Query 025314
Match_columns 254
No_of_seqs 114 out of 214
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 07:50:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025314.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025314hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vx8_B Autophagy-related prote 100.0 1.8E-87 6.3E-92 613.8 7.0 223 26-254 5-227 (292)
2 2dyt_A Autophagy-related prote 100.0 1.2E-81 4.2E-86 580.4 2.1 211 6-253 3-223 (312)
3 4ebr_A Ubiquitin-like-conjugat 99.4 1.1E-13 3.6E-18 117.6 1.8 58 197-254 61-125 (169)
4 3vx7_B E2; ubiquitin conjugati 97.0 0.00035 1.2E-08 58.7 2.8 54 198-254 48-111 (152)
5 2lpu_A Kmatg10; autophagy, E2- 94.0 0.0042 1.4E-07 52.0 0.0 27 199-225 49-75 (152)
6 1ufn_A Putative nuclear protei 41.3 8.3 0.00028 29.7 1.0 20 32-53 49-68 (94)
7 1h5p_A Nuclear autoantigen SP1 39.2 9.3 0.00032 29.5 1.0 20 32-53 44-63 (95)
8 3ndq_A Transcription elongatio 28.3 12 0.00041 29.0 -0.1 35 4-40 64-98 (108)
9 1oqj_A Glucocorticoid modulato 27.0 22 0.00074 27.5 1.2 22 30-53 40-61 (97)
10 1wey_A Calcipressin 1; structu 23.3 17 0.00057 28.4 -0.1 8 68-75 96-103 (104)
11 2dme_A PHD finger protein 3; P 23.2 19 0.00064 28.4 0.2 35 4-40 63-97 (120)
12 1x66_A Friend leukemia integra 22.8 20 0.00068 27.4 0.3 50 11-60 37-96 (98)
13 2lw4_A Transcription elongatio 21.4 24 0.00083 27.5 0.5 36 3-40 59-94 (113)
14 1vqz_A Lipoate-protein ligase, 21.3 39 0.0013 30.7 1.9 28 31-58 227-254 (341)
No 1
>3vx8_B Autophagy-related protein 3; E1-E2 complex, ligase; 3.11A {Arabidopsis thaliana}
Probab=100.00 E-value=1.8e-87 Score=613.76 Aligned_cols=223 Identities=78% Similarity=1.245 Sum_probs=114.9
Q ss_pred ccccccccCHHHHHHhcccccccCCceecCCCCCCCCCCCCCCCCeeEEecCCCchhhhhhhhhhhhccCCcccccCCCC
Q 025314 26 AFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDN 105 (254)
Q Consensus 26 ~F~etG~lTPeEFV~AGD~LV~k~PTW~W~~g~~~k~r~yLP~dKQfLvTRnVPC~~R~~~~~~e~~~~~~~~~~~~~~d 105 (254)
+|++||+|||||||+||||||||||||||++|+++|+|+|||+||||||||||||+|||++|.++|....++++++++++
T Consensus 5 ~F~etG~lTPEEFV~AGD~LV~kfPTW~W~~g~~~k~~~yLP~dKQfLvTRnVPC~~R~~~~~~~~~~~~e~~~~~~d~d 84 (292)
T 3vx8_B 5 AFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGDASKRKPYLPSDKQFLITRNVPCLRRAASVAEDYEAAGGEVLVDDEDN 84 (292)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHHCTTCEEECCCGGGCCTTSCTTCSEEEEEEEEECSCTTC-------------------
T ss_pred ceeeCceeCHHHHHhhhhhhhhcCCCccCCCCCccccccCCCCCCeEEEECCcccHHHhhhhhccccccchhhccccCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999777877777777667778
Q ss_pred CceeecCCCCCCCCCCCccCCCCCchhhhhccccccccccCCCCCCCCCcCCccCccccCCCCCCccCCCCCCCCCCccc
Q 025314 106 DGWLATHGKPKAKCDEDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATLPSTYL 185 (254)
Q Consensus 106 dgWv~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dm~~~~~~~~l~~~edD~~~~~~~~~ 185 (254)
+|||.||+..... ....+.+++|+...........+..+. ..++++++|+||++++++++++ ++|++++.+++.
T Consensus 85 dgWv~t~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~d~~ei~Dmdd~~d~~~~~--~dd~a~~~~~~~ 158 (292)
T 3vx8_B 85 DGWLATHGKPKDK--GKEEDNLPSMDALDINEKNTIQSIPTY--FGGEEDDDIPDMEEFDEADNVV--ENDPATLQSTYL 158 (292)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceeecCCccccc--ccccccccccccccccccccccccccc--cccccccccCchhhhhcccccc--ccchhhhccccc
Confidence 8999999753221 123456777765532211111111111 2346788999999998877654 566666544333
Q ss_pred ccCCCCCCCccceeEEEEEEEeeCCCCCceeEEeeecCCCCCCChhhHhhhhcccccCCceecccCCCC
Q 025314 186 VAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKTVRGVLYVHL 254 (254)
Q Consensus 186 ~~~~~~~~~i~~~RtYDL~ITYDkyYqTPRlwL~GYde~~~PLt~~emfEDIs~Dya~KTVTiE~hPhl 254 (254)
...++++++|+++||||||||||+|||||||||+||+++|+||+++||||||+++|++||||||.||||
T Consensus 159 ~~~~~~~~~i~~~RtYd~~ItYs~~YqtPrLyl~gy~~~g~PL~~ee~~edi~~d~~~ktVT~e~HP~l 227 (292)
T 3vx8_B 159 VAHEPDDDNILRTRTYDLSITYDKYYQTPRVWLTGYDESRMLLQPELVMEDVSQDHARKTVTIEDHPHL 227 (292)
T ss_dssp ----------CCCEEEEEEEEEETTTTEEEEEEEEECTTSCBCCGGGGGGTSCCC----CEEEEECSSS
T ss_pred cccccCcccccceEEEEEEEEEECCCCCCeEEEEEECCCCCcCCHHHHHHHhhhhhhcceEEeecCCcc
Confidence 223334678999999999999999999999999999999999999999999999999999999999997
No 2
>2dyt_A Autophagy-related protein 3; E2 fold, ligase; 2.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-81 Score=580.37 Aligned_cols=211 Identities=25% Similarity=0.457 Sum_probs=121.3
Q ss_pred HHHHHHhhhhhhcccCCCCCccccccccCHHHHHHhcccccccCCceecCCC-CCCCCCCCCCCCCeeEEecCCCchhhh
Q 025314 6 KFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESG-EPSKRKSYLPADKQFLITRNVPCLRRA 84 (254)
Q Consensus 6 ~~~s~~~~~~e~ltPv~~~S~F~etG~lTPeEFV~AGD~LV~k~PTW~W~~g-~~~k~r~yLP~dKQfLvTRnVPC~~R~ 84 (254)
.|+|+|++||||||||+|+|+|++||+|||||||+||||||||||||||++| +++|+|+|||+||||||||||||+|||
T Consensus 3 ~~~s~~~~~~e~ltpv~~~S~F~etG~lTPeEFV~AGD~Lv~k~PTW~W~~~~~~~k~~~yLP~dKQfLiTRnVPC~~R~ 82 (312)
T 2dyt_A 3 MIRSTLSSWREYLTPITHKSTFLTTGQITPEEFVQAGDYLCHMFPTWKWNEESSDISYRDFLPKNKQFLIIRKVPCDKRA 82 (312)
T ss_dssp --------------------CHHHHSCCCHHHHHHHHHHHHHHCTTCEECCCCTTBCCCTTSCTTCSCEEEEEEEECSCT
T ss_pred hHHHHHHHHHHHhcCCCCccccccCcccCHHHHHhcchhhhhhCCccccccCCCcccccCCCCCCceEEEecCcccHHHh
Confidence 5899999999999999999999999999999999999999999999999865 788999999999999999999999999
Q ss_pred hhhhhhhhccCCcccc-------cCCCCCceeecC--CCCCCCCCCCccCCCCCchhhhhccccccccccCCCCCCCCCc
Q 025314 85 ASVEEEYEGAGGEILV-------DNEDNDGWLATH--GKPKAKCDEDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEE 155 (254)
Q Consensus 85 ~~~~~e~~~~~~~~~~-------~~~~ddgWv~t~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (254)
++| +....+++++ ++++++|||.|| +...........+.|++|+ +.+++
T Consensus 83 ~~~---~~~~~~~~~~~~~~~~~~~~~~dgWv~t~~~~~~~~~~~~~~~~~i~~~~-------------------~~~d~ 140 (312)
T 2dyt_A 83 EQC---VEVEGPDVIMKGFAEDGDEDDVLEYIGSETEHVQSTPAGGTKDSSIDDID-------------------ELIQD 140 (312)
T ss_dssp TTC------------------------------------------------CHHHH-------------------HHHHH
T ss_pred hhc---cccchhhhhhccccccccccCCCceeeccccccccCcccccccccccccc-------------------ccccc
Confidence 998 3444444443 345678999998 2111000000011111110 00112
Q ss_pred CCccCccccCCCCCCccCCCCCCCCCCcccccCCCCCCCccceeEEEEEEEeeCCCCCceeEEeeecCCCCCCChhhHhh
Q 025314 156 EDIPDMAEYNEPDSIIENETDPATLPSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILE 235 (254)
Q Consensus 156 ~~i~Dm~~~~~~~~l~~~edD~~~~~~~~~~~~~~~~~~i~~~RtYDL~ITYDkyYqTPRlwL~GYde~~~PLt~~emfE 235 (254)
++|+|.+ + ++|++++.... ..+++|.++|+||+|||||+|||||||||+||+++|+||+++||||
T Consensus 141 ~~~~d~~------~----~~d~~~~~~~~-----~~~~~~~~~rtYd~~ItYs~sYqvPvLyf~gy~~dg~PL~~~e~~e 205 (312)
T 2dyt_A 141 MEIKEED------E----NDDTEEFNAKG-----GLAKDMAQERYYDLYIAYSTSYRVPKMYIVGFNSNGSPLSPEQMFE 205 (312)
T ss_dssp HHHC-----------------------------------CCCCEEEEEEEEEETTTTEEEEEEEEEETTCCBCCHHHHHT
T ss_pred ccccccc------c----cCCHHHhhccc-----cccCCccceEEEEEEEEEecCccCCeEEEEeECCCCCCCCHHHHHH
Confidence 2222211 0 22322221111 1355789999999999999999999999999999999999999999
Q ss_pred hhcccccCCceecccCCC
Q 025314 236 DVSQDHARKTVRGVLYVH 253 (254)
Q Consensus 236 DIs~Dya~KTVTiE~hPh 253 (254)
||+++|+.||||+|.|||
T Consensus 206 di~~d~~~ktVT~e~HP~ 223 (312)
T 2dyt_A 206 DISADYRTKTATIEKLPF 223 (312)
T ss_dssp TSCTTTHHHHEEEEECTT
T ss_pred HHHHhhccCceecccCCC
Confidence 999999999999999999
No 3
>4ebr_A Ubiquitin-like-conjugating enzyme ATG10; autophagy, ligase, protein binding, A ATG5, thiolation; 2.70A {Saccharomyces cerevisiae}
Probab=99.36 E-value=1.1e-13 Score=117.62 Aligned_cols=58 Identities=14% Similarity=0.088 Sum_probs=52.4
Q ss_pred ceeEEEEEEEeeCCCCCceeEEeeecCCCCCCChh------hHhhhhcccccCCceeccc-CCCC
Q 025314 197 RTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTE------LILEDVSQDHARKTVRGVL-YVHL 254 (254)
Q Consensus 197 ~~RtYDL~ITYDkyYqTPRlwL~GYde~~~PLt~~------emfEDIs~Dya~KTVTiE~-hPhl 254 (254)
+.++||++||||++||||||||+||+++|.||.+. ++++++++.++.+|||++. ||++
T Consensus 61 ~~~~id~~I~Ys~sYqVPvL~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~Hp~~ 125 (169)
T 4ebr_A 61 LLNHIELYLTYSKVYNEPLLLLRIWEEKSIDGIPMTKLMLPTDIESLLDVQGKFQLGLDTIINLE 125 (169)
T ss_dssp CCEEEEEEEEEETTTTEEEEEEEEEEEEEETTEEEEEECCHHHHHHHHTTTTCCCCSSEEEEEET
T ss_pred cceEEEEEEEEecccCCcEEEEEEEcCCCCccchhhhhcchHHHHHHhccccceEEEeccCCCCC
Confidence 56899999999999999999999999999887775 7899999999999999886 6654
No 4
>3vx7_B E2; ubiquitin conjugation; 3.20A {Kluyveromyces marxianus} PDB: 2lpu_A
Probab=96.97 E-value=0.00035 Score=58.69 Aligned_cols=54 Identities=13% Similarity=0.137 Sum_probs=38.8
Q ss_pred eeEEEEEEEeeCCCCCceeEEeeecCCCCCCChhhH-----h-----hhhcccccCCceecccCCCC
Q 025314 198 TRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELI-----L-----EDVSQDHARKTVRGVLYVHL 254 (254)
Q Consensus 198 ~RtYDL~ITYDkyYqTPRlwL~GYde~~~PLt~~em-----f-----EDIs~Dya~KTVTiE~hPhl 254 (254)
.-.||+.|+||.+||+|.||+..|..+ .|.-.++ | .++.+-= .-||++..||+|
T Consensus 48 ~~~~e~~I~Ys~~YqvPvL~fR~~~~~--~~~~ie~~~~~~~~~~~i~~ll~i~-~~sI~L~~hp~l 111 (152)
T 3vx7_B 48 DTLLELHIYYDHVYHVPSIKFRLWSLD--TEEDISSLRLLTLSDSELRSILNLG-TFSVTLSTDMEM 111 (152)
T ss_dssp TEEEEEEEEECSSSSSEEEEEEEEEEE--ECSSSEEEEECCCCHHHHHHHSCCT-TCCEEEEECTTS
T ss_pred ceEEEEEEEEeccccCceEEEEeecCC--cccchhhheeccCchhhHHHHhccc-ceeEEeeecccc
Confidence 478999999999999999999999876 2322222 2 2322221 478889899975
No 5
>2lpu_A Kmatg10; autophagy, E2-like, proteolysis, protein transport; NMR {Kluyveromyces marxianus}
Probab=93.98 E-value=0.0042 Score=52.00 Aligned_cols=27 Identities=19% Similarity=0.413 Sum_probs=24.9
Q ss_pred eEEEEEEEeeCCCCCceeEEeeecCCC
Q 025314 199 RTYDISITYDKYYQTPRVWLTGYDESR 225 (254)
Q Consensus 199 RtYDL~ITYDkyYqTPRlwL~GYde~~ 225 (254)
=++|+.|+|++.||+|.||+.=|+.++
T Consensus 49 ~~iE~~I~Y~~~YqVP~L~fRlwe~~~ 75 (152)
T 2lpu_A 49 TLLELHIYYDHVYHVPSIKFRLWSLDT 75 (152)
Confidence 478999999999999999999998876
No 6
>1ufn_A Putative nuclear protein homolog 5830484A20RIK; SAND domain, KDWK motif, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.217.1.1
Probab=41.29 E-value=8.3 Score=29.71 Aligned_cols=20 Identities=40% Similarity=0.689 Sum_probs=17.5
Q ss_pred ccCHHHHHHhcccccccCCcee
Q 025314 32 VLSVSEFVLAGDNLVSKCPTWS 53 (254)
Q Consensus 32 ~lTPeEFV~AGD~LV~k~PTW~ 53 (254)
.+||.||+.-|-..-.| .|+
T Consensus 49 w~TP~EFe~~~g~~~sK--dWK 68 (94)
T 1ufn_A 49 WLTVKEFLNEGGRATSK--DWK 68 (94)
T ss_dssp EECHHHHHHHHTCTTCS--CHH
T ss_pred EEChHHhhhhcCccccc--Ccc
Confidence 89999999999988777 675
No 7
>1h5p_A Nuclear autoantigen SP100-B; transcription, DNA binding, SAND domain, KDWK, nuclear protein, alternative splicing; NMR {Homo sapiens} SCOP: d.217.1.1
Probab=39.22 E-value=9.3 Score=29.47 Aligned_cols=20 Identities=35% Similarity=0.632 Sum_probs=17.5
Q ss_pred ccCHHHHHHhcccccccCCcee
Q 025314 32 VLSVSEFVLAGDNLVSKCPTWS 53 (254)
Q Consensus 32 ~lTPeEFV~AGD~LV~k~PTW~ 53 (254)
.+||.||+..|-..-.| -|+
T Consensus 44 w~TP~EFe~~~g~~~sK--dWK 63 (95)
T 1h5p_A 44 WFTPREFEIEGDRGASK--NWK 63 (95)
T ss_dssp EECHHHHHHHHTCSTTC--CHH
T ss_pred EEChHHhhhhcCcccCc--Ccc
Confidence 89999999999987777 676
No 8
>3ndq_A Transcription elongation factor A protein 1; helix bundle; 1.93A {Homo sapiens}
Probab=28.33 E-value=12 Score=29.00 Aligned_cols=35 Identities=6% Similarity=0.019 Sum_probs=23.4
Q ss_pred HHHHHHHHhhhhhhcccCCCCCccccccccCHHHHHH
Q 025314 4 QQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVL 40 (254)
Q Consensus 4 ~~~~~s~~~~~~e~ltPv~~~S~F~etG~lTPeEFV~ 40 (254)
|.+++|.+.++.+.=.|.|+..- -.|.|||++||.
T Consensus 64 k~k~Rsl~fNLKd~kNp~Lr~~v--l~G~isp~~lv~ 98 (108)
T 3ndq_A 64 KNRVRSRISNLKDAKNPNLRKNV--LCGNIPPDLFAR 98 (108)
T ss_dssp HHHHHHHHHHHTCTTCHHHHHHH--HHTSSCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHH--HcCCcCHHHHhC
Confidence 55667777766655555544432 269999999985
No 9
>1oqj_A Glucocorticoid modulatory element binding protein-1; SAND domain, alpha-beta fold, KDWK motif, zinc-binding motif, DNA binding protein; 1.55A {Homo sapiens} SCOP: d.217.1.1
Probab=27.03 E-value=22 Score=27.49 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=17.6
Q ss_pred ccccCHHHHHHhcccccccCCcee
Q 025314 30 KGVLSVSEFVLAGDNLVSKCPTWS 53 (254)
Q Consensus 30 tG~lTPeEFV~AGD~LV~k~PTW~ 53 (254)
...+||.||+..|-..-.| .|+
T Consensus 40 ~~w~TP~EFe~~~gk~~sK--dWK 61 (97)
T 1oqj_A 40 DQLISPKHFVHLAGKSTLK--DWK 61 (97)
T ss_dssp TEEECHHHHHHHTTCGGGS--CHH
T ss_pred CEEEChHHHhhhcCcCCCC--Ccc
Confidence 4689999999998877776 465
No 10
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=23.34 E-value=17 Score=28.37 Aligned_cols=8 Identities=25% Similarity=0.027 Sum_probs=7.0
Q ss_pred CCCeeEEe
Q 025314 68 ADKQFLIT 75 (254)
Q Consensus 68 ~dKQfLvT 75 (254)
++|||||+
T Consensus 96 p~KqFliS 103 (104)
T 1wey_A 96 PDKSGPSS 103 (104)
T ss_dssp CCCCCCCC
T ss_pred cccccccc
Confidence 69999985
No 11
>2dme_A PHD finger protein 3; PHF3, TFS2M, glioblastoma multiforme, brain tumor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.23 E-value=19 Score=28.39 Aligned_cols=35 Identities=9% Similarity=0.110 Sum_probs=24.0
Q ss_pred HHHHHHHHhhhhhhcccCCCCCccccccccCHHHHHH
Q 025314 4 QQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVL 40 (254)
Q Consensus 4 ~~~~~s~~~~~~e~ltPv~~~S~F~etG~lTPeEFV~ 40 (254)
|.++++.+.++.+-=.|.|...- -.|.|||++||.
T Consensus 63 k~k~Rsl~fNLKd~kNp~Lr~~v--l~G~i~p~~lv~ 97 (120)
T 2dme_A 63 KNKYRSLMFNLKDPKNNILFKKV--LKGEVTPDHLIR 97 (120)
T ss_dssp HHHHHHHTHHHHSSSCCSHHHHH--HHTSSCTTHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHH--HcCCCCHHHHhc
Confidence 55677777777665556555433 359999999985
No 12
>1x66_A Friend leukemia integration 1 transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.77 E-value=20 Score=27.35 Aligned_cols=50 Identities=20% Similarity=0.134 Sum_probs=39.4
Q ss_pred HhhhhhhcccCCCCCcc-ccccc----cCHHHHHH-----hcccccccCCceecCCCCCC
Q 025314 11 FKGTVEKITSHRTVSAF-KEKGV----LSVSEFVL-----AGDNLVSKCPTWSWESGEPS 60 (254)
Q Consensus 11 ~~~~~e~ltPv~~~S~F-~etG~----lTPeEFV~-----AGD~LV~k~PTW~W~~g~~~ 60 (254)
.+.+++|=.+...-+.| .-+|. +|-++|+. .||.|-.++--|++++.+++
T Consensus 37 ~W~~~ef~L~~v~~~~F~~m~G~~LC~ls~edF~~~~~~~~GdiL~~hL~~Lk~~~s~~~ 96 (98)
T 1x66_A 37 EWAIKEYSLMEIDTSFFQNMDGKELCKMNKEDFLRATTLYNTEVLLSHLSYLRESSSGPS 96 (98)
T ss_dssp HHHHHHTTCCSCCGGGGTTCCHHHHHHCCHHHHHTTSCHHHHHHHHHHHHHHHTCSSCCC
T ss_pred HHHHHhcCCCCCChhhCCCCCHHHHHcCCHHHHHHHcCCCchHHHHHHHHHHHhcCCCCC
Confidence 35566666676778899 78884 99999976 39999999999999866654
No 13
>2lw4_A Transcription elongation factor A protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=21.37 E-value=24 Score=27.46 Aligned_cols=36 Identities=3% Similarity=0.060 Sum_probs=25.1
Q ss_pred hHHHHHHHHhhhhhhcccCCCCCccccccccCHHHHHH
Q 025314 3 LQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVL 40 (254)
Q Consensus 3 ~~~~~~s~~~~~~e~ltPv~~~S~F~etG~lTPeEFV~ 40 (254)
-|.+++|.+.++.+.=.|.|+..- -.|.|||++||.
T Consensus 59 Yk~k~Rsl~~NLkd~~Np~Lr~~v--l~G~i~p~~l~~ 94 (113)
T 2lw4_A 59 YKNRVRSRISNLKDAKNPDLRRNV--LCGAITPQQIAV 94 (113)
T ss_dssp HHHHHHHHHHHHHCSSSSHHHHHH--HTTSSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHH--HcCCCCHHHHhc
Confidence 356777777777766556554432 369999999985
No 14
>1vqz_A Lipoate-protein ligase, putative; class II AARS and biotin synthetases fold, SUFE/NIFU fold, S genomics; HET: MSE; 1.99A {Streptococcus pneumoniae} SCOP: d.224.1.3 d.104.1.3
Probab=21.28 E-value=39 Score=30.73 Aligned_cols=28 Identities=29% Similarity=0.439 Sum_probs=22.5
Q ss_pred cccCHHHHHHhcccccccCCceecCCCC
Q 025314 31 GVLSVSEFVLAGDNLVSKCPTWSWESGE 58 (254)
Q Consensus 31 G~lTPeEFV~AGD~LV~k~PTW~W~~g~ 58 (254)
+.||++|+-.+-...-.|+-+|.|.-|.
T Consensus 227 ~~lt~~e~~~i~~l~~~ky~s~eW~~g~ 254 (341)
T 1vqz_A 227 YVFSEEELAEINRIKDTKFGTWDWNYGK 254 (341)
T ss_dssp CCCCHHHHHHHHHHHHHTTTCHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCcccccCC
Confidence 8899999987755444599999998763
Done!