89999999986 9999999999999999999998 999999999999
Q ss_pred EEEecCC
Q 025313 240 VDVAKTT 246 (255)
Q Consensus 240 V~~a~~~ 246 (255)
|.++.+.
T Consensus 119 V~~a~~~ 125 (136)
T 2hgl_A 119 VFKSHRT 125 (136)
T ss_dssp EEECCHH
T ss_pred EEECChH
Confidence 9998654
No 136
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.3e-19 Score=126.46 Aligned_cols=80 Identities=31% Similarity=0.476 Sum_probs=73.7
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC--CEEEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIIN--GWMIVV 240 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~--g~~l~V 240 (255)
..+.++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|++|++.|||..+. |++|+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 345789999999999999999999999999999998754 789999999999999999999999999 999999
Q ss_pred EEecCCCC
Q 025313 241 DVAKTTPK 248 (255)
Q Consensus 241 ~~a~~~~~ 248 (255)
.++++++.
T Consensus 88 ~~a~~~~~ 95 (97)
T 1why_A 88 DFAKSGPS 95 (97)
T ss_dssp EECCCCCC
T ss_pred EECCCCCC
Confidence 99988654
No 137
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.81 E-value=4.9e-20 Score=130.92 Aligned_cols=78 Identities=28% Similarity=0.497 Sum_probs=73.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCC
Q 025313 167 KKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTT 246 (255)
Q Consensus 167 ~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~~ 246 (255)
++|||+|||+.+++++|+++|++||.|..+.+..+ ++|||||+|.+.++|++|++.|||..+.|++|+|.++++.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999877 7899999999999999999999999999999999999876
Q ss_pred CCC
Q 025313 247 PKY 249 (255)
Q Consensus 247 ~~~ 249 (255)
++.
T Consensus 76 ~~~ 78 (101)
T 2hvz_A 76 PRR 78 (101)
T ss_dssp CCS
T ss_pred CCc
Confidence 543
No 138
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=3e-19 Score=124.12 Aligned_cols=81 Identities=33% Similarity=0.495 Sum_probs=73.8
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 242 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~ 242 (255)
..+.++|||+|||+.+++++|+++|++||.|..+.+.++ ||||+|.+.++|++|+..|||..++|++|+|.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 445789999999999999999999999999999999743 999999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 025313 243 AKTTPKYSR 251 (255)
Q Consensus 243 a~~~~~~~~ 251 (255)
+.+......
T Consensus 78 a~~~~~~~~ 86 (90)
T 2dnp_A 78 STKGQKKSG 86 (90)
T ss_dssp SCCCCCCCS
T ss_pred CCCCCCCCC
Confidence 988765443
No 139
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.81 E-value=1.4e-19 Score=130.16 Aligned_cols=80 Identities=31% Similarity=0.531 Sum_probs=72.9
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 025313 162 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 241 (255)
Q Consensus 162 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~ 241 (255)
...+.++|||+|||+.+++++|+++|++||.|..+.+. +|||||+|.+.++|++|+..|||..++|++|+|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34568899999999999999999999999999999987 6799999999999999999999999999999999
Q ss_pred EecCCCCC
Q 025313 242 VAKTTPKY 249 (255)
Q Consensus 242 ~a~~~~~~ 249 (255)
++++++++
T Consensus 99 ~a~~~~~r 106 (108)
T 2jvo_A 99 YSKLPAKR 106 (108)
T ss_dssp SCSCCC--
T ss_pred EecCCCCC
Confidence 99877654
No 140
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.81 E-value=7.9e-21 Score=142.41 Aligned_cols=83 Identities=23% Similarity=0.261 Sum_probs=75.8
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 242 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~ 242 (255)
....++|||+|||+.+++++|+++|++|| |..|.|+.|+. |+++|||||+|.+.++|++|+ .+|+..|+|+.|+|.+
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 34578999999999999999999999999 77999999984 999999999999999999999 8999999999999999
Q ss_pred ecCCCC
Q 025313 243 AKTTPK 248 (255)
Q Consensus 243 a~~~~~ 248 (255)
+.+...
T Consensus 120 a~~~~~ 125 (139)
T 2hgn_A 120 NSTTGA 125 (139)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 987653
No 141
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.81 E-value=9.2e-21 Score=167.83 Aligned_cols=84 Identities=36% Similarity=0.613 Sum_probs=80.0
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 025313 164 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 243 (255)
Q Consensus 164 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a 243 (255)
.+.++|||+|||+.+++++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCC
Q 025313 244 KTTP 247 (255)
Q Consensus 244 ~~~~ 247 (255)
.+..
T Consensus 180 ~~~~ 183 (437)
T 3pgw_S 180 RGRT 183 (437)
T ss_pred CCCC
Confidence 8653
No 142
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.8e-20 Score=135.96 Aligned_cols=83 Identities=18% Similarity=0.240 Sum_probs=76.5
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 242 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~ 242 (255)
.....+|||+|||+.+++++|+++|++||.|..+.++.+..+|+++|||||+|.+.++|++||. |||..|+|++|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3457899999999999999999999999999987777777799999999999999999999998 999999999999999
Q ss_pred ecCC
Q 025313 243 AKTT 246 (255)
Q Consensus 243 a~~~ 246 (255)
+..+
T Consensus 101 a~~~ 104 (124)
T 1wel_A 101 ITKK 104 (124)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8754
No 143
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=127.64 Aligned_cols=81 Identities=17% Similarity=0.274 Sum_probs=73.3
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 242 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~ 242 (255)
....++|||+|||+.+++++|+++|++||.|. +.++.+ .++|||||+|.+.++|++|++.|||..++|++|+|.+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34578999999999999999999999999997 677644 6889999999999999999999999999999999999
Q ss_pred ecCCCC
Q 025313 243 AKTTPK 248 (255)
Q Consensus 243 a~~~~~ 248 (255)
++++++
T Consensus 91 a~~~~~ 96 (97)
T 2e5j_A 91 ARQQRD 96 (97)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 987653
No 144
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.81 E-value=5.4e-20 Score=129.64 Aligned_cols=83 Identities=22% Similarity=0.386 Sum_probs=76.1
Q ss_pred CCccceEEEcCCCCCCCHHHHH----HHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLR----AAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMI 238 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~----~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l 238 (255)
..+.++|||+|||+.+++++|+ ++|++||.|..+.+.. +|.++|||||+|.+.++|.+|+..|||..++|++|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 3457899999999999999999 9999999999998873 67889999999999999999999999999999999
Q ss_pred EEEEecCCCC
Q 025313 239 VVDVAKTTPK 248 (255)
Q Consensus 239 ~V~~a~~~~~ 248 (255)
+|.+++++..
T Consensus 82 ~v~~a~~~~~ 91 (97)
T 1nu4_A 82 RIQYAKTDSD 91 (97)
T ss_dssp EEEECSSCCT
T ss_pred EEEEccCCCc
Confidence 9999987653
No 145
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.81 E-value=2.5e-19 Score=144.28 Aligned_cols=84 Identities=26% Similarity=0.432 Sum_probs=78.8
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 025313 164 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 243 (255)
Q Consensus 164 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a 243 (255)
.+.++|||+|||+.+++++|+++|++||.|.+|+|++|+.+|+++|||||+|.+.++|++|++.+|+..+.|+.|++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCC
Q 025313 244 KTTP 247 (255)
Q Consensus 244 ~~~~ 247 (255)
....
T Consensus 93 ~~~~ 96 (213)
T 4f02_A 93 QRDP 96 (213)
T ss_dssp CCCT
T ss_pred cccc
Confidence 7543
No 146
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.9e-19 Score=127.35 Aligned_cols=83 Identities=29% Similarity=0.387 Sum_probs=75.6
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 242 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~ 242 (255)
..+.++|||+|||+.+++++|+++|++||.|..+.+.++ +|||||+|.+.++|++|++.|||..+.|++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 345789999999999999999999999999999999854 78999999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 025313 243 AKTTPKYSR 251 (255)
Q Consensus 243 a~~~~~~~~ 251 (255)
++++.....
T Consensus 86 a~~~~~~~~ 94 (99)
T 2cpj_A 86 ACHSASLTS 94 (99)
T ss_dssp SSCCSCCCC
T ss_pred cCCCCCCCC
Confidence 998765433
No 147
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.80 E-value=1.2e-19 Score=127.64 Aligned_cols=82 Identities=28% Similarity=0.380 Sum_probs=74.2
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 242 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~ 242 (255)
..+.++|||+|||+.+++++|+++|++||.|..+ ..+|.++|||||+|.+.++|++|+..|||..++|++|+|.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3468899999999999999999999999988766 23789999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 025313 243 AKTTPKY 249 (255)
Q Consensus 243 a~~~~~~ 249 (255)
+.++.+.
T Consensus 88 a~~~~~~ 94 (96)
T 1fjc_A 88 TGEKGGT 94 (96)
T ss_dssp CSSSCCC
T ss_pred cCCCCCC
Confidence 9876543
No 148
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.80 E-value=3.1e-20 Score=126.61 Aligned_cols=73 Identities=21% Similarity=0.338 Sum_probs=67.9
Q ss_pred cceEEEcCCCCCC------CHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCE-EE
Q 025313 166 TKKLFVTGLSFYT------SEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGW-MI 238 (255)
Q Consensus 166 ~~~l~V~nLp~~~------t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~-~l 238 (255)
+++|||+|||+.+ ++++|+++|++||.|.++.+++ .+|+++|||||+|.+.++|++|++.|||..++|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 7799999999999999999883 4899999999999999999999999999999999 88
Q ss_pred EE
Q 025313 239 VV 240 (255)
Q Consensus 239 ~V 240 (255)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 149
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.80 E-value=1.1e-19 Score=129.32 Aligned_cols=82 Identities=26% Similarity=0.459 Sum_probs=77.2
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 242 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~ 242 (255)
....++|||+|||+.+++++|+++|++||.|..+.|+.++ +|.++|||||+|.+.++|++|+. +|..++|++|.|.+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGP 82 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEE
Confidence 3457899999999999999999999999999999999998 99999999999999999999996 99999999999999
Q ss_pred ecCCC
Q 025313 243 AKTTP 247 (255)
Q Consensus 243 a~~~~ 247 (255)
+.+..
T Consensus 83 a~~~~ 87 (102)
T 2xs2_A 83 AIRKQ 87 (102)
T ss_dssp EEECC
T ss_pred CCcCc
Confidence 98664
No 150
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.80 E-value=2e-20 Score=125.49 Aligned_cols=75 Identities=31% Similarity=0.521 Sum_probs=71.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 025313 168 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 243 (255)
Q Consensus 168 ~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a 243 (255)
+|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++ +++..++|++|+|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 59999999999999999999999999999999999899999999999999999999996 5999999999999875
No 151
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.6e-19 Score=126.32 Aligned_cols=82 Identities=26% Similarity=0.398 Sum_probs=72.4
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCC-EEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC-ceeCCEEEEEE
Q 025313 164 IKTKKLFVTGLSFYTSEKTLRAAFEGFGE-LVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNG-KIINGWMIVVD 241 (255)
Q Consensus 164 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~-i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g-~~l~g~~l~V~ 241 (255)
.+.++|||+|||+.+++++|+++|++||. |..+.+. ++|||||+|.+.++|++|++.||| ..++|++|+|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 34789999999999999999999999999 6666553 478999999999999999999999 99999999999
Q ss_pred EecCCCCCCCC
Q 025313 242 VAKTTPKYSRG 252 (255)
Q Consensus 242 ~a~~~~~~~~~ 252 (255)
+++++....++
T Consensus 79 ~a~~~~~~~~~ 89 (93)
T 2cqh_A 79 YSVSKKLRSSG 89 (93)
T ss_dssp ECCCCCCCCCS
T ss_pred EccCccccCCC
Confidence 99987655443
No 152
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.80 E-value=7.2e-19 Score=125.32 Aligned_cols=76 Identities=41% Similarity=0.577 Sum_probs=71.1
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 025313 164 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 243 (255)
Q Consensus 164 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a 243 (255)
.+.++|||+|||+.+++++|+++|++||.|..+.++ +|||||+|.+.++|++|++.|||..|.|++|+|.++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 457899999999999999999999999999999987 459999999999999999999999999999999999
Q ss_pred cCCC
Q 025313 244 KTTP 247 (255)
Q Consensus 244 ~~~~ 247 (255)
+++.
T Consensus 81 ~~~~ 84 (103)
T 2dgu_A 81 KPPD 84 (103)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 8764
No 153
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.80 E-value=1.1e-19 Score=147.80 Aligned_cols=81 Identities=21% Similarity=0.450 Sum_probs=76.8
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCC--CEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 025313 165 KTKKLFVTGLSFYTSEKTLRAAFEGFG--ELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 242 (255)
Q Consensus 165 ~~~~l~V~nLp~~~t~~~L~~~F~~fG--~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~ 242 (255)
..++|||+|||+.+++++|+++|++|| .|++|+|++|+.+|+++|||||+|.+.++|++||+.|||+.|.|++|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 467899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ecC
Q 025313 243 AKT 245 (255)
Q Consensus 243 a~~ 245 (255)
+.+
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 154
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=2.1e-19 Score=129.28 Aligned_cols=79 Identities=22% Similarity=0.262 Sum_probs=71.4
Q ss_pred CCccceEEEcCCCCC-CCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC--CceeCCEEEE
Q 025313 163 QIKTKKLFVTGLSFY-TSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMN--GKIINGWMIV 239 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~-~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~--g~~l~g~~l~ 239 (255)
..+.++|||+|||+. +++++|+++|++||.|.+|.|++ +||||||+|++.++|++|++.|+ +..|.|++|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 456889999999998 99999999999999999999974 47899999999999999999886 4569999999
Q ss_pred EEEecCCC
Q 025313 240 VDVAKTTP 247 (255)
Q Consensus 240 V~~a~~~~ 247 (255)
|.+|....
T Consensus 96 V~~a~~~~ 103 (112)
T 1x4f_A 96 VDLSEKYK 103 (112)
T ss_dssp EEEECSCS
T ss_pred EEECcccc
Confidence 99998654
No 155
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.79 E-value=2.5e-19 Score=127.21 Aligned_cols=77 Identities=21% Similarity=0.396 Sum_probs=71.8
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 025313 164 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 243 (255)
Q Consensus 164 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a 243 (255)
...++|||+|||..+++++|+++|++||.|.++++. +++|||||+|.+.++|.+|+..|||..++|++|+|.|+
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 346899999999999999999999999999999987 35789999999999999999999999999999999998
Q ss_pred cCC
Q 025313 244 KTT 246 (255)
Q Consensus 244 ~~~ 246 (255)
+++
T Consensus 99 ~~~ 101 (101)
T 2la4_A 99 KER 101 (101)
T ss_dssp CCC
T ss_pred cCC
Confidence 763
No 156
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.8e-19 Score=126.78 Aligned_cols=79 Identities=16% Similarity=0.400 Sum_probs=71.5
Q ss_pred CCccceEEEcCCCC-CCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 025313 163 QIKTKKLFVTGLSF-YTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 241 (255)
Q Consensus 163 ~~~~~~l~V~nLp~-~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~ 241 (255)
..+.++|||+|||+ .+++++|+++|++||.|..+.+. +|||||+|.+.++|++|+..|||..+.|++|+|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34588999999998 99999999999999999999984 6799999999999999999999999999999999
Q ss_pred EecCCCCC
Q 025313 242 VAKTTPKY 249 (255)
Q Consensus 242 ~a~~~~~~ 249 (255)
++++..+.
T Consensus 79 ~a~~~~~~ 86 (96)
T 2kvi_A 79 VSSSNARP 86 (96)
T ss_dssp EEECCCC-
T ss_pred EcCcCCCC
Confidence 99876543
No 157
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.1e-18 Score=121.55 Aligned_cols=81 Identities=27% Similarity=0.498 Sum_probs=72.9
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 242 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~ 242 (255)
..+.++|||+|| .+++++|+++|++||.|..|.|. .++|||||+|.+.++|++|+..|||..+.|++|+|.+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 345789999996 89999999999999999999984 4688999999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 025313 243 AKTTPKYSR 251 (255)
Q Consensus 243 a~~~~~~~~ 251 (255)
+.+++...+
T Consensus 84 a~~~~~~~~ 92 (97)
T 1x5p_A 84 ARKQPMLDS 92 (97)
T ss_dssp CSSCCCCCS
T ss_pred CCCCCCCCC
Confidence 988765443
No 158
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.79 E-value=2.8e-19 Score=129.61 Aligned_cols=79 Identities=20% Similarity=0.277 Sum_probs=72.3
Q ss_pred ceEEEcCC----CCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCC----HHH----HHHHHH--HhCCce
Q 025313 167 KKLFVTGL----SFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTT----EEA----ASAALK--EMNGKI 232 (255)
Q Consensus 167 ~~l~V~nL----p~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~----~~~----A~~Al~--~l~g~~ 232 (255)
.+|||+|| |+.+++++|+++|++||+|.++.++.|+.||+|+|||||+|.+ +++ |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 433 889988 789999
Q ss_pred eCCEEEEEEEecC
Q 025313 233 INGWMIVVDVAKT 245 (255)
Q Consensus 233 l~g~~l~V~~a~~ 245 (255)
|+|++|+|.+.+.
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998654
No 159
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.79 E-value=5.3e-20 Score=132.20 Aligned_cols=82 Identities=13% Similarity=0.159 Sum_probs=76.6
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCC---EEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGE---LVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIV 239 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~---i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~ 239 (255)
.....+|||+|||+.+++++|+++|++||. |..|.|+.|+. |+++|||||+|.+.++|++|+. +||..++|+.|+
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 345789999999999999999999999998 89999999986 9999999999999999999997 999999999999
Q ss_pred EEEecCC
Q 025313 240 VDVAKTT 246 (255)
Q Consensus 240 V~~a~~~ 246 (255)
|.++.+.
T Consensus 86 V~~a~~~ 92 (107)
T 2lmi_A 86 VYEINNE 92 (107)
T ss_dssp CEECCHH
T ss_pred EEECCHH
Confidence 9998754
No 160
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.79 E-value=1.3e-18 Score=134.09 Aligned_cols=82 Identities=28% Similarity=0.479 Sum_probs=79.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecC
Q 025313 166 TKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKT 245 (255)
Q Consensus 166 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~ 245 (255)
.++|||+|||+.+++++|+++|++||.|.++.+++++.+|.++|||||+|.+.++|.+|++.|||..+.|++|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57899999999999999999999999999999999998999999999999999999999999999999999999999986
Q ss_pred CC
Q 025313 246 TP 247 (255)
Q Consensus 246 ~~ 247 (255)
..
T Consensus 82 ~~ 83 (167)
T 1fxl_A 82 SS 83 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 64
No 161
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.78 E-value=1.1e-18 Score=134.83 Aligned_cols=84 Identities=26% Similarity=0.402 Sum_probs=79.9
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 025313 165 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 244 (255)
Q Consensus 165 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~ 244 (255)
+.++|||+|||+.+++++|+++|++||.|.++.+++++.+|.++|||||+|.+.++|++|++.|+|..++|++|+|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 36899999999999999999999999999999999999899999999999999999999999999999999999999998
Q ss_pred CCCC
Q 025313 245 TTPK 248 (255)
Q Consensus 245 ~~~~ 248 (255)
+...
T Consensus 82 ~~~~ 85 (168)
T 1b7f_A 82 PGGE 85 (168)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 7653
No 162
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.78 E-value=6.7e-19 Score=127.98 Aligned_cols=80 Identities=15% Similarity=0.318 Sum_probs=74.5
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 025313 164 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 243 (255)
Q Consensus 164 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a 243 (255)
.++++|||+|||+.+++++|+++|++||.|..+.++.+ +.++|||||+|.+.++|.+|+..|||..++|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 45789999999999999999999999999999999865 456999999999999999999999999999999999999
Q ss_pred cCC
Q 025313 244 KTT 246 (255)
Q Consensus 244 ~~~ 246 (255)
.+.
T Consensus 83 ~~~ 85 (115)
T 3lqv_A 83 NAN 85 (115)
T ss_dssp CHH
T ss_pred cCC
Confidence 864
No 163
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3.4e-19 Score=130.75 Aligned_cols=81 Identities=19% Similarity=0.256 Sum_probs=74.0
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCCE----EEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEE
Q 025313 164 IKTKKLFVTGLSFYTSEKTLRAAFEGFGEL----VEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIV 239 (255)
Q Consensus 164 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i----~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~ 239 (255)
....+|||+|||+.+++++|+++|++||.| ..|.|+.|. +|+++|||||+|.+.++|++|++. |+..|+||.|+
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 346899999999999999999999999975 689999995 899999999999999999999965 99999999999
Q ss_pred EEEecCC
Q 025313 240 VDVAKTT 246 (255)
Q Consensus 240 V~~a~~~ 246 (255)
|..+.++
T Consensus 99 V~~a~~~ 105 (123)
T 2dha_A 99 LFRSTAA 105 (123)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9988643
No 164
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=9.2e-19 Score=126.50 Aligned_cols=77 Identities=16% Similarity=0.148 Sum_probs=71.8
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 025313 164 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 243 (255)
Q Consensus 164 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a 243 (255)
...++|||+|||+.+++++|+++|++||.|..|.|+. ++|||||+|.+.++|++|++.|||..+.|++|.|.|+
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3478999999999999999999999999999998874 5789999999999999999999999999999999999
Q ss_pred cCC
Q 025313 244 KTT 246 (255)
Q Consensus 244 ~~~ 246 (255)
...
T Consensus 82 ~~~ 84 (111)
T 1whx_A 82 PIG 84 (111)
T ss_dssp ETT
T ss_pred CCC
Confidence 865
No 165
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.77 E-value=2.1e-19 Score=135.81 Aligned_cols=84 Identities=32% Similarity=0.406 Sum_probs=72.8
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEE--E---EecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEE
Q 025313 164 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVK--I---IMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMI 238 (255)
Q Consensus 164 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~--i---~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l 238 (255)
.+.++|||+|||+.+++++|+++|++||.|..+. + +....+|+++|||||+|.+.++|.+|+..|||..+.|++|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 4578999999999999999999999999987641 1 1112378999999999999999999999999999999999
Q ss_pred EEEEecCCC
Q 025313 239 VVDVAKTTP 247 (255)
Q Consensus 239 ~V~~a~~~~ 247 (255)
+|.+|++..
T Consensus 123 ~V~~a~~~~ 131 (143)
T 3egn_A 123 VVQFARSAR 131 (143)
T ss_dssp EEEECCCSC
T ss_pred EEEECCCCC
Confidence 999997653
No 166
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.5e-18 Score=120.43 Aligned_cols=77 Identities=23% Similarity=0.333 Sum_probs=70.2
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 025313 165 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 244 (255)
Q Consensus 165 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~ 244 (255)
..++|||+|||+.+++++|+++|++||.|..| +.++.+|+ ||||+|.+.++|++|+. |||..|+|+.|+|.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 46799999999999999999999999999987 66665665 99999999999999998 99999999999999987
Q ss_pred CCC
Q 025313 245 TTP 247 (255)
Q Consensus 245 ~~~ 247 (255)
++.
T Consensus 81 ~~~ 83 (94)
T 2e5g_A 81 QKE 83 (94)
T ss_dssp CSC
T ss_pred cCC
Confidence 654
No 167
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.77 E-value=9.8e-19 Score=136.68 Aligned_cols=83 Identities=25% Similarity=0.392 Sum_probs=79.0
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 242 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~ 242 (255)
..+.++|||+|||+.+++++|+++|++||.|..|.|..+. +|.++|||||+|.+.++|++|++.|||..|.|++|+|.+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3457899999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred ecCC
Q 025313 243 AKTT 246 (255)
Q Consensus 243 a~~~ 246 (255)
|...
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 9764
No 168
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.6e-18 Score=121.79 Aligned_cols=80 Identities=15% Similarity=0.245 Sum_probs=72.9
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEE-EEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 025313 164 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVK-IIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 242 (255)
Q Consensus 164 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~-i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~ 242 (255)
...++|||+|||+.+++++|+++|++||.|..++ ++.++.+| .|||+|.+.++|++|+..|||..++|++|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3478999999999999999999999999999994 88876444 499999999999999999999999999999999
Q ss_pred ecCCC
Q 025313 243 AKTTP 247 (255)
Q Consensus 243 a~~~~ 247 (255)
+.++.
T Consensus 89 a~~~~ 93 (96)
T 2e44_A 89 IPDEM 93 (96)
T ss_dssp CCCCC
T ss_pred cCccc
Confidence 98763
No 169
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.2e-18 Score=124.09 Aligned_cols=78 Identities=24% Similarity=0.327 Sum_probs=70.9
Q ss_pred CccceEEE--cCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee-----CCE
Q 025313 164 IKTKKLFV--TGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKII-----NGW 236 (255)
Q Consensus 164 ~~~~~l~V--~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l-----~g~ 236 (255)
.++++||| +||++.+++++|+++|++||.|.+|.|+. +||||||+|.+.++|++|++.|||..+ .|+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 45788999 77999999999999999999999998863 378999999999999999999999998 789
Q ss_pred EEEEEEecCCC
Q 025313 237 MIVVDVAKTTP 247 (255)
Q Consensus 237 ~l~V~~a~~~~ 247 (255)
+|.|.+++..+
T Consensus 97 ~l~v~~a~~~p 107 (114)
T 2cq2_A 97 TLYLNFVEKVQ 107 (114)
T ss_dssp ECEEEEESCCC
T ss_pred EEEEEecccCc
Confidence 99999998654
No 170
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.76 E-value=8.1e-19 Score=129.09 Aligned_cols=79 Identities=23% Similarity=0.333 Sum_probs=72.7
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCCEE--EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 025313 164 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELV--EVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 241 (255)
Q Consensus 164 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~--~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~ 241 (255)
....+|||+|||+.+++++|+++|++| .|. .|+|+.|+. |+++|||||+|.+.++|++|++ +++..|+||.|+|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEE
Confidence 457889999999999999999999999 677 999999985 9999999999999999999996 58899999999999
Q ss_pred EecC
Q 025313 242 VAKT 245 (255)
Q Consensus 242 ~a~~ 245 (255)
.+.+
T Consensus 117 ~a~~ 120 (126)
T 2hgm_A 117 KSSQ 120 (126)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8864
No 171
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.76 E-value=2e-18 Score=119.42 Aligned_cols=76 Identities=17% Similarity=0.252 Sum_probs=70.9
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 025313 165 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 244 (255)
Q Consensus 165 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~ 244 (255)
..++|||+|||+.+++++|+++|++| .|..+++. +++|||||+|.+.++|++|++.|||..++|++|+|.++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 36789999999999999999999999 99999884 578999999999999999999999999999999999997
Q ss_pred CCC
Q 025313 245 TTP 247 (255)
Q Consensus 245 ~~~ 247 (255)
...
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 654
No 172
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.76 E-value=5.1e-18 Score=134.29 Aligned_cols=85 Identities=32% Similarity=0.581 Sum_probs=78.3
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 025313 162 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 241 (255)
Q Consensus 162 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~ 241 (255)
.....++|||+|||+.+++++|+++|++||.|.+|.+++++.+|.++|||||+|.+.++|.+|+.. +|..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 345689999999999999999999999999999999999998999999999999999999999955 9999999999999
Q ss_pred EecCCC
Q 025313 242 VAKTTP 247 (255)
Q Consensus 242 ~a~~~~ 247 (255)
++.+..
T Consensus 88 ~~~~~~ 93 (196)
T 1l3k_A 88 RAVSRE 93 (196)
T ss_dssp ECCC--
T ss_pred cccCcc
Confidence 987654
No 173
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.76 E-value=3.9e-18 Score=130.15 Aligned_cols=80 Identities=19% Similarity=0.317 Sum_probs=72.6
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC--EEEEEE
Q 025313 164 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIING--WMIVVD 241 (255)
Q Consensus 164 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g--~~l~V~ 241 (255)
....+|||+||++.+++++|+++|++||.|++|.|..+ .++|||||+|.+.++|++|++.|||..|.| ++|+|.
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 34678999999999999999999999999999998754 368999999999999999999999999965 999999
Q ss_pred EecCCC
Q 025313 242 VAKTTP 247 (255)
Q Consensus 242 ~a~~~~ 247 (255)
|++++.
T Consensus 120 ~Ak~~~ 125 (164)
T 1sjr_A 120 FSKLTS 125 (164)
T ss_dssp ECSSSS
T ss_pred EecCCc
Confidence 999764
No 174
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.76 E-value=1.5e-18 Score=126.13 Aligned_cols=76 Identities=18% Similarity=0.302 Sum_probs=67.5
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEE-----E
Q 025313 164 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWM-----I 238 (255)
Q Consensus 164 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~-----l 238 (255)
...++|||+|||+.+++++|+++|++||.|..|.|+.+ |||||+|.+.++|++|++.|||..|+|++ |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 34789999999999999999999999999999999865 79999999999999999999999999988 8
Q ss_pred EEEEecCC
Q 025313 239 VVDVAKTT 246 (255)
Q Consensus 239 ~V~~a~~~ 246 (255)
+|..+.+.
T Consensus 87 ~v~~~~~~ 94 (115)
T 3beg_B 87 RVKVDGPR 94 (115)
T ss_dssp EEEECC--
T ss_pred EeccCCCC
Confidence 88887654
No 175
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.75 E-value=4.9e-18 Score=117.71 Aligned_cols=77 Identities=22% Similarity=0.370 Sum_probs=63.6
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce--eCCEEEE
Q 025313 162 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKI--INGWMIV 239 (255)
Q Consensus 162 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~--l~g~~l~ 239 (255)
...+..+|||+|||+.+++++|+++|++||.|.+|+|+++ +||||||+|++.++|++ ++|.. +.|++|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 3456889999999999999999999999999999999875 79999999999999883 46655 5599999
Q ss_pred EEEecCCC
Q 025313 240 VDVAKTTP 247 (255)
Q Consensus 240 V~~a~~~~ 247 (255)
|.+|.++.
T Consensus 78 v~~a~~k~ 85 (89)
T 3d2w_A 78 ISNAEPKH 85 (89)
T ss_dssp EEECC---
T ss_pred EEEcCCCC
Confidence 99998764
No 176
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.75 E-value=7e-18 Score=129.74 Aligned_cols=81 Identities=30% Similarity=0.513 Sum_probs=75.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecCC
Q 025313 167 KKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTT 246 (255)
Q Consensus 167 ~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~~ 246 (255)
++|||+|||+.+++++|+++|++||.|.++++++++ +|.++|||||+|.+.++|.+|++.|||..+.|++|.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 589999999999999999999999999999999998 6889999999999999999999999999999999999999766
Q ss_pred CC
Q 025313 247 PK 248 (255)
Q Consensus 247 ~~ 248 (255)
..
T Consensus 80 ~~ 81 (166)
T 3md3_A 80 QQ 81 (166)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 177
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.75 E-value=1.2e-17 Score=122.97 Aligned_cols=79 Identities=19% Similarity=0.363 Sum_probs=71.9
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceE-EEEEeCCHHHHHHHHHHhCCceeCC--EEEEE
Q 025313 164 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGY-AFIEYTTEEAASAALKEMNGKIING--WMIVV 240 (255)
Q Consensus 164 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~-aFV~F~~~~~A~~Al~~l~g~~l~g--~~l~V 240 (255)
.....|||+||++.+|+++|+++|++||.|.+|.+..+ ++|+ |||+|.+.++|++|++.|||..|.| ++|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 44667899999999999999999999999999998864 3677 9999999999999999999999988 99999
Q ss_pred EEecCCC
Q 025313 241 DVAKTTP 247 (255)
Q Consensus 241 ~~a~~~~ 247 (255)
+|+++..
T Consensus 101 ~~ak~~~ 107 (130)
T 3zzy_A 101 DFSKLTS 107 (130)
T ss_dssp EECSCSS
T ss_pred EecCCCc
Confidence 9998764
No 178
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=4.2e-18 Score=116.85 Aligned_cols=72 Identities=21% Similarity=0.338 Sum_probs=65.5
Q ss_pred cce-EEEcCCCCCCCHHH----HHHHHhcC-CCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEE
Q 025313 166 TKK-LFVTGLSFYTSEKT----LRAAFEGF-GELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIV 239 (255)
Q Consensus 166 ~~~-l~V~nLp~~~t~~~----L~~~F~~f-G~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~ 239 (255)
..+ |||+|||+.+++++ |+++|++| |+|.+| +| |+|||+|.+.++|.+|++.|||..+.||+|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 455 99999999999988 55899999 599999 44 8999999999999999999999999999999
Q ss_pred EEEecCCC
Q 025313 240 VDVAKTTP 247 (255)
Q Consensus 240 V~~a~~~~ 247 (255)
|++|+...
T Consensus 78 v~~A~~~s 85 (96)
T 2diu_A 78 VSFTPKNR 85 (96)
T ss_dssp EESSCCSC
T ss_pred EEecCCCc
Confidence 99998765
No 179
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.74 E-value=2e-17 Score=118.04 Aligned_cols=83 Identities=17% Similarity=0.204 Sum_probs=74.0
Q ss_pred CccceEEEcCCCC-----CCCHHHHHHHHhcCCCEEEEEEEecCCC-CCcceEEEEEeCCHHHHHHHHHHhCCceeCCEE
Q 025313 164 IKTKKLFVTGLSF-----YTSEKTLRAAFEGFGELVEVKIIMDKIS-KRSKGYAFIEYTTEEAASAALKEMNGKIINGWM 237 (255)
Q Consensus 164 ~~~~~l~V~nLp~-----~~t~~~L~~~F~~fG~i~~v~i~~d~~~-g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~ 237 (255)
.++++|+|+|+.. .-++++|++.|++||.|.++.|++++.+ ++++|+|||+|.+.++|.+|++.|||..++||+
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4578999999963 2368999999999999999999998754 689999999999999999999999999999999
Q ss_pred EEEEEecCC
Q 025313 238 IVVDVAKTT 246 (255)
Q Consensus 238 l~V~~a~~~ 246 (255)
|+|.++...
T Consensus 86 i~v~~a~~~ 94 (105)
T 2pe8_A 86 VKACFYNLD 94 (105)
T ss_dssp CEEEECCHH
T ss_pred EEEEEcCHH
Confidence 999999753
No 180
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.74 E-value=4.7e-17 Score=119.15 Aligned_cols=77 Identities=19% Similarity=0.263 Sum_probs=69.0
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceE-EEEEeCCHHHHHHHHHHhCCceeCC--EEEEEE
Q 025313 165 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGY-AFIEYTTEEAASAALKEMNGKIING--WMIVVD 241 (255)
Q Consensus 165 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~-aFV~F~~~~~A~~Al~~l~g~~l~g--~~l~V~ 241 (255)
....|||+||++.+++++|+++|++||.|.+|.|... .|| |||+|.+.++|..|++.|||..|.| ++|+|.
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~ 97 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE 97 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEE
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEE
Confidence 3456789999999999999999999999999998652 276 9999999999999999999999987 699999
Q ss_pred EecCCC
Q 025313 242 VAKTTP 247 (255)
Q Consensus 242 ~a~~~~ 247 (255)
+|+++.
T Consensus 98 ~Ak~~~ 103 (124)
T 2e5i_A 98 YARPTR 103 (124)
T ss_dssp CCSCSC
T ss_pred EecCCc
Confidence 998764
No 181
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3e-18 Score=118.53 Aligned_cols=81 Identities=21% Similarity=0.365 Sum_probs=68.8
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 025313 165 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 244 (255)
Q Consensus 165 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~ 244 (255)
+.++|||+|||+.+++++|+++|++||.|..++|+.+ ++|||||+|.+.++|++|+. .+..+.|++|+|.++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecC
Confidence 4789999999999999999999999999999999865 68999999999999976432 1345689999999999
Q ss_pred CCCCCCCC
Q 025313 245 TTPKYSRG 252 (255)
Q Consensus 245 ~~~~~~~~ 252 (255)
++....++
T Consensus 77 ~~~~~~~~ 84 (88)
T 1wf0_A 77 PKHNSNSG 84 (88)
T ss_dssp CCCCCCSC
T ss_pred CCCCCCCC
Confidence 87655444
No 182
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.73 E-value=1.1e-17 Score=122.66 Aligned_cols=81 Identities=27% Similarity=0.497 Sum_probs=71.6
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 242 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~ 242 (255)
..+.++|||+|+ .+++++|+++|++||.|.+|.+. .++|||||+|.+.++|++|+..|||..+.|++|+|.+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345789999996 69999999999999999999985 4689999999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 025313 243 AKTTPKYSR 251 (255)
Q Consensus 243 a~~~~~~~~ 251 (255)
+.+++...+
T Consensus 108 a~~~~~~~~ 116 (121)
T 2bz2_A 108 ARKQPMLDA 116 (121)
T ss_dssp CCSSCC---
T ss_pred eCCCCCCCC
Confidence 998765443
No 183
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.73 E-value=2.1e-17 Score=132.24 Aligned_cols=77 Identities=23% Similarity=0.305 Sum_probs=72.0
Q ss_pred ccceEEEcCCC-CCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 025313 165 KTKKLFVTGLS-FYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 243 (255)
Q Consensus 165 ~~~~l~V~nLp-~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a 243 (255)
++++|||+||| +.+++++|+++|++||.|.+|+++++ ++|||||+|.+.++|++|++.|||..+.|++|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 47899999999 89999999999999999999999876 3789999999999999999999999999999999999
Q ss_pred cCC
Q 025313 244 KTT 246 (255)
Q Consensus 244 ~~~ 246 (255)
+..
T Consensus 78 ~~~ 80 (205)
T 3tyt_A 78 KQP 80 (205)
T ss_dssp SCS
T ss_pred cCC
Confidence 753
No 184
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.72 E-value=2.2e-17 Score=113.69 Aligned_cols=72 Identities=24% Similarity=0.496 Sum_probs=67.1
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcC----C-------CEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 025313 164 IKTKKLFVTGLSFYTSEKTLRAAFEGF----G-------ELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKI 232 (255)
Q Consensus 164 ~~~~~l~V~nLp~~~t~~~L~~~F~~f----G-------~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~ 232 (255)
.+.++|||+|||+.+++++|+++|++| | .|.++.+.++ +|||||+|.+.++|++|+ .|||..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 457899999999999999999999999 8 8999998754 789999999999999999 999999
Q ss_pred eCCEEEEEEE
Q 025313 233 INGWMIVVDV 242 (255)
Q Consensus 233 l~g~~l~V~~ 242 (255)
++|++|+|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999973
No 185
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.9e-17 Score=120.16 Aligned_cols=76 Identities=29% Similarity=0.390 Sum_probs=65.3
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCC---CCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEE
Q 025313 164 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKIS---KRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVV 240 (255)
Q Consensus 164 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~---g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V 240 (255)
...++|||+|||+.+++++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|++|++.|+ .++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 3478899999999999999999999999999 888888777 7999999999999999999999983 245555444
Q ss_pred EE
Q 025313 241 DV 242 (255)
Q Consensus 241 ~~ 242 (255)
..
T Consensus 83 ~~ 84 (114)
T 2dnl_A 83 VS 84 (114)
T ss_dssp EC
T ss_pred cc
Confidence 43
No 186
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.72 E-value=1.5e-17 Score=133.57 Aligned_cols=83 Identities=30% Similarity=0.545 Sum_probs=75.8
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEe
Q 025313 164 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 243 (255)
Q Consensus 164 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a 243 (255)
...++|||+|||+.+++++|+++|++||.|.++++++++.+|.++|||||+|.+.++|.+|++.|||..++|+.|+|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 34689999999999999999999999999999999999989999999999999999999999999999999999999987
Q ss_pred cCC
Q 025313 244 KTT 246 (255)
Q Consensus 244 ~~~ 246 (255)
...
T Consensus 106 ~~~ 108 (216)
T 2qfj_A 106 SNI 108 (216)
T ss_dssp SCC
T ss_pred CCc
Confidence 654
No 187
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.71 E-value=4.3e-17 Score=129.11 Aligned_cols=79 Identities=14% Similarity=0.275 Sum_probs=73.3
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 025313 165 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 244 (255)
Q Consensus 165 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~ 244 (255)
..++|||+|||+.+++++|+++|++||.|..|+|+++. +|.++|||||+|++.++|++|+..+ +..++|++|.|.+++
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhH
Confidence 46899999999999999999999999999999999987 6999999999999999999999655 569999999999976
Q ss_pred C
Q 025313 245 T 245 (255)
Q Consensus 245 ~ 245 (255)
.
T Consensus 186 ~ 186 (193)
T 2voo_A 186 D 186 (193)
T ss_dssp T
T ss_pred H
Confidence 4
No 188
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.70 E-value=3.1e-17 Score=126.51 Aligned_cols=80 Identities=28% Similarity=0.550 Sum_probs=74.7
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 025313 165 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 244 (255)
Q Consensus 165 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~ 244 (255)
+.++|||+|||+.+++++|+++|++||.|.++++++++.+|.++|||||+|.+.++|++|++. +..++|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 478999999999999999999999999999999999998999999999999999999999974 678999999999886
Q ss_pred CC
Q 025313 245 TT 246 (255)
Q Consensus 245 ~~ 246 (255)
+.
T Consensus 80 ~~ 81 (167)
T 2cjk_A 80 PR 81 (167)
T ss_dssp CH
T ss_pred ch
Confidence 53
No 189
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.70 E-value=2.5e-18 Score=125.01 Aligned_cols=110 Identities=11% Similarity=0.187 Sum_probs=56.8
Q ss_pred CCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh-
Q 025313 43 QIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT- 121 (255)
Q Consensus 43 ~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~- 121 (255)
|.+++.|| |||||. ++|+++|.++|.++ |.|.+|+|+.+. +.++|||||+|.+.++|++|+
T Consensus 2 P~~~~~lf-V~nLp~-----------~~te~~L~~~F~~~-----G~v~~v~i~~d~-~~~kg~afV~f~~~~~A~~Ai~ 63 (115)
T 4f25_A 2 PLGSGNIF-IKNLDK-----------SIDNKALYDTFSAF-----GNILSCKVVCDE-NGSKGYGFVHFETQEAAERAIE 63 (115)
T ss_dssp ---CCEEE-EESCCT-----------TCCHHHHHHHHGGG-----SCEEEEEEEEET-TEEEEEEEEEESCHHHHHHHHH
T ss_pred CCCCCEEE-ECCCCC-----------CCCHHHHHHHHhcc-----CCEEEEEEeecC-CCCCceEEEEECCHHHHHHHHH
Confidence 34567788 999999 99999999999954 999999998763 558999999999999997777
Q ss_pred CCCCCcee-cCCCCCCCCCcCCCCCCCCCCcCCCCCCCCCCCCCccceEEEcCCCCCCCHHH
Q 025313 122 GVPGVLSV-QPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKT 182 (255)
Q Consensus 122 ~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~ 182 (255)
.|+|.... +.........+ ...............+|||+|||+.+|++.
T Consensus 64 ~l~~~~~~g~~i~V~~a~~~------------~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 64 KMNGMLLNDRKVFVGRFKSR------------KEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp HHTTCEETTEECEEEESSCC------------CC----------------------------
T ss_pred HcCCCEECCEEEEEEECCCc------------cccccccccccCCCCceEeCCCCCCccccc
Confidence 46775321 11110000000 000011112223456799999999998763
No 190
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.70 E-value=6.2e-17 Score=125.55 Aligned_cols=83 Identities=28% Similarity=0.410 Sum_probs=76.2
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCC--CcceEEEEEeCCHHHHHHHHHHhCCceeC---CEEEE
Q 025313 165 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISK--RSKGYAFIEYTTEEAASAALKEMNGKIIN---GWMIV 239 (255)
Q Consensus 165 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g--~~rg~aFV~F~~~~~A~~Al~~l~g~~l~---g~~l~ 239 (255)
..++|||+|||+.+++++|+++|++||.|.++++++++.+| +++|||||+|.+.++|++|++.|||..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 36799999999999999999999999999999999999776 89999999999999999999999998876 67888
Q ss_pred EEEecCCC
Q 025313 240 VDVAKTTP 247 (255)
Q Consensus 240 V~~a~~~~ 247 (255)
+.++.+..
T Consensus 82 ~~~~~~~~ 89 (175)
T 3nmr_A 82 MKPADSEK 89 (175)
T ss_dssp EEECGGGC
T ss_pred Eccccccc
Confidence 88887654
No 191
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.5e-16 Score=113.04 Aligned_cols=85 Identities=16% Similarity=0.361 Sum_probs=72.6
Q ss_pred CCCccceEEEcCCCCCCC-----------HHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 025313 162 TQIKTKKLFVTGLSFYTS-----------EKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNG 230 (255)
Q Consensus 162 ~~~~~~~l~V~nLp~~~t-----------~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g 230 (255)
.+.++++|+|+||..... +++|+++|++||.|..|.| .++ .++|||||+|.+.++|++|+..|||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 445689999999944332 5899999999999999966 554 3899999999999999999999999
Q ss_pred ceeCCEEEEEEEecCCCCCC
Q 025313 231 KIINGWMIVVDVAKTTPKYS 250 (255)
Q Consensus 231 ~~l~g~~l~V~~a~~~~~~~ 250 (255)
..++|++|+|.++.+..+..
T Consensus 87 ~~~~gr~l~v~~a~~~~~~~ 106 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTTDYQ 106 (112)
T ss_dssp CEETTEECEEEECCSCCCSS
T ss_pred CEECCcEEEEEEeCCCCCcc
Confidence 99999999999998865443
No 192
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.68 E-value=2e-16 Score=132.45 Aligned_cols=82 Identities=22% Similarity=0.389 Sum_probs=76.0
Q ss_pred CCccceEEEcCCCCCCCHHHHH----HHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLR----AAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMI 238 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~----~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l 238 (255)
..+.++|||+|||+.+++++|+ ++|++||.|.+|++.+ +|+++|||||+|.+.++|.+|++.|||..+.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 4558999999999999999977 8999999999999875 78899999999999999999999999999999999
Q ss_pred EEEEecCCC
Q 025313 239 VVDVAKTTP 247 (255)
Q Consensus 239 ~V~~a~~~~ 247 (255)
+|.+++...
T Consensus 83 ~v~~a~~~~ 91 (282)
T 3pgw_A 83 RIQYAKTDS 91 (282)
T ss_pred EEEEeccCc
Confidence 999997654
No 193
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.67 E-value=9.3e-17 Score=130.34 Aligned_cols=79 Identities=24% Similarity=0.423 Sum_probs=71.2
Q ss_pred CCccceEEEcCCCCCC---------CHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 025313 163 QIKTKKLFVTGLSFYT---------SEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKII 233 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~---------t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l 233 (255)
....++|||+|||..+ ++++|+++|++||+|++|+|+. ++|||||+|.+.++|+.|+++|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3458899999999998 7999999999999999999985 479999999999999999999999999
Q ss_pred ------------CCEEEEEEEecCCC
Q 025313 234 ------------NGWMIVVDVAKTTP 247 (255)
Q Consensus 234 ------------~g~~l~V~~a~~~~ 247 (255)
.|+.|.|.||...+
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC---
T ss_pred eccccccccccCCCCEEEEEEccCCC
Confidence 89999999998765
No 194
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.66 E-value=4.5e-16 Score=111.01 Aligned_cols=83 Identities=14% Similarity=0.197 Sum_probs=72.2
Q ss_pred CccceEEEcCC--CCCCC--------HHHHHHHHhcCCCEEEEEEEecCCC--CCcceEEEEEeCCHHHHHHHHHHhCCc
Q 025313 164 IKTKKLFVTGL--SFYTS--------EKTLRAAFEGFGELVEVKIIMDKIS--KRSKGYAFIEYTTEEAASAALKEMNGK 231 (255)
Q Consensus 164 ~~~~~l~V~nL--p~~~t--------~~~L~~~F~~fG~i~~v~i~~d~~~--g~~rg~aFV~F~~~~~A~~Al~~l~g~ 231 (255)
.+++.|.+.|+ |..+. +++|++.|++||.|.+|.|++++.+ ++++|+|||+|.+.++|.+|++.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35788999998 44443 3689999999999999999998754 468999999999999999999999999
Q ss_pred eeCCEEEEEEEecCC
Q 025313 232 IINGWMIVVDVAKTT 246 (255)
Q Consensus 232 ~l~g~~l~V~~a~~~ 246 (255)
.++||+|+|.++...
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999998643
No 195
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.65 E-value=9e-17 Score=114.50 Aligned_cols=72 Identities=22% Similarity=0.431 Sum_probs=65.5
Q ss_pred EcCCCCCCCHHHHHHHH------------hcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEE
Q 025313 171 VTGLSFYTSEKTLRAAF------------EGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMI 238 (255)
Q Consensus 171 V~nLp~~~t~~~L~~~F------------~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l 238 (255)
+.|||+.+++++|+++| ++||.|.+|.|+++. +|+++|||||+|.+.++|.+|+..|||..++||+|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56788888888777666 999999999999887 58999999999999999999999999999999999
Q ss_pred EEEEe
Q 025313 239 VVDVA 243 (255)
Q Consensus 239 ~V~~a 243 (255)
+|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 196
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.65 E-value=5.4e-17 Score=126.22 Aligned_cols=84 Identities=18% Similarity=0.273 Sum_probs=74.0
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 025313 162 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 241 (255)
Q Consensus 162 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~ 241 (255)
...+.++|||+|||+.+++++|+++|++||.+.. .++.+..+|.++|||||+|.+.++|.+|+ .|||..+.|++|+|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEe
Confidence 3456899999999999999999999999998766 34455558899999999999999999999 699999999999999
Q ss_pred EecCCC
Q 025313 242 VAKTTP 247 (255)
Q Consensus 242 ~a~~~~ 247 (255)
++.+..
T Consensus 87 ~~~~~~ 92 (175)
T 1fje_B 87 KPKGRD 92 (175)
T ss_dssp CCCCSS
T ss_pred cCCCcc
Confidence 998654
No 197
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.64 E-value=5.1e-16 Score=126.22 Aligned_cols=79 Identities=24% Similarity=0.392 Sum_probs=73.9
Q ss_pred CCccceEEEcCCCC-CCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 025313 163 QIKTKKLFVTGLSF-YTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 241 (255)
Q Consensus 163 ~~~~~~l~V~nLp~-~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~ 241 (255)
..+.++|||+|||+ .+++++|+++|++||.|.+|++.+++ +|||||+|.+.++|++|++.|||..+.|++|+|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34578999999999 99999999999999999999999875 7899999999999999999999999999999999
Q ss_pred EecCC
Q 025313 242 VAKTT 246 (255)
Q Consensus 242 ~a~~~ 246 (255)
++...
T Consensus 106 ~a~~~ 110 (229)
T 2adc_A 106 LSKHQ 110 (229)
T ss_dssp CCSCC
T ss_pred EecCc
Confidence 99865
No 198
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.62 E-value=2.2e-15 Score=109.54 Aligned_cols=81 Identities=17% Similarity=0.276 Sum_probs=71.6
Q ss_pred ccceEEEcCCCC--CC---CHHHHHHHHhcCCCEEEEEEEecCC----CCCcceEEEEEeCCHHHHHHHHHHhCCceeCC
Q 025313 165 KTKKLFVTGLSF--YT---SEKTLRAAFEGFGELVEVKIIMDKI----SKRSKGYAFIEYTTEEAASAALKEMNGKIING 235 (255)
Q Consensus 165 ~~~~l~V~nLp~--~~---t~~~L~~~F~~fG~i~~v~i~~d~~----~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g 235 (255)
++++|++.|+-. .+ -+++|++.|++||.|.+|.|++++. +++++|+|||+|.+.++|.+|++.|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 588999999832 22 3689999999999999999999864 45788999999999999999999999999999
Q ss_pred EEEEEEEecC
Q 025313 236 WMIVVDVAKT 245 (255)
Q Consensus 236 ~~l~V~~a~~ 245 (255)
|.|+|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999864
No 199
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.61 E-value=6.9e-16 Score=122.39 Aligned_cols=76 Identities=25% Similarity=0.420 Sum_probs=72.0
Q ss_pred cceEEEcCCCC-CCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEec
Q 025313 166 TKKLFVTGLSF-YTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 244 (255)
Q Consensus 166 ~~~l~V~nLp~-~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~ 244 (255)
.++|||+|||+ .+++++|+++|++||.|..|++++++ +|||||+|.+.++|.+|+..|||..+.|++|+|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 67999999999 99999999999999999999998875 7899999999999999999999999999999999998
Q ss_pred CC
Q 025313 245 TT 246 (255)
Q Consensus 245 ~~ 246 (255)
..
T Consensus 78 ~~ 79 (198)
T 1qm9_A 78 HQ 79 (198)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 200
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.60 E-value=4.4e-15 Score=123.04 Aligned_cols=78 Identities=27% Similarity=0.422 Sum_probs=72.1
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 242 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~ 242 (255)
....++|||+|||+.+|+++|+++|++||.|..|.+.+ ++|||||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 45578999999999999999999999999999999864 478999999999999999999999999999999999
Q ss_pred ecCC
Q 025313 243 AKTT 246 (255)
Q Consensus 243 a~~~ 246 (255)
+.+.
T Consensus 93 a~~~ 96 (261)
T 3sde_A 93 ATHG 96 (261)
T ss_dssp CCCS
T ss_pred cccC
Confidence 8754
No 201
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.58 E-value=1e-14 Score=112.79 Aligned_cols=76 Identities=21% Similarity=0.477 Sum_probs=68.7
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcC----C-------CEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 025313 165 KTKKLFVTGLSFYTSEKTLRAAFEGF----G-------ELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKII 233 (255)
Q Consensus 165 ~~~~l~V~nLp~~~t~~~L~~~F~~f----G-------~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l 233 (255)
+.++|||+|||+.+++++|+++|++| | .|.++.+. .++|||||+|.++++|.+|+ .|||..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 47899999999999999999999999 6 77777765 35889999999999999999 9999999
Q ss_pred CCEEEEEEEecCCC
Q 025313 234 NGWMIVVDVAKTTP 247 (255)
Q Consensus 234 ~g~~l~V~~a~~~~ 247 (255)
.|++|+|.++....
T Consensus 76 ~g~~i~v~~~~~~~ 89 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQ 89 (172)
T ss_dssp TTEECEEECCSSCC
T ss_pred cCceeeecCCcccC
Confidence 99999999987653
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=3.4e-14 Score=100.06 Aligned_cols=76 Identities=21% Similarity=0.262 Sum_probs=63.7
Q ss_pred cceEEEcCCC-------CCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEE
Q 025313 166 TKKLFVTGLS-------FYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMI 238 (255)
Q Consensus 166 ~~~l~V~nLp-------~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l 238 (255)
..+|-|.-.. ..+++++|+++|++||.|.+|.|+ ++++|||||+|.+.++|++|++.+++ +.|++|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 4455565443 458999999999999999999997 46899999999999999999988655 679999
Q ss_pred EEEEecCCCC
Q 025313 239 VVDVAKTTPK 248 (255)
Q Consensus 239 ~V~~a~~~~~ 248 (255)
+|.|+++++.
T Consensus 83 ~V~~a~~~~~ 92 (100)
T 2d9o_A 83 KISWLEGQPQ 92 (100)
T ss_dssp EEECSSCCCC
T ss_pred EEEEccCCCC
Confidence 9999987653
No 203
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.57 E-value=1.1e-14 Score=115.28 Aligned_cols=75 Identities=21% Similarity=0.493 Sum_probs=67.0
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcC----C-------CEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 025313 165 KTKKLFVTGLSFYTSEKTLRAAFEGF----G-------ELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKII 233 (255)
Q Consensus 165 ~~~~l~V~nLp~~~t~~~L~~~F~~f----G-------~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l 233 (255)
..++|||+|||+.+++++|+++|++| | .|.++.+ +.++|||||+|.+.++|++|+ .|||..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 36899999999999999999999999 5 5666665 456899999999999999999 9999999
Q ss_pred CCEEEEEEEecCC
Q 025313 234 NGWMIVVDVAKTT 246 (255)
Q Consensus 234 ~g~~l~V~~a~~~ 246 (255)
.|++|+|.++...
T Consensus 76 ~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 76 QGQSLKIRRPHDY 88 (198)
T ss_dssp TTEEEEEECCCCC
T ss_pred cCceEEEeCCCCC
Confidence 9999999998764
No 204
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.51 E-value=6.6e-14 Score=119.42 Aligned_cols=77 Identities=25% Similarity=0.330 Sum_probs=66.9
Q ss_pred CCCccceEEEcC--CCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC---CE
Q 025313 162 TQIKTKKLFVTG--LSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIIN---GW 236 (255)
Q Consensus 162 ~~~~~~~l~V~n--Lp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~---g~ 236 (255)
...++.+|||+| |+..+++++|+++|++||+|.+|.+.. +||||||+|++.++|++|++.|||..+. |+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 345688999998 688999999999999999999987753 4789999999999999999999999873 44
Q ss_pred --EEEEEEec
Q 025313 237 --MIVVDVAK 244 (255)
Q Consensus 237 --~l~V~~a~ 244 (255)
.|.|.++.
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 67888874
No 205
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.6e-14 Score=102.62 Aligned_cols=68 Identities=13% Similarity=0.062 Sum_probs=60.6
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
.....+++| |||||+ ++|+++|.++|.+ ||.|.+|+|+.+..|+++|||||+|.++++|++|+
T Consensus 7 ~~~~~~~lf-V~~Lp~-----------~~te~~L~~~F~~-----~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai 69 (103)
T 1s79_A 7 NDVKNRSVY-IKGFPT-----------DATLDDIKEWLED-----KGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFV 69 (103)
T ss_dssp SCSGGGCEE-EECCCT-----------TCCHHHHHHHHHT-----SSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHH
T ss_pred ccCCCCEEE-EECCCC-----------CCCHHHHHHHHhh-----cCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHH
Confidence 445667888 999999 9999999999994 59999999998777999999999999999999999
Q ss_pred CCCCC
Q 025313 122 GVPGV 126 (255)
Q Consensus 122 ~~~g~ 126 (255)
.++|.
T Consensus 70 ~~~~~ 74 (103)
T 1s79_A 70 ETPGQ 74 (103)
T ss_dssp TSSCC
T ss_pred HcCCC
Confidence 87764
No 206
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.50 E-value=1e-13 Score=100.01 Aligned_cols=78 Identities=14% Similarity=0.248 Sum_probs=66.7
Q ss_pred CccceEEEcCCCCCC----------CHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 025313 164 IKTKKLFVTGLSFYT----------SEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKII 233 (255)
Q Consensus 164 ~~~~~l~V~nLp~~~----------t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l 233 (255)
.+++.|.+.|+=..- -+++|++.|++||.|.+|.|.++. ++|+|||+|.+.++|.+|++.|||..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 457789999883322 136889999999999999987653 589999999999999999999999999
Q ss_pred CCEEEEEEEecC
Q 025313 234 NGWMIVVDVAKT 245 (255)
Q Consensus 234 ~g~~l~V~~a~~ 245 (255)
+||.|+|.++..
T Consensus 81 ~GR~i~v~~~~~ 92 (114)
T 3s6e_A 81 AGKMITAAYVPL 92 (114)
T ss_dssp TTEECEEEEECH
T ss_pred CCEEEEEEEEcH
Confidence 999999999864
No 207
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.47 E-value=6.9e-15 Score=106.58 Aligned_cols=104 Identities=13% Similarity=0.133 Sum_probs=76.3
Q ss_pred CCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhC
Q 025313 43 QIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG 122 (255)
Q Consensus 43 ~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~ 122 (255)
+..++++| |+|||. ++|+++|.++|.++ |.|.+++++ .++.++|||||+|.+.++|++|+.
T Consensus 5 ~~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G~v~~v~i~--~~~~~~g~afV~f~~~~~A~~A~~ 65 (115)
T 3lqv_A 5 PEVNRILY-IRNLPY-----------KITAEEMYDIFGKY-----GPIRQIRVG--NTPETRGTAYVVYEDIFDAKNAVD 65 (115)
T ss_dssp TTCCSEEE-EESCCT-----------TCCHHHHHHHHHTT-----SCEEEEEEE--CSTTTTTCEEEEESSHHHHHHHHH
T ss_pred CCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEe--eCCCCCcEEEEEECCHHHHHHHHH
Confidence 44556788 999999 99999999999954 999999987 457779999999999999987776
Q ss_pred -CCCCceecCCCCCCCCCcCCCCCCCCCCcCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHhcCCC
Q 025313 123 -VPGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGE 192 (255)
Q Consensus 123 -~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~ 192 (255)
|+|.. +.+..+......+.. . -++++...++++|+++|++||.
T Consensus 66 ~l~g~~--------------~~g~~l~v~~a~~~~---------~----~~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 66 HLSGFN--------------VSNRYLVVLYYNANR---------A----FQKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHTTCB--------------SSSCBCEEEECCHHH---------H----TTTSCHHHHHHHHHHHHHHHCC
T ss_pred HcCCCE--------------ECCeEEEEEEecCCh---------h----hhhhhHhHhHHHHHHHHHHhCC
Confidence 67643 111111111100000 0 0577888899999999999984
No 208
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.46 E-value=4.4e-14 Score=98.04 Aligned_cols=60 Identities=10% Similarity=0.135 Sum_probs=53.4
Q ss_pred cccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhC-CccccceEE-eecCCccceEEeeeCCHHHHHHHhC
Q 025313 46 TTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLG-NEKDAQMCI-YHVSWQSNFGFCCELDDECAQELTG 122 (255)
Q Consensus 46 s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G-~v~~v~i~~-~~~~~~~g~aFV~f~~~e~a~~a~~ 122 (255)
|+++| |+|||. ++|+++|.++|.++ | .|.+|+++. ..+|+++|||||+|.+.++|++|++
T Consensus 1 S~~i~-v~nLp~-----------~~te~~l~~~F~~~-----G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~ 62 (91)
T 2lxi_A 1 SNIVM-LRMLPQ-----------AATEDDIRGQLQSH-----GVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWME 62 (91)
T ss_dssp CCEEE-EETCCS-----------SCCHHHHHHHHHHH-----TCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHH
T ss_pred CCEEE-EeCCCC-----------CCCHHHHHHHHHHh-----CCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHH
Confidence 45677 999999 99999999999966 9 899999887 4679999999999999999988874
No 209
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.45 E-value=4.4e-14 Score=99.88 Aligned_cols=58 Identities=14% Similarity=0.205 Sum_probs=49.9
Q ss_pred cccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhC-CCCC
Q 025313 48 LLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG-VPGV 126 (255)
Q Consensus 48 ~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~-~~g~ 126 (255)
++| |+|||. ++|+++|.++|.++ |.|.++++..+ ++|||||+|.+.++|++|++ |+|.
T Consensus 2 ~l~-V~nLp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~ 60 (101)
T 2hvz_A 2 KVY-VGNLGT-----------GAGKGELERAFSYY-----GPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGK 60 (101)
T ss_dssp EEE-EECCCS-----------SCSHHHHHHHHHHH-----CCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHS
T ss_pred EEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCC
Confidence 466 888888 99999999999966 99999998754 89999999999999977776 5653
No 210
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.44 E-value=4.2e-14 Score=99.69 Aligned_cols=67 Identities=15% Similarity=0.230 Sum_probs=57.2
Q ss_pred CCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEE-eecCCccceEEeeeCCHHHHHHHhC
Q 025313 44 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDECAQELTG 122 (255)
Q Consensus 44 ~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~-~~~~~~~g~aFV~f~~~e~a~~a~~ 122 (255)
...+.|| |+|||. ++|+++|.++|.++ |.|.+++++. ..+|+++|||||+|.++++|++|++
T Consensus 17 ~~gt~lf-V~nLp~-----------~~te~~L~~~F~~~-----G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~ 79 (99)
T 4fxv_A 17 FQGTNLI-VNYLPQ-----------NMTQDELRSLFSSI-----GEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 79 (99)
T ss_dssp CCCSEEE-EESCCT-----------TCCHHHHHHHHHTT-----SCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHH
Confidence 3445688 999999 99999999999954 9999999987 4579999999999999999977774
Q ss_pred -CCCCc
Q 025313 123 -VPGVL 127 (255)
Q Consensus 123 -~~g~~ 127 (255)
|+|..
T Consensus 80 ~lng~~ 85 (99)
T 4fxv_A 80 TLNGLR 85 (99)
T ss_dssp HHTTCE
T ss_pred HhCCCE
Confidence 67753
No 211
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=3.9e-14 Score=100.44 Aligned_cols=67 Identities=6% Similarity=-0.094 Sum_probs=58.9
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
.+....++| |+|||+ ++|+++|+++|.++ |. .+|+|+.+.+++++|||||+|.++++|++|+
T Consensus 11 ~~~~~~~l~-V~nLp~-----------~~te~~l~~~F~~~-----G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al 72 (102)
T 1wez_A 11 QSTTGHCVH-MRGLPY-----------RATENDIYNFFSPL-----NP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAM 72 (102)
T ss_dssp CCSSSCEEE-EESCCT-----------TCCHHHHHHSSCSC-----CC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHH
T ss_pred CCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHHc-----Cc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHH
Confidence 556667788 999999 99999999999954 94 4999988779999999999999999999999
Q ss_pred CCCCC
Q 025313 122 GVPGV 126 (255)
Q Consensus 122 ~~~g~ 126 (255)
++++.
T Consensus 73 ~~~~~ 77 (102)
T 1wez_A 73 AKDKA 77 (102)
T ss_dssp TTSSC
T ss_pred HhCCC
Confidence 88764
No 212
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=9e-14 Score=98.89 Aligned_cols=68 Identities=9% Similarity=0.026 Sum_probs=59.1
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccc-cceEEeecCCccceEEeeeCCHHHHHHH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKD-AQMCIYHVSWQSNFGFCCELDDECAQEL 120 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~-v~i~~~~~~~~~g~aFV~f~~~e~a~~a 120 (255)
......++| |+|||+ ++|+++|.++|.++ |.|.+ |+|+.+.+|+++|||||+|.++++|++|
T Consensus 11 ~~~~~~~l~-V~nLp~-----------~~te~~l~~~F~~~-----G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A 73 (104)
T 1wg5_A 11 DTANDGFVR-LRGLPF-----------GCSKEEIVQFFSGL-----EIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKA 73 (104)
T ss_dssp SCSCCCEEE-EESCCT-----------TCCHHHHHHHTTTC-----CEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHH
T ss_pred CCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCcceeEEEEECCCCCcceEEEEEECCHHHHHHH
Confidence 334556777 999999 99999999999955 99987 8887788999999999999999999999
Q ss_pred hCCCCC
Q 025313 121 TGVPGV 126 (255)
Q Consensus 121 ~~~~g~ 126 (255)
+..+|.
T Consensus 74 ~~~~~~ 79 (104)
T 1wg5_A 74 LKKHKE 79 (104)
T ss_dssp HTTTTC
T ss_pred HHhCcc
Confidence 987653
No 213
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.42 E-value=1e-13 Score=100.98 Aligned_cols=68 Identities=6% Similarity=-0.128 Sum_probs=59.8
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCC---ccccceEEeecCCccceEEeeeCCHHHHH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGN---EKDAQMCIYHVSWQSNFGFCCELDDECAQ 118 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~---v~~v~i~~~~~~~~~g~aFV~f~~~e~a~ 118 (255)
......++| |+|||+ ++|+++|.++|.++ |. |.+|+|+.+..|+++|||||+|.+.++|+
T Consensus 13 ~~~~~~~l~-V~nLp~-----------~~te~~l~~~F~~~-----G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~ 75 (118)
T 2db1_A 13 EGGEGYVVK-LRGLPW-----------SCSIEDVQNFLSDC-----TIHDGVAGVHFIYTREGRQSGEAFVELESEDDVK 75 (118)
T ss_dssp CBCCCCEEE-EESCCT-----------TCCHHHHHHHTTTS-----CBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHH
T ss_pred CCCCCcEEE-EeCCCC-----------CCCHHHHHHHHHHc-----CCccCceeEEEEECCCCCCCeEEEEEECCHHHHH
Confidence 345566788 999999 99999999999955 98 89999998777999999999999999999
Q ss_pred HHhCCCCC
Q 025313 119 ELTGVPGV 126 (255)
Q Consensus 119 ~a~~~~g~ 126 (255)
+|++++|.
T Consensus 76 ~Al~~~g~ 83 (118)
T 2db1_A 76 LALKKDRE 83 (118)
T ss_dssp HHGGGTTE
T ss_pred HHHhcCCC
Confidence 99988774
No 214
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=1.1e-13 Score=100.17 Aligned_cols=68 Identities=6% Similarity=0.001 Sum_probs=60.1
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCc-cccceEEeecCCccceEEeeeCCHHHHHHH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNE-KDAQMCIYHVSWQSNFGFCCELDDECAQEL 120 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v-~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a 120 (255)
.+...++|| |+|||+ ++|+++|.++|.++ |.| .+|+|+.+.+|+++|||||+|.+.++|++|
T Consensus 11 ~~~~~~~l~-V~nLp~-----------~~t~~~l~~~F~~~-----g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~A 73 (114)
T 2cpy_A 11 VNSAKVCAH-ITNIPF-----------SITKMDVLQFLEGI-----PVDENAVHVLVDNNGQGLGQALVQFKNEDDARKS 73 (114)
T ss_dssp CCSCCCEEE-EESCCT-----------TSCHHHHHHHTTTS-----CCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHH
T ss_pred CCCCccEEE-EeCcCC-----------cCCHHHHHHHHHhC-----CCcCCeEEEEECCCCCcceEEEEEECCHHHHHHH
Confidence 445567788 999999 99999999999954 999 899998877999999999999999999999
Q ss_pred hCCCCC
Q 025313 121 TGVPGV 126 (255)
Q Consensus 121 ~~~~g~ 126 (255)
++++|.
T Consensus 74 l~~~~~ 79 (114)
T 2cpy_A 74 ERLHRK 79 (114)
T ss_dssp GGGCSE
T ss_pred HHhCCC
Confidence 887663
No 215
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.41 E-value=1.1e-13 Score=103.20 Aligned_cols=67 Identities=6% Similarity=-0.125 Sum_probs=58.9
Q ss_pred CCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCC---ccccceEEeecCCccceEEeeeCCHHHHHH
Q 025313 43 QIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGN---EKDAQMCIYHVSWQSNFGFCCELDDECAQE 119 (255)
Q Consensus 43 ~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~---v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~ 119 (255)
.....++| |+|||+ ++|+++|.++|.++ |. |.+|+++.+..|+++|||||+|.++++|++
T Consensus 41 ~~~~~~lf-VgnLp~-----------~~te~dL~~~F~~~-----G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~ 103 (136)
T 2hgl_A 41 GGEGFVVK-LRGLPW-----------SCSVEDVQNFLSDC-----TIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKM 103 (136)
T ss_dssp CCTTCEEE-EESCCT-----------TCCHHHHHHHTTTC-----CCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHH
T ss_pred CCCCCEEE-EeCCCC-----------CCCHHHHHHHHHHh-----CCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHH
Confidence 34456677 999999 99999999999955 99 899999987779999999999999999999
Q ss_pred HhCCCCC
Q 025313 120 LTGVPGV 126 (255)
Q Consensus 120 a~~~~g~ 126 (255)
|++++|.
T Consensus 104 Al~~~g~ 110 (136)
T 2hgl_A 104 ALKKDRE 110 (136)
T ss_dssp HHTTTEE
T ss_pred HHhcCCC
Confidence 9987763
No 216
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=9.1e-14 Score=99.62 Aligned_cols=64 Identities=11% Similarity=0.031 Sum_probs=56.7
Q ss_pred CcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhCCC
Q 025313 45 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGVP 124 (255)
Q Consensus 45 ~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~~~ 124 (255)
...++| |+|||+ ++|+++|+++|. .+ .|.+|+|+.+..|+++|||||+|.++++|++|+.++
T Consensus 15 ~~~~v~-V~nLp~-----------~~te~dl~~~F~-----~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~ 76 (109)
T 2dnn_A 15 DDLYVS-VHGMPF-----------SAMENDVRDFFH-----GL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 76 (109)
T ss_dssp HHHEEE-EECCCS-----------SCCHHHHHHHTT-----TS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTT
T ss_pred CCCEEE-EeCCCC-----------CCCHHHHHHHhc-----cC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcC
Confidence 345677 999999 999999999999 55 688999988778999999999999999999999888
Q ss_pred CC
Q 025313 125 GV 126 (255)
Q Consensus 125 g~ 126 (255)
|.
T Consensus 77 ~~ 78 (109)
T 2dnn_A 77 RM 78 (109)
T ss_dssp TE
T ss_pred CC
Confidence 74
No 217
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=8.1e-13 Score=93.78 Aligned_cols=68 Identities=13% Similarity=0.189 Sum_probs=58.7
Q ss_pred CCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhC
Q 025313 43 QIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG 122 (255)
Q Consensus 43 ~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~ 122 (255)
...+.+|| |+|||. ++|+++|.++|.+ .||.|.+|+++.+.+++++|||||+|.+.++|++|+.
T Consensus 6 ~~~~~~l~-V~nLp~-----------~~t~~~l~~~F~~----~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~ 69 (104)
T 2dhg_A 6 SGPEYSLF-VGDLTP-----------DVDDGMLYEFFVK----VYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALT 69 (104)
T ss_dssp SSCCCCEE-EECCCT-----------TCCHHHHHHHHHH----HCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHH
T ss_pred CCCCcEEE-EeCCCC-----------CCCHHHHHHHHHH----hCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHH
Confidence 34556788 999999 9999999999995 0499999999987799999999999999999977776
Q ss_pred -CCCC
Q 025313 123 -VPGV 126 (255)
Q Consensus 123 -~~g~ 126 (255)
|+|.
T Consensus 70 ~l~g~ 74 (104)
T 2dhg_A 70 ECQGA 74 (104)
T ss_dssp HTTTC
T ss_pred HccCC
Confidence 7764
No 218
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.40 E-value=2e-13 Score=90.99 Aligned_cols=61 Identities=16% Similarity=0.279 Sum_probs=54.2
Q ss_pred ccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEee-cCCccceEEeeeCCHHHHHHHhCCCCC
Q 025313 49 LFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYH-VSWQSNFGFCCELDDECAQELTGVPGV 126 (255)
Q Consensus 49 ~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~-~~~~~g~aFV~f~~~e~a~~a~~~~g~ 126 (255)
+| |+|||. ++|+++|.++|.++ |.|.+++++.+. +|+++|||||+|.++++|++|++++|.
T Consensus 2 l~-v~nlp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~ 63 (75)
T 2mss_A 2 IF-VGGLSV-----------NTTVEDVKHYFEQF-----GKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFH 63 (75)
T ss_dssp EE-EECCCS-----------SCCHHHHHHHHHTT-----SCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCC
T ss_pred EE-EecCCC-----------CCCHHHHHHHHHhc-----CCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCC
Confidence 55 888888 99999999999955 999999988754 799999999999999999999988764
No 219
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.40 E-value=1.6e-13 Score=98.15 Aligned_cols=68 Identities=6% Similarity=-0.056 Sum_probs=59.2
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCC---ccccceEEeecCCccceEEeeeCCHHHHH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGN---EKDAQMCIYHVSWQSNFGFCCELDDECAQ 118 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~---v~~v~i~~~~~~~~~g~aFV~f~~~e~a~ 118 (255)
......++| |+|||+ ++|+++|.++|.++ |. |.+|+++.+..|+++|||||+|.+.++|+
T Consensus 7 ~~~~~~~l~-V~nLp~-----------~~te~~l~~~F~~~-----g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~ 69 (107)
T 2lmi_A 7 EVDDVFLIR-AQGLPW-----------SCTMEDVLNFFSDC-----RIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQ 69 (107)
T ss_dssp CCSSCCEEE-EECCCS-----------SCCSHHHHHHTTTS-----CBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHH
T ss_pred CCCCccEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCcCCcceEEEEECCCCCEeeEEEEEECCHHHHH
Confidence 445566677 999999 99999999999954 87 89999988777999999999999999999
Q ss_pred HHhCCCCC
Q 025313 119 ELTGVPGV 126 (255)
Q Consensus 119 ~a~~~~g~ 126 (255)
+|+.++|.
T Consensus 70 ~Al~~~~~ 77 (107)
T 2lmi_A 70 KALEKHRM 77 (107)
T ss_dssp HHHTTTTC
T ss_pred HHHHhCcc
Confidence 99988764
No 220
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.39 E-value=1.7e-13 Score=92.81 Aligned_cols=63 Identities=10% Similarity=0.063 Sum_probs=53.7
Q ss_pred ccccCCCCCCccEEEecCCCCCCC------CHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHH
Q 025313 47 TLLFPLGTTKHWLVRMDKPGVGVV------TKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQEL 120 (255)
Q Consensus 47 ~~~~~~~nl~~~~~~~~~~~~~~v------t~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a 120 (255)
+++| |+|||. ++ |+++|.++|.++ |.|.++++. ..+|+++|||||+|.+.++|++|
T Consensus 2 ~~l~-V~nLp~-----------~~~~~~~~t~~~l~~~F~~~-----G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~A 63 (81)
T 2krb_A 2 SVIV-VDNVPQ-----------VGPDRLEKLKNVIHKIFSKF-----GKITNDFYP-EEDGKTKGYIFLEYASPAHAVDA 63 (81)
T ss_dssp CEEE-EESCCC-----------CCTTTHHHHHHHHHHHHHTT-----CCEEEEECC-CBTTBCCCEEEEEESSHHHHHHH
T ss_pred CEEE-EeCCCC-----------CcHHHHHHHHHHHHHHHhhc-----CCeEEEEec-CCCCcEeEEEEEEECCHHHHHHH
Confidence 4577 889988 78 779999999954 999999987 67899999999999999999777
Q ss_pred hC-CCCCc
Q 025313 121 TG-VPGVL 127 (255)
Q Consensus 121 ~~-~~g~~ 127 (255)
+. |+|..
T Consensus 64 i~~lng~~ 71 (81)
T 2krb_A 64 VKNADGYK 71 (81)
T ss_dssp HTTSSSCC
T ss_pred HHHhcCcc
Confidence 76 67743
No 221
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.39 E-value=6.6e-13 Score=90.13 Aligned_cols=60 Identities=13% Similarity=0.148 Sum_probs=50.8
Q ss_pred CcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhC-C
Q 025313 45 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG-V 123 (255)
Q Consensus 45 ~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~-~ 123 (255)
+|..|+ ||||++ .+|+++|+++|.++ |+|.++++.. ++|||||+|.++++|++|++ |
T Consensus 6 ~~~wL~-VgNL~~-----------~~te~~L~~lF~q~-----G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~L 63 (89)
T 2wbr_A 6 GSSWLL-LKNLTA-----------QIDGPTLRTLCMQH-----GPLVSFHPYL-----NQGIALCKYTTREEANKAQMAL 63 (89)
T ss_dssp CCCEEE-EECCCT-----------TCCCHHHHHHHHHH-----SCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHH
T ss_pred ccceEE-EeCCCc-----------cCCHHHHHHHHHhh-----CCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHh
Confidence 466678 899999 99999999999977 9999999853 79999999999999966654 4
Q ss_pred CCC
Q 025313 124 PGV 126 (255)
Q Consensus 124 ~g~ 126 (255)
||.
T Consensus 64 n~~ 66 (89)
T 2wbr_A 64 NNC 66 (89)
T ss_dssp TTE
T ss_pred cCC
Confidence 653
No 222
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.39 E-value=1.1e-13 Score=99.46 Aligned_cols=66 Identities=9% Similarity=0.030 Sum_probs=56.8
Q ss_pred CCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEee-cCCccceEEeeeCCHHHHHHHhC
Q 025313 44 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYH-VSWQSNFGFCCELDDECAQELTG 122 (255)
Q Consensus 44 ~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~-~~~~~g~aFV~f~~~e~a~~a~~ 122 (255)
+..+++| |+||++ ++|+++|.++|.+ ||.|.+|+|+.+. +++++|||||+|.+.++|++|++
T Consensus 4 ~p~~~lf-V~nL~~-----------~~te~~L~~~F~~-----~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~ 66 (110)
T 3s8s_A 4 IPLKEVT-FARLND-----------NVRETFLKDMCRK-----YGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVK 66 (110)
T ss_dssp SCCCEEE-EESCCT-----------TCCHHHHHHHHTT-----TSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred CCCcEEE-EECCCC-----------CCCHHHHHHHHHh-----cCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHH
Confidence 3456688 999999 9999999999994 4999999998854 59999999999999999977764
Q ss_pred -CCCC
Q 025313 123 -VPGV 126 (255)
Q Consensus 123 -~~g~ 126 (255)
|||.
T Consensus 67 ~lng~ 71 (110)
T 3s8s_A 67 NLHLT 71 (110)
T ss_dssp HHTTC
T ss_pred HhCCC
Confidence 6775
No 223
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=3.7e-13 Score=98.50 Aligned_cols=65 Identities=12% Similarity=0.031 Sum_probs=56.9
Q ss_pred CCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCc----cccceEEeecCCccceEEeeeCCHHHHHH
Q 025313 44 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNE----KDAQMCIYHVSWQSNFGFCCELDDECAQE 119 (255)
Q Consensus 44 ~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v----~~v~i~~~~~~~~~g~aFV~f~~~e~a~~ 119 (255)
....++| |+|||+ ++|+++|+++|.++ |.| .+|+|+.+.+|+++|||||+|.++++|++
T Consensus 21 ~~~~~v~-V~nLp~-----------~~te~dl~~~F~~~-----g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~ 83 (123)
T 2dha_A 21 ENQVIVR-MRGLPF-----------TATAEEVVAFFGQH-----CPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQN 83 (123)
T ss_dssp CSCCEEE-ECSCCT-----------TCCHHHHHHHHHTT-----SCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHH
T ss_pred CCCCEEE-EeCCCC-----------CCCHHHHHHHHHhh-----CCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHH
Confidence 3445677 999999 99999999999955 875 68999888899999999999999999999
Q ss_pred HhCCCC
Q 025313 120 LTGVPG 125 (255)
Q Consensus 120 a~~~~g 125 (255)
|+..++
T Consensus 84 Al~~~~ 89 (123)
T 2dha_A 84 ALRKHK 89 (123)
T ss_dssp HHTTTT
T ss_pred HHHhCC
Confidence 998765
No 224
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.38 E-value=3.9e-13 Score=95.76 Aligned_cols=69 Identities=10% Similarity=0.138 Sum_probs=59.7
Q ss_pred CCCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHHH
Q 025313 41 NSQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQE 119 (255)
Q Consensus 41 ~~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~ 119 (255)
......++|| |+|||. ++|+++|.++|.++ |.|.+|+++.+ .+++++|||||+|.+.++|++
T Consensus 8 ~~~~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~ 70 (106)
T 2dgp_A 8 MKDHDAIKLF-IGQIPR-----------NLDEKDLKPLFEEF-----GKIYELTVLKDRFTGMHKGCAFLTYCERESALK 70 (106)
T ss_dssp CCCTTCEEEE-EESCCT-----------TCCHHHHHHHHHHH-----SCCCEEECCCCSSSCSCCSEEEEEESSHHHHHH
T ss_pred CCCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeeEEEEEecCCCCCcceEEEEEECCHHHHHH
Confidence 3556777888 999999 99999999999966 99999998874 468999999999999999977
Q ss_pred HhC-CCCC
Q 025313 120 LTG-VPGV 126 (255)
Q Consensus 120 a~~-~~g~ 126 (255)
|+. |+|.
T Consensus 71 A~~~l~g~ 78 (106)
T 2dgp_A 71 AQSALHEQ 78 (106)
T ss_dssp HHHHHTTT
T ss_pred HHHHhcCC
Confidence 775 6764
No 225
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=5.7e-13 Score=93.71 Aligned_cols=69 Identities=13% Similarity=0.148 Sum_probs=59.2
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCcc-ccceEEe-ecCCccceEEeeeCCHHHHHH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEK-DAQMCIY-HVSWQSNFGFCCELDDECAQE 119 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~-~v~i~~~-~~~~~~g~aFV~f~~~e~a~~ 119 (255)
....+++|| |+|||. ++|+++|.++|.++ |.|. +++++.+ .+++++|||||+|.+.++|++
T Consensus 5 ~~~~~~~l~-V~nLp~-----------~~t~~~l~~~F~~~-----G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~ 67 (99)
T 2div_A 5 SSGMAASLW-MGDLEP-----------YMDENFISRAFATM-----GETVMSVKIIRNRLTGIPAGYCFVEFADLATAEK 67 (99)
T ss_dssp CCSSSSEEE-ECSCCT-----------TCCHHHHHHHHHHT-----TCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHH
T ss_pred CCCCccEEE-EeCCCC-----------CCCHHHHHHHHHHh-----CCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHH
Confidence 445567788 999999 99999999999955 9999 9999875 488999999999999999977
Q ss_pred HhC-CCCCc
Q 025313 120 LTG-VPGVL 127 (255)
Q Consensus 120 a~~-~~g~~ 127 (255)
|+. |+|..
T Consensus 68 A~~~l~g~~ 76 (99)
T 2div_A 68 CLHKINGKP 76 (99)
T ss_dssp HHHTTTTSE
T ss_pred HHHHHcCCc
Confidence 765 78753
No 226
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=5.6e-13 Score=94.36 Aligned_cols=61 Identities=15% Similarity=0.137 Sum_probs=53.3
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
.+..+++|| |+|||+ ++|+++|+++|.++ |.|.+|+++.+ ||||||+|.+.++|++|+
T Consensus 12 ~~~~~~~Lf-V~nLp~-----------~vte~dL~~lF~~f-----G~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai 69 (105)
T 1sjq_A 12 SGVPSRVIH-IRKLPI-----------DVTEGEVISLGLPF-----GKVTNLLMLKG-----KNQAFIEMNTEEAANTMV 69 (105)
T ss_dssp CCCCCCEEE-ECSCCT-----------TSCHHHHHHHHHHH-----CCEEEEEEETT-----TTEEEEEESSHHHHHHHH
T ss_pred CCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCEEEEEEEcC-----CCEEEEEECCHHHHHHHH
Confidence 566677888 999999 99999999999966 99999998743 899999999999997777
Q ss_pred C-CC
Q 025313 122 G-VP 124 (255)
Q Consensus 122 ~-~~ 124 (255)
+ ++
T Consensus 70 ~~l~ 73 (105)
T 1sjq_A 70 NYYT 73 (105)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 5 44
No 227
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=3.1e-13 Score=95.27 Aligned_cols=68 Identities=13% Similarity=0.207 Sum_probs=59.4
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
....++++| |+|||. ++|+++|.++|.++ |.|.+++++.+.+|+++|||||+|.+.++|++|+
T Consensus 13 ~~~~~~~l~-v~nlp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~ 75 (100)
T 2do4_A 13 TSLEKHKLF-ISGLPF-----------SCTKEELEEICKAH-----GTVKDLRLVTNRAGKPKGLAYVEYENESQASQAV 75 (100)
T ss_dssp SCCCCSCEE-EESCCT-----------TCCHHHHHHHHTTT-----SCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHH
T ss_pred cCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhC-----CCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHH
Confidence 456677788 999999 99999999999954 9999999998778999999999999999997777
Q ss_pred -CCCCC
Q 025313 122 -GVPGV 126 (255)
Q Consensus 122 -~~~g~ 126 (255)
.|+|.
T Consensus 76 ~~l~g~ 81 (100)
T 2do4_A 76 MKMDGM 81 (100)
T ss_dssp HHHTTE
T ss_pred HHhCCC
Confidence 55663
No 228
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=2.7e-13 Score=99.50 Aligned_cols=68 Identities=9% Similarity=-0.004 Sum_probs=57.9
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceE-EeecCCccceEEeeeCCHHHHHHH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMC-IYHVSWQSNFGFCCELDDECAQEL 120 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~-~~~~~~~~g~aFV~f~~~e~a~~a 120 (255)
+.....+|| |+|||+ ++|+++|.++|.+ ||.|.++.++ ...+|+++|||||+|.+.++|++|
T Consensus 21 ~~~~~~~l~-V~nLp~-----------~~te~~l~~~F~~-----~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~A 83 (124)
T 1wel_A 21 PHEAGFCVY-LKGLPF-----------EAENKHVIDFFKK-----LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAA 83 (124)
T ss_dssp CCCCCCEEE-EECCCT-----------TCCHHHHHHHSCS-----SCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHH
T ss_pred CCCCCcEEE-EeCCCC-----------CCCHHHHHHHHHh-----cCCccceEEEEECCCCCCCeEEEEEECCHHHHHHH
Confidence 345556788 999999 9999999999995 4999996644 467899999999999999999999
Q ss_pred hCCCCC
Q 025313 121 TGVPGV 126 (255)
Q Consensus 121 ~~~~g~ 126 (255)
+.++|.
T Consensus 84 l~~~g~ 89 (124)
T 1wel_A 84 LCRHKQ 89 (124)
T ss_dssp HTSCSB
T ss_pred HHhCCC
Confidence 988764
No 229
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.37 E-value=1.8e-13 Score=93.99 Aligned_cols=67 Identities=15% Similarity=0.266 Sum_probs=58.7
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHHHH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQEL 120 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a 120 (255)
.....+++| |+|||. ++|+++|.++|.++ |.|.+++++.+ .+|+++|||||+|.+.++|++|
T Consensus 7 ~~~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A 69 (87)
T 3s7r_A 7 NEEDAGKMF-VGGLSW-----------DTSKKDLKDYFTKF-----GEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKV 69 (87)
T ss_dssp CCSCTTEEE-EECCCT-----------TCCHHHHHHHHTTT-----SCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHH
T ss_pred CCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhC-----CCEEEEEEeecCCCCccccEEEEEECCHHHHHHH
Confidence 455667788 999999 99999999999954 99999999875 4699999999999999999888
Q ss_pred hCCCC
Q 025313 121 TGVPG 125 (255)
Q Consensus 121 ~~~~g 125 (255)
+++++
T Consensus 70 ~~~~~ 74 (87)
T 3s7r_A 70 LDQKE 74 (87)
T ss_dssp HHSSC
T ss_pred HHhCC
Confidence 87765
No 230
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.37 E-value=3.9e-13 Score=97.51 Aligned_cols=66 Identities=14% Similarity=0.139 Sum_probs=57.8
Q ss_pred CCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhC-
Q 025313 44 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG- 122 (255)
Q Consensus 44 ~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~- 122 (255)
..++++| |+|||. ++|+++|.++|.++ |.|.+|++..+.+|+++|||||+|.+.++|++|++
T Consensus 5 ~~~~~l~-V~nLp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~ 67 (116)
T 2fy1_A 5 DHPGKLF-IGGLNR-----------ETNEKMLKAVFGKH-----GPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKD 67 (116)
T ss_dssp CSCCEEE-EECCTT-----------TCCHHHHHHHHHTS-----SCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHH
T ss_pred CCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHH
Confidence 3456788 999999 99999999999954 99999999987799999999999999999977775
Q ss_pred CCCC
Q 025313 123 VPGV 126 (255)
Q Consensus 123 ~~g~ 126 (255)
|+|.
T Consensus 68 l~g~ 71 (116)
T 2fy1_A 68 MNGK 71 (116)
T ss_dssp CSSC
T ss_pred hCCC
Confidence 7774
No 231
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.37 E-value=3.4e-13 Score=95.91 Aligned_cols=68 Identities=12% Similarity=0.070 Sum_probs=59.3
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
....+++|| |+|||. ++|+++|.++|.++ |.|.+|+++.+.++.++|||||+|.+.++|++|+
T Consensus 11 ~~~~~~~l~-v~nLp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai 73 (105)
T 2dnh_A 11 RGGRDRKLF-VGMLNK-----------QQSEEDVLRLFQPF-----GVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAI 73 (105)
T ss_dssp SCCCCCEEE-EESCCT-----------TCCHHHHHHHHTTT-----SCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHH
T ss_pred cCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHH
Confidence 334567788 999999 99999999999954 9999999998888999999999999999997777
Q ss_pred C-CCCC
Q 025313 122 G-VPGV 126 (255)
Q Consensus 122 ~-~~g~ 126 (255)
. |+|.
T Consensus 74 ~~l~g~ 79 (105)
T 2dnh_A 74 HALHGS 79 (105)
T ss_dssp HHHSSC
T ss_pred HHHcCC
Confidence 5 6764
No 232
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.37 E-value=1.5e-13 Score=102.69 Aligned_cols=67 Identities=6% Similarity=-0.091 Sum_probs=57.3
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
......+|| |+|||+ ++|+++|+++|.++ | |.+|+|+.+.+++++|||||+|.++++|++|+
T Consensus 42 ~~~~~~~lf-V~nLp~-----------~~te~dL~~~F~~~-----G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al 103 (139)
T 2hgn_A 42 QSTTGHCVH-MRGLPY-----------KATENDIYNFFSPL-----N-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM 103 (139)
T ss_dssp ---CCCCEE-CCSCCT-----------TCCHHHHHHHHCSC-----C-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT
T ss_pred CCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----C-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH
Confidence 445556788 999999 99999999999955 9 77999988778999999999999999999999
Q ss_pred CCCCC
Q 025313 122 GVPGV 126 (255)
Q Consensus 122 ~~~g~ 126 (255)
++++.
T Consensus 104 ~~~g~ 108 (139)
T 2hgn_A 104 SKDRA 108 (139)
T ss_dssp TCCSC
T ss_pred hhCCC
Confidence 88874
No 233
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.37 E-value=1.9e-12 Score=93.63 Aligned_cols=68 Identities=16% Similarity=0.239 Sum_probs=59.7
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHHHH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQEL 120 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a 120 (255)
.....++|| |+|||. ++|+++|.++|.++ |.|.+|+++.+ .++.++|||||+|.+.++|++|
T Consensus 11 ~~~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A 73 (115)
T 2dgo_A 11 DTSNHFHVF-VGDLSP-----------EITTEDIKAAFAPF-----GRISDARVVKDMATGKSKGYGFVSFFNKWDAENA 73 (115)
T ss_dssp CSTTCEEEE-EESCCT-----------TCCHHHHHHHHGGG-----SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH
T ss_pred CCCCCcEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHH
Confidence 556777888 999999 99999999999954 99999999885 4899999999999999999877
Q ss_pred hC-CCCC
Q 025313 121 TG-VPGV 126 (255)
Q Consensus 121 ~~-~~g~ 126 (255)
+. |+|.
T Consensus 74 ~~~l~g~ 80 (115)
T 2dgo_A 74 IQQMGGQ 80 (115)
T ss_dssp HHHTTTC
T ss_pred HHHhCCC
Confidence 75 7775
No 234
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.37 E-value=5.4e-13 Score=88.83 Aligned_cols=60 Identities=10% Similarity=0.209 Sum_probs=53.7
Q ss_pred ccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHHHHhCCCC
Q 025313 49 LFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELTGVPG 125 (255)
Q Consensus 49 ~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a~~~~g 125 (255)
+| |+|||. ++|+++|.++|.++ |.|.+++++.+ .+|.++|||||+|.++++|++|+++++
T Consensus 2 l~-v~nLp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~ 62 (75)
T 1iqt_A 2 IF-VGGLSP-----------DTPEEKIREYFGGF-----GEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKY 62 (75)
T ss_dssp EE-ESCCCS-----------SCCHHHHHHHHHHH-----SCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSS
T ss_pred EE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCC
Confidence 56 899999 99999999999966 99999998774 568999999999999999999998765
No 235
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.36 E-value=2e-13 Score=95.27 Aligned_cols=68 Identities=18% Similarity=0.340 Sum_probs=59.8
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
.....+++| |+|||. ++++++|.++|.++ |.|.+|+++.+.+++++|||||+|.++++|++|+
T Consensus 12 ~~~~~~~l~-v~nlp~-----------~~~~~~l~~~F~~~-----G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~ 74 (95)
T 2ywk_A 12 QEEADRTVF-VGNLEA-----------RVREEILYELFLQA-----GPLTKVTICKDREGKPKSFGFVCFKHPESVSYAI 74 (95)
T ss_dssp CTTGGGEEE-EECCCT-----------TCCHHHHHHHHGGG-----SCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHH
T ss_pred CCCCCCEEE-EECCCC-----------CCCHHHHHHHHHhc-----CCEEEEEEEECCCCCCceEEEEEECCHHHHHHHH
Confidence 445667788 999999 99999999999954 9999999998778999999999999999998887
Q ss_pred C-CCCC
Q 025313 122 G-VPGV 126 (255)
Q Consensus 122 ~-~~g~ 126 (255)
+ |+|.
T Consensus 75 ~~l~g~ 80 (95)
T 2ywk_A 75 ALLNGI 80 (95)
T ss_dssp HHHTTC
T ss_pred HHhCCC
Confidence 6 6764
No 236
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=5.9e-13 Score=94.65 Aligned_cols=68 Identities=15% Similarity=0.201 Sum_probs=58.8
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEee-cCCccceEEeeeCCHHHHHHH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYH-VSWQSNFGFCCELDDECAQEL 120 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~-~~~~~g~aFV~f~~~e~a~~a 120 (255)
....+++|| |+|||. ++|+++|.++|.++ |.|.+|+++.+. ++.++|||||+|.+.++|++|
T Consensus 11 ~~~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A 73 (105)
T 1x5u_A 11 ERNQDATVY-VGGLDE-----------KVSEPLLWELFLQA-----GPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYA 73 (105)
T ss_dssp CCCTTTEEE-EECCCT-----------TCCHHHHHHHHHTT-----SCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHH
T ss_pred cCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHH
Confidence 445667788 999999 99999999999955 999999988754 899999999999999999777
Q ss_pred hC-CCCC
Q 025313 121 TG-VPGV 126 (255)
Q Consensus 121 ~~-~~g~ 126 (255)
+. |+|.
T Consensus 74 ~~~l~g~ 80 (105)
T 1x5u_A 74 IKIMDMI 80 (105)
T ss_dssp HHHSSSC
T ss_pred HHHhCCC
Confidence 76 6764
No 237
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.36 E-value=2.5e-13 Score=93.94 Aligned_cols=62 Identities=11% Similarity=0.197 Sum_probs=52.7
Q ss_pred cccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhC--CccccceEEe-ecCCccceEEeeeCCHHHHHHHh-CC
Q 025313 48 LLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLG--NEKDAQMCIY-HVSWQSNFGFCCELDDECAQELT-GV 123 (255)
Q Consensus 48 ~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G--~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a~-~~ 123 (255)
++| |||||+ ++|+++|.++|.++ | .|.+++++.+ .+|+++|||||+|.+.++|++|+ .|
T Consensus 3 ~l~-V~nL~~-----------~~t~~~l~~~F~~~-----G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l 65 (90)
T 3p5t_L 3 ALY-IGNLTW-----------WTTDEDLTEAVHSL-----GVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLL 65 (90)
T ss_dssp -CE-EESCCT-----------TCCHHHHHHHHHTT-----TCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHG
T ss_pred EEE-EeCCCC-----------CCCHHHHHHHHHHh-----CCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHc
Confidence 466 999999 99999999999954 9 9999998875 58999999999999999998877 57
Q ss_pred CCC
Q 025313 124 PGV 126 (255)
Q Consensus 124 ~g~ 126 (255)
+|.
T Consensus 66 ~g~ 68 (90)
T 3p5t_L 66 PKR 68 (90)
T ss_dssp GGS
T ss_pred CCC
Confidence 763
No 238
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=4.9e-13 Score=95.09 Aligned_cols=68 Identities=18% Similarity=0.220 Sum_probs=59.5
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHHHH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQEL 120 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a 120 (255)
.....++|| |+|||. ++|+++|.++|.++ |.|.+|+++.+ .+++++|||||+|.++++|++|
T Consensus 12 ~~~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a 74 (105)
T 2dh8_A 12 GADEIGKLF-VGGLDW-----------STTQETLRSYFSQY-----GEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 74 (105)
T ss_dssp CSSSSSEEC-CBSCCT-----------TCCHHHHHHHHHTT-----SCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHH
T ss_pred CCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHH
Confidence 456677788 999999 99999999999954 99999999885 6789999999999999999888
Q ss_pred hCCCCC
Q 025313 121 TGVPGV 126 (255)
Q Consensus 121 ~~~~g~ 126 (255)
+..+|.
T Consensus 75 ~~~~~~ 80 (105)
T 2dh8_A 75 LASRPH 80 (105)
T ss_dssp HHHCSE
T ss_pred HHhCCC
Confidence 876553
No 239
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=7.2e-13 Score=93.71 Aligned_cols=68 Identities=13% Similarity=0.199 Sum_probs=58.8
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHHHH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQEL 120 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a 120 (255)
....+++|| |+|||. ++|+++|.++|.++ |.|.+++++.+ .++.++|||||+|.++++|++|
T Consensus 8 ~~~~~~~l~-v~nLp~-----------~~t~~~l~~~f~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A 70 (102)
T 1x5s_A 8 MASDEGKLF-VGGLSF-----------DTNEQSLEQVFSKY-----GQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 70 (102)
T ss_dssp CCCCCSEEE-EESCCT-----------TCCHHHHHHHHHHH-----SCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHH
T ss_pred CCCCCCEEE-EECCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHH
Confidence 556677788 999999 99999999999966 99999998874 5788999999999999999777
Q ss_pred h-CCCCC
Q 025313 121 T-GVPGV 126 (255)
Q Consensus 121 ~-~~~g~ 126 (255)
+ .|+|.
T Consensus 71 ~~~l~g~ 77 (102)
T 1x5s_A 71 MMAMNGK 77 (102)
T ss_dssp HHHHTTC
T ss_pred HHHhCCC
Confidence 7 56764
No 240
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=5.7e-13 Score=92.89 Aligned_cols=68 Identities=13% Similarity=0.105 Sum_probs=58.5
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHHHH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQEL 120 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a 120 (255)
.+..++++| |+|||. ++|+++|.++|.++ |.|.+++++.+ .+++++|||||+|.+.++|++|
T Consensus 11 ~~~~~~~l~-v~nlp~-----------~~t~~~l~~~f~~~-----G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A 73 (95)
T 2cqc_A 11 NPDPNCCLG-VFGLSL-----------YTTERDLREVFSKY-----GPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 73 (95)
T ss_dssp SCCGGGCEE-EESCCS-----------SCCHHHHHHHHHTT-----SCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHH
T ss_pred CCCCCCEEE-EECCCC-----------CCCHHHHHHHHHhc-----CCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHH
Confidence 556667788 999999 99999999999954 99999999874 4588999999999999999777
Q ss_pred hC-CCCC
Q 025313 121 TG-VPGV 126 (255)
Q Consensus 121 ~~-~~g~ 126 (255)
+. |+|.
T Consensus 74 ~~~l~g~ 80 (95)
T 2cqc_A 74 KERANGM 80 (95)
T ss_dssp HHHHTTE
T ss_pred HHHhCCC
Confidence 76 5764
No 241
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.36 E-value=4.7e-13 Score=94.87 Aligned_cols=68 Identities=9% Similarity=0.088 Sum_probs=58.9
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHHHH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQEL 120 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a 120 (255)
+....++|| |+|||. ++|+++|.++|.+ || |.+|+++.+ .+++++|||||+|.+.++|++|
T Consensus 11 ~~~~~~~l~-V~nLp~-----------~~t~~~l~~~F~~-----~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A 72 (103)
T 2dng_A 11 PTEPPYTAY-VGNLPF-----------NTVQGDIDAIFKD-----LS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEA 72 (103)
T ss_dssp CSSSCEEEE-EESCCT-----------TCCHHHHHHHTTT-----SC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHH
T ss_pred CCCCCeEEE-EeCCCC-----------CCCHHHHHHHHHh-----CC-ceEEEEeecCCCCccceEEEEEECCHHHHHHH
Confidence 556677888 999999 9999999999994 47 999998875 4689999999999999999888
Q ss_pred hCCCCCc
Q 025313 121 TGVPGVL 127 (255)
Q Consensus 121 ~~~~g~~ 127 (255)
+.|+|..
T Consensus 73 ~~l~g~~ 79 (103)
T 2dng_A 73 LTYDGAL 79 (103)
T ss_dssp GGGTTCE
T ss_pred HhhCCCe
Confidence 8888753
No 242
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.36 E-value=4.2e-13 Score=94.36 Aligned_cols=68 Identities=16% Similarity=0.178 Sum_probs=59.0
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEee-cCCccceEEeeeCCHHHHHHH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYH-VSWQSNFGFCCELDDECAQEL 120 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~-~~~~~g~aFV~f~~~e~a~~a 120 (255)
....+++|| |+|||. ++|+++|.++|.++ |.|.+++++.+. +++++|||||+|.+.++|++|
T Consensus 4 ~~~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A 66 (99)
T 1whw_A 4 GSSGSGRLF-VRNLSY-----------TSSEEDLEKLFSAY-----GPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKA 66 (99)
T ss_dssp CCCSCEEEE-EECCCT-----------TCCHHHHHHHHHTT-----SCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHH
T ss_pred CCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHH
Confidence 345667788 999999 99999999999955 999999988755 899999999999999999777
Q ss_pred h-CCCCC
Q 025313 121 T-GVPGV 126 (255)
Q Consensus 121 ~-~~~g~ 126 (255)
+ .|+|.
T Consensus 67 ~~~l~g~ 73 (99)
T 1whw_A 67 YAEVDGQ 73 (99)
T ss_dssp HHHTTTE
T ss_pred HHHhCCC
Confidence 7 67774
No 243
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.36 E-value=1.7e-12 Score=96.17 Aligned_cols=67 Identities=12% Similarity=0.056 Sum_probs=55.8
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccc--cceEEee-cCCccceEEeeeCCHHHHH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKD--AQMCIYH-VSWQSNFGFCCELDDECAQ 118 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~--v~i~~~~-~~~~~g~aFV~f~~~e~a~ 118 (255)
....+++|| |||||+ ++|+++|.++|.++ |.|.. |+|+.+. +|+++|||||+|.+. +|.
T Consensus 19 ~~~~~~~lf-V~nL~~-----------~~te~~L~~~F~~~-----G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~ 80 (131)
T 2m2b_A 19 SENANDTII-LRNLNP-----------HSTMDSILGALAPY-----AVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAA 80 (131)
T ss_dssp CSCCCCEEE-ECSCCT-----------TCCSHHHHHHHGGG-----CCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHH
T ss_pred CCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHHh-----CCcceeeEEEEEcCCCCCcceEEEEEECCH-HHH
Confidence 345667788 999999 99999999999955 99966 8888755 899999999999999 884
Q ss_pred HH-hCCCCC
Q 025313 119 EL-TGVPGV 126 (255)
Q Consensus 119 ~a-~~~~g~ 126 (255)
+| ..|+|.
T Consensus 81 ~Ai~~l~g~ 89 (131)
T 2m2b_A 81 QLLQILQAL 89 (131)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHhcCC
Confidence 44 556774
No 244
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=5e-13 Score=93.42 Aligned_cols=67 Identities=10% Similarity=0.204 Sum_probs=57.6
Q ss_pred CCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCcccc-ceEEe-ecCCccceEEeeeCCHHHHHHHh
Q 025313 44 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDA-QMCIY-HVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 44 ~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v-~i~~~-~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
..++++| |+|||. ++|+++|.++|.++ |.|.++ +++.+ .++.++|||||+|.++++|++|+
T Consensus 3 ~~~~~l~-V~nLp~-----------~~t~~~l~~~F~~~-----G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~ 65 (96)
T 1x5t_A 3 SGSSGIF-IGNLDP-----------EIDEKLLYDTFSAF-----GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAI 65 (96)
T ss_dssp SCCCEEE-EECCCT-----------TCCHHHHHHHHHTT-----SCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHH
T ss_pred CCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHH
Confidence 3456788 999999 99999999999954 999999 88775 78999999999999999997777
Q ss_pred C-CCCCc
Q 025313 122 G-VPGVL 127 (255)
Q Consensus 122 ~-~~g~~ 127 (255)
. |+|..
T Consensus 66 ~~l~g~~ 72 (96)
T 1x5t_A 66 EAMNGQY 72 (96)
T ss_dssp HTTTTCE
T ss_pred HHcCCCE
Confidence 6 77753
No 245
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=3.8e-13 Score=95.37 Aligned_cols=67 Identities=15% Similarity=0.282 Sum_probs=59.3
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
.....++|| |+|||. ++|+++|.++|.++ |.|.+|++..+ ++.++|||||+|.+.++|++|+
T Consensus 11 ~~~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~ 72 (103)
T 2d9p_A 11 TRYQVVNLY-VKNLDD-----------GIDDERLRKAFSPF-----GTITSAKVMME-GGRSKGFGFVCFSSPEEATKAV 72 (103)
T ss_dssp CCSSCCCEE-EECCCT-----------TCCHHHHHHTTTTT-----SCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHH
Confidence 556777888 999999 99999999999954 99999999888 8999999999999999997777
Q ss_pred C-CCCC
Q 025313 122 G-VPGV 126 (255)
Q Consensus 122 ~-~~g~ 126 (255)
. |+|.
T Consensus 73 ~~l~g~ 78 (103)
T 2d9p_A 73 TEMNGR 78 (103)
T ss_dssp HHHTTC
T ss_pred HHhCCC
Confidence 6 6764
No 246
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=3.7e-12 Score=86.54 Aligned_cols=74 Identities=20% Similarity=0.336 Sum_probs=62.7
Q ss_pred CccceEEEcCCCC----CCCH----HHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC
Q 025313 164 IKTKKLFVTGLSF----YTSE----KTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIING 235 (255)
Q Consensus 164 ~~~~~l~V~nLp~----~~t~----~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g 235 (255)
++..||+|.-.+. ..-+ .+|.+.|++||.|..+++..|+ +||+|.+.++|.+|+. |||..++|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 3467788877662 2323 5789999999999999999874 8999999999999996 99999999
Q ss_pred EEEEEEEecCC
Q 025313 236 WMIVVDVAKTT 246 (255)
Q Consensus 236 ~~l~V~~a~~~ 246 (255)
|.|+|+++.+.
T Consensus 76 r~LkV~lkt~d 86 (91)
T 2dnr_A 76 RTITIALKSPS 86 (91)
T ss_dssp EEEEEEECCCS
T ss_pred eEEEEEeCCCC
Confidence 99999998764
No 247
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=5.5e-13 Score=93.79 Aligned_cols=68 Identities=15% Similarity=0.236 Sum_probs=58.9
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHHHH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQEL 120 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a 120 (255)
....+++|| |+|||. ++|+++|.++|.+ ||.|.+|+++.+ .+++++|||||+|.+.++|++|
T Consensus 6 ~~~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~-----~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A 68 (99)
T 2dgs_A 6 SGSKSNKIF-VGGIPH-----------NCGETELREYFKK-----FGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 68 (99)
T ss_dssp CCSSCCEEE-EESCCS-----------SCCHHHHHHHHSS-----SSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHH
T ss_pred CCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHh-----cCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHH
Confidence 345567788 999999 9999999999995 499999998874 4688999999999999999888
Q ss_pred hCCCCC
Q 025313 121 TGVPGV 126 (255)
Q Consensus 121 ~~~~g~ 126 (255)
++++|.
T Consensus 69 ~~~~~~ 74 (99)
T 2dgs_A 69 VNMHFH 74 (99)
T ss_dssp HHHCCC
T ss_pred HHhCCC
Confidence 877764
No 248
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.35 E-value=5.5e-13 Score=94.18 Aligned_cols=66 Identities=14% Similarity=0.145 Sum_probs=56.9
Q ss_pred CCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhCC
Q 025313 44 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGV 123 (255)
Q Consensus 44 ~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~~ 123 (255)
....++| |+|||. ++|+++|.++|.++ |.|.+..+....+++++|||||+|.+.++|++|++|
T Consensus 15 ~~~~~l~-V~nLp~-----------~~t~~~l~~~F~~~-----G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l 77 (101)
T 1fj7_A 15 TTPFNLF-IGNLNP-----------NKSVAELKVAISEL-----FAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALEL 77 (101)
T ss_dssp SCSEEEE-EECCCT-----------TSCHHHHHHHHHHH-----HHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHG
T ss_pred CCCCEEE-EeCCCC-----------CCCHHHHHHHHHHh-----CCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHhc
Confidence 4567788 999999 99999999999966 999884455567899999999999999999888877
Q ss_pred CCC
Q 025313 124 PGV 126 (255)
Q Consensus 124 ~g~ 126 (255)
+|.
T Consensus 78 ~g~ 80 (101)
T 1fj7_A 78 TGL 80 (101)
T ss_dssp GGC
T ss_pred CCc
Confidence 764
No 249
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=5.3e-13 Score=96.35 Aligned_cols=68 Identities=10% Similarity=-0.002 Sum_probs=59.6
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
....+++|| |+|||. ++|+++|.++|.++ |.|.+|+++.+.+++++|||||+|.+.++|++|+
T Consensus 11 ~~~~~~~l~-V~nlp~-----------~~~~~~l~~~f~~~-----G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~ 73 (114)
T 2do0_A 11 AGRLGSTVF-VANLDY-----------KVGWKKLKEVFSMA-----GVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAI 73 (114)
T ss_dssp CCCCCSCEE-EESCCT-----------TCCHHHHHHHHTTT-----SCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHH
T ss_pred cCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHH
Confidence 445567788 999999 99999999999955 9999999998778999999999999999997777
Q ss_pred C-CCCC
Q 025313 122 G-VPGV 126 (255)
Q Consensus 122 ~-~~g~ 126 (255)
. |+|.
T Consensus 74 ~~l~g~ 79 (114)
T 2do0_A 74 SMFNGQ 79 (114)
T ss_dssp HHHTTC
T ss_pred HHhCCC
Confidence 6 6775
No 250
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=4.4e-13 Score=94.81 Aligned_cols=69 Identities=14% Similarity=0.153 Sum_probs=59.2
Q ss_pred CCCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHHH
Q 025313 41 NSQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQE 119 (255)
Q Consensus 41 ~~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~ 119 (255)
......++|| |+|||. ++|+++|.++|.+ ||.|.+|+++.+ .+++++|||||+|.+.++|++
T Consensus 7 ~~~~~~~~l~-V~nLp~-----------~~t~~~l~~~f~~-----~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~ 69 (102)
T 2cqb_A 7 GMATTKRVLY-VGGLAE-----------EVDDKVLHAAFIP-----FGDITDIQIPLDYETEKHRGFAFVEFELAEDAAA 69 (102)
T ss_dssp CSCCCCSCEE-EESCCS-----------SCCHHHHHHHHTT-----TSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHH
T ss_pred CcCCCCCEEE-EeCCCC-----------CCCHHHHHHHhhc-----cCCEEEEEEEecCCCCCcceEEEEEECCHHHHHH
Confidence 3556677788 999999 9999999999995 499999998774 678999999999999999987
Q ss_pred Hh-CCCCC
Q 025313 120 LT-GVPGV 126 (255)
Q Consensus 120 a~-~~~g~ 126 (255)
|+ .|+|.
T Consensus 70 A~~~l~g~ 77 (102)
T 2cqb_A 70 AIDNMNES 77 (102)
T ss_dssp HHHHHTTE
T ss_pred HHHHhCCC
Confidence 77 46764
No 251
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.34 E-value=4.2e-13 Score=98.46 Aligned_cols=66 Identities=14% Similarity=0.040 Sum_probs=56.8
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCcc--ccceEEeecCCccceEEeeeCCHHHHHH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEK--DAQMCIYHVSWQSNFGFCCELDDECAQE 119 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~--~v~i~~~~~~~~~g~aFV~f~~~e~a~~ 119 (255)
.+....++| |+|||+ ++|+++|+++|. .|+ |. +|+|+.+..|+++|||||+|.++++|++
T Consensus 38 ~~~~~~~lf-VgnLp~-----------~~te~dL~~~F~-----~~~-i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~ 99 (126)
T 2hgm_A 38 DSANDGFVR-LRGLPF-----------GCTKEEIVQFFS-----GLE-IVPNGITLPVDPEGKITGEAFVQFASQELAEK 99 (126)
T ss_dssp CSSSCCEEE-EECCCT-----------TCCHHHHHHHTT-----TSC-EEEEEEECCCCSSSSSCSEEEEEESSTTHHHH
T ss_pred CCCCCCEEE-EeCCCC-----------CCCHHHHHHHHh-----cCC-ceeeEEEEEECCCCCCceEEEEEECCHHHHHH
Confidence 445566788 999999 999999999999 444 55 8998887779999999999999999999
Q ss_pred HhCCCC
Q 025313 120 LTGVPG 125 (255)
Q Consensus 120 a~~~~g 125 (255)
|+++++
T Consensus 100 Al~~~~ 105 (126)
T 2hgm_A 100 ALGKHK 105 (126)
T ss_dssp HHTTTT
T ss_pred HHHHCC
Confidence 998765
No 252
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=8.8e-13 Score=91.26 Aligned_cols=67 Identities=12% Similarity=0.028 Sum_probs=59.0
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
+.....++| |+|||+ ++|+++|.++|. .+ .|.+|+++.+.+|+++|||||+|.+.++|++|+
T Consensus 6 ~~~~~~~l~-v~nLp~-----------~~t~~~l~~~F~-----~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~ 67 (91)
T 2dgw_A 6 SGTTCHTVK-LRGAPF-----------NVTEKNVMEFLA-----PL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQAL 67 (91)
T ss_dssp CCCCCCEEE-EECCCS-----------SCCHHHHHHHHT-----TS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHH
T ss_pred CCCCccEEE-EECCCC-----------CCCHHHHHHHHh-----hC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHH
Confidence 445567788 999999 999999999999 56 799999988888999999999999999998888
Q ss_pred CCCCC
Q 025313 122 GVPGV 126 (255)
Q Consensus 122 ~~~g~ 126 (255)
.++|.
T Consensus 68 ~~~g~ 72 (91)
T 2dgw_A 68 KCNRE 72 (91)
T ss_dssp HSCSE
T ss_pred HhCCc
Confidence 78874
No 253
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.34 E-value=2.8e-13 Score=94.64 Aligned_cols=66 Identities=8% Similarity=0.063 Sum_probs=54.8
Q ss_pred CCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCC--ccccceEE-eecCCccceEEeeeCCHHHHHH
Q 025313 43 QIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGN--EKDAQMCI-YHVSWQSNFGFCCELDDECAQE 119 (255)
Q Consensus 43 ~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~--v~~v~i~~-~~~~~~~g~aFV~f~~~e~a~~ 119 (255)
.....+|| |+|||+ ++|+++|.++|.+ ||. |.+|++++ ..+|+++|||||+|.+.++|++
T Consensus 6 ~~~m~tlf-V~nL~~-----------~~tee~L~~~F~~-----~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~ 68 (95)
T 2lkz_A 6 HHHMDTII-LRNIAP-----------HTVVDSIMTALSP-----YASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQ 68 (95)
T ss_dssp SCCCCEEE-EESCCT-----------TCCHHHHHHHSTT-----TCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHH
T ss_pred CCccCEEE-EeCCCC-----------cCCHHHHHHHHHh-----hCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHH
Confidence 34566788 999999 9999999999994 495 67888776 4579999999999999999977
Q ss_pred HhC-CCC
Q 025313 120 LTG-VPG 125 (255)
Q Consensus 120 a~~-~~g 125 (255)
|++ |+|
T Consensus 69 Ai~~lng 75 (95)
T 2lkz_A 69 LLQILQS 75 (95)
T ss_dssp HHHHHHS
T ss_pred HHHHhcC
Confidence 764 454
No 254
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.34 E-value=8.4e-13 Score=92.64 Aligned_cols=68 Identities=7% Similarity=0.009 Sum_probs=58.0
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEE-eecCCccceEEeeeCCHHHHHHH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDECAQEL 120 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~-~~~~~~~g~aFV~f~~~e~a~~a 120 (255)
......++| |+|||. ++|+++|+++|.++ |.|.+++++. ..+|+++|||||+|.++++|++|
T Consensus 11 ~~~~~~~l~-v~nLp~-----------~~t~~~l~~~F~~~-----G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~A 73 (98)
T 2cqp_A 11 GKPGPTIIK-VQNMPF-----------TVSIDEILDFFYGY-----QVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAA 73 (98)
T ss_dssp CCCSSEEEE-EESCCT-----------TCCHHHHHHHTTTS-----CCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHH
T ss_pred CCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHHc-----CCccceEEEEECCCCCeeeEEEEEECCHHHHHHH
Confidence 345567788 999999 99999999999954 9999998776 56789999999999999999777
Q ss_pred h-CCCCC
Q 025313 121 T-GVPGV 126 (255)
Q Consensus 121 ~-~~~g~ 126 (255)
+ .|+|.
T Consensus 74 i~~l~g~ 80 (98)
T 2cqp_A 74 VIDLNDR 80 (98)
T ss_dssp HHHTTTC
T ss_pred HHHhCCC
Confidence 7 67764
No 255
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=5.3e-13 Score=94.79 Aligned_cols=67 Identities=12% Similarity=0.070 Sum_probs=57.8
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEee-c-CCccceEEeeeCCHHHHHH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYH-V-SWQSNFGFCCELDDECAQE 119 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~-~-~~~~g~aFV~f~~~e~a~~ 119 (255)
+...+.++| |+|||. ++|+++|.++|.++ | |.+|+++.+. + ++++|||||+|.+.++|++
T Consensus 11 ~~~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~ 72 (104)
T 1wi8_A 11 PKSPPYTAF-LGNLPY-----------DVTEESIKEFFRGL-----N-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLS 72 (104)
T ss_dssp CSSSCEEEE-EESCCS-----------SCCHHHHHHHTTTS-----C-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHH
T ss_pred CCCCCCEEE-EeCCCC-----------cCCHHHHHHHHHHC-----C-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHH
Confidence 445567788 999999 99999999999954 9 9999988754 3 8999999999999999988
Q ss_pred HhCCCCC
Q 025313 120 LTGVPGV 126 (255)
Q Consensus 120 a~~~~g~ 126 (255)
|+.|+|.
T Consensus 73 A~~l~g~ 79 (104)
T 1wi8_A 73 ALSLNEE 79 (104)
T ss_dssp HHGGGTC
T ss_pred HHhcCCC
Confidence 8888875
No 256
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=1.5e-12 Score=92.28 Aligned_cols=67 Identities=19% Similarity=0.262 Sum_probs=57.3
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
.....++|| |+|||. ++|+++|.++|.++ |.|.+|+++.+. +.++|||||+|.+.++|++|+
T Consensus 11 ~~~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~-~~~~g~afV~f~~~~~a~~A~ 72 (103)
T 2cqi_A 11 DDGQPRTLY-VGNLSR-----------DVTEVLILQLFSQI-----GPCKSCKMITEH-TSNDPYCFVEFYEHRDAAAAL 72 (103)
T ss_dssp CSCCCCEEE-EESCCT-----------TCCHHHHHHHHHHH-----SCEEEEEEECCC-CSSCCEEEEEESSHHHHHHHH
T ss_pred CCCCCCEEE-EeCCCc-----------cCCHHHHHHHHHhc-----CCEeEEEEEecC-CCCCCEEEEEECCHHHHHHHH
Confidence 455667788 999999 99999999999966 999999998763 347999999999999998887
Q ss_pred C-CCCC
Q 025313 122 G-VPGV 126 (255)
Q Consensus 122 ~-~~g~ 126 (255)
. |+|.
T Consensus 73 ~~l~g~ 78 (103)
T 2cqi_A 73 AAMNGR 78 (103)
T ss_dssp HHHTTE
T ss_pred HHhCCC
Confidence 6 7764
No 257
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=6.8e-13 Score=92.35 Aligned_cols=68 Identities=12% Similarity=0.169 Sum_probs=58.4
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHHHH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQEL 120 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a 120 (255)
.++..+++| |+|||. ++++++|.++|.++ |.|.+++++.+ .+++++|||||+|.+.++|++|
T Consensus 12 ~~~~~~~l~-V~nlp~-----------~~t~~~l~~~f~~~-----G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A 74 (94)
T 2e5h_A 12 LAPSKSTVY-VSNLPF-----------SLTNNDLYRIFSKY-----GKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNC 74 (94)
T ss_dssp CCCCTTSEE-EESCCT-----------TSCHHHHHHHTTTT-----SCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHH
T ss_pred CCCCCCEEE-EECCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHH
Confidence 456667788 999999 99999999999954 99999998874 4588999999999999999877
Q ss_pred h-CCCCC
Q 025313 121 T-GVPGV 126 (255)
Q Consensus 121 ~-~~~g~ 126 (255)
+ .|+|.
T Consensus 75 ~~~l~g~ 81 (94)
T 2e5h_A 75 TRAINNK 81 (94)
T ss_dssp HHHTTTE
T ss_pred HHHcCCC
Confidence 7 57764
No 258
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.33 E-value=9.4e-13 Score=95.24 Aligned_cols=68 Identities=18% Similarity=0.226 Sum_probs=58.5
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEee-cCCccceEEeeeCCHHHHHHH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYH-VSWQSNFGFCCELDDECAQEL 120 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~-~~~~~g~aFV~f~~~e~a~~a 120 (255)
.....++|| |+|||. ++|+++|.++|.++ |.|.+|+++.+. +++++|||||+|.+.++|++|
T Consensus 21 ~~~~~~~l~-V~nLp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A 83 (115)
T 2cpz_A 21 EGPEGANLF-IYHLPQ-----------EFGDQDLLQMFMPF-----GNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 83 (115)
T ss_dssp CCSTTCCEE-EESCCS-----------SCCHHHHHHHHGGG-----SCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHH
T ss_pred CCCCCcEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEEECCCCCCcCccEEEEECCHHHHHHH
Confidence 345567788 999999 99999999999954 999999998855 899999999999999999777
Q ss_pred h-CCCCC
Q 025313 121 T-GVPGV 126 (255)
Q Consensus 121 ~-~~~g~ 126 (255)
+ .|+|.
T Consensus 84 ~~~l~g~ 90 (115)
T 2cpz_A 84 IQSMNGF 90 (115)
T ss_dssp HHHHTTC
T ss_pred HHHcCCC
Confidence 7 56764
No 259
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=5e-13 Score=94.75 Aligned_cols=69 Identities=10% Similarity=0.079 Sum_probs=59.9
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHHHH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQEL 120 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a 120 (255)
....+++|| |+|||. ++|+++|.++|.++ |.|.+|+++.+ .+++++|||||+|.+.++|++|
T Consensus 11 ~~~~~~~l~-V~nlp~-----------~~t~~~l~~~f~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A 73 (103)
T 2cq0_A 11 RADDNATIR-VTNLSE-----------DTRETDLQELFRPF-----GSISRIYLAKDKTTGQSKGFAFISFHRREDAARA 73 (103)
T ss_dssp CCSSSEEEE-EESCCT-----------TCCHHHHHTTSTTT-----CCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHH
T ss_pred CCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhC-----CCeEEEEEeecCCCCceeeEEEEEECCHHHHHHH
Confidence 456677788 999999 99999999999955 99999999875 5889999999999999999777
Q ss_pred hC-CCCCc
Q 025313 121 TG-VPGVL 127 (255)
Q Consensus 121 ~~-~~g~~ 127 (255)
+. |+|..
T Consensus 74 ~~~l~g~~ 81 (103)
T 2cq0_A 74 IAGVSGFG 81 (103)
T ss_dssp HHHTTTCE
T ss_pred HHHcCCCe
Confidence 76 77753
No 260
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.33 E-value=5.1e-13 Score=91.17 Aligned_cols=68 Identities=15% Similarity=0.142 Sum_probs=58.2
Q ss_pred CCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHHHHh
Q 025313 43 QIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 43 ~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
...++++| |+|||. ++++++|.++|.++ |.|.+++++.+ .+++++|||||+|.++++|++|+
T Consensus 4 ~~~~~~l~-V~nl~~-----------~~~~~~l~~~f~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 66 (85)
T 3mdf_A 4 ATTKRVLY-VGGLAE-----------EVDDKVLHAAFIPF-----GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAI 66 (85)
T ss_dssp CCCSSEEE-EECCCT-----------TCCHHHHHHHHGGG-----SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEE-EECCCC-----------CCCHHHHHHHHhcc-----CCEEEEEEEECCCCCccccEEEEEECCHHHHHHHH
Confidence 34566788 999999 99999999999954 99999998775 68889999999999999998777
Q ss_pred -CCCCCc
Q 025313 122 -GVPGVL 127 (255)
Q Consensus 122 -~~~g~~ 127 (255)
.|+|..
T Consensus 67 ~~l~g~~ 73 (85)
T 3mdf_A 67 DNMNESE 73 (85)
T ss_dssp HHHTTCE
T ss_pred HHhCCCE
Confidence 567653
No 261
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.3e-12 Score=91.11 Aligned_cols=66 Identities=18% Similarity=0.361 Sum_probs=57.2
Q ss_pred CCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHHHHhC
Q 025313 44 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELTG 122 (255)
Q Consensus 44 ~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a~~ 122 (255)
..++++| |+|||. ++|+++|.++|.++ |.|.+++++.+ .+++++|||||+|.+.++|++|++
T Consensus 3 ~~~~~l~-v~nlp~-----------~~t~~~l~~~f~~~-----G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 65 (95)
T 2dnz_A 3 SGSSGLY-VGSLHF-----------NITEDMLRGIFEPF-----GKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 65 (95)
T ss_dssp SCCCEEE-EESCCT-----------TCCHHHHHHHHTTT-----SCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHH
T ss_pred CCCcEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHH
Confidence 4566788 999999 99999999999954 99999998874 468999999999999999988776
Q ss_pred -CCCC
Q 025313 123 -VPGV 126 (255)
Q Consensus 123 -~~g~ 126 (255)
|+|.
T Consensus 66 ~l~g~ 70 (95)
T 2dnz_A 66 QLNGF 70 (95)
T ss_dssp HHTTC
T ss_pred HhCCC
Confidence 6764
No 262
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.33 E-value=2.3e-12 Score=89.25 Aligned_cols=67 Identities=15% Similarity=0.174 Sum_probs=57.5
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
+....+++| |+|||. ++|+++|+++|.++ |.|.++++.. .+++++|||||+|.+.++|++|+
T Consensus 4 ~~~~~~~l~-V~nlp~-----------~~t~~~l~~~f~~~-----G~v~~~~i~~-~~g~~~g~afV~f~~~~~a~~a~ 65 (92)
T 2dgv_A 4 GSSGACQIF-VRNLPF-----------DFTWKMLKDKFNEC-----GHVLYADIKM-ENGKSKGCGVVKFESPEVAERAC 65 (92)
T ss_dssp SSSSCCEEE-ECSCCT-----------TCCHHHHHHHHHTT-----SCEEEEEEEE-SSSCEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCcEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCEEEEEEEc-cCCCcceEEEEEECCHHHHHHHH
Confidence 345567788 999999 99999999999955 9999999886 58899999999999999997777
Q ss_pred C-CCCC
Q 025313 122 G-VPGV 126 (255)
Q Consensus 122 ~-~~g~ 126 (255)
. |+|.
T Consensus 66 ~~l~g~ 71 (92)
T 2dgv_A 66 RMMNGM 71 (92)
T ss_dssp HHHTTC
T ss_pred HHhCCC
Confidence 5 5664
No 263
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.33 E-value=4.9e-13 Score=91.67 Aligned_cols=67 Identities=18% Similarity=0.234 Sum_probs=56.3
Q ss_pred CCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHHHHh
Q 025313 43 QIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 43 ~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
....+++| |+|||. ++|+++|.++|.++ |.|.+++++.+ .++.++|||||+|.+.++|++|+
T Consensus 3 ~~~~~~l~-v~nlp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 65 (87)
T 3bs9_A 3 LGSHFHVF-VGDLSP-----------EITTAAIAAAFAPF-----GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAI 65 (87)
T ss_dssp ---CEEEE-EESCCT-----------TCCHHHHHHHHGGG-----SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred CCCceEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCEeEEEEEecCCCCccceEEEEEECCHHHHHHHH
Confidence 34556788 999999 99999999999955 99999999885 58999999999999999997777
Q ss_pred C-CCCC
Q 025313 122 G-VPGV 126 (255)
Q Consensus 122 ~-~~g~ 126 (255)
. |+|.
T Consensus 66 ~~l~g~ 71 (87)
T 3bs9_A 66 QQMGGQ 71 (87)
T ss_dssp HHHTTC
T ss_pred HHcCCC
Confidence 6 6764
No 264
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.33 E-value=6.4e-13 Score=91.46 Aligned_cols=66 Identities=11% Similarity=0.168 Sum_probs=57.9
Q ss_pred CcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHHHHhCC
Q 025313 45 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELTGV 123 (255)
Q Consensus 45 ~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a~~~ 123 (255)
.++++| |+|||. ++|+++|.++|.++ |.|.++++..+ .+++++|||||+|.+.++|++|+.+
T Consensus 5 ~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 67 (89)
T 3ucg_A 5 DARSIY-VGNVDY-----------GATAEELEAHFHGC-----GSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLAL 67 (89)
T ss_dssp HHTEEE-EESCCT-----------TCCHHHHHHHHGGG-----CCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGG
T ss_pred cCCEEE-EeCCCC-----------CCCHHHHHHHHHhC-----CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhc
Confidence 356678 999999 99999999999954 99999999885 4899999999999999999888888
Q ss_pred CCCc
Q 025313 124 PGVL 127 (255)
Q Consensus 124 ~g~~ 127 (255)
+|..
T Consensus 68 ~g~~ 71 (89)
T 3ucg_A 68 DESL 71 (89)
T ss_dssp TTCE
T ss_pred CCCE
Confidence 8753
No 265
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.32 E-value=1.3e-12 Score=97.27 Aligned_cols=68 Identities=15% Similarity=0.111 Sum_probs=57.9
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHHHH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQEL 120 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a 120 (255)
.....++|| |+|||. ++|+++|.++|.++ |.|.+|+++.+ .+++++|||||+|.+.++|++|
T Consensus 43 ~~~~~~~l~-V~nLp~-----------~~te~~L~~~F~~~-----G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~A 105 (135)
T 2lea_A 43 DVEGMTSLK-VDNLTY-----------RTSPDTLRRVFEKY-----GRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 105 (135)
T ss_dssp SGGGCCCEE-EECCCS-----------SCHHHHHHHHHGGG-----SCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHH
T ss_pred CCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCEEEEEEEecCCCCccceEEEEEECCHHHHHHH
Confidence 335556788 999999 99999999999954 99999998874 4789999999999999999888
Q ss_pred hC-CCCC
Q 025313 121 TG-VPGV 126 (255)
Q Consensus 121 ~~-~~g~ 126 (255)
+. |+|.
T Consensus 106 i~~l~g~ 112 (135)
T 2lea_A 106 MDAMDGA 112 (135)
T ss_dssp HTTTTTC
T ss_pred HHHcCCC
Confidence 75 6764
No 266
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.32 E-value=9.2e-13 Score=92.67 Aligned_cols=68 Identities=18% Similarity=0.113 Sum_probs=58.7
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccc--------cceEEe-ecCCccceEEeeeC
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKD--------AQMCIY-HVSWQSNFGFCCEL 112 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~--------v~i~~~-~~~~~~g~aFV~f~ 112 (255)
++....+++ |+|||. ++|+++|.++|.++ |.|.+ +++..+ .+|+++|||||+|.
T Consensus 9 ~~~~~~~l~-V~nLp~-----------~~t~~~l~~~F~~~-----G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~ 71 (99)
T 2la6_A 9 SHSDNNTIF-VQGLGE-----------NVTIESVADYFKQI-----GIIKTNKKTGQPMINLYTDRETGKLKGEATVSFD 71 (99)
T ss_dssp SCCCCSEEE-EECCCS-----------SCCHHHHHHHHTTT-----SCBCEETTTTEESEEEEECTTTCSEEEEEEEEBS
T ss_pred CCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHHh-----CCEeeccccccccEEEEecCCCCCeeeEEEEEEC
Confidence 556667788 999999 99999999999955 99999 888875 67999999999999
Q ss_pred CHHHHHHHhC-CCCC
Q 025313 113 DDECAQELTG-VPGV 126 (255)
Q Consensus 113 ~~e~a~~a~~-~~g~ 126 (255)
+.++|++|++ |+|.
T Consensus 72 ~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 72 DPPSAKAAIDWFDGK 86 (99)
T ss_dssp SHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHhCCC
Confidence 9999988775 6764
No 267
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.32 E-value=1.1e-12 Score=97.01 Aligned_cols=68 Identities=13% Similarity=0.105 Sum_probs=58.3
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHHHH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQEL 120 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a 120 (255)
.+..+++|| |+|||. ++|+++|.++|.++ |.|.+|+++.+ .+++++|||||+|.+.++|++|
T Consensus 42 ~~~~~~~l~-V~nLp~-----------~~te~~L~~~F~~~-----G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~A 104 (129)
T 2kxn_B 42 NPDPNCCLG-VFGLSL-----------YTTERDLREVFSKY-----GPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 104 (129)
T ss_dssp CCCCSSCBC-EETCTT-----------SCCHHHHHHHHTTT-----SCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHH
T ss_pred CCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEEecCCCCccceEEEEEECCHHHHHHH
Confidence 455667788 999999 99999999999954 99999998874 5689999999999999999777
Q ss_pred hC-CCCC
Q 025313 121 TG-VPGV 126 (255)
Q Consensus 121 ~~-~~g~ 126 (255)
++ |+|.
T Consensus 105 i~~lng~ 111 (129)
T 2kxn_B 105 KERANGM 111 (129)
T ss_dssp HHHHTTC
T ss_pred HHHhCCC
Confidence 76 6764
No 268
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.32 E-value=4.6e-13 Score=96.04 Aligned_cols=69 Identities=14% Similarity=0.222 Sum_probs=55.2
Q ss_pred CCCCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHH
Q 025313 40 WNSQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQ 118 (255)
Q Consensus 40 ~~~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~ 118 (255)
.+.....+++| |+|||. ++|+++|.++|.++ |.|.+|+++.+ .+|+++|||||+|.+.++|+
T Consensus 19 ~~~~~~~~~lf-V~nLp~-----------~~te~~L~~~F~~~-----G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~ 81 (109)
T 2rs2_A 19 SHMGSSGCKMF-IGGLSW-----------QTTQEGLREYFGQF-----GEVKECLVMRDPLTKRSRGFGFVTFMDQAGVD 81 (109)
T ss_dssp -------CCEE-EESCCT-----------TCCHHHHHHHHTTT-----SCEEEEEECCCTTTCCCTTCEEEEESSHHHHH
T ss_pred cccCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHcc-----CCeEEEEEEECCCCCCcCcEEEEEECCHHHHH
Confidence 34556677888 999999 99999999999954 99999998875 46999999999999999998
Q ss_pred HHhCCCC
Q 025313 119 ELTGVPG 125 (255)
Q Consensus 119 ~a~~~~g 125 (255)
+|+..+|
T Consensus 82 ~Ai~~~~ 88 (109)
T 2rs2_A 82 KVLAQSR 88 (109)
T ss_dssp HHHHSSC
T ss_pred HHHHHCC
Confidence 8886554
No 269
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=2.3e-12 Score=93.30 Aligned_cols=67 Identities=16% Similarity=0.208 Sum_probs=58.1
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHHHH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQEL 120 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a 120 (255)
.....++|| |+|||. ++|+++|.++|.++ |.|.+|+++.+ .+++++|||||+|.+.++|++|
T Consensus 13 ~~~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A 75 (116)
T 2cqd_A 13 KDTTFTKIF-VGGLPY-----------HTTDASLRKYFEGF-----GDIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 75 (116)
T ss_dssp CSCSSSEEE-EECCCS-----------SCCHHHHHHHHHTT-----SCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHH
T ss_pred CCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhC-----CCeeEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 556677788 999999 99999999999954 99999998874 5789999999999999999777
Q ss_pred hCC-CC
Q 025313 121 TGV-PG 125 (255)
Q Consensus 121 ~~~-~g 125 (255)
+.. ++
T Consensus 76 i~~~~~ 81 (116)
T 2cqd_A 76 CKDPNP 81 (116)
T ss_dssp HTCSSC
T ss_pred HHhCCC
Confidence 765 54
No 270
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.31 E-value=4.9e-13 Score=93.25 Aligned_cols=68 Identities=7% Similarity=-0.019 Sum_probs=56.0
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEE-eecCCccceEEeeeCCHHHHHHH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDECAQEL 120 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~-~~~~~~~g~aFV~f~~~e~a~~a 120 (255)
..+...++| |+|||. ++|+++|+++|.++ |.|.+++++. ..+++++|||||+|.++++|++|
T Consensus 11 ~~~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~A 73 (95)
T 2ek1_A 11 GKPGPTVIK-VQNMPF-----------TVSIDEILDFFYGY-----QVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAA 73 (95)
T ss_dssp ----CEEEE-EECCCT-----------TCCHHHHHHHTTTS-----CBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHH
T ss_pred CCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCccceEEEEeCCCCCEeeEEEEEECCHHHHHHH
Confidence 344557788 999999 99999999999954 9999999776 56788999999999999999877
Q ss_pred hC-CCCC
Q 025313 121 TG-VPGV 126 (255)
Q Consensus 121 ~~-~~g~ 126 (255)
++ |+|.
T Consensus 74 i~~l~g~ 80 (95)
T 2ek1_A 74 VIDLNDR 80 (95)
T ss_dssp HHHHTTC
T ss_pred HHHhCCC
Confidence 75 6764
No 271
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.31 E-value=1.9e-12 Score=96.75 Aligned_cols=68 Identities=16% Similarity=0.171 Sum_probs=58.7
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHHHH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQEL 120 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a 120 (255)
.....++|| |+|||. ++|+++|.++|.+ ||.|.+++++.+ .+++++|||||+|.+.++|++|
T Consensus 59 ~~~~~~~l~-v~nlp~-----------~~~~~~l~~~f~~-----~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A 121 (140)
T 2ku7_A 59 SATTKRVLY-VGGLAE-----------EVDDKVLHAAFIP-----FGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAA 121 (140)
T ss_dssp SCSSCCEEE-EECCCT-----------TCCHHHHHHHHGG-----GSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHH
T ss_pred CCCCCcEEE-EEeCCC-----------CCCHHHHHHHHHh-----cCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHH
Confidence 556677788 999999 9999999999995 499999998874 6789999999999999999887
Q ss_pred h-CCCCC
Q 025313 121 T-GVPGV 126 (255)
Q Consensus 121 ~-~~~g~ 126 (255)
+ .|+|.
T Consensus 122 ~~~l~g~ 128 (140)
T 2ku7_A 122 IDNMNES 128 (140)
T ss_dssp HHHSTEE
T ss_pred HHHhCCC
Confidence 7 46764
No 272
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.31 E-value=5.1e-13 Score=94.25 Aligned_cols=68 Identities=12% Similarity=0.061 Sum_probs=56.3
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEee--cCCccceEEeeeCCHHHHHH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYH--VSWQSNFGFCCELDDECAQE 119 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~--~~~~~g~aFV~f~~~e~a~~ 119 (255)
.....+++| |+|||. ++|+++|.++|.++ | |.+|+++.+. +|+++|||||+|.+.++|++
T Consensus 15 ~~~~~~~l~-V~nLp~-----------~~t~~~l~~~F~~~-----G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~ 76 (100)
T 2j76_E 15 PKSPPYTAF-LGNLPY-----------DVTEESIKEFFRGL-----N-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLS 76 (100)
T ss_dssp -----CEEE-ESCCSS-----------CCSSSHHHHHSCSS-----C-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHH
T ss_pred CCCCCcEEE-EeCCCC-----------CCCHHHHHHHHHhc-----C-CeEEEEEecCCcCCccCeEEEEEECCHHHHHH
Confidence 456667788 999999 99999999999954 9 9999988764 89999999999999999988
Q ss_pred HhCCCCCc
Q 025313 120 LTGVPGVL 127 (255)
Q Consensus 120 a~~~~g~~ 127 (255)
|+.|+|..
T Consensus 77 Ai~l~g~~ 84 (100)
T 2j76_E 77 ALSLNEES 84 (100)
T ss_dssp HHHTTTCC
T ss_pred HHhcCCCE
Confidence 88888753
No 273
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=5.8e-13 Score=94.39 Aligned_cols=68 Identities=16% Similarity=0.143 Sum_probs=58.4
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHHHH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQEL 120 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a 120 (255)
....+++|| |+|||. ++|+++|.++|.++ |.|.+|+++.+ .+++++|||||+|.+.++|++|
T Consensus 9 ~~~~~~~l~-V~nLp~-----------~~t~~~l~~~f~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A 71 (103)
T 2dnm_A 9 DVDGMITLK-VDNLTY-----------RTSPDSLRRVFEKY-----GRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDA 71 (103)
T ss_dssp CCSCCCEEE-EESCCT-----------TCCHHHHHHHHTTT-----SCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHH
T ss_pred CCCCCeEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHH
Confidence 445567788 999999 99999999999955 99999998874 4689999999999999999888
Q ss_pred hC-CCCC
Q 025313 121 TG-VPGV 126 (255)
Q Consensus 121 ~~-~~g~ 126 (255)
+. |+|.
T Consensus 72 ~~~l~g~ 78 (103)
T 2dnm_A 72 EAAMDGA 78 (103)
T ss_dssp HHHHSSC
T ss_pred HHHcCCC
Confidence 76 6764
No 274
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=2.3e-12 Score=91.25 Aligned_cols=64 Identities=14% Similarity=0.119 Sum_probs=56.4
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHHHH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQEL 120 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a 120 (255)
.....++|| |+|||. ++|+++|.++|.++ |.|.+|+++.+ .+++++|||||+|.+.++|++|
T Consensus 11 ~~~~~~~l~-v~nlp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A 73 (103)
T 2cqg_A 11 AVQKTSDLI-VLGLPW-----------KTTEQDLKEYFSTF-----GEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKV 73 (103)
T ss_dssp CCCCCCCEE-EESCCS-----------SCCHHHHHHHHGGG-----SCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHH
T ss_pred ccCCCCEEE-EEcCCC-----------cCCHHHHHHHHHhc-----CCeEEEEEEecCCCCCccceEEEEECCHHHHHHH
Confidence 445667788 999999 99999999999954 99999999875 5699999999999999999888
Q ss_pred hC
Q 025313 121 TG 122 (255)
Q Consensus 121 ~~ 122 (255)
+.
T Consensus 74 ~~ 75 (103)
T 2cqg_A 74 MS 75 (103)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 275
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=3.5e-13 Score=97.39 Aligned_cols=66 Identities=9% Similarity=0.146 Sum_probs=57.6
Q ss_pred CCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHHHHhC
Q 025313 44 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELTG 122 (255)
Q Consensus 44 ~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a~~ 122 (255)
..+++|| |+|||. ++|+++|.++|.++ |.|.+|+++.+ .+++++|||||+|.+.++|++|+.
T Consensus 23 ~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 85 (114)
T 2cq4_A 23 RDARTVF-CMQLAA-----------RIRPRDLEDFFSAV-----GKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG 85 (114)
T ss_dssp HHHTEEE-EESCCT-----------TCCHHHHHHHHTTT-----SCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHH
T ss_pred CCCCEEE-EeCCCC-----------CCCHHHHHHHHHhC-----CCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHH
Confidence 4556788 999999 99999999999955 99999998874 458999999999999999988887
Q ss_pred CCCC
Q 025313 123 VPGV 126 (255)
Q Consensus 123 ~~g~ 126 (255)
|+|.
T Consensus 86 l~g~ 89 (114)
T 2cq4_A 86 LTGQ 89 (114)
T ss_dssp HTTE
T ss_pred cCCC
Confidence 7874
No 276
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.30 E-value=1e-12 Score=93.77 Aligned_cols=68 Identities=15% Similarity=0.054 Sum_probs=59.3
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
.....++|| |+|||. .+|+++|.++|.+ ||.|.+|+++.+.+|+++|||||+|.+.++|++|+
T Consensus 25 ~~~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~-----~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~ 87 (107)
T 3ulh_A 25 GVETGGKLL-VSNLDF-----------GVSDADIQELFAE-----FGTLKKAAVHYDRSGRSLGTADVHFERKADALKAM 87 (107)
T ss_dssp CCCCSEEEE-EESCCT-----------TCCHHHHHHHHHT-----TSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHh-----cCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHH
Confidence 345566788 999999 9999999999994 49999999998779999999999999999998777
Q ss_pred C-CCCC
Q 025313 122 G-VPGV 126 (255)
Q Consensus 122 ~-~~g~ 126 (255)
. |+|.
T Consensus 88 ~~l~g~ 93 (107)
T 3ulh_A 88 KQYNGV 93 (107)
T ss_dssp HHHTTC
T ss_pred HHhCCC
Confidence 6 6764
No 277
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.30 E-value=6.9e-13 Score=90.07 Aligned_cols=64 Identities=14% Similarity=0.190 Sum_probs=55.2
Q ss_pred ccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHHHHhC-CC
Q 025313 47 TLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELTG-VP 124 (255)
Q Consensus 47 ~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a~~-~~ 124 (255)
.++| |+|||. ++|+++|.++|.+ ||.|.+++++.+ .+++++|||||+|.++++|++|+. |+
T Consensus 2 ~~l~-V~nlp~-----------~~t~~~l~~~f~~-----~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~ 64 (83)
T 3md1_A 2 FNLF-VGDLNV-----------NVDDETLRNAFKD-----FPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQ 64 (83)
T ss_dssp EEEE-EECCCT-----------TCCHHHHHHHHTT-----STTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHT
T ss_pred eEEE-EeCCCC-----------CCCHHHHHHHHHh-----cCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhc
Confidence 4567 899998 9999999999994 499999999875 679999999999999999987776 67
Q ss_pred CCc
Q 025313 125 GVL 127 (255)
Q Consensus 125 g~~ 127 (255)
|..
T Consensus 65 g~~ 67 (83)
T 3md1_A 65 GQD 67 (83)
T ss_dssp TCE
T ss_pred CCe
Confidence 653
No 278
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.30 E-value=1.9e-12 Score=92.69 Aligned_cols=69 Identities=19% Similarity=0.390 Sum_probs=59.4
Q ss_pred CCCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHHH
Q 025313 41 NSQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQE 119 (255)
Q Consensus 41 ~~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~ 119 (255)
.....++++| |+|||. ++|+++|.++|.++ |.|.+++++.+ .+|+++|||||+|.+.++|++
T Consensus 21 ~~~~~~~~l~-V~nLp~-----------~~te~~l~~~F~~~-----G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~ 83 (108)
T 2jrs_A 21 KGSAGPMRLY-VGSLHF-----------NITEDMLRGIFEPF-----GRIESIQLMMDSETGRSKGYGFITFSDSECAKK 83 (108)
T ss_dssp CSCSSCEEEE-EECCCS-----------SCCHHHHHHHHTTT-----SCEEEEEEEEETTTTEEEEEEEEEESCHHHHHH
T ss_pred cCCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEEEcCCCCccceEEEEEECCHHHHHH
Confidence 3556777888 999999 99999999999954 99999999875 578899999999999999988
Q ss_pred HhC-CCCC
Q 025313 120 LTG-VPGV 126 (255)
Q Consensus 120 a~~-~~g~ 126 (255)
|++ ++|.
T Consensus 84 Ai~~l~g~ 91 (108)
T 2jrs_A 84 ALEQLNGF 91 (108)
T ss_dssp HHHHHTTC
T ss_pred HHHHcCCC
Confidence 775 6764
No 279
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=1.8e-12 Score=90.68 Aligned_cols=66 Identities=8% Similarity=-0.026 Sum_probs=55.8
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHH----HHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMV----DRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECA 117 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~----~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a 117 (255)
+.....++| |+|||+ ++++++|+ ++|.++ |.|.+|+++.+..+ +|||||+|.+.++|
T Consensus 5 ~~~~~~~l~-V~nL~~-----------~~~~~~l~~~l~~~F~~~-----G~v~~v~i~~~~~~--rg~afV~f~~~~~A 65 (96)
T 2dgx_A 5 SSGNGADVQ-VSNIDY-----------RLSRKELQQLLQEAFARH-----GKVKSVELSPHTDY--QLKAVVQMENLQDA 65 (96)
T ss_dssp CCSSCEEEE-EESCCT-----------TSCHHHHHHHHHHHHHHH-----SCEEEEEECSCCST--TCCEEEEESSHHHH
T ss_pred CCCCCCEEE-EECCCC-----------CCCHHHHHHHHHHhcccc-----CcEEEEEEEeCCCC--CeEEEEEECCHHHH
Confidence 445567788 999999 99999999 888865 99999999866555 99999999999999
Q ss_pred HHHhC-CCCC
Q 025313 118 QELTG-VPGV 126 (255)
Q Consensus 118 ~~a~~-~~g~ 126 (255)
++|+. |+|.
T Consensus 66 ~~Ai~~l~g~ 75 (96)
T 2dgx_A 66 IGAVNSLHRY 75 (96)
T ss_dssp HHHHHHHTTE
T ss_pred HHHHHHhCCC
Confidence 77776 7774
No 280
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=1.3e-12 Score=92.96 Aligned_cols=68 Identities=15% Similarity=0.239 Sum_probs=58.3
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHHHH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQEL 120 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a 120 (255)
....++++| |+|||. ++|+++|.++|.++ |.|.+|+++.+ .+|.++|||||+|.+.++|++|
T Consensus 19 ~~~~~~~l~-V~nlp~-----------~~t~~~l~~~f~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A 81 (106)
T 1p27_B 19 RSVEGWILF-VTGVHE-----------EATEEDIHDKFAEY-----GEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAA 81 (106)
T ss_dssp CBTTBEEEE-EECCCT-----------TCCHHHHHHHHGGG-----SCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHH
T ss_pred CCCCCCEEE-EeCCCC-----------CCCHHHHHHHHhcc-----CCeEEEEEEecCCCCceeeEEEEEECCHHHHHHH
Confidence 345567788 999999 99999999999955 99999999874 5689999999999999999877
Q ss_pred hC-CCCC
Q 025313 121 TG-VPGV 126 (255)
Q Consensus 121 ~~-~~g~ 126 (255)
+. |+|.
T Consensus 82 ~~~l~g~ 88 (106)
T 1p27_B 82 MEGLNGQ 88 (106)
T ss_dssp HHHHTTC
T ss_pred HHHhcCC
Confidence 75 6764
No 281
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.29 E-value=3e-12 Score=91.27 Aligned_cols=68 Identities=10% Similarity=0.176 Sum_probs=58.1
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEee--cCCccceEEeeeCCHHHHHH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYH--VSWQSNFGFCCELDDECAQE 119 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~--~~~~~g~aFV~f~~~e~a~~ 119 (255)
....+++|| |+|||. ++|+++|.++|.++ |.|.+|+++.+. ++.++|||||+|.+.++|++
T Consensus 11 ~~~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~ 73 (107)
T 2cph_A 11 KKQTTSKIL-VRNIPF-----------QANQREIRELFSTF-----GELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKK 73 (107)
T ss_dssp CSSCCCCEE-EESCCT-----------TCCHHHHHHHHHTT-----SCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHH
T ss_pred cCCCCCEEE-EeCCCC-----------cCCHHHHHHHHHcc-----CCeEEEEEecCCCCCCCcCceEEEEECCHHHHHH
Confidence 556677788 999999 99999999999954 999999988753 88999999999999999977
Q ss_pred HhC-C-CCC
Q 025313 120 LTG-V-PGV 126 (255)
Q Consensus 120 a~~-~-~g~ 126 (255)
|+. | +|.
T Consensus 74 A~~~l~~~~ 82 (107)
T 2cph_A 74 AFNALCHST 82 (107)
T ss_dssp HHHHHHTCC
T ss_pred HHHHhccCC
Confidence 764 4 554
No 282
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=1.8e-12 Score=91.84 Aligned_cols=68 Identities=15% Similarity=0.207 Sum_probs=57.7
Q ss_pred CCCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHH
Q 025313 41 NSQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQEL 120 (255)
Q Consensus 41 ~~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a 120 (255)
......++|| |+|||. ++|+++|.++|.+ ||.|.+|+++.+.. .++|||||+|.+.++|++|
T Consensus 10 ~~~~~~~~l~-V~nlp~-----------~~t~~~l~~~f~~-----~G~v~~v~i~~~~~-~~~g~afV~f~~~~~a~~A 71 (103)
T 2cq3_A 10 ESKSTPKRLH-VSNIPF-----------RFRDPDLRQMFGQ-----FGKILDVEIIFNER-GSKGFGFVTFENSADADRA 71 (103)
T ss_dssp CCSCCCCEEE-EESCCT-----------TCCHHHHHHHGGG-----TSCEEEEEEECCTT-TTCCEEEEEESCHHHHHHH
T ss_pred CCCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHh-----cCCeEEEEEEecCC-CCcEEEEEEECCHHHHHHH
Confidence 3556677888 999999 9999999999995 49999999987644 4899999999999999777
Q ss_pred hC-CCCC
Q 025313 121 TG-VPGV 126 (255)
Q Consensus 121 ~~-~~g~ 126 (255)
+. |+|.
T Consensus 72 ~~~l~g~ 78 (103)
T 2cq3_A 72 REKLHGT 78 (103)
T ss_dssp HHHHTTC
T ss_pred HHHhCCC
Confidence 75 6764
No 283
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.29 E-value=1.8e-12 Score=90.89 Aligned_cols=65 Identities=22% Similarity=0.308 Sum_probs=55.8
Q ss_pred CcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEee----cCCccceEEeeeCCHHHHHHH
Q 025313 45 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYH----VSWQSNFGFCCELDDECAQEL 120 (255)
Q Consensus 45 ~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~----~~~~~g~aFV~f~~~e~a~~a 120 (255)
.+++|| |+|||. ++|+++|.++|.++ |.|.+|++..+. +++++|||||+|.+.++|++|
T Consensus 4 ~~~~l~-V~nLp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A 66 (98)
T 2cpf_A 4 GSSGLF-IKNLNF-----------STTEETLKGVFSKV-----GAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKA 66 (98)
T ss_dssp CCCCEE-EESCCT-----------TCCHHHHHHHHHTT-----SCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHH
T ss_pred CCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHH
Confidence 456688 999999 99999999999954 999999998754 448899999999999999777
Q ss_pred hC-CCCC
Q 025313 121 TG-VPGV 126 (255)
Q Consensus 121 ~~-~~g~ 126 (255)
+. |+|.
T Consensus 67 ~~~l~g~ 73 (98)
T 2cpf_A 67 LKQLQGH 73 (98)
T ss_dssp HHHSTTC
T ss_pred HHHhCCC
Confidence 76 7775
No 284
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=2e-12 Score=93.13 Aligned_cols=69 Identities=13% Similarity=0.090 Sum_probs=59.0
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCcc--------ccceEEe-ecCCccceEEeeeC
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEK--------DAQMCIY-HVSWQSNFGFCCEL 112 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~--------~v~i~~~-~~~~~~g~aFV~f~ 112 (255)
....+++|| |+|||. ++|+++|.++|.++ |.|. .|++..+ .+++++|||||+|.
T Consensus 11 ~~~~~~~l~-V~nLp~-----------~~t~~~l~~~F~~~-----G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~ 73 (113)
T 2cpe_A 11 EDSDNSAIY-VQGLND-----------SVTLDDLADFFKQC-----GVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYE 73 (113)
T ss_dssp CCCCCCEEE-EECCCT-----------TCCHHHHHHHHTTT-----SCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBS
T ss_pred cCCCCCEEE-EcCCCC-----------CCCHHHHHHHHHhc-----CCEeEccccCccCEEEEEeCCCCCeeeEEEEEEC
Confidence 445667788 999999 99999999999955 9998 6888775 68999999999999
Q ss_pred CHHHHHHHhC-CCCCc
Q 025313 113 DDECAQELTG-VPGVL 127 (255)
Q Consensus 113 ~~e~a~~a~~-~~g~~ 127 (255)
+.++|++|++ |+|..
T Consensus 74 ~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 74 DPPTAKAAVEWFDGKD 89 (113)
T ss_dssp SHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHcCCCc
Confidence 9999988876 67753
No 285
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=4.8e-12 Score=91.38 Aligned_cols=68 Identities=18% Similarity=0.186 Sum_probs=56.7
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEE-eecCCccceEEeeeCCHHHHHHH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDECAQEL 120 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~-~~~~~~~g~aFV~f~~~e~a~~a 120 (255)
+...+++|| |+|||. ++|+++|.++|.++ |.|.++.+.. ..+++++|||||+|.+.++|++|
T Consensus 21 ~~~~~~~l~-V~nLp~-----------~~t~~~l~~~f~~~-----G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~A 83 (115)
T 2cpx_A 21 PGEPNKVLY-LKNLSP-----------RVTERDLVSLFARF-----QEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQA 83 (115)
T ss_dssp CCSCCSEEE-EECCCT-----------TCCHHHHHHHTHHH-----HHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHH
T ss_pred CCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHHh-----CCccceEEEEEcCCCccceEEEEEECCHHHHHHH
Confidence 445567788 999999 99999999999966 9998776544 44899999999999999999777
Q ss_pred hC-CCCC
Q 025313 121 TG-VPGV 126 (255)
Q Consensus 121 ~~-~~g~ 126 (255)
+. |+|.
T Consensus 84 i~~l~g~ 90 (115)
T 2cpx_A 84 LHLVNGY 90 (115)
T ss_dssp HHHSTTC
T ss_pred HHHhCCC
Confidence 75 6774
No 286
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.28 E-value=1.8e-12 Score=94.96 Aligned_cols=66 Identities=5% Similarity=0.126 Sum_probs=58.4
Q ss_pred CcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHHHHhCC
Q 025313 45 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELTGV 123 (255)
Q Consensus 45 ~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a~~~ 123 (255)
..+++| |+|||. ++|+++|.++|.++ |.|.+|+++.+ .+|.++|||||+|.+.++|++|+++
T Consensus 35 ~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l 97 (124)
T 2jwn_A 35 DKRSVY-VGNVDY-----------GSTAQDLEAHFSSC-----GSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAM 97 (124)
T ss_dssp HHTEEE-EEEECT-----------TCCHHHHHHHHHTT-----SCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTT
T ss_pred CCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhc
Confidence 456788 999999 99999999999955 99999999875 5899999999999999999888888
Q ss_pred CCCc
Q 025313 124 PGVL 127 (255)
Q Consensus 124 ~g~~ 127 (255)
+|..
T Consensus 98 ~g~~ 101 (124)
T 2jwn_A 98 DETV 101 (124)
T ss_dssp TTCE
T ss_pred CCCe
Confidence 8753
No 287
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.28 E-value=7.4e-13 Score=93.66 Aligned_cols=66 Identities=15% Similarity=0.290 Sum_probs=58.4
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
....++++| |+|||. ++|+++|.++|.++ |.|.+++++.+.+|+++|||||+|.+.++|++|+
T Consensus 5 ~~~~~~~l~-V~nLp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai 67 (102)
T 2xs2_A 5 GKIMPNTVF-VGGIDV-----------RMDETEIRSFFARY-----GSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIV 67 (102)
T ss_dssp CEEEEEEEE-EECCCT-----------TCCHHHHHHHHGGG-----SCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHT
T ss_pred CCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhC-----CCeEEEEEEECCCCCccceEEEEECCHHHHHHHH
Confidence 345567788 999999 99999999999954 9999999998779999999999999999999998
Q ss_pred CCCC
Q 025313 122 GVPG 125 (255)
Q Consensus 122 ~~~g 125 (255)
. +|
T Consensus 68 ~-~~ 70 (102)
T 2xs2_A 68 E-SQ 70 (102)
T ss_dssp T-CC
T ss_pred h-CC
Confidence 7 44
No 288
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.27 E-value=4.5e-12 Score=94.74 Aligned_cols=68 Identities=13% Similarity=0.163 Sum_probs=58.6
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHHHH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQEL 120 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a 120 (255)
.....++|| |+|||. ++|+++|.++|.++ |.|.+|+++.+ .+++++|||||+|.+.++|++|
T Consensus 38 ~~~~~~~l~-V~nLp~-----------~~~~~~l~~~F~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A 100 (139)
T 1u6f_A 38 EPDVLRNLM-VNYIPT-----------TVDEVQLRQLFERY-----GPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQA 100 (139)
T ss_dssp CTTTTSEEE-EESCST-----------TCCHHHHHHHHHHH-----SCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHH
T ss_pred CCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHH
Confidence 445567788 999999 99999999999966 99999999875 4688999999999999999777
Q ss_pred hC-CCCC
Q 025313 121 TG-VPGV 126 (255)
Q Consensus 121 ~~-~~g~ 126 (255)
++ |+|.
T Consensus 101 ~~~l~g~ 107 (139)
T 1u6f_A 101 IAGLNGF 107 (139)
T ss_dssp HHHTTTE
T ss_pred HHHhCCC
Confidence 76 7774
No 289
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.27 E-value=1.6e-12 Score=92.53 Aligned_cols=63 Identities=10% Similarity=0.074 Sum_probs=54.7
Q ss_pred cccccCCCCCCccEEEecCCCCCCC------CHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHH
Q 025313 46 TTLLFPLGTTKHWLVRMDKPGVGVV------TKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQE 119 (255)
Q Consensus 46 s~~~~~~~nl~~~~~~~~~~~~~~v------t~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~ 119 (255)
++++| |+|||+ .+ |+++|.++|.++ |.|.+|+++ ..+|+++|||||+|.+.++|++
T Consensus 15 ~~~l~-V~nLp~-----------~~~~~~~~t~~~l~~~F~~~-----G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~ 76 (105)
T 2nlw_A 15 DSVIV-VDNVPQ-----------VGPDRLEKLKNVIHKIFSKF-----GKITNDFYP-EEDGKTKGYIFLEYASPAHAVD 76 (105)
T ss_dssp CSEEE-EESCCC-----------CCTTTTTHHHHHHHHHHGGG-----SCEEEEECC-CBTTBSCCEEEEEECSSSHHHH
T ss_pred CCEEE-EeCCCc-----------chhhhhHHHHHHHHHHHhcC-----CCEEEEEee-CCCCCeeeEEEEEECCHHHHHH
Confidence 56678 999999 78 789999999954 999999988 6789999999999999999977
Q ss_pred HhC-CCCC
Q 025313 120 LTG-VPGV 126 (255)
Q Consensus 120 a~~-~~g~ 126 (255)
|+. |+|.
T Consensus 77 Ai~~l~g~ 84 (105)
T 2nlw_A 77 AVKNADGY 84 (105)
T ss_dssp HHHHCSSE
T ss_pred HHHHhCCc
Confidence 765 7774
No 290
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=2e-12 Score=93.31 Aligned_cols=68 Identities=12% Similarity=0.175 Sum_probs=59.1
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
.....++|| |+|||. ++|+++|.++|.+ ||.|.+++++.+.++.++|||||+|.+.++|++|+
T Consensus 21 ~~~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~-----~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~ 83 (114)
T 1x5o_A 21 QEQDPTNLY-ISNLPL-----------SMDEQELENMLKP-----FGQVISTRILRDSSGTSRGVGFARMESTEKCEAVI 83 (114)
T ss_dssp CCCCTTEEE-EESCCT-----------TCCHHHHHHTTTT-----TSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHH
T ss_pred cCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHh-----cCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHH
Confidence 345667788 999999 9999999999995 49999999998779999999999999999997777
Q ss_pred C-CCCC
Q 025313 122 G-VPGV 126 (255)
Q Consensus 122 ~-~~g~ 126 (255)
. |+|.
T Consensus 84 ~~l~g~ 89 (114)
T 1x5o_A 84 GHFNGK 89 (114)
T ss_dssp HHHBTC
T ss_pred HHhCCC
Confidence 5 6764
No 291
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=1e-11 Score=89.82 Aligned_cols=76 Identities=16% Similarity=0.122 Sum_probs=67.5
Q ss_pred CCccceEEEcCCCCC-CCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCC-HHHHHHHHHHhC--CceeCCEEE
Q 025313 163 QIKTKKLFVTGLSFY-TSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTT-EEAASAALKEMN--GKIINGWMI 238 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~-~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~-~~~A~~Al~~l~--g~~l~g~~l 238 (255)
-.++..|||+||++. +++++|+++|++||+|..|.+.++.. .|||+|.+ .++|..|+..|| |..|.|..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 355889999999999 99999999999999999999998753 59999999 899999999994 788999888
Q ss_pred EEEEec
Q 025313 239 VVDVAK 244 (255)
Q Consensus 239 ~V~~a~ 244 (255)
++....
T Consensus 89 ~~evL~ 94 (121)
T 1owx_A 89 TWEVLE 94 (121)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 887654
No 292
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.27 E-value=1.9e-12 Score=92.87 Aligned_cols=68 Identities=9% Similarity=0.241 Sum_probs=58.8
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHHHH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQEL 120 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a 120 (255)
....+++|| |+|||. ++|+++|.++|.++ |.|.+++++.+ .+|.++|||||+|.+.++|++|
T Consensus 22 ~~~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A 84 (110)
T 1oo0_B 22 RSVEGWILF-VTSIHE-----------EAQEDEIQEKFCDY-----GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAA 84 (110)
T ss_dssp CBTTBEEEE-EESCCT-----------TCCHHHHHHHHGGG-----SCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHH
T ss_pred CCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHH
Confidence 445667788 999999 99999999999955 99999998764 5789999999999999999777
Q ss_pred hC-CCCC
Q 025313 121 TG-VPGV 126 (255)
Q Consensus 121 ~~-~~g~ 126 (255)
+. |+|.
T Consensus 85 i~~l~g~ 91 (110)
T 1oo0_B 85 KEALNGA 91 (110)
T ss_dssp HHHHTTC
T ss_pred HHHcCCC
Confidence 76 6775
No 293
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.27 E-value=4.6e-12 Score=90.88 Aligned_cols=66 Identities=12% Similarity=0.157 Sum_probs=56.5
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHHHH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQEL 120 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a 120 (255)
....+++|| |+|||. ++|+++|.++|.+ ||.|.+|+++.+ .++.++|||||+|.+.++|++|
T Consensus 11 ~~~~~~~l~-V~nLp~-----------~~t~~~l~~~F~~-----~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A 73 (111)
T 1x4h_A 11 DVTEGKTVF-IRNLSF-----------DSEEEALGEVLQQ-----FGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKC 73 (111)
T ss_dssp CCCCCCCEE-EESCCT-----------TCCHHHHHHHHHT-----TSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHH
T ss_pred cCCCCCEEE-EECCCC-----------CCCHHHHHHHHHh-----cCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHH
Confidence 445567788 999999 9999999999994 499999998874 5688999999999999999777
Q ss_pred hC-CC
Q 025313 121 TG-VP 124 (255)
Q Consensus 121 ~~-~~ 124 (255)
+. ++
T Consensus 74 ~~~~~ 78 (111)
T 1x4h_A 74 LAAAS 78 (111)
T ss_dssp HHHHC
T ss_pred HHHhc
Confidence 75 45
No 294
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=2.9e-12 Score=90.44 Aligned_cols=63 Identities=14% Similarity=0.077 Sum_probs=52.6
Q ss_pred CCCCCCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHH
Q 025313 38 NPWNSQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECA 117 (255)
Q Consensus 38 ~~~~~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a 117 (255)
+.......+++|| |+|||+ ++|+++|.++|. .||.|.+|+++.+ +|||||+|.+.++|
T Consensus 7 ~~~~~~~p~~~l~-V~nLp~-----------~~te~~L~~~F~-----~fG~v~~v~i~~~-----kg~aFVef~~~~~A 64 (101)
T 2cq1_A 7 GDKMDGAPSRVLH-IRKLPG-----------EVTETEVIALGL-----PFGKVTNILMLKG-----KNQAFLELATEEAA 64 (101)
T ss_dssp CCCCCSSCCSEEE-EESCCT-----------TCCHHHHHHTTT-----TTSCEEEEEEETT-----TTEEEEEESSHHHH
T ss_pred CCCccCCCCCEEE-EeCCCC-----------CCCHHHHHHHHH-----hcCCEEEEEEECC-----CCEEEEEECCHHHH
Confidence 3344556667788 999999 999999999999 4599999987632 89999999999999
Q ss_pred HHHhC
Q 025313 118 QELTG 122 (255)
Q Consensus 118 ~~a~~ 122 (255)
++|++
T Consensus 65 ~~Ai~ 69 (101)
T 2cq1_A 65 ITMVN 69 (101)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77765
No 295
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.27 E-value=1.9e-12 Score=94.05 Aligned_cols=69 Identities=20% Similarity=0.237 Sum_probs=58.6
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHHHH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQEL 120 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a 120 (255)
.....+++| |+|||. ++|+++|+++|.+ ||.|.+++++.+ .+++++|||||+|.+.++|++|
T Consensus 36 ~~~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~-----~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A 98 (118)
T 2khc_A 36 EGPEGCNLF-IYHLPQ-----------EFTDTDLASTFLP-----FGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVA 98 (118)
T ss_dssp CCCCSEEEE-EECSCT-----------TCCHHHHHHHTTT-----SCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHH
T ss_pred CCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHh-----cCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHH
Confidence 345567788 999999 9999999999994 499999998874 5789999999999999999777
Q ss_pred hC-CCCCc
Q 025313 121 TG-VPGVL 127 (255)
Q Consensus 121 ~~-~~g~~ 127 (255)
++ |+|..
T Consensus 99 ~~~l~g~~ 106 (118)
T 2khc_A 99 IKAMNGFQ 106 (118)
T ss_dssp HHHCCCCE
T ss_pred HHHcCCCE
Confidence 75 77743
No 296
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.26 E-value=1.6e-12 Score=90.90 Aligned_cols=64 Identities=17% Similarity=0.272 Sum_probs=55.2
Q ss_pred cccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHHHHh-CC
Q 025313 46 TTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELT-GV 123 (255)
Q Consensus 46 s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a~-~~ 123 (255)
++++| |+|||. ++++++|.++|.++ |.|.+++++.+ .+|+++|||||+|.+.++|++|+ .|
T Consensus 2 ~~~l~-V~nLp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 64 (96)
T 2x1f_A 2 SRVVY-LGSIPY-----------DQTEEQILDLCSNV-----GPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNL 64 (96)
T ss_dssp CSEEE-EESCCT-----------TCCHHHHHHHHHTT-----SCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHH
T ss_pred CcEEE-EECCCC-----------CCCHHHHHHHHHhc-----CCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 45677 999999 99999999999955 99999998875 46899999999999999997777 46
Q ss_pred CCC
Q 025313 124 PGV 126 (255)
Q Consensus 124 ~g~ 126 (255)
+|.
T Consensus 65 ~g~ 67 (96)
T 2x1f_A 65 NGY 67 (96)
T ss_dssp TTC
T ss_pred CCC
Confidence 764
No 297
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.26 E-value=5e-12 Score=92.66 Aligned_cols=67 Identities=15% Similarity=0.044 Sum_probs=58.4
Q ss_pred CCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhC
Q 025313 43 QIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG 122 (255)
Q Consensus 43 ~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~ 122 (255)
...++++| |+|||. ++++++|.++|.++ |.|.+|++..+.+|+++|||||+|.+.++|++|+.
T Consensus 32 ~~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~ 94 (124)
T 2kt5_A 32 VETGAKLL-VSNLDF-----------GVSDADIQELFAEF-----GTLKKAAVDYDRSGRSLGTADVHFERRADALKAMK 94 (124)
T ss_dssp CSSCEEEE-EESCCS-----------SCCHHHHHHHHHTT-----SCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHH
T ss_pred CCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHH
Confidence 34556777 999999 99999999999954 99999999887799999999999999999988776
Q ss_pred -CCCC
Q 025313 123 -VPGV 126 (255)
Q Consensus 123 -~~g~ 126 (255)
++|.
T Consensus 95 ~l~g~ 99 (124)
T 2kt5_A 95 QYKGV 99 (124)
T ss_dssp HHTTE
T ss_pred HcCCC
Confidence 6764
No 298
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=4.4e-12 Score=90.75 Aligned_cols=66 Identities=15% Similarity=0.214 Sum_probs=55.9
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
....+++|| |+|||. ++|+++|.++|.++ |.|.+|++. .++.++|||||+|.+.++|++|+
T Consensus 18 ~~~~~~~l~-V~nLp~-----------~~t~~~l~~~F~~~-----G~v~~~~i~--~~~~~~g~afV~f~~~~~A~~A~ 78 (109)
T 1x4a_A 18 AGNNDCRIY-VGNLPP-----------DIRTKDIEDVFYKY-----GAIRDIDLK--NRRGGPPFAFVEFEDPRDAEDAV 78 (109)
T ss_dssp CCCCSSEEE-EESCCT-----------TCCHHHHHHHHGGG-----SCEEEEEEC--CSSSSSCCEEEEESCHHHHHHHH
T ss_pred CCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEE--ECCCCCcEEEEEECCHHHHHHHH
Confidence 345567788 999999 99999999999955 999999885 45678999999999999998877
Q ss_pred -CCCCC
Q 025313 122 -GVPGV 126 (255)
Q Consensus 122 -~~~g~ 126 (255)
.|+|.
T Consensus 79 ~~l~g~ 84 (109)
T 1x4a_A 79 YGRDGY 84 (109)
T ss_dssp HHHTTC
T ss_pred HHcCCC
Confidence 66764
No 299
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.26 E-value=4.7e-12 Score=90.89 Aligned_cols=65 Identities=6% Similarity=-0.112 Sum_probs=54.3
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhC-CccccceEEeecCCccceEEeeeCCHHHHHHH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLG-NEKDAQMCIYHVSWQSNFGFCCELDDECAQEL 120 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G-~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a 120 (255)
++.....+| |+|||+ ++|+++|+++|.++ | .|..+++. ...++|||||+|.+.++|++|
T Consensus 24 ~p~~~~~l~-VgnLp~-----------~~te~dL~~~F~~~-----G~~v~~v~i~---~~~~rGfaFV~F~~~e~A~~A 83 (111)
T 2jvr_A 24 LPAKRYRIT-MKNLPE-----------GCSWQDLKDLAREN-----SLETTFSSVN---TRDFDGTGALEFPSEEILVEA 83 (111)
T ss_dssp -CCCCEEEE-EECSSC-----------CCCHHHHHHHHHHH-----TCCCSEEECS---SCSSSCCEEEEESSHHHHHHH
T ss_pred CCCCCCEEE-EECCCC-----------CCCHHHHHHHHHHh-----CCeeEEEEEE---cCCCCCEEEEEECCHHHHHHH
Confidence 455566788 999999 99999999999976 9 89888875 245899999999999999777
Q ss_pred h-CCCCC
Q 025313 121 T-GVPGV 126 (255)
Q Consensus 121 ~-~~~g~ 126 (255)
+ .|||.
T Consensus 84 i~~lng~ 90 (111)
T 2jvr_A 84 LERLNNI 90 (111)
T ss_dssp HHHTTTE
T ss_pred HHHcCCC
Confidence 7 57874
No 300
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=1.5e-12 Score=93.36 Aligned_cols=67 Identities=13% Similarity=0.208 Sum_probs=57.1
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
.....+++| |+|||. ++|+++|.++|.+ ||.|.+++++.+. +.++|||||+|.+.++|++|+
T Consensus 25 ~~~~~~~l~-V~nLp~-----------~~te~~l~~~F~~-----~G~i~~v~i~~~~-~~~kg~afV~f~~~~~A~~Ai 86 (109)
T 2err_A 25 NKSQPKRLH-VSNIPF-----------RFRDPDLRQMFGQ-----FGKILDVEIIFNE-RGSKGFGFVTFENSADADRAR 86 (109)
T ss_dssp CTTCCCEEE-EESCCT-----------TCCHHHHHHHGGG-----TCCCSCEEECCBT-TBCTTEEEEECCCSHHHHHHH
T ss_pred CCCCCCEEE-EECCCC-----------cCCHHHHHHHHHh-----cCCEEEEEEEECC-CCCceEEEEEECCHHHHHHHH
Confidence 456667788 999999 9999999999994 4999999988664 458999999999999997777
Q ss_pred C-CCCC
Q 025313 122 G-VPGV 126 (255)
Q Consensus 122 ~-~~g~ 126 (255)
+ |+|.
T Consensus 87 ~~l~g~ 92 (109)
T 2err_A 87 EKLHGT 92 (109)
T ss_dssp HHHTTC
T ss_pred HHcCCC
Confidence 6 6764
No 301
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.26 E-value=6e-12 Score=92.56 Aligned_cols=64 Identities=14% Similarity=0.110 Sum_probs=52.6
Q ss_pred CCcccccCCCCCCccEEEecCCCCCCCCHHHHH----HHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHH
Q 025313 44 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMV----DRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQE 119 (255)
Q Consensus 44 ~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~----~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~ 119 (255)
..+.+|| |||||. .+++++|+ ++|.++ |.|.+|.+. .+++++|||||+|.+.++|++
T Consensus 27 ~p~~~Lf-V~nL~~-----------~~~e~~L~~~L~~~F~~~-----G~I~~v~i~--~~~~~rG~aFV~F~~~~~A~~ 87 (127)
T 2a3j_A 27 EPSQVVL-ITNINP-----------EVPKEKLQALLYALASSQ-----GDILDIVVD--LSDDNSGKAYIVFATQESAQA 87 (127)
T ss_dssp SCCSEEE-EESCCT-----------TSCHHHHHHHHHHHHHHH-----SCEEEEEEC--CCCSSCCCEEEEESSHHHHHH
T ss_pred CCCCEEE-EeCCCC-----------CCCHHHHHHHHHHHhccC-----CCeEEEEec--cCCCcCCEEEEEECCHHHHHH
Confidence 3356688 999999 99999876 577755 999888775 578999999999999999966
Q ss_pred Hh-CCCCC
Q 025313 120 LT-GVPGV 126 (255)
Q Consensus 120 a~-~~~g~ 126 (255)
|+ .|||.
T Consensus 88 Ai~~lng~ 95 (127)
T 2a3j_A 88 FVEAFQGY 95 (127)
T ss_dssp HHHHSTTC
T ss_pred HHHHHCCC
Confidence 66 57774
No 302
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.26 E-value=4.5e-12 Score=90.88 Aligned_cols=66 Identities=12% Similarity=0.016 Sum_probs=53.7
Q ss_pred CCCCCCCCCCCcccccCCCCCCccEEEecCCCCCC-CCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCC
Q 025313 35 QMSNPWNSQIGTTLLFPLGTTKHWLVRMDKPGVGV-VTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELD 113 (255)
Q Consensus 35 ~~~~~~~~~~~s~~~~~~~nl~~~~~~~~~~~~~~-vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~ 113 (255)
.+.........+++|| |+|||+ + +|+++|.++|. .||.|.+|+|+ +++|||||+|.+
T Consensus 14 ~~k~~~~~~~p~~~l~-V~NLp~-----------~~~te~~L~~lF~-----~fG~V~~v~i~-----~~kg~aFVef~~ 71 (112)
T 1x4f_A 14 PDQKFDQKQELGRVIH-LSNLPH-----------SGYSDSAVLKLAE-----PYGKIKNYILM-----RMKSQAFIEMET 71 (112)
T ss_dssp CCCCCCCSSCCCCEEE-EESCCC-----------SSCCSHHHHTTTT-----TTSCCSEEEEE-----TTTTEEEEECSS
T ss_pred hhhhccccCCCCCEEE-EeCCCC-----------ccCCHHHHHHHHH-----hcCCEEEEEEe-----cCCCEEEEEECC
Confidence 3333344455677788 999999 9 99999999999 55999999986 358999999999
Q ss_pred HHHHHHHhC
Q 025313 114 DECAQELTG 122 (255)
Q Consensus 114 ~e~a~~a~~ 122 (255)
.++|++|+.
T Consensus 72 ~~~A~~Ai~ 80 (112)
T 1x4f_A 72 REDAMAMVD 80 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999977764
No 303
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=2.3e-12 Score=93.32 Aligned_cols=66 Identities=15% Similarity=0.121 Sum_probs=57.6
Q ss_pred CCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHHHHhC
Q 025313 44 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELTG 122 (255)
Q Consensus 44 ~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a~~ 122 (255)
...++|| |+|||. ++|+++|.++|. .||.|.+|+++.+ .+++++|||||+|.+.++|++|+.
T Consensus 25 ~~~~~l~-V~nLp~-----------~~te~~l~~~F~-----~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~ 87 (116)
T 1x4b_A 25 EQFRKLF-IGGLSF-----------ETTEESLRNYYE-----QWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 87 (116)
T ss_dssp HHHTEEE-EECCTT-----------CCCHHHHHHHHT-----SSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHT
T ss_pred CCCCEEE-EeCCCC-----------CCCHHHHHHHHH-----hcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHH
Confidence 4456788 999999 999999999999 4599999999875 568999999999999999999998
Q ss_pred CCCC
Q 025313 123 VPGV 126 (255)
Q Consensus 123 ~~g~ 126 (255)
.+|.
T Consensus 88 ~~~~ 91 (116)
T 1x4b_A 88 ARPH 91 (116)
T ss_dssp SCSE
T ss_pred hCCc
Confidence 7653
No 304
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=1.6e-11 Score=87.78 Aligned_cols=65 Identities=14% Similarity=0.182 Sum_probs=55.4
Q ss_pred CCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCC-ccccceE-E-eecCCccceEEeeeCCHHHHHH
Q 025313 43 QIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGN-EKDAQMC-I-YHVSWQSNFGFCCELDDECAQE 119 (255)
Q Consensus 43 ~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~-v~~v~i~-~-~~~~~~~g~aFV~f~~~e~a~~ 119 (255)
....+++| |+|||. ++|+++|.++|.++ |. |.+++++ . ..+|+++|||||+|.+.++|++
T Consensus 5 s~~~~~l~-V~nLp~-----------~~t~~~l~~~f~~~-----G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~ 67 (109)
T 2dis_A 5 SSGNCRLF-IGGIPK-----------MKKREEILEEIAKV-----TEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAM 67 (109)
T ss_dssp CCCSEEEE-EECCCT-----------TSCHHHHHHHHHHH-----STTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHH
T ss_pred ccCCCEEE-EeCCCC-----------cCCHHHHHHHHHHh-----cCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHH
Confidence 34567788 999999 99999999999966 98 9999987 3 4567899999999999999977
Q ss_pred HhC-CC
Q 025313 120 LTG-VP 124 (255)
Q Consensus 120 a~~-~~ 124 (255)
|+. |+
T Consensus 68 A~~~l~ 73 (109)
T 2dis_A 68 ARRKLM 73 (109)
T ss_dssp HHTTTT
T ss_pred HHHHhh
Confidence 776 53
No 305
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.25 E-value=2.2e-12 Score=88.94 Aligned_cols=60 Identities=23% Similarity=0.301 Sum_probs=49.1
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
..+...+|| |||||+ ++|+++|+++|.++ |.|.+|+++.+ ++|||||+|.++++|+++.
T Consensus 7 ~~~~~~~l~-V~~Lp~-----------~~te~~L~~~F~~~-----G~i~~v~i~~~----srGfaFV~F~~~~~A~~~~ 65 (89)
T 3d2w_A 7 HHHHGSKVF-VGRCTE-----------DMTAEELQQFFCQY-----GEVVDVFIPKP----FRAFAFVTFADDKVAQSLC 65 (89)
T ss_dssp ----CCEEE-EESCCT-----------TCCHHHHHHHHTTT-----SCEEEEECCSS----CCSEEEEEESCHHHHHHHT
T ss_pred CCCCCCEEE-EeCCCC-----------CCCHHHHHHHHhcc-----CCEEEEEEeeC----CCCEEEEEECCHHHHHHHc
Confidence 445566688 999999 99999999999955 99999998753 8999999999999998654
Q ss_pred C
Q 025313 122 G 122 (255)
Q Consensus 122 ~ 122 (255)
.
T Consensus 66 ~ 66 (89)
T 3d2w_A 66 G 66 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 306
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=2.8e-12 Score=90.93 Aligned_cols=66 Identities=20% Similarity=0.313 Sum_probs=57.2
Q ss_pred CCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHHHHhC
Q 025313 44 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELTG 122 (255)
Q Consensus 44 ~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a~~ 122 (255)
..++++| |+|||. ++|+++|.++|.++ |.|.+++++.+ .+|+++|||||+|.+.++|++|++
T Consensus 6 ~~~~~l~-V~nlp~-----------~~~~~~l~~~f~~~-----G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 68 (104)
T 1p1t_A 6 RSLRSVF-VGNIPY-----------EATEEQLKDIFSEV-----GPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 68 (104)
T ss_dssp HHHSCEE-EESCCT-----------TSCHHHHHHHHHTT-----SCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHH
T ss_pred CCccEEE-EeCCCC-----------cCCHHHHHHHHHhc-----CCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHH
Confidence 3456788 999999 99999999999954 99999998875 578999999999999999988874
Q ss_pred -CCCC
Q 025313 123 -VPGV 126 (255)
Q Consensus 123 -~~g~ 126 (255)
++|.
T Consensus 69 ~l~g~ 73 (104)
T 1p1t_A 69 NLNGR 73 (104)
T ss_dssp HSSSB
T ss_pred HhCCC
Confidence 7764
No 307
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.25 E-value=2e-12 Score=88.69 Aligned_cols=65 Identities=15% Similarity=0.216 Sum_probs=54.7
Q ss_pred CcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEee-cCC-ccceEEeeeCCHHHHHHHhC
Q 025313 45 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYH-VSW-QSNFGFCCELDDECAQELTG 122 (255)
Q Consensus 45 ~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~-~~~-~~g~aFV~f~~~e~a~~a~~ 122 (255)
.++++| |+|||. ++|+++|.++|.+ ||.|.++++..+. ++. ++|||||+|.+.++|++|+.
T Consensus 3 ~~~~l~-V~nlp~-----------~~t~~~l~~~F~~-----~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 65 (88)
T 4a8x_A 3 KPTKVH-IGRLTR-----------NVTKDHIMEIFST-----YGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALK 65 (88)
T ss_dssp CCCEEE-EECCCT-----------TCCHHHHHHHHHT-----TSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHH
T ss_pred CCCEEE-EeCCCC-----------CCCHHHHHHHHHh-----CCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHH
Confidence 456788 999999 9999999999995 4999999987744 334 89999999999999987776
Q ss_pred -CCCC
Q 025313 123 -VPGV 126 (255)
Q Consensus 123 -~~g~ 126 (255)
|+|.
T Consensus 66 ~l~g~ 70 (88)
T 4a8x_A 66 HMDGG 70 (88)
T ss_dssp HHTTC
T ss_pred HcCCC
Confidence 6774
No 308
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=2e-12 Score=88.23 Aligned_cols=66 Identities=14% Similarity=0.141 Sum_probs=56.6
Q ss_pred CCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHHHHhC
Q 025313 44 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELTG 122 (255)
Q Consensus 44 ~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a~~ 122 (255)
..++++| |+|||. ++++++|.++|.++ |.|.+++++.+ .++.++|||||+|.++++|++|+.
T Consensus 3 ~~~~~l~-v~nlp~-----------~~t~~~l~~~f~~~-----G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 65 (85)
T 1x4e_A 3 SGSSGLY-IRGLQP-----------GTTDQDLVKLCQPY-----GKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVT 65 (85)
T ss_dssp CCCCEEE-EESCCT-----------TCCHHHHHTTSTTT-----SCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHH
T ss_pred CCCcEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 4566788 999999 99999999999954 99999998874 578999999999999999977775
Q ss_pred -CCCC
Q 025313 123 -VPGV 126 (255)
Q Consensus 123 -~~g~ 126 (255)
|+|.
T Consensus 66 ~l~g~ 70 (85)
T 1x4e_A 66 ALKAS 70 (85)
T ss_dssp HHHHH
T ss_pred HhcCC
Confidence 5653
No 309
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=5.8e-12 Score=91.29 Aligned_cols=59 Identities=14% Similarity=0.138 Sum_probs=51.1
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
....+++|| |+|||+ ++|+++|+++|. .||.|.+|+++.+ +|||||+|.+.++|++|+
T Consensus 27 ~~~ps~~Lf-VgNLp~-----------~vte~dL~~lF~-----~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai 84 (119)
T 2ad9_A 27 AGVPSRVIH-IRKLPI-----------DVTEGEVISLGL-----PFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMV 84 (119)
T ss_dssp CSSCCSEEE-EESCCT-----------TCCHHHHHHHHT-----TTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHH
T ss_pred cCCCCCEEE-EeCCCC-----------CCCHHHHHHHHH-----hcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHH
Confidence 445567788 999999 999999999999 5599999998743 899999999999997777
Q ss_pred C
Q 025313 122 G 122 (255)
Q Consensus 122 ~ 122 (255)
+
T Consensus 85 ~ 85 (119)
T 2ad9_A 85 N 85 (119)
T ss_dssp H
T ss_pred H
Confidence 5
No 310
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.24 E-value=1.9e-12 Score=86.50 Aligned_cols=59 Identities=17% Similarity=0.305 Sum_probs=51.8
Q ss_pred cccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHHHHhCC
Q 025313 48 LLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELTGV 123 (255)
Q Consensus 48 ~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a~~~ 123 (255)
++| |+|||. ++|+++|.++|.++ |.|.++++..+ .+|+++|||||+|.++++|++|++.
T Consensus 2 ~l~-v~nlp~-----------~~t~~~l~~~F~~~-----G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 61 (77)
T 1uaw_A 2 KMF-IGGLSW-----------QTTQEGLREYFGQF-----GEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 61 (77)
T ss_dssp CEE-EESCCS-----------SCCSHHHHHHHTTT-----SCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHT
T ss_pred EEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHh
Confidence 466 889988 99999999999955 99999998875 4789999999999999999887754
No 311
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=2.9e-12 Score=90.39 Aligned_cols=65 Identities=11% Similarity=-0.022 Sum_probs=54.6
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
....+++|| |+|||. ++|+++|+++|.+ ||.| +++.+.+++++|||||+|.+.++|++|+
T Consensus 11 ~~~~~~~l~-V~nLp~-----------~~t~~~l~~~F~~-----~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~ 70 (101)
T 2fc9_A 11 WSGESKTLV-LSNLSY-----------SATEETLQEVFEK-----ATFI---KVPQNQNGKSKGYAFIEFASFEDAKEAL 70 (101)
T ss_dssp CSCCCSEEE-EESCCT-----------TCCHHHHHHHCSS-----CSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHH
T ss_pred CCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHh-----CCEE---EEEECCCCCEeeEEEEEECCHHHHHHHH
Confidence 455677888 999999 9999999999994 4877 4555578999999999999999998887
Q ss_pred C-CCCC
Q 025313 122 G-VPGV 126 (255)
Q Consensus 122 ~-~~g~ 126 (255)
. |+|.
T Consensus 71 ~~l~g~ 76 (101)
T 2fc9_A 71 NSCNKR 76 (101)
T ss_dssp HHTSSE
T ss_pred HHhCCC
Confidence 6 7774
No 312
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.24 E-value=4.1e-12 Score=96.93 Aligned_cols=65 Identities=12% Similarity=0.237 Sum_probs=55.1
Q ss_pred CcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhC--CccccceEEe-ecCCccceEEeeeCCHHHHHHHh
Q 025313 45 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLG--NEKDAQMCIY-HVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 45 ~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G--~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
..++|| |||||+ ++|+++|.++|.++ | .|.+|+++.+ .+|+++|||||+|.+.++|++|+
T Consensus 54 ~~~~lf-VgnLp~-----------~~te~~L~~~F~~~-----G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai 116 (156)
T 3n9u_C 54 RRAAVY-VGSFSW-----------WTTDQQLIQVIRSI-----GVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLL 116 (156)
T ss_dssp --CEEE-EECCCT-----------TCCHHHHHHHHHHT-----TCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHH
T ss_pred CCCEEE-EeCCCC-----------CCCHHHHHHHHHHH-----CCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHH
Confidence 346778 999999 99999999999955 9 9999999875 58999999999999999997776
Q ss_pred C-CCCC
Q 025313 122 G-VPGV 126 (255)
Q Consensus 122 ~-~~g~ 126 (255)
. |+|.
T Consensus 117 ~~lng~ 122 (156)
T 3n9u_C 117 ELLPGK 122 (156)
T ss_dssp HHSTTC
T ss_pred HHcCCC
Confidence 5 4764
No 313
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.24 E-value=3.9e-12 Score=93.46 Aligned_cols=68 Identities=15% Similarity=0.239 Sum_probs=58.5
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHHHH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQEL 120 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a 120 (255)
....+++|| |+|||. ++|+++|.++|.++ |.|.+|+++.+ .++.++|||||+|.+.++|++|
T Consensus 18 ~~~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A 80 (126)
T 3ex7_B 18 RSVEGWILF-VTGVHE-----------EATEEDIHDKFAEY-----GEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAA 80 (126)
T ss_dssp CCSSSEEEE-EESCCT-----------TCCHHHHHHHHHTT-----SCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHH
T ss_pred CCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEEecCCCCccceEEEEEECCHHHHHHH
Confidence 445567788 999999 99999999999954 99999998875 4899999999999999999888
Q ss_pred hC-CCCC
Q 025313 121 TG-VPGV 126 (255)
Q Consensus 121 ~~-~~g~ 126 (255)
++ |+|.
T Consensus 81 ~~~l~g~ 87 (126)
T 3ex7_B 81 MEGLNGQ 87 (126)
T ss_dssp HHHHTTC
T ss_pred HHHhCCC
Confidence 74 6774
No 314
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.22 E-value=1.3e-11 Score=86.54 Aligned_cols=57 Identities=11% Similarity=0.001 Sum_probs=49.4
Q ss_pred CCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhC
Q 025313 44 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG 122 (255)
Q Consensus 44 ~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~ 122 (255)
+.+++++ |+|||. ++|+++|.++|. .||.|.+++++. .||||||+|.+.++|++|+.
T Consensus 19 ~ps~~l~-V~NLp~-----------~~te~~L~~lF~-----~fG~V~~v~i~~-----~kg~AFVef~~~~~A~~Av~ 75 (100)
T 3r27_A 19 PASPVVH-IRGLID-----------GVVEADLVEALQ-----EFGPISYVVVMP-----KKRQALVEFEDVLGACNAVN 75 (100)
T ss_dssp CCCSEEE-EESCCT-----------TCCHHHHHHHHG-----GGSCEEEEEEET-----TTTEEEEEESSHHHHHHHHH
T ss_pred CCCcEEE-EeCCCC-----------CCCHHHHHHHHh-----ccCCEEEEEEEc-----CCCEEEEEECCHHHHHHHHH
Confidence 4456688 999999 999999999999 559999999863 58999999999999977764
No 315
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=1.9e-11 Score=85.58 Aligned_cols=64 Identities=11% Similarity=0.123 Sum_probs=53.0
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
....++++| |+|||. ++|+++|.++|.++ |.|. ++++ +++++|||||+|.+.++|++|+
T Consensus 15 ~~~~~~~l~-V~nL~~-----------~~t~~~l~~~F~~~-----G~v~-~~~~---~~~~~g~afV~f~~~~~a~~A~ 73 (97)
T 2e5j_A 15 GAPLAADVY-VGNLPR-----------DARVSDLKRALREL-----GSVP-LRLT---WQGPRRRAFLHYPDSAAAQQAV 73 (97)
T ss_dssp SSCCCCEEE-EECCCT-----------TCCHHHHHHHHHHT-----TCCC-SEEE---EETTTTEEEEECSSHHHHHHHH
T ss_pred CCCCCCEEE-EeCCCC-----------cCcHHHHHHHHHhc-----CCEE-EEEE---cCCCCcEEEEEECCHHHHHHHH
Confidence 445567788 999999 99999999999955 9996 6655 4588999999999999997776
Q ss_pred -CCCCC
Q 025313 122 -GVPGV 126 (255)
Q Consensus 122 -~~~g~ 126 (255)
.|+|.
T Consensus 74 ~~l~g~ 79 (97)
T 2e5j_A 74 SCLQGL 79 (97)
T ss_dssp HHHTTC
T ss_pred HHhCCC
Confidence 55764
No 316
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.21 E-value=1.5e-11 Score=93.95 Aligned_cols=67 Identities=15% Similarity=0.110 Sum_probs=58.0
Q ss_pred CCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHHHHh
Q 025313 43 QIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 43 ~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
.....++| |+|||. ++|+++|.++|.++ |.|.+|+++.+ .+|+++|||||+|.+.++|++|+
T Consensus 67 ~~~~~~l~-v~nl~~-----------~~~~~~l~~~F~~~-----G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 129 (158)
T 2kn4_A 67 VEGMTSLK-VDNLTY-----------RTSPDTLRRVFEKY-----GRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAM 129 (158)
T ss_dssp CCBCCEEE-EESCCT-----------TCCHHHHHHHHHHH-----SCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHH
T ss_pred CCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEeecCCCCccceEEEEEECCHHHHHHHH
Confidence 34566777 999999 99999999999966 99999998875 58999999999999999997777
Q ss_pred C-CCCC
Q 025313 122 G-VPGV 126 (255)
Q Consensus 122 ~-~~g~ 126 (255)
. |+|.
T Consensus 130 ~~l~g~ 135 (158)
T 2kn4_A 130 DAMDGA 135 (158)
T ss_dssp HHSTTE
T ss_pred HHhCCC
Confidence 4 7874
No 317
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.21 E-value=7.8e-12 Score=95.33 Aligned_cols=68 Identities=16% Similarity=0.199 Sum_probs=58.3
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHHHH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQEL 120 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a 120 (255)
....+++|| |+|||. ++|+++|.++|.++ |.|.+|+|+.+ .++.++|||||+|.+.++|++|
T Consensus 35 ~~~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A 97 (156)
T 1h2v_Z 35 LLKKSCTLY-VGNLSF-----------YTTEEQIYELFSKS-----GDIKKIIMGLDKMKKTACGFCFVEYYSRADAENA 97 (156)
T ss_dssp TTTTCCEEE-EESCCT-----------TCCHHHHHHHHGGG-----SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH
T ss_pred cCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEEecCCCCccceEEEEEECCHHHHHHH
Confidence 334567788 999999 99999999999954 99999999875 4688999999999999999777
Q ss_pred hC-CCCC
Q 025313 121 TG-VPGV 126 (255)
Q Consensus 121 ~~-~~g~ 126 (255)
+. |+|.
T Consensus 98 i~~l~g~ 104 (156)
T 1h2v_Z 98 MRYINGT 104 (156)
T ss_dssp HHHTTTS
T ss_pred HHHhCCC
Confidence 76 7775
No 318
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.21 E-value=5.5e-12 Score=102.28 Aligned_cols=65 Identities=12% Similarity=0.207 Sum_probs=55.8
Q ss_pred CcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhC--CccccceEEe-ecCCccceEEeeeCCHHHHHHHh
Q 025313 45 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLG--NEKDAQMCIY-HVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 45 ~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G--~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
..++|| |+||++ ++|+++|+++|.+ || .|.+|+|+.+ .+++++|||||+|.+.++|++|+
T Consensus 67 ~~~~lf-VgnL~~-----------~~te~~L~~~F~~-----~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai 129 (229)
T 3q2s_C 67 KRIALY-IGNLTW-----------WTTDEDLTEAVHS-----LGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLM 129 (229)
T ss_dssp --CEEE-EESCCT-----------TCCHHHHHHHHHT-----TTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHH
T ss_pred CccEEE-EeCCCC-----------CCCHHHHHHHHHH-----HCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHH
Confidence 445677 999999 9999999999994 49 9999999885 58999999999999999998887
Q ss_pred C-CCCC
Q 025313 122 G-VPGV 126 (255)
Q Consensus 122 ~-~~g~ 126 (255)
+ |||.
T Consensus 130 ~~lng~ 135 (229)
T 3q2s_C 130 DLLPKR 135 (229)
T ss_dssp TTSTTS
T ss_pred HHcCCC
Confidence 6 6764
No 319
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.20 E-value=7.8e-12 Score=89.42 Aligned_cols=63 Identities=19% Similarity=0.296 Sum_probs=53.3
Q ss_pred CCCCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHH
Q 025313 40 WNSQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQE 119 (255)
Q Consensus 40 ~~~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~ 119 (255)
......++++| |+|||. ++|+++|.++|.++ |.|.++++. +|||||+|.+.++|++
T Consensus 25 ~~~~~~~~~l~-V~nLp~-----------~~t~~~L~~~F~~~-----G~i~~v~i~-------kg~afV~f~~~~~A~~ 80 (108)
T 2jvo_A 25 QEGELSNTRLF-VRPFPL-----------DVQESELNEIFGPF-----GPMKEVKIL-------NGFAFVEFEEAESAAK 80 (108)
T ss_dssp ---CCSCSEEE-ECSSCT-----------TCCHHHHHHHHTTT-----SCCCEEEEE-------TTEEEEECSSHHHHHH
T ss_pred cCCCCCCCEEE-EECCCC-----------CCCHHHHHHHHHhc-----CCEEEEEEE-------CCEEEEEECCHHHHHH
Confidence 34567778888 999999 99999999999954 999999987 8999999999999977
Q ss_pred HhC-CCCC
Q 025313 120 LTG-VPGV 126 (255)
Q Consensus 120 a~~-~~g~ 126 (255)
|+. |+|.
T Consensus 81 Ai~~l~g~ 88 (108)
T 2jvo_A 81 AIEEVHGK 88 (108)
T ss_dssp HHHHHTTC
T ss_pred HHHHcCCC
Confidence 775 6775
No 320
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.20 E-value=1.2e-11 Score=87.71 Aligned_cols=59 Identities=12% Similarity=0.019 Sum_probs=50.2
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
....+++|| |+|||. ++|+++|.++|. .||.|.+|+++. .||||||+|.+.++|++|+
T Consensus 11 ~~~p~~~l~-V~nLp~-----------~~te~~L~~~F~-----~fG~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai 68 (104)
T 1wex_A 11 KVSVSPVVH-VRGLCE-----------SVVEADLVEALE-----KFGTICYVMMMP-----FKRQALVEFENIDSAKECV 68 (104)
T ss_dssp CCCCCSEEE-EESCCS-----------SCCHHHHHHHHT-----TTSCEEEEEEET-----TTTEEEEEESSHHHHHHHH
T ss_pred cCCCCCEEE-EeCCCC-----------CCCHHHHHHHHH-----hCCCEEEEEEEC-----CCCEEEEEECCHHHHHHHH
Confidence 334567788 999999 999999999999 459999998863 3899999999999997776
Q ss_pred C
Q 025313 122 G 122 (255)
Q Consensus 122 ~ 122 (255)
+
T Consensus 69 ~ 69 (104)
T 1wex_A 69 T 69 (104)
T ss_dssp H
T ss_pred H
Confidence 5
No 321
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.20 E-value=1.2e-11 Score=88.46 Aligned_cols=62 Identities=8% Similarity=-0.033 Sum_probs=52.6
Q ss_pred CCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhC
Q 025313 43 QIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG 122 (255)
Q Consensus 43 ~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~ 122 (255)
......|| |+|||+ ++|+++|.++|.++ |.|.+|++..+ |||||+|.+.++|++|++
T Consensus 12 ~~~~~~l~-V~nLp~-----------~~t~~~l~~~F~~~-----G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~ 68 (108)
T 1x4c_A 12 RRSENRVV-VSGLPP-----------SGSWQDLKDHMREA-----GDVCYADVYRD------GTGVVEFVRKEDMTYAVR 68 (108)
T ss_dssp CSCCCEEE-EESCCS-----------SCCHHHHHHHHGGG-----SCEEEEEEETT------TEEEEEESSHHHHHHHHH
T ss_pred CCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCEeEEEEecC------CEEEEEECCHHHHHHHHH
Confidence 34566788 999999 99999999999955 99999998743 999999999999977776
Q ss_pred -CCCCc
Q 025313 123 -VPGVL 127 (255)
Q Consensus 123 -~~g~~ 127 (255)
|||..
T Consensus 69 ~l~g~~ 74 (108)
T 1x4c_A 69 KLDNTK 74 (108)
T ss_dssp HSSSEE
T ss_pred HHCcCC
Confidence 78753
No 322
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.19 E-value=5.2e-12 Score=87.09 Aligned_cols=62 Identities=13% Similarity=0.269 Sum_probs=52.2
Q ss_pred ccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHH-HHHhCCC
Q 025313 47 TLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECA-QELTGVP 124 (255)
Q Consensus 47 ~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a-~~a~~~~ 124 (255)
+++| |+|||. ++++++|.++|.++ |.|.+++++.+ .+|+++|||||+|.+.+ | +++..|+
T Consensus 2 ~~l~-V~nLp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~ 63 (90)
T 2ki2_A 2 RNIY-VGNLVY-----------SATSEQVKELFSQF-----GKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLD 63 (90)
T ss_dssp EEEE-EEEECT-----------TSSHHHHTTTHHHH-----TCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSC
T ss_pred cEEE-ECCCCC-----------CCCHHHHHHHHHhc-----CCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhC
Confidence 3566 888888 89999999999966 99999998874 46899999999999999 7 5555677
Q ss_pred CC
Q 025313 125 GV 126 (255)
Q Consensus 125 g~ 126 (255)
|.
T Consensus 64 g~ 65 (90)
T 2ki2_A 64 NT 65 (90)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 323
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.19 E-value=1.9e-11 Score=83.23 Aligned_cols=63 Identities=13% Similarity=0.212 Sum_probs=53.1
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
.....+++| |+|||. ++|+++|.++|.++ |.|.++++.. ++|||||+|.+.++|++|+
T Consensus 8 ~~~~~~~l~-V~~l~~-----------~~t~~~l~~~f~~~-----G~i~~~~~~~-----~kg~afV~f~~~~~A~~a~ 65 (85)
T 2ytc_A 8 EDKTITTLY-VGGLGD-----------TITETDLRNHFYQF-----GEIRTITVVQ-----RQQCAFIQFATRQAAEVAA 65 (85)
T ss_dssp SCSSCCCEE-EECCTT-----------TSCHHHHHHHHHTT-----SCEEEEEEEG-----GGTEEEEEESSHHHHHHHH
T ss_pred CCCCccEEE-EcCCCC-----------CCCHHHHHHHHHhC-----CCEeEEEEEC-----CCCEEEEEECCHHHHHHHH
Confidence 445567788 999999 99999999999955 9999999874 4899999999999997776
Q ss_pred C-C-CCC
Q 025313 122 G-V-PGV 126 (255)
Q Consensus 122 ~-~-~g~ 126 (255)
. | +|.
T Consensus 66 ~~l~~~~ 72 (85)
T 2ytc_A 66 EKSFNKL 72 (85)
T ss_dssp HTTTTTC
T ss_pred HHhcCCe
Confidence 5 6 654
No 324
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.18 E-value=1.6e-11 Score=95.58 Aligned_cols=65 Identities=15% Similarity=0.067 Sum_probs=56.8
Q ss_pred CcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhC-C
Q 025313 45 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG-V 123 (255)
Q Consensus 45 ~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~-~ 123 (255)
.+++|| |+|||. ++|+++|.++|.++ |.|.+|.+..+.++.++|||||+|.+.++|++|++ +
T Consensus 87 ~~~~l~-V~nLp~-----------~~te~~L~~~F~~~-----G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~l 149 (177)
T 2f3j_A 87 TGAKLL-VSNLDF-----------GVSDADIQELFAEF-----GTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQY 149 (177)
T ss_dssp TCEEEE-EECCCS-----------CCCHHHHHHHHHHT-----SCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHS
T ss_pred CCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHh
Confidence 345677 889988 99999999999955 99999999887789999999999999999977776 7
Q ss_pred CCC
Q 025313 124 PGV 126 (255)
Q Consensus 124 ~g~ 126 (255)
+|.
T Consensus 150 ng~ 152 (177)
T 2f3j_A 150 KGV 152 (177)
T ss_dssp TTC
T ss_pred CCC
Confidence 764
No 325
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=7.6e-12 Score=90.32 Aligned_cols=61 Identities=11% Similarity=0.169 Sum_probs=50.9
Q ss_pred CCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEE-eec---CCccceEEeeeCCHHHHHH
Q 025313 44 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHV---SWQSNFGFCCELDDECAQE 119 (255)
Q Consensus 44 ~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~-~~~---~~~~g~aFV~f~~~e~a~~ 119 (255)
..+++|| |+|||+ ++|+++|.++|.++ |.|. ++++. ..+ |+++|||||+|.++++|++
T Consensus 6 ~~~~~lf-VgnLp~-----------~~te~~L~~~F~~~-----G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~ 67 (114)
T 2dnl_A 6 SGSRKVF-VGGLPP-----------DIDEDEITASFRRF-----GPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQA 67 (114)
T ss_dssp SCCCCEE-EECCCT-----------TCCHHHHHHHTTTT-----CCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHH
T ss_pred CCCCEEE-EcCCCC-----------CCCHHHHHHHHHhc-----CCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHH
Confidence 4567788 999999 99999999999955 9998 66554 334 7999999999999999977
Q ss_pred HhC
Q 025313 120 LTG 122 (255)
Q Consensus 120 a~~ 122 (255)
|++
T Consensus 68 Ai~ 70 (114)
T 2dnl_A 68 LID 70 (114)
T ss_dssp HHH
T ss_pred HHH
Confidence 663
No 326
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.17 E-value=4.7e-12 Score=90.98 Aligned_cols=68 Identities=12% Similarity=0.154 Sum_probs=56.1
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHH---HHHHHHHHHhhCCccccceEEee-c---CCccceEEeeeCCH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMV---DRYAQILTKVLGNEKDAQMCIYH-V---SWQSNFGFCCELDD 114 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~---~~F~~~~~~~~G~v~~v~i~~~~-~---~~~~g~aFV~f~~~ 114 (255)
......++| |+|||+ ++++++|. ++|.++ |.|.+|+++.+. + ++++|||||+|.++
T Consensus 11 r~~~~~~l~-V~nLp~-----------~~~~~~l~~~~~~F~~~-----G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~ 73 (111)
T 2cpi_A 11 RVVQKNLVF-VVGLSQ-----------RLADPEVLKRPEYFGKF-----GKIHKVVINNSTSYAGSQGPSASAYVTYIRS 73 (111)
T ss_dssp CCCCSSCEE-EEEECT-----------TTCCHHHHHSTTTTTTT-----SCEEEEEEECCSSCCSSSCCCEEEEEEESSH
T ss_pred cccCCCEEE-EECCCC-----------CCCHHHHHHHHHHhhcc-----CCEEEEEEecCCCcCccCCCCeEEEEEECcH
Confidence 455677788 999999 99999999 999955 999999987643 2 35679999999999
Q ss_pred HHHHHHhC-CCCC
Q 025313 115 ECAQELTG-VPGV 126 (255)
Q Consensus 115 e~a~~a~~-~~g~ 126 (255)
++|++|++ |||.
T Consensus 74 ~~A~~Ai~~lng~ 86 (111)
T 2cpi_A 74 EDALRAIQCVNNV 86 (111)
T ss_dssp HHHHHHHHHHTTE
T ss_pred HHHHHHHHHhCCC
Confidence 99977776 5775
No 327
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.17 E-value=1.9e-11 Score=85.54 Aligned_cols=63 Identities=16% Similarity=0.190 Sum_probs=52.9
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
....+++|| |+|||. ++|+++|.++|.++ |.|.++++... +|||||+|.+.++|++|+
T Consensus 13 ~~~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~ 70 (97)
T 1why_A 13 KANPTTRLW-VGGLGP-----------NTSLAALAREFDRF-----GSIRTIDHVKG-----DSFAYIQYESLDAAQAAC 70 (97)
T ss_dssp CCCCCSCEE-EECCCS-----------SCCHHHHHHHHHTT-----SCEEEEEECSS-----SCCEEEEESSHHHHHHHH
T ss_pred CCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeeEEEEeCC-----CCEEEEEECCHHHHHHHH
Confidence 445567788 999999 99999999999955 99999988632 899999999999997777
Q ss_pred C-CCCC
Q 025313 122 G-VPGV 126 (255)
Q Consensus 122 ~-~~g~ 126 (255)
+ |+|.
T Consensus 71 ~~l~g~ 76 (97)
T 1why_A 71 AKMRGF 76 (97)
T ss_dssp HHHTTC
T ss_pred HHHCCC
Confidence 6 6764
No 328
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=2.4e-11 Score=83.76 Aligned_cols=61 Identities=15% Similarity=0.256 Sum_probs=53.2
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
.+..++++| |+|||. ++|+++|.++|.++ |.|.+++++ ++||||+|.+.++|++|+
T Consensus 5 ~~~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G~v~~~~~~-------~~~afV~f~~~~~a~~A~ 60 (90)
T 2dnp_A 5 SSGNTWKIF-VGNVSA-----------ACTSQELRSLFERR-----GRVIECDVV-------KDYAFVHMEKEADAKAAI 60 (90)
T ss_dssp SSCCSCCEE-EESCCT-----------TCCHHHHHHHHHHH-----SCEEEEEEC-------SSCEEEEESCHHHHHHHH
T ss_pred CCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHcC-----CCEEEEEEE-------CCEEEEEECCHHHHHHHH
Confidence 456677788 999999 99999999999966 999999987 679999999999997777
Q ss_pred C-CCCC
Q 025313 122 G-VPGV 126 (255)
Q Consensus 122 ~-~~g~ 126 (255)
. |+|.
T Consensus 61 ~~l~g~ 66 (90)
T 2dnp_A 61 AQLNGK 66 (90)
T ss_dssp HHHTTC
T ss_pred HHhCCC
Confidence 6 6764
No 329
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=3.8e-11 Score=83.47 Aligned_cols=65 Identities=12% Similarity=0.074 Sum_probs=53.2
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
....++++| |+|||+ ++|+++|.++|.++ |.|.+| +....+++ ||||+|.+.++|++|+
T Consensus 4 ~~~~~~~l~-V~nl~~-----------~~t~~~l~~~F~~~-----G~v~~v-~~~~~~g~---~afV~f~~~~~a~~ai 62 (94)
T 2e5g_A 4 GSSGLRSVF-VSGFPR-----------GVDSAQLSEYFLAF-----GPVASV-VMDKDKGV---FAIVEMGDVGAREAVL 62 (94)
T ss_dssp CCTTCCEEE-EECCCT-----------TCCHHHHHHHGGGT-----SCEEEE-EECSSSCC---EEEEEESSHHHHHHHH
T ss_pred ccCCCCEEE-EECCCC-----------CCCHHHHHHHHHhc-----CCeEEE-EEcCCCCc---EEEEEECCHHHHHHHH
Confidence 345567788 999999 99999999999955 999987 43333444 9999999999999999
Q ss_pred CCCCCc
Q 025313 122 GVPGVL 127 (255)
Q Consensus 122 ~~~g~~ 127 (255)
.|+|..
T Consensus 63 ~l~g~~ 68 (94)
T 2e5g_A 63 SQSQHS 68 (94)
T ss_dssp TCSCCE
T ss_pred hcCCeE
Confidence 888753
No 330
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=2.5e-11 Score=82.81 Aligned_cols=73 Identities=16% Similarity=0.261 Sum_probs=62.4
Q ss_pred CccceEEEcCCCCC------CCH---HHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC
Q 025313 164 IKTKKLFVTGLSFY------TSE---KTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIIN 234 (255)
Q Consensus 164 ~~~~~l~V~nLp~~------~t~---~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~ 234 (255)
++..||+|.-++.. .++ .+|.+.|++||.|..+++..|+ +||+|.+.++|.+|+. |||..++
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 45788999888743 232 5688999999999999999884 9999999999999997 9999999
Q ss_pred CEEEEEEEecC
Q 025313 235 GWMIVVDVAKT 245 (255)
Q Consensus 235 g~~l~V~~a~~ 245 (255)
||.|+|++..+
T Consensus 84 Gr~L~V~~k~~ 94 (95)
T 1ufw_A 84 GRAVKISGPSS 94 (95)
T ss_dssp TEEEEEECCCC
T ss_pred CeEEEEeccCC
Confidence 99999998653
No 331
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.17 E-value=1.2e-11 Score=87.13 Aligned_cols=68 Identities=12% Similarity=0.094 Sum_probs=52.9
Q ss_pred cccccCCCCCCccEEEecCCCCC--CCCHHHHHHHHHHHHHHhhCCccccceEEee-cCCccceEEeeeCCHHHHHHHh-
Q 025313 46 TTLLFPLGTTKHWLVRMDKPGVG--VVTKAQMVDRYAQILTKVLGNEKDAQMCIYH-VSWQSNFGFCCELDDECAQELT- 121 (255)
Q Consensus 46 s~~~~~~~nl~~~~~~~~~~~~~--~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~-~~~~~g~aFV~f~~~e~a~~a~- 121 (255)
++++| |+|||. .... ++++++|.++|.++ |.|.+|+|+.+. +|+++|||||+|.++++|++|+
T Consensus 6 ~~~vf-V~nLp~-------v~~~~~~~~~~~L~~~F~~~-----G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~ 72 (100)
T 3ns6_A 6 DQYIV-VNGAPV-------IPSAKVPVLKKALTSLFSKA-----GKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIK 72 (100)
T ss_dssp GGEEE-EESCCC-------CBGGGHHHHHHHHHHHHHTT-----SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHH
T ss_pred CcEEE-EeCCCc-------CChHHHHHHHHHHHHHHHhc-----CCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHH
Confidence 34566 777765 1111 48899999999954 999999988755 5999999999999999997777
Q ss_pred CCCCC
Q 025313 122 GVPGV 126 (255)
Q Consensus 122 ~~~g~ 126 (255)
.|||.
T Consensus 73 ~lng~ 77 (100)
T 3ns6_A 73 SFHGK 77 (100)
T ss_dssp HHTTC
T ss_pred HhCCc
Confidence 46764
No 332
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.17 E-value=2.6e-11 Score=85.80 Aligned_cols=59 Identities=15% Similarity=0.254 Sum_probs=51.7
Q ss_pred CCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhC-
Q 025313 44 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG- 122 (255)
Q Consensus 44 ~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~- 122 (255)
..+++|| |+|||. ++|+++|.++|.++ |.|.+++++ ++||||+|.+.++|++|+.
T Consensus 9 ~~~~~l~-V~nl~~-----------~~t~~~l~~~F~~~-----G~i~~v~~~-------~~~afV~f~~~~~a~~A~~~ 64 (103)
T 2dgu_A 9 AKVKVLF-VRNLAN-----------TVTEEILEKAFSQF-----GKLERVKKL-------KDYAFIHFDERDGAVKAMEE 64 (103)
T ss_dssp CCCCCEE-EECCCT-----------TCCHHHHHHHHHHH-----SCEEEEEEC-------SSCEEEEESSHHHHHHHHHH
T ss_pred CCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCEEEEEEE-------CCEEEEEeCCHHHHHHHHHH
Confidence 4457788 999999 99999999999966 999999887 7899999999999977776
Q ss_pred CCCC
Q 025313 123 VPGV 126 (255)
Q Consensus 123 ~~g~ 126 (255)
|+|.
T Consensus 65 l~g~ 68 (103)
T 2dgu_A 65 MNGK 68 (103)
T ss_dssp HTTE
T ss_pred HCCC
Confidence 6764
No 333
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.16 E-value=3.5e-11 Score=82.93 Aligned_cols=61 Identities=20% Similarity=0.359 Sum_probs=52.7
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
.....+++| |+|||. ++|+++|.++|.++ |.|.+++++ +|||||+|.+.++|++|+
T Consensus 4 ~~~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G~i~~v~~~-------~g~afV~f~~~~~A~~A~ 59 (90)
T 2dnq_A 4 GSSGMVKLF-IGNLPR-----------EATEQEIRSLFEQY-----GKVLECDII-------KNYGFVHIEDKTAAEDAI 59 (90)
T ss_dssp CSSCCEEEE-EESCCS-----------SCCHHHHHHHHHTS-----SCEEEEEEE-------TTEEEEEESSHHHHHHHH
T ss_pred CCCCCeEEE-EeCCCC-----------CCCHHHHHHHHHhC-----CCEEEEEEE-------CCEEEEEECCHHHHHHHH
Confidence 445667788 999999 99999999999954 999999987 899999999999997777
Q ss_pred -CCCCC
Q 025313 122 -GVPGV 126 (255)
Q Consensus 122 -~~~g~ 126 (255)
.++|.
T Consensus 60 ~~l~g~ 65 (90)
T 2dnq_A 60 RNLHHY 65 (90)
T ss_dssp HHHTTC
T ss_pred HHhcCC
Confidence 46764
No 334
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=2e-11 Score=87.57 Aligned_cols=59 Identities=17% Similarity=0.162 Sum_probs=50.1
Q ss_pred cccccCC--CCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh-C
Q 025313 46 TTLLFPL--GTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT-G 122 (255)
Q Consensus 46 s~~~~~~--~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~-~ 122 (255)
++.|| | |||++ ++|+++|+++|.++ |.|.+|.|.. .+|||||+|.+.++|++|+ +
T Consensus 25 t~~L~-V~Ng~L~~-----------~~te~~L~~~F~~f-----G~v~~v~i~~-----~rgfaFV~f~~~~~A~~Ai~~ 82 (114)
T 2cq2_A 25 TQSLV-VANGGLGN-----------GVSRNQLLPVLEKC-----GLVDALLMPP-----NKPYSFARYRTTEESKRAYVT 82 (114)
T ss_dssp CSEEE-EETCTGGG-----------TCCHHHHHHHHHHH-----SCEEEEECCT-----TCSCEEEEESSHHHHHHHHHH
T ss_pred CCEEE-EECCCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHH
Confidence 45677 9 88999 99999999999966 9999988752 3899999999999996666 4
Q ss_pred CCCC
Q 025313 123 VPGV 126 (255)
Q Consensus 123 ~~g~ 126 (255)
|||.
T Consensus 83 lnG~ 86 (114)
T 2cq2_A 83 LNGK 86 (114)
T ss_dssp TTTC
T ss_pred hCCC
Confidence 7875
No 335
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.78 E-value=3e-12 Score=92.74 Aligned_cols=67 Identities=16% Similarity=0.102 Sum_probs=57.8
Q ss_pred CCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccc--------cceEEe-ecCCccceEEeeeCC
Q 025313 43 QIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKD--------AQMCIY-HVSWQSNFGFCCELD 113 (255)
Q Consensus 43 ~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~--------v~i~~~-~~~~~~g~aFV~f~~ 113 (255)
...++++| |+|||. ++|+++|.++|.++ |.|.+ |+++.+ .+++++|||||+|.+
T Consensus 4 ~~~~~~l~-V~nLp~-----------~~t~~~l~~~F~~~-----G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~ 66 (116)
T 2lcw_A 4 NSDNNTIF-VQGLGE-----------NVTIESVADYFKQI-----GIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDD 66 (116)
Confidence 34566788 999999 99999999999966 99998 888775 678999999999999
Q ss_pred HHHHHHHhC-CCCC
Q 025313 114 DECAQELTG-VPGV 126 (255)
Q Consensus 114 ~e~a~~a~~-~~g~ 126 (255)
.++|++|+. |+|.
T Consensus 67 ~~~A~~Ai~~l~g~ 80 (116)
T 2lcw_A 67 PPSAKAAIDWFDGK 80 (116)
Confidence 999988876 6774
No 336
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.15 E-value=2.6e-11 Score=85.45 Aligned_cols=62 Identities=16% Similarity=0.149 Sum_probs=52.7
Q ss_pred CCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh-
Q 025313 43 QIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT- 121 (255)
Q Consensus 43 ~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~- 121 (255)
+..++++| |+|||. ++|+++|.++|.++ |.|.++++. +++|||||+|.+.++|++|+
T Consensus 24 ~~~~~~l~-V~nlp~-----------~~~~~~l~~~f~~~-----G~i~~~~~~-----~~~g~afV~f~~~~~A~~Ai~ 81 (101)
T 2la4_A 24 PPRVTTAY-IGNIPH-----------FATEADLIPLFQNF-----GFILDFKHY-----PEKGCCFIKYDTHEQAAVCIV 81 (101)
T ss_dssp CSSCCEEE-EESCCT-----------TCCHHHHHHHHHTT-----SCCSEEEEE-----TTTTEEEEECSSHHHHHHHHH
T ss_pred CCCCCEEE-EcCCCc-----------ccCHHHHHHHHHhC-----CCEEEEEEe-----cCCCEEEEEECCHHHHHHHHH
Confidence 34457788 999999 99999999999954 999999886 56899999999999997776
Q ss_pred CCCCC
Q 025313 122 GVPGV 126 (255)
Q Consensus 122 ~~~g~ 126 (255)
.|+|.
T Consensus 82 ~l~g~ 86 (101)
T 2la4_A 82 ALANF 86 (101)
T ss_dssp HHTTC
T ss_pred HhCCC
Confidence 45764
No 337
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.15 E-value=9.8e-11 Score=94.39 Aligned_cols=67 Identities=21% Similarity=0.330 Sum_probs=60.8
Q ss_pred CHHHHHHHHhcCCCEEEEEEEecC----CCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEecC
Q 025313 179 SEKTLRAAFEGFGELVEVKIIMDK----ISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKT 245 (255)
Q Consensus 179 t~~~L~~~F~~fG~i~~v~i~~d~----~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~~a~~ 245 (255)
.+++|++.|++||.|.++.|.++. .+|+++|++||+|.+.++|.+|++.|||..++||.|.+.+...
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 568899999999999999998554 3458999999999999999999999999999999999999763
No 338
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.14 E-value=1.1e-11 Score=86.59 Aligned_cols=64 Identities=6% Similarity=0.002 Sum_probs=53.8
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
....++++| |+|||. ++|+++|.++|.++ |.|..+ ..++.++|||||+|.+.++|++|+
T Consensus 12 ~~~~~~~l~-V~nL~~-----------~~t~~~l~~~F~~~-----g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~ 70 (96)
T 1fjc_A 12 KVRAARTLL-AKNLSF-----------NITEDELKEVFEDA-----LEIRLV----SQDGKSKGIAYIEFKSEADAEKNL 70 (96)
T ss_dssp TTTGGGEEE-EESCCS-----------SCCHHHHHHHHCSE-----EEECCE----EETTEEEEEEEEEESSHHHHHHHH
T ss_pred cCCCCCEEE-EeCCCC-----------CCCHHHHHHHHhhC-----CcEEEe----CCCCCcceEEEEEECCHHHHHHHH
Confidence 445667788 999999 99999999999954 877655 578999999999999999998877
Q ss_pred C-CCCC
Q 025313 122 G-VPGV 126 (255)
Q Consensus 122 ~-~~g~ 126 (255)
. ++|.
T Consensus 71 ~~l~g~ 76 (96)
T 1fjc_A 71 EEKQGA 76 (96)
T ss_dssp HHTTEE
T ss_pred HHhCCC
Confidence 6 6764
No 339
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.14 E-value=2e-11 Score=85.74 Aligned_cols=63 Identities=16% Similarity=0.239 Sum_probs=53.2
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
....+++|| |+|||. ++|+++|.++|.++ |.|.++++.. .+|||||+|.+.++|++|+
T Consensus 11 ~~~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G~i~~v~~~~-----~kg~afV~f~~~~~a~~a~ 68 (99)
T 2cpj_A 11 TFTQRSRLF-VGNLPP-----------DITEEEMRKLFEKY-----GKAGEVFIHK-----DKGFGFIRLETRTLAEIAK 68 (99)
T ss_dssp CCCCTTEEE-EESCCT-----------TCCHHHHHHHTSTT-----CCCSEEEEET-----TTTEEEEECSSSHHHHHHH
T ss_pred cCCCCCEEE-EeCCCC-----------CCCHHHHHHHHhhc-----CCeEEEEEec-----CCCEEEEEECCHHHHHHHH
Confidence 446667788 999999 99999999999955 9999998873 3899999999999997776
Q ss_pred -CCCCC
Q 025313 122 -GVPGV 126 (255)
Q Consensus 122 -~~~g~ 126 (255)
.|+|.
T Consensus 69 ~~l~g~ 74 (99)
T 2cpj_A 69 VELDNM 74 (99)
T ss_dssp HHHTTC
T ss_pred HHhCCC
Confidence 55664
No 340
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.14 E-value=3.8e-11 Score=82.09 Aligned_cols=66 Identities=17% Similarity=0.245 Sum_probs=53.1
Q ss_pred CCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhC-------CccccceEEeecCCccceEEeeeCCHHH
Q 025313 44 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLG-------NEKDAQMCIYHVSWQSNFGFCCELDDEC 116 (255)
Q Consensus 44 ~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G-------~v~~v~i~~~~~~~~~g~aFV~f~~~e~ 116 (255)
..++++| |+|||. ++|+++|.++|.++. ...| .|.++++. +.+|||||+|.++++
T Consensus 4 ~~~~~l~-V~nLp~-----------~~t~~~l~~~F~~~~-~~~g~~~~~~~~v~~~~~~-----~~kg~afV~f~~~~~ 65 (87)
T 2hzc_A 4 GSARRLY-VGNIPF-----------GITEEAMMDFFNAQM-RLGGLTQAPGNPVLAVQIN-----QDKNFAFLEFRSVDE 65 (87)
T ss_dssp GGGGEEE-EESCCT-----------TCCHHHHHHHHHHHH-HHTTCCSSSSCSEEEEEEC-----SSSSEEEEEESSHHH
T ss_pred CCCCEEE-EeCCCC-----------CCCHHHHHHHHHHHh-hhcccccCCCCcceEEEec-----CCCcEEEEEcCCHHH
Confidence 4567788 999999 999999999999663 2226 77777665 348999999999999
Q ss_pred HHHHhCCCCCc
Q 025313 117 AQELTGVPGVL 127 (255)
Q Consensus 117 a~~a~~~~g~~ 127 (255)
|++|+.++|..
T Consensus 66 a~~A~~l~g~~ 76 (87)
T 2hzc_A 66 TTQAMAFDGII 76 (87)
T ss_dssp HHHHGGGTTCE
T ss_pred HHHHHhcCCCE
Confidence 98888888753
No 341
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.13 E-value=2.3e-11 Score=93.62 Aligned_cols=66 Identities=9% Similarity=0.248 Sum_probs=56.8
Q ss_pred CCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHHHHhC
Q 025313 44 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELTG 122 (255)
Q Consensus 44 ~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a~~ 122 (255)
..+++|| |+|||. .+|+++|.++|.++ |.|.+|+++.+ .+|.++|||||+|.+.++|++|+.
T Consensus 70 ~~~~~l~-V~nLp~-----------~~t~~~L~~~F~~~-----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~ 132 (165)
T 1rk8_A 70 VEGWILF-VTSIHE-----------EAQEDEIQEKFCDY-----GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKE 132 (165)
T ss_dssp C-CEEEE-EESCCT-----------TCCHHHHHHHHGGG-----SCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEE-EeCCCC-----------CCCHHHHHHHhhcC-----CCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHH
Confidence 4456688 999999 99999999999955 99999999875 689999999999999999977775
Q ss_pred -CCCC
Q 025313 123 -VPGV 126 (255)
Q Consensus 123 -~~g~ 126 (255)
|+|.
T Consensus 133 ~l~g~ 137 (165)
T 1rk8_A 133 ALNGA 137 (165)
T ss_dssp HHTTC
T ss_pred HhCCC
Confidence 6775
No 342
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.13 E-value=1.2e-11 Score=84.96 Aligned_cols=57 Identities=26% Similarity=0.386 Sum_probs=49.4
Q ss_pred CcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhC
Q 025313 45 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG 122 (255)
Q Consensus 45 ~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~ 122 (255)
.+++|| |+|||. ++|+++|.++|.++ |.|.+++++.+ ++|||||+|.+.++|++|..
T Consensus 4 ~~~~l~-V~nLp~-----------~~te~~l~~~F~~~-----G~i~~v~i~~~----~~g~afV~f~~~~~a~~~~~ 60 (88)
T 1wf0_A 4 GSSGVF-VGRCTG-----------DMTEDELREFFSQY-----GDVMDVFIPKP----FRAFAFVTFADDQIAQSLCG 60 (88)
T ss_dssp CCCEEE-EESCCS-----------SSCHHHHHHHSTTT-----SCCCEEECCSS----CCSCCEEECSCHHHHHHTTT
T ss_pred CCcEEE-EeCCCC-----------CCCHHHHHHHHHHc-----CCeeEEEEecC----CCCEEEEEECCHHHHHHHhc
Confidence 456788 999999 99999999999955 99999998743 79999999999999987654
No 343
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.12 E-value=1.8e-11 Score=96.67 Aligned_cols=63 Identities=14% Similarity=0.055 Sum_probs=56.4
Q ss_pred cccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhCCCC
Q 025313 46 TTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGVPG 125 (255)
Q Consensus 46 s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~~~g 125 (255)
.+++| |+|||. ++|+++|.++|.++ |.|.+|++..+.++.++|||||+|.++++|++|+++.+
T Consensus 109 ~~~l~-V~nLp~-----------~~t~~~L~~~F~~~-----G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~ 171 (193)
T 2voo_A 109 NRSVY-IKGFPT-----------DATLDDIKEWLEDK-----GQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG 171 (193)
T ss_dssp HTEEE-EECCCT-----------TCCHHHHHHHHTTS-----CCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT
T ss_pred cCEEE-ecCCCC-----------cCCHHHHHHHHhcC-----CCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC
Confidence 46678 999999 99999999999954 99999999988889999999999999999988887644
No 344
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.12 E-value=3.6e-11 Score=86.11 Aligned_cols=61 Identities=15% Similarity=0.309 Sum_probs=52.1
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCC-CCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGV-VTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQEL 120 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~-vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a 120 (255)
+...+++|| |+|||. + +|+++|.++|.+ ||.|.+|++ ++|||||+|.+.++|++|
T Consensus 23 ~~~~~~~l~-V~nl~~-----------~~~t~~~l~~~F~~-----~G~v~~v~i-------~~g~afV~f~~~~~A~~A 78 (110)
T 1wf1_A 23 PKSINSRVF-IGNLNT-----------ALVKKSDVETIFSK-----YGRVAGCSV-------HKGYAFVQYSNERHARAA 78 (110)
T ss_dssp CTTCSSEEE-ECSCCC-----------SSCCHHHHHHHHGG-----GSCCSEEEE-------ETTEEEEECSSSHHHHHH
T ss_pred CCCCCcEEE-EeCCCc-----------ccCCHHHHHHHHHh-----CCCeEEEEE-------eCCEEEEEECCHHHHHHH
Confidence 344556788 999999 9 999999999995 499999988 499999999999999777
Q ss_pred h-CCCCC
Q 025313 121 T-GVPGV 126 (255)
Q Consensus 121 ~-~~~g~ 126 (255)
+ .|+|.
T Consensus 79 ~~~l~g~ 85 (110)
T 1wf1_A 79 VLGENGR 85 (110)
T ss_dssp HHHHTTC
T ss_pred HHHcCCC
Confidence 7 56764
No 345
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.12 E-value=9.4e-12 Score=87.00 Aligned_cols=64 Identities=9% Similarity=0.120 Sum_probs=54.1
Q ss_pred CCcccccCCCCCCccEEEecCCCCCCCCHHHHH----HHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHH
Q 025313 44 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMV----DRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQE 119 (255)
Q Consensus 44 ~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~----~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~ 119 (255)
..++++| |+|||. ++++++|. ++|. .||.|.+|++. .+|.++|||||+|.+.++|++
T Consensus 6 ~~~~~l~-V~nLp~-----------~~~~~~l~~~l~~~f~-----~~G~i~~v~i~--~~~~~~g~afV~f~~~~~A~~ 66 (97)
T 1nu4_A 6 RPNHTIY-INNLNE-----------KIKKDELKKSLHAIFS-----RFGQILDILVS--RSLKMRGQAFVIFKEVSSATN 66 (97)
T ss_dssp CCCSEEE-EESCCT-----------TSCHHHHHHHHHHHHG-----GGSCEEEEECC--HHHHHTTCEEEEESSHHHHHH
T ss_pred CCCCEEE-EeCCCC-----------CCCHHHHHHHHHHHHH-----hCCCEEEEEEE--cCCCcCcEEEEEeCCHHHHHH
Confidence 4456788 999999 99999999 7887 44999999887 578899999999999999977
Q ss_pred HhC-CCCC
Q 025313 120 LTG-VPGV 126 (255)
Q Consensus 120 a~~-~~g~ 126 (255)
|+. |+|.
T Consensus 67 A~~~l~g~ 74 (97)
T 1nu4_A 67 ALRSMQGF 74 (97)
T ss_dssp HHHHHTTC
T ss_pred HHHHhCCC
Confidence 775 6764
No 346
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.12 E-value=4e-11 Score=85.74 Aligned_cols=62 Identities=15% Similarity=0.195 Sum_probs=53.2
Q ss_pred CCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh-
Q 025313 43 QIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT- 121 (255)
Q Consensus 43 ~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~- 121 (255)
....++|| |+|||. ++|+++|.++|.++ |.|.+|+++.+ +|||||+|.+.++|++|+
T Consensus 22 ~~~~~~l~-V~nl~~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~ 79 (109)
T 1x4g_A 22 SPKNCTVY-CGGIAS-----------GLTDQLMRQTFSPF-----GQIMEIRVFPE-----KGYSFVRFSTHESAAHAIV 79 (109)
T ss_dssp CSSCCEEE-EECCSS-----------CCCHHHHHHHHHHH-----SCEEEEEEETT-----TTEEEEEESSHHHHHHHHH
T ss_pred CCCCcEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEeCC-----CCEEEEEECCHHHHHHHHH
Confidence 34566788 999999 99999999999966 99999998744 899999999999997777
Q ss_pred CCCCC
Q 025313 122 GVPGV 126 (255)
Q Consensus 122 ~~~g~ 126 (255)
.|+|.
T Consensus 80 ~l~g~ 84 (109)
T 1x4g_A 80 SVNGT 84 (109)
T ss_dssp HHTTC
T ss_pred HcCCC
Confidence 56764
No 347
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.12 E-value=5.7e-11 Score=89.91 Aligned_cols=64 Identities=14% Similarity=0.134 Sum_probs=54.8
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
.....+++| |+|||+ ++|+++|.++|.++ |.|.+|+++.+ ++|||||+|.+.++|++|+
T Consensus 69 ~~~~~~~l~-V~nl~~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~ 127 (150)
T 2i2y_A 69 SCPLDCKVY-VGNLGN-----------NGNKTELERAFGYY-----GPLRSVWVARN----PPGFAFVEFEDPRDAADAV 127 (150)
T ss_dssp SSTTSCEEE-EESCCS-----------CCSCHHHHHHHHHH-----SCEEEEEECSS----SCSEEEEEESSHHHHHHHH
T ss_pred CCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhh-----CCEEEEEEeeC----CCcEEEEEECCHHHHHHHH
Confidence 445667788 999999 99999999999966 99999998754 6899999999999997777
Q ss_pred C-CCCC
Q 025313 122 G-VPGV 126 (255)
Q Consensus 122 ~-~~g~ 126 (255)
. |+|.
T Consensus 128 ~~l~g~ 133 (150)
T 2i2y_A 128 RELDGR 133 (150)
T ss_dssp HHHSSS
T ss_pred HHcCCC
Confidence 5 6764
No 348
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.11 E-value=5.1e-11 Score=82.45 Aligned_cols=61 Identities=18% Similarity=0.299 Sum_probs=52.5
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
....+++|| |+|||. ++|+++|.++|.++ |.|.+++++ ++||||+|.+.++|++|+
T Consensus 6 ~~~~~~~l~-V~nLp~-----------~~t~~~l~~~F~~~-----G~v~~v~~~-------~~~afV~f~~~~~a~~A~ 61 (92)
T 2dgt_A 6 SGKASTKLH-VGNISP-----------TCTNQELRAKFEEY-----GPVIECDIV-------KDYAFVHMERAEDAVEAI 61 (92)
T ss_dssp CCCSSEEEE-EESCCS-----------SCCHHHHHHHHHTT-----SCCCEEEEC-------SSEEEEEESCHHHHHHHH
T ss_pred CCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEE-------CCEEEEEECCHHHHHHHH
Confidence 455667788 999999 99999999999954 999999987 679999999999997777
Q ss_pred -CCCCC
Q 025313 122 -GVPGV 126 (255)
Q Consensus 122 -~~~g~ 126 (255)
.|+|.
T Consensus 62 ~~l~g~ 67 (92)
T 2dgt_A 62 RGLDNT 67 (92)
T ss_dssp HHHTTE
T ss_pred HHhCCC
Confidence 46764
No 349
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=4.5e-11 Score=82.85 Aligned_cols=61 Identities=16% Similarity=0.238 Sum_probs=49.7
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCC-ccccceEEeecCCccceEEeeeCCHHHHHHH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGN-EKDAQMCIYHVSWQSNFGFCCELDDECAQEL 120 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~-v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a 120 (255)
....+++|| |+|||. ++|+++|.++|.++ |. |..+.+. ++|||||+|.+.++|++|
T Consensus 4 ~~~~~~~l~-V~nLp~-----------~~t~~~l~~~F~~~-----G~vv~~~~~~------~~g~afV~f~~~~~A~~A 60 (93)
T 2cqh_A 4 GSSGMNKLY-IGNLSP-----------AVTADDLRQLFGDR-----KLPLAGQVLL------KSGYAFVDYPDQNWAIRA 60 (93)
T ss_dssp CCCCCCCEE-EECCCT-----------TCCHHHHHHHHHHT-----TCCCSSCEEE------ETTEEEECCSCHHHHHHH
T ss_pred CCCCCcEEE-EeCCCC-----------CCCHHHHHHHHHHc-----CCceEEEEEc------CCCEEEEEECCHHHHHHH
Confidence 344567788 999999 99999999999955 99 5555552 489999999999999777
Q ss_pred hC-CCC
Q 025313 121 TG-VPG 125 (255)
Q Consensus 121 ~~-~~g 125 (255)
+. |+|
T Consensus 61 ~~~l~g 66 (93)
T 2cqh_A 61 IETLSG 66 (93)
T ss_dssp HHHHTT
T ss_pred HHHccC
Confidence 65 777
No 350
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.11 E-value=4.5e-11 Score=84.31 Aligned_cols=65 Identities=14% Similarity=0.136 Sum_probs=53.5
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHHHH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQEL 120 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a 120 (255)
....+++|| |+|||. ++|+++|.++|.++ .+++++.+ .+++++|||||+|.+.++|++|
T Consensus 11 ~~~~~~~l~-V~nLp~-----------~~t~~~l~~~F~~~--------~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A 70 (102)
T 2fc8_A 11 RSQPSKTLF-VKGLSE-----------DTTEETLKESFDGS--------VRARIVTDRETGSSKGFGFVDFNSEEDAKAA 70 (102)
T ss_dssp SSCCCSSEE-EECCCT-----------TCCHHHHHHTSTTC--------SEEEEEECSSSCSEEEEEEEECSSHHHHHHH
T ss_pred CCCCCCEEE-EeCCCC-----------ccCHHHHHHHhcCC--------eEEEEEecCCCCCcCcEEEEEECCHHHHHHH
Confidence 556677888 999999 99999999999822 36666664 5889999999999999999877
Q ss_pred hC-CCCC
Q 025313 121 TG-VPGV 126 (255)
Q Consensus 121 ~~-~~g~ 126 (255)
+. |+|.
T Consensus 71 ~~~l~g~ 77 (102)
T 2fc8_A 71 KEAMEDG 77 (102)
T ss_dssp HHHHTTC
T ss_pred HHHhCCC
Confidence 76 6774
No 351
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.10 E-value=4.1e-11 Score=84.52 Aligned_cols=60 Identities=13% Similarity=0.046 Sum_probs=49.0
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
....++.|| |+|||+ .++|+++|.++|. .||.|.+|+|+. .+|||||+|.+.++|++|+
T Consensus 11 ~~~p~~~l~-V~nLp~----------~~~te~dL~~lF~-----~fG~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai 69 (102)
T 1x4d_A 11 RVETRRVVH-IMDFQR----------GKNLRYQLLQLVE-----PFGVISNHLILN-----KINEAFIEMATTEDAQAAV 69 (102)
T ss_dssp CCCCCCEEE-EESCCC----------SSSHHHHHHTTTG-----GGSCEEEEEECS-----SSSCEEEEESSHHHHHHHH
T ss_pred CCCCCCEEE-EeCCCC----------CcCCHHHHHHHHH-----hcCCEEEEEEEc-----CCCEEEEEECCHHHHHHHH
Confidence 334566777 999986 2599999999999 559999999874 3699999999999997776
Q ss_pred C
Q 025313 122 G 122 (255)
Q Consensus 122 ~ 122 (255)
.
T Consensus 70 ~ 70 (102)
T 1x4d_A 70 D 70 (102)
T ss_dssp H
T ss_pred H
Confidence 4
No 352
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.09 E-value=3.9e-11 Score=90.04 Aligned_cols=68 Identities=6% Similarity=0.056 Sum_probs=55.6
Q ss_pred CCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccc------eEEeecCCccceEEeeeCCHHH
Q 025313 43 QIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQ------MCIYHVSWQSNFGFCCELDDEC 116 (255)
Q Consensus 43 ~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~------i~~~~~~~~~g~aFV~f~~~e~ 116 (255)
...+.+|| |+|||+ ++|+++|.++|.++ |.|.++. +....+|+++|||||+|.+.++
T Consensus 42 ~~~~~~l~-V~nLp~-----------~~te~~L~~~F~~~-----G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~ 104 (143)
T 3egn_A 42 GEPNCRIY-VKNLAK-----------HVQEKDLKYIFGRY-----VDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKA 104 (143)
T ss_dssp CSCCSEEE-EEEECT-----------TCCHHHHHHHHGGG-----CCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHH
T ss_pred CCCCCEEE-EeCCCC-----------CCCHHHHHHHHHHh-----CCcccccccceeeEEeccCCCcccEEEEEeCCHHH
Confidence 34456688 999999 99999999999954 9998862 3334789999999999999999
Q ss_pred HHHHhC-CCCCc
Q 025313 117 AQELTG-VPGVL 127 (255)
Q Consensus 117 a~~a~~-~~g~~ 127 (255)
|.+|+. |||..
T Consensus 105 A~~Ai~~lng~~ 116 (143)
T 3egn_A 105 AAKALKEANGYV 116 (143)
T ss_dssp HHHHHHHHTTBE
T ss_pred HHHHHHHhCCCE
Confidence 977776 78753
No 353
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.08 E-value=1.2e-10 Score=81.71 Aligned_cols=61 Identities=11% Similarity=0.203 Sum_probs=51.5
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhh--CCccccceEEeecCCccceEEeeeCCHHHHHH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVL--GNEKDAQMCIYHVSWQSNFGFCCELDDECAQE 119 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~--G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~ 119 (255)
....+++|| |+|||. ++|+++|.++|. .| |.|.++++. +|||||+|.+.++|++
T Consensus 11 ~~~~~~~l~-V~nLp~-----------~~t~~~l~~~F~-----~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~ 66 (99)
T 2cpd_A 11 TMSSVKILY-VRNLML-----------STSEEMIEKEFN-----NIKPGAVERVKKI-------RDYAFVHFSNREDAVE 66 (99)
T ss_dssp CSSCCCEEE-EESCCT-----------TCCHHHHHHHHH-----TTSTTCEEEEEEC-------SSEEEEEESSHHHHHH
T ss_pred ccCCcCEEE-EeCCCC-----------CCCHHHHHHHHH-----hcCCcceEEEEEe-------CCeEEEEeCCHHHHHH
Confidence 445567788 999999 999999999999 66 778777765 8899999999999987
Q ss_pred HhC-CCCC
Q 025313 120 LTG-VPGV 126 (255)
Q Consensus 120 a~~-~~g~ 126 (255)
|+. |+|.
T Consensus 67 A~~~l~g~ 74 (99)
T 2cpd_A 67 AMKALNGK 74 (99)
T ss_dssp HHHHHSSE
T ss_pred HHHHhCCC
Confidence 776 7774
No 354
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.08 E-value=1.9e-11 Score=88.37 Aligned_cols=60 Identities=8% Similarity=-0.031 Sum_probs=49.7
Q ss_pred CCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhC-
Q 025313 44 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG- 122 (255)
Q Consensus 44 ~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~- 122 (255)
.....|| |+|||+ ++|+++|.++|.++ |.|.+|.|+.+ |||||+|.+.++|++|++
T Consensus 14 r~~~~l~-V~nLp~-----------~~t~~~l~~~F~~~-----G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~ 70 (115)
T 3beg_B 14 RSENRVV-VSGLPP-----------SGSWQDLKDHMREA-----GDVCYADVYRD------GTGVVEFVRKEDMTYAVRK 70 (115)
T ss_dssp ---CCEE-EEECCS-----------SCCTTHHHHHHGGG-----SCEEEEEECTT------SEEEEEESSHHHHHHHHHH
T ss_pred CCCcEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEecC------CEEEEEECCHHHHHHHHHH
Confidence 3456778 999999 99999999999955 99999988633 999999999999977776
Q ss_pred CCCC
Q 025313 123 VPGV 126 (255)
Q Consensus 123 ~~g~ 126 (255)
|||.
T Consensus 71 l~g~ 74 (115)
T 3beg_B 71 LDNT 74 (115)
T ss_dssp HTTC
T ss_pred hCCC
Confidence 6775
No 355
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.07 E-value=5.6e-11 Score=83.21 Aligned_cols=61 Identities=15% Similarity=0.225 Sum_probs=51.4
Q ss_pred CCCCcccccCCCCCC-ccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHH
Q 025313 42 SQIGTTLLFPLGTTK-HWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQEL 120 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~-~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a 120 (255)
..+.++++| |+||| . ++++++|.++|.++ |.|.++++. +|||||+|.+.++|++|
T Consensus 18 ~~~~~~~l~-V~nLp~~-----------~~t~~~L~~~F~~~-----G~v~~v~i~-------~g~afV~f~~~~~A~~A 73 (97)
T 2xnq_A 18 GSHMKSRLF-IGNLPLK-----------NVSKEDLFRIFSPY-----GHIMQINIK-------NAFGFIQFDNPQSVRDA 73 (97)
T ss_dssp -CCTTCEEE-EESCCSS-----------CCCHHHHHHHHGGG-----SCEEEEEEC-------SSEEEEEESSHHHHHHH
T ss_pred CCCCCCEEE-EeCCCcc-----------cCCHHHHHHHHHhc-----CCEEEEEEe-------CCEEEEEECCHHHHHHH
Confidence 556677788 99998 4 59999999999954 999999885 89999999999999777
Q ss_pred hC-CCCC
Q 025313 121 TG-VPGV 126 (255)
Q Consensus 121 ~~-~~g~ 126 (255)
+. ++|.
T Consensus 74 i~~l~g~ 80 (97)
T 2xnq_A 74 IEXESQE 80 (97)
T ss_dssp HHHHTTS
T ss_pred HHHcCCC
Confidence 76 6765
No 356
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.06 E-value=4.3e-11 Score=85.93 Aligned_cols=61 Identities=8% Similarity=-0.007 Sum_probs=51.7
Q ss_pred CCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhC-
Q 025313 44 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG- 122 (255)
Q Consensus 44 ~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~- 122 (255)
...++|| |+|||. ++|+++|.++|.++ |.|.+|++. .++|||||+|.+.++|++|+.
T Consensus 8 ~~~~~l~-V~nLp~-----------~~te~~L~~~F~~~-----G~i~~v~i~-----~~~g~afV~f~~~~~A~~Ai~~ 65 (111)
T 1whx_A 8 RSKTVIL-AKNLPA-----------GTLAAEIQETFSRF-----GSLGRVLLP-----EGGITAIVEFLEPLEARKAFRH 65 (111)
T ss_dssp EEEEEEE-EESCCT-----------TCCHHHHHHHHHTT-----SCEEEEECC-----SSSSCEEEEESCHHHHHHHHHH
T ss_pred CCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCEEEEEEe-----CCCCEEEEEeCCHHHHHHHHHH
Confidence 4456788 999999 99999999999955 999998876 368999999999999977764
Q ss_pred CCCC
Q 025313 123 VPGV 126 (255)
Q Consensus 123 ~~g~ 126 (255)
|+|.
T Consensus 66 l~g~ 69 (111)
T 1whx_A 66 LAYS 69 (111)
T ss_dssp HTTC
T ss_pred hCCC
Confidence 6764
No 357
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.06 E-value=2.4e-10 Score=101.13 Aligned_cols=65 Identities=12% Similarity=0.127 Sum_probs=57.1
Q ss_pred CcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEe-ecCCccceEEeeeCCHHHHHHHh-C
Q 025313 45 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELT-G 122 (255)
Q Consensus 45 ~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~-~~~~~~g~aFV~f~~~e~a~~a~-~ 122 (255)
..++|| |+|||. .+|+++|.++|.++ |.|.+|.|+.+ .++.++|||||+|.+.++|++|+ .
T Consensus 101 ~~~~lf-V~nL~~-----------~~te~~L~~~F~~~-----G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ 163 (437)
T 3pgw_S 101 AFKTLF-VARVNY-----------DTTESKLRREFEVY-----GPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKH 163 (437)
T ss_pred CCCEEE-EeCCCC-----------CCCHHHHHHHHHHc-----CCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHH
Confidence 346788 999999 99999999999965 99999998875 58999999999999999997777 6
Q ss_pred CCCC
Q 025313 123 VPGV 126 (255)
Q Consensus 123 ~~g~ 126 (255)
|||.
T Consensus 164 lng~ 167 (437)
T 3pgw_S 164 ADGK 167 (437)
T ss_pred cCCC
Confidence 7875
No 358
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.03 E-value=3.1e-10 Score=86.45 Aligned_cols=60 Identities=12% Similarity=0.012 Sum_probs=50.2
Q ss_pred ccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh-CCCC
Q 025313 47 TLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT-GVPG 125 (255)
Q Consensus 47 ~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~-~~~g 125 (255)
..++ |+||++ .+|+++|.++|+++ |.|.+|++.. ..++|||||+|.+.++|++|+ .|+|
T Consensus 47 l~l~-VgNL~~-----------~vted~L~~~Fs~f-----G~V~~V~i~~---k~~rgfAFVeF~d~~~A~~Ai~~LnG 106 (164)
T 1sjr_A 47 LRII-VENLFY-----------PVTLDVLHQIFSKF-----GTVLKIITFT---KNNQFQALLQYADPVSAQHAKLSLDG 106 (164)
T ss_dssp EEEE-ECSCCS-----------CCCHHHHHHHHHHH-----SCEEEEEEEE---SSSCEEEEEEESCHHHHHHHHHHSTT
T ss_pred EEEE-EeCcCC-----------CCCHHHHHHHHHhc-----CCEEEEEEEe---CCCCCEEEEEECCHHHHHHHHHHhCC
Confidence 3455 999999 99999999999966 9999999863 346899999999999996665 4787
Q ss_pred C
Q 025313 126 V 126 (255)
Q Consensus 126 ~ 126 (255)
.
T Consensus 107 ~ 107 (164)
T 1sjr_A 107 Q 107 (164)
T ss_dssp B
T ss_pred C
Confidence 5
No 359
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.03 E-value=8.1e-11 Score=80.76 Aligned_cols=59 Identities=14% Similarity=0.063 Sum_probs=50.0
Q ss_pred CcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhC-C
Q 025313 45 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG-V 123 (255)
Q Consensus 45 ~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~-~ 123 (255)
.++++| |+|||. ++|+++|+++|. .| .|.++++. +++|||||+|.++++|++|+. |
T Consensus 4 ~~~~l~-V~nLp~-----------~~t~~~l~~~F~-----~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l 60 (88)
T 1wg1_A 4 GSSGIL-VKNLPQ-----------DSNCQEVHDLLK-----DY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMF 60 (88)
T ss_dssp CCCCEE-EESCCS-----------SCCHHHHHHHTC-----SS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHH
T ss_pred CCCEEE-EeCCCC-----------CCCHHHHHHHHh-----hC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHh
Confidence 456688 999999 999999999999 56 78888773 789999999999999977776 6
Q ss_pred CCC
Q 025313 124 PGV 126 (255)
Q Consensus 124 ~g~ 126 (255)
+|.
T Consensus 61 ~g~ 63 (88)
T 1wg1_A 61 HQY 63 (88)
T ss_dssp TTE
T ss_pred CCC
Confidence 764
No 360
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.02 E-value=1.3e-10 Score=81.14 Aligned_cols=60 Identities=15% Similarity=0.223 Sum_probs=49.8
Q ss_pred CCCcccccCCCCCC-ccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh
Q 025313 43 QIGTTLLFPLGTTK-HWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 43 ~~~s~~~~~~~nl~-~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
...+++|| |+||| . ++|+++|.++|.++ |.|.++++. +|||||+|.+.++|++|+
T Consensus 7 ~~~~~~l~-V~nlp~~-----------~~t~~~l~~~F~~~-----G~v~~v~i~-------~g~afV~f~~~~~A~~A~ 62 (96)
T 2kvi_A 7 IPPKSRLF-IGNLPLK-----------NVSKEDLFRIFSPY-----GHIMQINIK-------NAFGFIQFDNPQSVRDAI 62 (96)
T ss_dssp --CCEEEE-EESSTTS-----------CCCHHHHHHHHTTT-----CCCCEEEEE-------TTEEEEEESCHHHHHHHH
T ss_pred CCCCCEEE-EeCCCcc-----------cCCHHHHHHHHHhc-----CCEEEEEEe-------CCEEEEEECCHHHHHHHH
Confidence 44566788 99998 4 59999999999954 999999985 899999999999997777
Q ss_pred C-CCCC
Q 025313 122 G-VPGV 126 (255)
Q Consensus 122 ~-~~g~ 126 (255)
. |+|.
T Consensus 63 ~~l~g~ 68 (96)
T 2kvi_A 63 ECESQE 68 (96)
T ss_dssp HHHTCS
T ss_pred HHcCCC
Confidence 6 6764
No 361
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=5.4e-10 Score=78.03 Aligned_cols=61 Identities=18% Similarity=0.162 Sum_probs=49.5
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
.....++|| |+|+ ++|+++|.++|.++ |.|.+|++. +++|||||+|.+.++|++|+
T Consensus 11 ~~~~~~~l~-V~n~-------------~~t~~~l~~~F~~~-----G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai 66 (97)
T 1x5p_A 11 APRKGNTLY-VYGE-------------DMTPTLLRGAFSPF-----GNIIDLSMD-----PPRNCAFVTYEKMESADQAV 66 (97)
T ss_dssp CCCCCSEEE-EECS-------------SCCHHHHHHHHTTT-----SCEEEEEEE-----TTTTEEEEEESSHHHHHHHH
T ss_pred CCCCCCEEE-EcCC-------------CCCHHHHHHHHhhC-----CCEEEEEec-----CCCCEEEEEECCHHHHHHHH
Confidence 334556777 8884 48999999999954 999998883 67999999999999997777
Q ss_pred -CCCCC
Q 025313 122 -GVPGV 126 (255)
Q Consensus 122 -~~~g~ 126 (255)
.|+|.
T Consensus 67 ~~l~g~ 72 (97)
T 1x5p_A 67 AELNGT 72 (97)
T ss_dssp HHTTTE
T ss_pred HHhCCC
Confidence 67774
No 362
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.94 E-value=7.9e-10 Score=80.65 Aligned_cols=55 Identities=11% Similarity=0.106 Sum_probs=46.3
Q ss_pred CCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccce-EEeeeCCHHHHHHHh-CCCCC
Q 025313 51 PLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNF-GFCCELDDECAQELT-GVPGV 126 (255)
Q Consensus 51 ~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~-aFV~f~~~e~a~~a~-~~~g~ 126 (255)
+|+||++ .+|+++|.++|.++ |.|.+|+|..+ .|| |||+|.+.++|.+|+ .|+|.
T Consensus 29 ~V~NL~~-----------~vt~~~L~~~Fs~y-----G~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~ 85 (124)
T 2e5i_A 29 SIQNPLY-----------PITVDVLYTVCNPV-----GKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGA 85 (124)
T ss_dssp EEESCCS-----------CCCHHHHHHHHTTT-----SCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTC
T ss_pred EEcCcCC-----------CCCHHHHHHHHHhc-----CCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCC
Confidence 3899999 99999999999955 99999998642 386 999999999996555 47775
No 363
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=7.4e-10 Score=77.05 Aligned_cols=65 Identities=8% Similarity=-0.022 Sum_probs=51.3
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccc-eEEeecCCccceEEeeeCCHHHHHHH
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQ-MCIYHVSWQSNFGFCCELDDECAQEL 120 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~-i~~~~~~~~~g~aFV~f~~~e~a~~a 120 (255)
....++++| |+|||+ ++|+++|.++|.++ |.|.+++ ++.+ ...|.|||+|.+.++|++|
T Consensus 11 ~~~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G~v~~~~~i~~~---~~~~~afV~f~~~~~a~~A 70 (96)
T 2e44_A 11 KRQRIRKLQ-IRNIPP-----------HLQWEVLDSLLVQY-----GVVESCEQVNTD---SETAVVNVTYSSKDQARQA 70 (96)
T ss_dssp CCCSCCCEE-EEEECS-----------SSCHHHHHHHHHHH-----SCEEEEEEECCS---SSSEEEEEEESSHHHHHHH
T ss_pred CCCCCCEEE-EEcCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEeecC---CCCCEEEEEECCHHHHHHH
Confidence 334567788 999999 99999999999966 9999995 5533 2233499999999999777
Q ss_pred hC-CCCC
Q 025313 121 TG-VPGV 126 (255)
Q Consensus 121 ~~-~~g~ 126 (255)
+. |+|.
T Consensus 71 i~~l~g~ 77 (96)
T 2e44_A 71 LDKLNGF 77 (96)
T ss_dssp HHHHTTC
T ss_pred HHHhCCC
Confidence 75 6764
No 364
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=98.90 E-value=3.9e-10 Score=81.74 Aligned_cols=49 Identities=2% Similarity=-0.037 Sum_probs=42.7
Q ss_pred cccCCCCC----CccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEE-eecCCccceEEeeeCC
Q 025313 48 LLFPLGTT----KHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELD 113 (255)
Q Consensus 48 ~~~~~~nl----~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~-~~~~~~~g~aFV~f~~ 113 (255)
.++ |+|| |+ .+++++|+++|.+ ||.|.++.++. ..||+++|||||+|.|
T Consensus 4 kI~-VgnL~~~~~~-----------~tte~~Lk~~Fs~-----fGeV~~~~li~Dp~Tg~slGfgfVef~d 57 (136)
T 2j8a_A 4 EIV-VYPAQDSTTT-----------NIQDISIKNYFKK-----YGEISHFEAFNDPNSALPLHVYLIKYAS 57 (136)
T ss_dssp EEE-EEESSSSCCC-----------CCCHHHHHHHHHT-----TSCCSEEEEEECTTTCCEEEEEEEECC-
T ss_pred EEE-EeCCCCCCCC-----------CCCHHHHHHHHHh-----cCCeEEEEEEecCCCCceeeEEEEEECC
Confidence 466 8888 88 8999999999994 49999999887 5578999999999996
No 365
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.88 E-value=1.3e-08 Score=70.77 Aligned_cols=72 Identities=17% Similarity=0.140 Sum_probs=66.4
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcC-----CCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEE
Q 025313 165 KTKKLFVTGLSFYTSEKTLRAAFEGF-----GELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIV 239 (255)
Q Consensus 165 ~~~~l~V~nLp~~~t~~~L~~~F~~f-----G~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~ 239 (255)
..++|-+-|||..+++..|+.+.+++ |.+..+.+..|. |-|+|+|.+...|.+|.-+|+|.+|.|++|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 36789999999999999999999999 999999999885 3599999999999999999999999999999
Q ss_pred EEE
Q 025313 240 VDV 242 (255)
Q Consensus 240 V~~ 242 (255)
+.-
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 864
No 366
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.86 E-value=9.6e-10 Score=80.63 Aligned_cols=60 Identities=13% Similarity=0.081 Sum_probs=48.9
Q ss_pred ccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccce-EEeeeCCHHHHHHHh-CCC
Q 025313 47 TLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNF-GFCCELDDECAQELT-GVP 124 (255)
Q Consensus 47 ~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~-aFV~f~~~e~a~~a~-~~~ 124 (255)
..++ |+||++ .+|+++|.++|.++ |.|.+|++..+ .+|| |||+|.+.++|++|+ .|+
T Consensus 29 L~I~-V~NL~~-----------~vte~~L~~lFs~y-----G~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~Ln 87 (130)
T 3zzy_A 29 LRII-VENLFY-----------PVTLDVLHQIFSKF-----GTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLD 87 (130)
T ss_dssp EEEE-EESCCS-----------CCCHHHHHHHHTTS-----SCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHT
T ss_pred EEEE-ECCCCC-----------CCCHHHHHHHHhCc-----CCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcC
Confidence 3445 999999 99999999999944 99999988643 3687 999999999996655 468
Q ss_pred CCc
Q 025313 125 GVL 127 (255)
Q Consensus 125 g~~ 127 (255)
|..
T Consensus 88 G~~ 90 (130)
T 3zzy_A 88 GQN 90 (130)
T ss_dssp TCE
T ss_pred CCe
Confidence 753
No 367
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.86 E-value=1.1e-09 Score=79.75 Aligned_cols=61 Identities=18% Similarity=0.170 Sum_probs=49.5
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
++..+++|| |+| . ++|+++|.++|.+ ||.|.+|++. .++|||||+|.+.++|++|+
T Consensus 35 ~~~~~~~lf-Vgn--l-----------~~te~~L~~~F~~-----~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai 90 (121)
T 2bz2_A 35 APRKGNTLY-VYG--E-----------DMTPTLLRGAFSP-----FGNIIDLSMD-----PPRNCAFVTYEKMESADQAV 90 (121)
T ss_dssp CCCCCCEEE-EEC--S-----------SCCHHHHHHHHST-----TCCCSCEEEE-----TTTTEEEEECSSHHHHHHHH
T ss_pred CCCCCCEEE-EcC--C-----------CCCHHHHHHHHHc-----cCCEEEEEEe-----CCCCEEEEEECCHHHHHHHH
Confidence 334566677 888 3 4899999999995 4999999884 67999999999999997777
Q ss_pred -CCCCC
Q 025313 122 -GVPGV 126 (255)
Q Consensus 122 -~~~g~ 126 (255)
.|+|.
T Consensus 91 ~~lng~ 96 (121)
T 2bz2_A 91 AELNGT 96 (121)
T ss_dssp HHHTTC
T ss_pred HHhCCC
Confidence 56764
No 368
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.85 E-value=7.4e-09 Score=70.90 Aligned_cols=56 Identities=5% Similarity=-0.076 Sum_probs=43.1
Q ss_pred cccccCCCCCCccEEEecCCCCCCCCHHHHH----HHHHHHHHHhhC-CccccceEEeecCCccceEEeeeCCHHHHHHH
Q 025313 46 TTLLFPLGTTKHWLVRMDKPGVGVVTKAQMV----DRYAQILTKVLG-NEKDAQMCIYHVSWQSNFGFCCELDDECAQEL 120 (255)
Q Consensus 46 s~~~~~~~nl~~~~~~~~~~~~~~vt~~~l~----~~F~~~~~~~~G-~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a 120 (255)
+.+++.|+|||+ ++++++|+ ++|. .|| +|.+| ++ |+|||.|.+.++|++|
T Consensus 8 ~~T~lYV~NL~~-----------~~~~~~lk~~L~~lF~-----~yGG~Vl~V------tg---G~AfV~F~~~esA~~A 62 (96)
T 2diu_A 8 CHTLLYVYNLPA-----------NKDGKSVSNRLRRLSD-----NCGGKVLSI------TG---CSAILRFINQDSAERA 62 (96)
T ss_dssp SSEEEEEESCCT-----------TSCHHHHHHHHHHHHH-----TTTCCEEEC------CT---TCEEEEESSHHHHHHH
T ss_pred cceEEEEeCCCC-----------cCCHHHHHHHHHHHHH-----HcCCeeEEE------ec---CEEEEEECCHHHHHHH
Confidence 444344999999 99999866 5666 445 99888 23 9999999999999666
Q ss_pred h-CCCCC
Q 025313 121 T-GVPGV 126 (255)
Q Consensus 121 ~-~~~g~ 126 (255)
+ .|+|.
T Consensus 63 ~~~l~G~ 69 (96)
T 2diu_A 63 QKRMENE 69 (96)
T ss_dssp HHHHTTC
T ss_pred HHHhcCC
Confidence 5 57774
No 369
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.83 E-value=4.4e-10 Score=79.63 Aligned_cols=58 Identities=12% Similarity=0.176 Sum_probs=46.3
Q ss_pred CCCHHHHHHHHHHHH------H-HhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh-CCCCC
Q 025313 69 VVTKAQMVDRYAQIL------T-KVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT-GVPGV 126 (255)
Q Consensus 69 ~vt~~~l~~~F~~~~------~-~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~-~~~g~ 126 (255)
.+++++|.+.|.... . +.||.|.+|+++.+.+++++|||||+|.++++|++|+ .|||.
T Consensus 26 ~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~ 91 (104)
T 1jmt_A 26 AVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNR 91 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred ccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCC
Confidence 788988887772211 1 4669999999998777899999999999999997666 47775
No 370
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=7.1e-09 Score=72.68 Aligned_cols=46 Identities=11% Similarity=0.024 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhC
Q 025313 68 GVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG 122 (255)
Q Consensus 68 ~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~ 122 (255)
+++|+++|.++|.++ |.|.+|+|+ ++++|||||+|.+.++|++|+.
T Consensus 27 ~~~te~~L~~~F~~~-----G~V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~ 72 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKY-----GEVLNLVLS----SKKPGTAVVEFATVKAAELAVQ 72 (100)
T ss_dssp CSCCHHHHHHHHHTT-----SCEEEEEEE----SSSSSEEEEEESCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhc-----CCEEEEEEc----cCCCCEEEEEECCHHHHHHHHH
Confidence 379999999999955 999999987 5789999999999999977764
No 371
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.80 E-value=1.9e-09 Score=87.33 Aligned_cols=64 Identities=13% Similarity=0.149 Sum_probs=52.5
Q ss_pred CCCCcccccCCCCCCccEEEecCCCCCCC---------CHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeC
Q 025313 42 SQIGTTLLFPLGTTKHWLVRMDKPGVGVV---------TKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCEL 112 (255)
Q Consensus 42 ~~~~s~~~~~~~nl~~~~~~~~~~~~~~v---------t~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~ 112 (255)
.....++|| ||||+. ++ ++++|.++|.+ ||.|.+|+++. ++|||||+|.
T Consensus 130 ~~~~~rtLf-VgnL~~-----------~~~~~~~~~~~tEe~L~~~F~~-----fG~I~~v~v~~-----~kG~AFV~F~ 187 (240)
T 3u1l_A 130 FRKKNKTLY-VGGIDG-----------ALNSKHLKPAQIESRIRFVFSR-----LGDIDRIRYVE-----SKNCGFVKFK 187 (240)
T ss_dssp -CCCCCEEE-EECTTG-----------GGTTCCCCHHHHHHHHHHHHHT-----TSCEEEEEEEG-----GGTEEEEEES
T ss_pred cccCCceee-cCCCCh-----------hhhcccccccCcHHHHHHHHHc-----cCCEEEEEEEC-----CCCEEEEEeC
Confidence 345667888 999999 77 79999999994 49999999873 5899999999
Q ss_pred CHHHHHHHh-CCCCCc
Q 025313 113 DDECAQELT-GVPGVL 127 (255)
Q Consensus 113 ~~e~a~~a~-~~~g~~ 127 (255)
+.++|++|+ +|+|..
T Consensus 188 ~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 188 YQANAEFAKEAMSNQT 203 (240)
T ss_dssp SHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHhCCCE
Confidence 999996665 467643
No 372
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.80 E-value=4.5e-09 Score=75.36 Aligned_cols=72 Identities=10% Similarity=-0.009 Sum_probs=51.6
Q ss_pred CCCCCCCcccccCCCCCCccEEEecCCCCC-------CCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeee
Q 025313 39 PWNSQIGTTLLFPLGTTKHWLVRMDKPGVG-------VVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCE 111 (255)
Q Consensus 39 ~~~~~~~s~~~~~~~nl~~~~~~~~~~~~~-------~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f 111 (255)
....+..+++++ +.|+.. +..- +.++++|.++|.++ |.|.+|.|. +..++|||||+|
T Consensus 8 ~~~~~~~s~~l~-l~Nl~~-------~~~~~~~~~~~~~~e~~l~~~f~~~-----G~v~~v~i~---~~~~~G~afV~f 71 (112)
T 2dit_A 8 GPSRMRHERVVI-IKNMFH-------PMDFEDDPLVLNEIREDLRVECSKF-----GQIRKLLLF---DRHPDGVASVSF 71 (112)
T ss_dssp CCCCCCSCCEEE-EESSCC-------TTHHHHCSHHHHHHHHHHHHHGGGT-----SCCSEEEEE---TTCTTCEEEEEC
T ss_pred CCCCCCCceEEE-EEcCCC-------HHHhccCHHHHHHHHHHHHHHHHcc-----CCEeEEEEe---cCCCCEEEEEEE
Confidence 334666777788 899855 1100 01357899999844 999999663 334899999999
Q ss_pred CCHHHHHHHh-CCCCC
Q 025313 112 LDDECAQELT-GVPGV 126 (255)
Q Consensus 112 ~~~e~a~~a~-~~~g~ 126 (255)
.+.++|++|+ .|||.
T Consensus 72 ~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 72 RDPEEADYCIQTLDGR 87 (112)
T ss_dssp SCHHHHHHHHHHSTTC
T ss_pred CCHHHHHHHHHHcCCC
Confidence 9999997666 67875
No 373
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.79 E-value=2.6e-09 Score=91.10 Aligned_cols=65 Identities=14% Similarity=0.100 Sum_probs=52.2
Q ss_pred CCCCcccccCCCC--CCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHH
Q 025313 42 SQIGTTLLFPLGT--TKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQE 119 (255)
Q Consensus 42 ~~~~s~~~~~~~n--l~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~ 119 (255)
....+..|| ||| |++ .+|+++|.++|.++ |.|.+|++.. +||||||+|.+.++|++
T Consensus 14 ~~~ps~~l~-VgN~gl~~-----------~~te~~L~~~F~~~-----G~V~~v~~~~-----~kgfaFV~f~~~~~A~~ 71 (345)
T 3tht_A 14 VSYATQSLV-VANGGLGN-----------GVSRNQLLPVLEKC-----GLVDALLMPP-----NKPYSFARYRTTEESKR 71 (345)
T ss_dssp CSSCCSEEE-EETCSGGG-----------TCCHHHHHHHHHTT-----SCEEEEECCT-----TCSEEEEEESSHHHHHH
T ss_pred cCCCCCEEE-EEcCCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEeC-----CCCEEEEEECCHHHHHH
Confidence 344566688 988 578 89999999999955 9999887742 58999999999999966
Q ss_pred Hh-CCCCCce
Q 025313 120 LT-GVPGVLS 128 (255)
Q Consensus 120 a~-~~~g~~~ 128 (255)
|+ +|||...
T Consensus 72 Ai~~lnG~~~ 81 (345)
T 3tht_A 72 AYVTLNGKEV 81 (345)
T ss_dssp HHHHTTTCEE
T ss_pred HHHHhCCCcc
Confidence 55 5788654
No 374
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=98.79 E-value=2.4e-09 Score=75.94 Aligned_cols=70 Identities=11% Similarity=0.003 Sum_probs=50.8
Q ss_pred CcccccCCCCCCccEEEecCCCC-CCCCHHHHHHHHHHHHHHhhCCccccceEEee--cCCccceEEeeeCCHHHHHHHh
Q 025313 45 GTTLLFPLGTTKHWLVRMDKPGV-GVVTKAQMVDRYAQILTKVLGNEKDAQMCIYH--VSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 45 ~s~~~~~~~nl~~~~~~~~~~~~-~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~--~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
.+++++ +.|+.. |.. .+-++++|++.|++ ||.|.+|+|+.+. +++++|||||+|.++++|++|+
T Consensus 7 ~s~~l~-l~Nm~~-------~~~l~dd~~~dl~~~f~~-----~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai 73 (105)
T 2pe8_A 7 PTKVVL-LRNMVG-------AGEVDEDLEVETKEECEK-----YGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAV 73 (105)
T ss_dssp CCSEEE-EESSSC-------SCCC---CHHHHHHHGGG-----GSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHH
T ss_pred CCCEEE-EEcCCC-------hHHhhHHHHHHHHHHHHh-----cCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHH
Confidence 445566 777754 110 13478999999994 4999999998753 3689999999999999996665
Q ss_pred -CCCCCc
Q 025313 122 -GVPGVL 127 (255)
Q Consensus 122 -~~~g~~ 127 (255)
.|||..
T Consensus 74 ~~lnG~~ 80 (105)
T 2pe8_A 74 VDLNGRY 80 (105)
T ss_dssp HHHTTCE
T ss_pred HHHCCCE
Confidence 578753
No 375
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.60 E-value=3.8e-08 Score=69.67 Aligned_cols=50 Identities=14% Similarity=-0.072 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHhhCCccccceEEeec---CCccceEEeeeCCHHHHHHHh-CCCCC
Q 025313 72 KAQMVDRYAQILTKVLGNEKDAQMCIYHV---SWQSNFGFCCELDDECAQELT-GVPGV 126 (255)
Q Consensus 72 ~~~l~~~F~~~~~~~~G~v~~v~i~~~~~---~~~~g~aFV~f~~~e~a~~a~-~~~g~ 126 (255)
+++|++.|+ .||.|.+|+|+++.. ++++|||||+|.++++|++|+ .|||.
T Consensus 29 ~~dl~~~f~-----k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 29 VEDVRDECS-----KYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp HHHHHHHHH-----TTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHH-----ccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 468888888 459999999987654 368999999999999996655 67874
No 376
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.40 E-value=2e-07 Score=67.23 Aligned_cols=51 Identities=6% Similarity=-0.075 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHHHhhCCccccceEEeec-----CCccceEEeeeCCHHHHHHHh-CCCCC
Q 025313 71 TKAQMVDRYAQILTKVLGNEKDAQMCIYHV-----SWQSNFGFCCELDDECAQELT-GVPGV 126 (255)
Q Consensus 71 t~~~l~~~F~~~~~~~~G~v~~v~i~~~~~-----~~~~g~aFV~f~~~e~a~~a~-~~~g~ 126 (255)
.+++|++.|. .||.|.+|+|+.+.. ++++|||||+|.++++|++|+ .|||.
T Consensus 38 leedl~eef~-----k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr 94 (118)
T 3ue2_A 38 LEGEVTEECG-----KFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGR 94 (118)
T ss_dssp HHHHHHHHHT-----TTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHh-----ccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCC
Confidence 3678888888 459999999988653 467899999999999995554 56774
No 377
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.16 E-value=7.2e-06 Score=56.81 Aligned_cols=76 Identities=13% Similarity=0.082 Sum_probs=64.5
Q ss_pred cceEEEcCCCCCC-C----HHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEE
Q 025313 166 TKKLFVTGLSFYT-S----EKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVV 240 (255)
Q Consensus 166 ~~~l~V~nLp~~~-t----~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V 240 (255)
+++|+|.||+..+ . .+.++++|.+|+++.....++.- | -..|.|.++++|.+|-..||+..++|++++|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF-----R-Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF-----K-RVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT-----T-EEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc-----e-EEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 6789999999866 2 25779999999998887777543 2 4699999999999999999999999999999
Q ss_pred EEecCCC
Q 025313 241 DVAKTTP 247 (255)
Q Consensus 241 ~~a~~~~ 247 (255)
-++.+..
T Consensus 79 YFgq~~~ 85 (104)
T 1wey_A 79 YFAQTLH 85 (104)
T ss_dssp ECCCCSS
T ss_pred EecCCCC
Confidence 9998543
No 378
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.13 E-value=6.5e-07 Score=64.14 Aligned_cols=46 Identities=7% Similarity=-0.071 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh-CCCCC
Q 025313 73 AQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT-GVPGV 126 (255)
Q Consensus 73 ~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~-~~~g~ 126 (255)
++|.+.|. .||.|.+|++.++ .++|||||+|.+.++|++|+ .|||.
T Consensus 32 edl~~~f~-----kfG~V~~v~i~~~---~~~G~~fV~f~~~e~A~~Ai~~lnG~ 78 (114)
T 3s6e_A 32 DDVIEECN-----KHGGVIHIYVDKN---SAQGNVYVKCPSIAAAIAAVNALHGR 78 (114)
T ss_dssp HHHHHHHT-----TTTCCSEEEECTT---CTTCCEEEECSSHHHHHHHHHHHTTC
T ss_pred HHHHHHHh-----ccCCEEEEEEecC---CCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 45555665 5599999988643 36999999999999996665 57875
No 379
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.93 E-value=0.00012 Score=50.43 Aligned_cols=73 Identities=15% Similarity=0.139 Sum_probs=60.4
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhc-----CCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEE
Q 025313 165 KTKKLFVTGLSFYTSEKTLRAAFEG-----FGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIV 239 (255)
Q Consensus 165 ~~~~l~V~nLp~~~t~~~L~~~F~~-----fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~ 239 (255)
...+|.|.|||..++++.|+-+|+. =|+|..+.... +-|+|+|.+.+.|++.| +-..+.|+|.+|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL-~k~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVL-AQADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHH-TCSCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHh-cCCcceecCeEEE
Confidence 3678999999999999999999986 26788887753 36999999999999998 4356889999999
Q ss_pred EEEecCC
Q 025313 240 VDVAKTT 246 (255)
Q Consensus 240 V~~a~~~ 246 (255)
|...-+.
T Consensus 78 V~P~~~~ 84 (104)
T 2dhx_A 78 LRPAPPR 84 (104)
T ss_dssp EEECCCC
T ss_pred EEcCCCC
Confidence 9775443
No 380
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.76 E-value=1.7e-05 Score=53.65 Aligned_cols=43 Identities=12% Similarity=0.214 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhCCCCCc
Q 025313 73 AQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGVPGVL 127 (255)
Q Consensus 73 ~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~~~g~~ 127 (255)
.+|.+.|.+ ||.|.++++. .+.+||+|.+.++|.+|+.|+|..
T Consensus 30 ~~L~~~F~~-----~G~Vi~vr~~-------~d~~fVtF~d~~sAlaAi~mnG~~ 72 (91)
T 2dnr_A 30 DELLQQFAS-----FGEVILIRFV-------EDKMWVTFLEGSSALNVLSLNGKE 72 (91)
T ss_dssp HHHHHHHHT-----TCCEEEEEEC-------SSSEEEEESSHHHHHHGGGGTTCE
T ss_pred HHHHHHHHh-----CCCeEEEEEe-------cCCEEEEECChHHHHHHHhcCCeE
Confidence 445566663 5999999988 344999999999999999999863
No 381
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.73 E-value=1e-05 Score=58.22 Aligned_cols=55 Identities=11% Similarity=0.008 Sum_probs=42.7
Q ss_pred ccccCCCCCCccEEEecCCCCCC-CCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCC-HHHH-HHHhCC
Q 025313 47 TLLFPLGTTKHWLVRMDKPGVGV-VTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELD-DECA-QELTGV 123 (255)
Q Consensus 47 ~~~~~~~nl~~~~~~~~~~~~~~-vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~-~e~a-~~a~~~ 123 (255)
..++ ++||+. + +++++|+++|.++ |.|..|.+... ...|||.|.+ +++| +++.++
T Consensus 19 ~il~-v~~l~~-----------~~~sredLke~F~~~-----G~V~~Vd~~~g-----~~tgfVrf~~~~~~A~~av~~l 76 (121)
T 1owx_A 19 CLLK-FSGDLD-----------DQTCREDLHILFSNH-----GEIKWIDFVRG-----AKEGIILFKEKAKEALGKAKDA 76 (121)
T ss_dssp CEEE-EEESCC-----------SSCCHHHHHHHTCSS-----CCEEEEECCTT-----CSEEEEEESSCHHHHHHHHHHT
T ss_pred eEEE-EecCCC-----------CcCCHHHHHHHHHhc-----CCEEEEEEecC-----CCEEEEEECCChHHHHHHHHHh
Confidence 3455 889988 8 9999999999954 99999988743 2269999999 6777 454444
No 382
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.69 E-value=0.00016 Score=49.19 Aligned_cols=56 Identities=21% Similarity=0.328 Sum_probs=47.8
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 025313 165 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMN 229 (255)
Q Consensus 165 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~ 229 (255)
....++| ++|+.+...||.++|+.||. ..|+.+-|. -|||.|.+++.|..|+..+.
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 3566777 99999999999999999994 556777775 79999999999999998763
No 383
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.66 E-value=0.00026 Score=48.06 Aligned_cols=78 Identities=14% Similarity=0.198 Sum_probs=61.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCC--cceEEEEEeCCHHHHHHHHHHhCCceeCC-----EEEE
Q 025313 167 KKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKR--SKGYAFIEYTTEEAASAALKEMNGKIING-----WMIV 239 (255)
Q Consensus 167 ~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~--~rg~aFV~F~~~~~A~~Al~~l~g~~l~g-----~~l~ 239 (255)
.+|-|++||+.+|++++.+.++....+........+.+.. .-.-|||.|.+.+++..-...++|+.+-+ -+-.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 4788999999999999999999998887777766553322 23569999999999999999999998753 2345
Q ss_pred EEEec
Q 025313 240 VDVAK 244 (255)
Q Consensus 240 V~~a~ 244 (255)
|++|.
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 66664
No 384
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=97.49 E-value=5e-05 Score=60.65 Aligned_cols=51 Identities=6% Similarity=-0.079 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHHHhhCCccccceEEeecC-----CccceEEeeeCCHHHHHHHh-CCCCC
Q 025313 71 TKAQMVDRYAQILTKVLGNEKDAQMCIYHVS-----WQSNFGFCCELDDECAQELT-GVPGV 126 (255)
Q Consensus 71 t~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~-----~~~g~aFV~f~~~e~a~~a~-~~~g~ 126 (255)
.+++|.+.|. .||.|.++.+.....+ +++|++||+|.+.++|++|+ .|+|.
T Consensus 142 ~~~dl~~e~~-----~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr 198 (222)
T 3dxb_A 142 LEGEVTEECG-----KFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGR 198 (222)
T ss_dssp HHHHHHHHHT-----TTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHH-----ccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCc
Confidence 4556666666 4599999998864433 88999999999999996555 46764
No 385
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.47 E-value=5.4e-05 Score=51.51 Aligned_cols=42 Identities=12% Similarity=0.090 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhCCCCC
Q 025313 73 AQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGVPGV 126 (255)
Q Consensus 73 ~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~~~g~ 126 (255)
.+|.+.|.++ |.|..+++..+ -+||+|.+.++|.+|+.|+|.
T Consensus 39 ~~L~~~F~~~-----G~Vilvr~v~d-------~~fVtF~d~~sAl~AI~ldG~ 80 (95)
T 1ufw_A 39 TELMQTLGSY-----GTIVLVRINQG-------QMLVTFADSHSALSVLDVDGM 80 (95)
T ss_dssp HHHHHHHHHH-----SCCSEEEEETT-------EEEEECSCSHHHHHHHHGGGS
T ss_pred HHHHHHHHHC-----CCEEEEEEecC-------cEEEEEcChHHHHHHHhcCCe
Confidence 4567777755 99999998743 299999999999999989885
No 386
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.46 E-value=0.0002 Score=48.93 Aligned_cols=55 Identities=22% Similarity=0.293 Sum_probs=48.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 025313 166 TKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMN 229 (255)
Q Consensus 166 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~ 229 (255)
...++| ++|+.+...||.++|+.|| -..|+.+-|. -|||.|.+++.|..|+..+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 456777 9999999999999999999 5677888775 79999999999999998774
No 387
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.38 E-value=0.002 Score=45.75 Aligned_cols=74 Identities=19% Similarity=0.311 Sum_probs=60.0
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC-EEEEEE
Q 025313 163 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIING-WMIVVD 241 (255)
Q Consensus 163 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g-~~l~V~ 241 (255)
.....-|.|-|.|... -..+...|++||.|.+.... ++ ..+-.|.|.++.+|++|| ..||..++| -.|-|.
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~----~~--~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS----NT--GNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGVK 92 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC----SS--SSEEEEEESSHHHHHHHH-TTTTCEETTTEECEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC----CC--CCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEEE
Confidence 3447789999999885 57788899999999988762 22 348999999999999999 669999985 777787
Q ss_pred Eec
Q 025313 242 VAK 244 (255)
Q Consensus 242 ~a~ 244 (255)
...
T Consensus 93 p~~ 95 (119)
T 1wwh_A 93 PCI 95 (119)
T ss_dssp ECC
T ss_pred ECC
Confidence 753
No 388
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.70 E-value=0.002 Score=44.02 Aligned_cols=79 Identities=13% Similarity=0.152 Sum_probs=55.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCC-C-cceEEEEEeCCHHHHHHHHHHhCCceeCC-----EEE
Q 025313 166 TKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISK-R-SKGYAFIEYTTEEAASAALKEMNGKIING-----WMI 238 (255)
Q Consensus 166 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g-~-~rg~aFV~F~~~~~A~~Al~~l~g~~l~g-----~~l 238 (255)
.-+|-|+.||+.+|++++.+.++..-++........+.+- . .-.-|||.|.+.++...-.+..+|+.+-+ -+-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 5679999999999999988888776554333332222111 1 12348999999999999999999988753 244
Q ss_pred EEEEec
Q 025313 239 VVDVAK 244 (255)
Q Consensus 239 ~V~~a~ 244 (255)
.|++|.
T Consensus 89 ~VE~AP 94 (97)
T 2l08_A 89 VVEFAP 94 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 566654
No 389
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.61 E-value=0.0026 Score=43.78 Aligned_cols=54 Identities=9% Similarity=-0.105 Sum_probs=42.2
Q ss_pred CCCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhCC
Q 025313 52 LGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGV 123 (255)
Q Consensus 52 ~~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~~ 123 (255)
|.|||. ++.++.|.-+|+.--..--|.|.++... .+-|+|+|.+.+.|+.+++.
T Consensus 13 V~~lPp-----------~~~~e~L~LYFEn~rrsGGG~V~~v~~~-------~~~AvItF~d~~va~rVL~k 66 (104)
T 2dhx_A 13 VRGLPP-----------AVPDELLTLYFENRRRSGGGPVLSWQRL-------GCGGVLTFREPADAERVLAQ 66 (104)
T ss_dssp EESCCT-----------TSCHHHHHHHHHCTTTTCCCCEEEEEEE-------TTEEEEEESSHHHHHHHHTC
T ss_pred EECCCC-----------CCChhHheEEEeCCCcCCCceeeEEEEc-------CCcEEEEEcChHHHHHHhcC
Confidence 778887 8999999999986322345677766654 37899999999999998865
No 390
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.38 E-value=0.0062 Score=43.87 Aligned_cols=77 Identities=22% Similarity=0.339 Sum_probs=55.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCCEEE-EEEEecCC--------CC-----CcceEEEEEeCCHHHHHHHHHHhCCc
Q 025313 166 TKKLFVTGLSFYTSEKTLRAAFEGFGELVE-VKIIMDKI--------SK-----RSKGYAFIEYTTEEAASAALKEMNGK 231 (255)
Q Consensus 166 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~-v~i~~d~~--------~g-----~~rg~aFV~F~~~~~A~~Al~~l~g~ 231 (255)
...|.|-|.|+... ..+.+.|++||.|.+ ....++.. .. ....+-.|+|+++.+|.+|| ..||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCe
Confidence 45678889987755 557789999999876 22111000 00 12457899999999999999 66999
Q ss_pred eeCCEEEEEEEec
Q 025313 232 IINGWMIVVDVAK 244 (255)
Q Consensus 232 ~l~g~~l~V~~a~ 244 (255)
.|+|..|-|.+..
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 9999988887765
No 391
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.36 E-value=0.0018 Score=57.01 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=42.6
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 025313 165 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALK 226 (255)
Q Consensus 165 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~ 226 (255)
..+.|+|. .|..+++.+|.++|++||.|.++-+..+. | -||.|+|.+.+++..++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHh
Confidence 35789997 79999999999999999999999887653 3 599999999999987763
No 392
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=96.07 E-value=0.012 Score=40.87 Aligned_cols=66 Identities=9% Similarity=-0.033 Sum_probs=45.5
Q ss_pred CCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHH-HHHhCCCCCc
Q 025313 55 TKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECA-QELTGVPGVL 127 (255)
Q Consensus 55 l~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a-~~a~~~~g~~ 127 (255)
++.++.+|+.|. .++++.|..+.+.+..-.-|.++.|.+.-+ -+=|+|+|.|...| ++++.++|..
T Consensus 20 ~~rtiaL~~ipD--tvndarIr~lve~~~~i~~g~i~KI~L~pD-----H~GAivef~d~~~AgKasLaL~G~e 86 (117)
T 2l9w_A 20 LETLICLFPLSD--KVSPSLICQFLQEEIHINEKDIRKILLVSD-----FNGAIIIFRDSKFAAKMLMILNGSQ 86 (117)
T ss_dssp TTSCEEEECCCT--TCCHHHHHHHHHHHTCCCTTTCSEEEEETT-----TTEEEEECSCHHHHHHHHHHHSSEE
T ss_pred CCcEEEEecCCC--CCCHHHHHHHHhhhhccCccceeEEEEecC-----CCceEEEEccchhhHHHHhhcCCee
Confidence 344555555554 799999999999552222255655555423 57799999999999 7777888753
No 393
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=92.76 E-value=0.27 Score=34.73 Aligned_cols=59 Identities=19% Similarity=0.218 Sum_probs=45.7
Q ss_pred CccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhCCCCCc
Q 025313 56 KHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGVPGVL 127 (255)
Q Consensus 56 ~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~~~g~~ 127 (255)
+.|+.|--+|+. .-..+.++|.++ |.|.+... .....+-.|.|.++.+|++|+..||.+
T Consensus 24 ~~wVtVFGFp~~---~~~~VL~~F~~~-----G~Iv~~~~-----~~~~NWihI~Y~s~~~A~rAL~kNG~i 82 (119)
T 1wwh_A 24 DTWVTVFGFPQA---SASYILLQFAQY-----GNILKHVM-----SNTGNWMHIRYQSKLQARKALSKDGRI 82 (119)
T ss_dssp GGEEEEECCCGG---GHHHHHHHHHTT-----SCEEEEEE-----CSSSSEEEEEESSHHHHHHHHTTTTCE
T ss_pred CCEEEEECCCHH---HHHHHHHHHHhh-----CcEEEecc-----CCCCCeEEEEeCCHHHHHHHHHhCCeE
Confidence 567777777763 466888889955 99976654 233568999999999999999999865
No 394
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=92.63 E-value=0.4 Score=42.86 Aligned_cols=56 Identities=23% Similarity=0.309 Sum_probs=46.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 025313 166 TKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNG 230 (255)
Q Consensus 166 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g 230 (255)
...++|+ +|..+...+|.++|+.||. .+|+.+-|. .|||.|.+.+.|..+++.+..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widdt-------~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSSS-------EEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcCC-------eEEEEECCHHHHHHHHHHHHh
Confidence 5577776 8989999999999999995 456666553 799999999999999998853
No 395
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=92.10 E-value=0.53 Score=31.94 Aligned_cols=42 Identities=12% Similarity=0.090 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhC
Q 025313 69 VVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG 122 (255)
Q Consensus 69 ~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~ 122 (255)
++...||.++|. .||.| .|+.+ + -.-|||.|.+++.|..|+.
T Consensus 26 ewKt~DI~~lFs-----~fggv-~I~Wi-d-----DTsAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 26 EWKTSDLYQLFS-----AFGNI-QISWI-D-----DTSAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp TCCHHHHHHHHT-----TTCSC-CCEEE-E-----TTEEEEECSCHHHHHHHHH
T ss_pred hhhhHHHHHHhh-----ccCCE-EEEEE-c-----CCeEEEEecCHHHHHHHHH
Confidence 899999999999 45844 44443 2 4589999999999977765
No 396
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=89.23 E-value=0.14 Score=45.17 Aligned_cols=47 Identities=6% Similarity=0.037 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhCCC
Q 025313 69 VVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGVP 124 (255)
Q Consensus 69 ~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~~~ 124 (255)
.+++.+|.++|. .||+|.++.+-.+ ..-||.|+|.+.+++++++...
T Consensus 63 ~~~~~~l~~y~~-----~~g~i~~~~~~~~----~g~~~~vef~~~~~~~~~~~~~ 109 (464)
T 3pq1_A 63 KISENKFLKYLS-----QFGPINNHFFYES----FGLYAVVEFCQKESIGSLQNGT 109 (464)
T ss_dssp C---CHHHHHHG-----GGSCCCCEEEECS----SSEEEEEECC---CCHHHHSSC
T ss_pred CCCHHHHHHHHH-----hcCCcceEEEEcc----CCeEEEEEeCCHHHHHHHHhcc
Confidence 799999999999 5599998887521 1259999999999999887654
No 397
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=85.71 E-value=1.4 Score=31.57 Aligned_cols=67 Identities=7% Similarity=0.030 Sum_probs=42.7
Q ss_pred CCCCccEEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccc-cceEEee---------cC-----CccceEEeeeCCHHHH
Q 025313 53 GTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKD-AQMCIYH---------VS-----WQSNFGFCCELDDECA 117 (255)
Q Consensus 53 ~nl~~~~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~-v~i~~~~---------~~-----~~~g~aFV~f~~~e~a 117 (255)
.+-..|++|--+|+ .....+.+.|+++ |.|.+ ..+.... .. ....+-.|+|.++.+|
T Consensus 4 ~~~e~~VtVFGFp~---~~~~~VI~~Fs~~-----G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A 75 (132)
T 3p3d_A 4 SNGELAILVFGYPE---TMANQVIAYFQEF-----GTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASA 75 (132)
T ss_dssp ----CEEEEECCCG---GGHHHHHHHHGGG-----SCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHH
T ss_pred ccCceEEEEEecCH---HHHHHHHHHHHhh-----ceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHH
Confidence 34445667777664 4666888889955 99966 3221100 00 1345779999999999
Q ss_pred HHHhCCCCCc
Q 025313 118 QELTGVPGVL 127 (255)
Q Consensus 118 ~~a~~~~g~~ 127 (255)
++|+..||..
T Consensus 76 ~rAL~~NG~i 85 (132)
T 3p3d_A 76 VDALLENGAV 85 (132)
T ss_dssp HHHHTTTTCE
T ss_pred HHHHHhCCeE
Confidence 9999988854
No 398
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=81.53 E-value=1.1 Score=30.49 Aligned_cols=49 Identities=10% Similarity=0.119 Sum_probs=35.6
Q ss_pred EEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHhC
Q 025313 60 VRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG 122 (255)
Q Consensus 60 ~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~~ 122 (255)
+..++|+ ++...||.++|. .||.| .|+.+ + -.-|||.|.+++.|..|+.
T Consensus 9 ~~l~FP~--ewKt~Di~~lFs-----~fggv-~I~Wi-d-----DTsAlvvf~~~~~a~~al~ 57 (101)
T 3ctr_A 9 LHVTFPK--EWKTSDLYQLFS-----AFGNI-QISWI-D-----DTSAFVSLSQPEQVKIAVN 57 (101)
T ss_dssp EEEECCT--TCCHHHHHHHTT-----TSEEE-EEEEE-E-----TTEEEEEEEEECHHHHHHH
T ss_pred EEEeCCh--hhhhHHHHHHHh-----ccCCE-EEEEE-c-----CCeEEEEecCHHHHHHHHH
Confidence 3335555 799999999999 55843 33333 2 4589999999999977665
No 399
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=77.73 E-value=6.1 Score=24.96 Aligned_cols=68 Identities=16% Similarity=0.261 Sum_probs=42.4
Q ss_pred eEEEc-CCCCCCCHHHHHHHHhcCC-----CEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 025313 168 KLFVT-GLSFYTSEKTLRAAFEGFG-----ELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 241 (255)
Q Consensus 168 ~l~V~-nLp~~~t~~~L~~~F~~fG-----~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l~g~~l~g~~l~V~ 241 (255)
+|||. +--..+...+|..++..-+ .|-.+.+..+ |.||+-... .|..+++.|++..+.|+++.+.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNG-KGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTT-CHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHH-HHHHHHHHhccccCcCceEEEE
Confidence 45553 2234456677777776443 3556776433 799998764 6788999999999999999988
Q ss_pred Eec
Q 025313 242 VAK 244 (255)
Q Consensus 242 ~a~ 244 (255)
.++
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 764
No 400
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=70.24 E-value=14 Score=25.22 Aligned_cols=65 Identities=6% Similarity=-0.041 Sum_probs=35.2
Q ss_pred CCCccEEEecCCCCCCC-CHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHH-HhCCCCC
Q 025313 54 TTKHWLVRMDKPGVGVV-TKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQE-LTGVPGV 126 (255)
Q Consensus 54 nl~~~~~~~~~~~~~~v-t~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~-a~~~~g~ 126 (255)
.+|.++++.+.+. +| +.+++++-|+..+. .++++..-... ++-.=.-|.|.++++|.+ -+.+++.
T Consensus 3 ~~pntLiitnl~~--~vF~~~~lk~~~e~Lf~-~~~~~~tF~~l-----kSFRRirv~F~~~~~A~~AR~~Lh~~ 69 (104)
T 1wey_A 3 SGSSGLIACVAND--DVFSESETRAKFESLFR-TYDKDTTFQYF-----KSFKRVRINFSNPLSAADARLRLHKT 69 (104)
T ss_dssp SCCCEEEEECCCG--GGGSTTTHHHHHHHHHH-TTCSSCEEEEE-----TTTTEEEEECSSTTHHHHHHHTSTTS
T ss_pred CCCceEEEecCCH--HHcCCHHHHHHHHHHHH-hhCcCcceeec-----CcceEEEEEeCChHHHHHHHHHhccc
Confidence 4566666666643 33 44444443333322 33776554443 112345788999999944 4566653
No 401
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=55.03 E-value=27 Score=26.10 Aligned_cols=57 Identities=21% Similarity=0.278 Sum_probs=37.3
Q ss_pred cceEEEcCCCC-C--------CCHHHHHHHH--hcCCCEEEEEEEecCCCCCcceEEEEEeCC-HHHHHHHH
Q 025313 166 TKKLFVTGLSF-Y--------TSEKTLRAAF--EGFGELVEVKIIMDKISKRSKGYAFIEYTT-EEAASAAL 225 (255)
Q Consensus 166 ~~~l~V~nLp~-~--------~t~~~L~~~F--~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~-~~~A~~Al 225 (255)
+..+.|-|+|. . .+..+|++.| +.|.++. |+.+..+ .| ++|+|.|.|.+ -.--..|+
T Consensus 12 PwmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~-~G-h~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 12 PWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY-LG-HSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp SCEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS-SB-EEEEEEEECCSSHHHHHHHH
T ss_pred CCEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC-CC-CceeEEEEecCChHHHHHHH
Confidence 34566778776 2 3457899977 9998866 4444443 33 78999999985 33334444
No 402
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=40.60 E-value=52 Score=24.20 Aligned_cols=37 Identities=16% Similarity=0.166 Sum_probs=29.5
Q ss_pred CCHHHHHHHHhcCCCEE---EEEEEecCCCCCcceEEEEE
Q 025313 178 TSEKTLRAAFEGFGELV---EVKIIMDKISKRSKGYAFIE 214 (255)
Q Consensus 178 ~t~~~L~~~F~~fG~i~---~v~i~~d~~~g~~rg~aFV~ 214 (255)
.++++|+++-.+.|.+. ...+..|..+|+.+.+||-+
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 58999999999999874 55666675589999888864
No 403
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.11 E-value=12 Score=22.84 Aligned_cols=12 Identities=8% Similarity=-0.056 Sum_probs=10.0
Q ss_pred ccceEEeeeCCH
Q 025313 103 QSNFGFCCELDD 114 (255)
Q Consensus 103 ~~g~aFV~f~~~ 114 (255)
.+..|||.|.|.
T Consensus 34 ~~~~ClV~FeD~ 45 (63)
T 2e5q_A 34 SKQSCLVTFEDN 45 (63)
T ss_dssp TTSEEEEEETTS
T ss_pred CCCEEEEEEccC
Confidence 478999999874
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=31.62 E-value=1.1e+02 Score=20.06 Aligned_cols=55 Identities=15% Similarity=0.193 Sum_probs=44.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 025313 166 TKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEM 228 (255)
Q Consensus 166 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~aFV~F~~~~~A~~Al~~l 228 (255)
.+-+-|-|+|..+-..++--.....|---.|..+ .|-|.|.|.+.++..-|++.|
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHH
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHH
Confidence 5668888999999888888777777865555544 246999999999999999887
No 405
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=34.46 E-value=12 Score=25.60 Aligned_cols=60 Identities=15% Similarity=0.093 Sum_probs=37.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEE--EEEeCCHHHHHHHHHHhCC
Q 025313 166 TKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYA--FIEYTTEEAASAALKEMNG 230 (255)
Q Consensus 166 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~d~~~g~~rg~a--FV~F~~~~~A~~Al~~l~g 230 (255)
..+|-+.... +++++..+..+.+ +..+.+.+...+|++. |- +=.|.+.++|..|+..|-.
T Consensus 25 ~YTLQL~a~~---~~~~l~~f~~~~~-l~~~~v~~t~rnGk~W-yvVlyG~Y~s~~~A~~A~~~LP~ 86 (106)
T 2lfv_A 25 HYTLQLSSSS---NYDNLNGWAKKEN-LKNYVVYETTRNGQPW-YVLVSGVYASKEEAKKAVSTLPA 86 (106)
Confidence 4556555543 4566777777776 3445555544445442 33 2278999999999988854
No 406
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.67 E-value=16 Score=22.61 Aligned_cols=13 Identities=15% Similarity=-0.059 Sum_probs=10.5
Q ss_pred CccceEEeeeCCH
Q 025313 102 WQSNFGFCCELDD 114 (255)
Q Consensus 102 ~~~g~aFV~f~~~ 114 (255)
..++.|||.|+|.
T Consensus 35 ~~~~~ClV~FeD~ 47 (68)
T 2e5p_A 35 SAREVCLVQFEDD 47 (68)
T ss_dssp TTTTEEEEEETTT
T ss_pred cCCcEEEEEEccC
Confidence 3488999999885
No 407
>2hiq_A Hypothetical protein YDHR; hypothetical protein JW1657, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: d.58.4.12 PDB: 1wd6_A
Probab=26.12 E-value=1.6e+02 Score=20.21 Aligned_cols=64 Identities=11% Similarity=0.079 Sum_probs=41.3
Q ss_pred EEEecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeec--CCccceEEeeeCCHHHHHHHhCCC
Q 025313 59 LVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHV--SWQSNFGFCCELDDECAQELTGVP 124 (255)
Q Consensus 59 ~~~~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~--~~~~g~aFV~f~~~e~a~~a~~~~ 124 (255)
++..++++++.+ -+++.+.|.+.-.+ +-.......+.+.. .....=|+=.|.+.++|++-++++
T Consensus 11 llqV~F~~~gP~-geE~~~~f~~lA~s-i~~epGLiwKiWte~e~t~~aGGiYLFes~~~AeaY~~~h 76 (113)
T 2hiq_A 11 LLQLHFAFNGPF-GDAMAEQLKPLAES-INQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKH 76 (113)
T ss_dssp EEEEEEECCCCC-HHHHHHHSHHHHHH-HTTSTTEEEEEEEEETTTTEEEEEEEESSHHHHHHHHHHH
T ss_pred eEEEEecCCCch-HHHHHHHHHHHHHH-HhcCCCcEEEEEEEcCCCCeeeEEEEeCCHHHHHHHHHHH
Confidence 678888888777 78899988865322 23333333333222 233456677799999998876553
No 408
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=26.01 E-value=1.1e+02 Score=20.04 Aligned_cols=26 Identities=15% Similarity=0.199 Sum_probs=21.8
Q ss_pred CEEEEEEEecCCCCCcceEEEEEeCC
Q 025313 192 ELVEVKIIMDKISKRSKGYAFIEYTT 217 (255)
Q Consensus 192 ~i~~v~i~~d~~~g~~rg~aFV~F~~ 217 (255)
+|.++++.+-...|+-++||=|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57888888777678999999999985
No 409
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=22.36 E-value=1.3e+02 Score=20.17 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=21.8
Q ss_pred CEEEEEEEecCCCCCcceEEEEEeCC
Q 025313 192 ELVEVKIIMDKISKRSKGYAFIEYTT 217 (255)
Q Consensus 192 ~i~~v~i~~d~~~g~~rg~aFV~F~~ 217 (255)
+|.+|++.+-...|+-++||=|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57888888777678999999999985
No 410
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=22.02 E-value=86 Score=27.72 Aligned_cols=46 Identities=13% Similarity=0.115 Sum_probs=32.3
Q ss_pred ecCCCCCCCCHHHHHHHHHHHHHHhhCCccccceEEeecCCccceEEeeeCCHHHHHHHh
Q 025313 62 MDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 121 (255)
Q Consensus 62 ~~~~~~~~vt~~~l~~~F~~~~~~~~G~v~~v~i~~~~~~~~~g~aFV~f~~~e~a~~a~ 121 (255)
..+|. .+...+|.+.|+ .||.+ +|+.. + ...|||.|.+.+.|..++
T Consensus 445 v~f~~--~~~~~~i~~~fs-----~fg~v-~V~wi-d-----dt~a~V~~~~~~~a~~~l 490 (507)
T 3d45_A 445 VTFPK--EWKTSDLYQLFS-----AFGNI-QISWI-D-----DTSAFVSLSQPEQVQIAV 490 (507)
T ss_dssp EECCT--TCCHHHHHHHGG-----GGCCC-EEEEC-S-----SSEEEEECSCHHHHHHHH
T ss_pred EeCCC--CCCHHHHHHHHH-----hcCCE-EEEEE-c-----CCeEEEEECCHHHHHHHH
Confidence 33454 688899999998 55843 34332 2 457999999999996554
No 411
>3u7d_B Protein HEG homolog 1; FERM domain, RAP1 effector, membrane protein cytoplasmic TAI protein binding; 2.49A {Homo sapiens}
Probab=21.36 E-value=28 Score=16.63 Aligned_cols=11 Identities=27% Similarity=0.884 Sum_probs=9.4
Q ss_pred ceeccccCCcc
Q 025313 2 CIYDASCDTHF 12 (255)
Q Consensus 2 ~~~~~~~~~~~ 12 (255)
|+|-.-|+.++
T Consensus 5 ciypgqynpsf 15 (26)
T 3u7d_B 5 CIFPGQYNPSF 15 (26)
T ss_pred ccccCccCccc
Confidence 88888888876
No 412
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=21.10 E-value=1.5e+02 Score=20.14 Aligned_cols=26 Identities=15% Similarity=0.199 Sum_probs=21.3
Q ss_pred CEEEEEEEecCCCCCcceEEEEEeCC
Q 025313 192 ELVEVKIIMDKISKRSKGYAFIEYTT 217 (255)
Q Consensus 192 ~i~~v~i~~d~~~g~~rg~aFV~F~~ 217 (255)
+|.+|++.+-...|+-++||=|+|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 47788887776678899999999985
Done!