Query 025314
Match_columns 254
No_of_seqs 114 out of 214
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 07:51:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025314.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025314hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2diia1 a.240.1.1 (A:8-55) TFI 62.2 1.2 8.6E-05 28.7 0.9 12 29-40 31-42 (48)
2 d1oqja_ d.217.1.1 (A:) Glucoco 41.2 4.5 0.00033 29.1 1.3 24 28-53 34-57 (90)
3 d1h5pa_ d.217.1.1 (A:) Nuclear 40.4 4.1 0.0003 29.6 1.0 23 29-53 40-63 (95)
4 d1wyha1 g.39.1.3 (A:35-66) Fou 38.2 2.8 0.0002 24.8 -0.2 22 58-82 7-28 (32)
5 d1qcrd2 a.3.1.3 (D:167-195) Cy 37.4 6.4 0.00047 22.7 1.3 17 223-239 6-22 (29)
6 d1qk7a_ g.3.6.2 (A:) Lectin SH 29.5 6.3 0.00046 22.9 0.3 6 50-55 21-26 (32)
7 d1wlza1 a.39.1.7 (A:229-311) D 26.7 16 0.0011 24.0 2.1 35 3-41 11-45 (83)
8 d1ufna_ d.217.1.1 (A:) Putativ 26.2 9.2 0.00067 27.6 0.8 20 32-53 49-68 (94)
9 d1snla_ a.39.1.7 (A:) Nucleobi 20.7 13 0.00091 25.5 0.6 21 21-41 73-93 (99)
10 d1x4ka1 g.39.1.3 (A:35-66) Fou 19.5 11 0.00079 22.1 0.0 22 58-82 7-28 (32)
No 1
>d2diia1 a.240.1.1 (A:8-55) TFIIH basal transcription factor complex p62 subunit, BTF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=62.16 E-value=1.2 Score=28.75 Aligned_cols=12 Identities=33% Similarity=0.354 Sum_probs=10.1
Q ss_pred cccccCHHHHHH
Q 025314 29 EKGVLSVSEFVL 40 (254)
Q Consensus 29 etG~lTPeEFV~ 40 (254)
-+||||+|||-+
T Consensus 31 vs~VitseEFWa 42 (48)
T d2diia1 31 VSQVISAEEFWA 42 (48)
T ss_dssp TTTSSCHHHHHH
T ss_pred HhccccHHHHHH
Confidence 379999999964
No 2
>d1oqja_ d.217.1.1 (A:) Glucocorticoid modulatory element binding protein-1 (Gmeb1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.22 E-value=4.5 Score=29.09 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=19.6
Q ss_pred ccccccCHHHHHHhcccccccCCcee
Q 025314 28 KEKGVLSVSEFVLAGDNLVSKCPTWS 53 (254)
Q Consensus 28 ~etG~lTPeEFV~AGD~LV~k~PTW~ 53 (254)
.+...+||.||+.-|..--.| .|+
T Consensus 34 ~~g~w~TP~EFe~~~gk~~sK--~WK 57 (90)
T d1oqja_ 34 FNDQLISPKHFVHLAGKSTLK--DWK 57 (90)
T ss_dssp ETTEEECHHHHHHHTTCGGGS--CHH
T ss_pred ECCEEECHHHHhhhcCccccC--CCc
Confidence 345689999999999988877 665
No 3
>d1h5pa_ d.217.1.1 (A:) Nuclear autoantigen Sp100b {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.42 E-value=4.1 Score=29.62 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=18.1
Q ss_pred ccc-ccCHHHHHHhcccccccCCcee
Q 025314 29 EKG-VLSVSEFVLAGDNLVSKCPTWS 53 (254)
Q Consensus 29 etG-~lTPeEFV~AGD~LV~k~PTW~ 53 (254)
+.| .+||.||+.-|...-.| .|+
T Consensus 40 ~~g~w~TP~EFe~~~Gk~~sK--dWK 63 (95)
T d1h5pa_ 40 EDKKWFTPREFEIEGDRGASK--NWK 63 (95)
T ss_dssp TTTEEECHHHHHHHHTCSTTC--CHH
T ss_pred CCCcEeCHHHHhhccCCcccC--CCc
Confidence 345 89999999999876666 665
No 4
>d1wyha1 g.39.1.3 (A:35-66) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.17 E-value=2.8 Score=24.80 Aligned_cols=22 Identities=27% Similarity=0.685 Sum_probs=16.9
Q ss_pred CCCCCCCCCCCCCeeEEecCCCchh
Q 025314 58 EPSKRKSYLPADKQFLITRNVPCLR 82 (254)
Q Consensus 58 ~~~k~r~yLP~dKQfLvTRnVPC~~ 82 (254)
.|=-.|+|+|++-++. =||||.
T Consensus 7 qPIGtkSFip~~~~~y---CvpCYE 28 (32)
T d1wyha1 7 QPLGSRSFVPDKGAHY---CVPCYE 28 (32)
T ss_dssp CBTTTSCEEEETTEEE---EHHHHH
T ss_pred CcccccccccCCCcEE---EEeccc
Confidence 3456689999999887 478875
No 5
>d1qcrd2 a.3.1.3 (D:167-195) Cytochrome bc1 domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=37.35 E-value=6.4 Score=22.72 Aligned_cols=17 Identities=12% Similarity=0.149 Sum_probs=15.1
Q ss_pred CCCCCCChhhHhhhhcc
Q 025314 223 ESRMLLKTELILEDVSQ 239 (254)
Q Consensus 223 e~~~PLt~~emfEDIs~ 239 (254)
++|.|=|.+||-.||+.
T Consensus 6 ~DGt~at~~q~a~DV~~ 22 (29)
T d1qcrd2 6 DDGTPATMSQVAKDVCT 22 (29)
T ss_pred CCCCcCcHHHHHHHHHH
Confidence 58999999999999964
No 6
>d1qk7a_ g.3.6.2 (A:) Lectin SHL-I {Chinese bird spider (Selenocosmia huwena) [TaxId: 29017]}
Probab=29.52 E-value=6.3 Score=22.85 Aligned_cols=6 Identities=50% Similarity=1.503 Sum_probs=5.3
Q ss_pred CceecC
Q 025314 50 PTWSWE 55 (254)
Q Consensus 50 PTW~W~ 55 (254)
|||+|.
T Consensus 21 ~twkwc 26 (32)
T d1qk7a_ 21 RTWKWC 26 (32)
T ss_dssp SSSCBE
T ss_pred Cceeee
Confidence 699996
No 7
>d1wlza1 a.39.1.7 (A:229-311) DJ-1-binding protein, DJBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.71 E-value=16 Score=23.98 Aligned_cols=35 Identities=11% Similarity=0.197 Sum_probs=22.6
Q ss_pred hHHHHHHHHhhhhhhcccCCCCCccccccccCHHHHHHh
Q 025314 3 LQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLA 41 (254)
Q Consensus 3 ~~~~~~s~~~~~~e~ltPv~~~S~F~etG~lTPeEFV~A 41 (254)
|+.++.+.+..+++.+.-.- -..+|.||.+||.++
T Consensus 11 l~~~i~~~~~~l~~~F~~~D----~~~~G~i~~~ef~~~ 45 (83)
T d1wlza1 11 LHKAVTSHYHAITQEFENFD----TMKTNTISREEFRAI 45 (83)
T ss_dssp HHHHHHHTHHHHHHHHHHHC----TTCSSCBCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHC----CCCCceEChhHHHHH
Confidence 45566666666666553322 235899999999875
No 8
>d1ufna_ d.217.1.1 (A:) Putative nuclear protein homolog 5830484a20rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=26.24 E-value=9.2 Score=27.56 Aligned_cols=20 Identities=40% Similarity=0.689 Sum_probs=15.5
Q ss_pred ccCHHHHHHhcccccccCCcee
Q 025314 32 VLSVSEFVLAGDNLVSKCPTWS 53 (254)
Q Consensus 32 ~lTPeEFV~AGD~LV~k~PTW~ 53 (254)
.+||.||+..|..--.| .|+
T Consensus 49 w~TP~eFe~~~gk~~~K--~WK 68 (94)
T d1ufna_ 49 WLTVKEFLNEGGRATSK--DWK 68 (94)
T ss_dssp EECHHHHHHHHTCTTCS--CHH
T ss_pred EECHHHHHHhcCccccC--CCc
Confidence 79999999998855544 454
No 9
>d1snla_ a.39.1.7 (A:) Nucleobindin 1 (CALNUC) {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.68 E-value=13 Score=25.53 Aligned_cols=21 Identities=10% Similarity=0.194 Sum_probs=16.5
Q ss_pred CCCCCccccccccCHHHHHHh
Q 025314 21 HRTVSAFKEKGVLSVSEFVLA 41 (254)
Q Consensus 21 v~~~S~F~etG~lTPeEFV~A 41 (254)
+.+.-..-..|.||-+||++|
T Consensus 73 ~~~~~D~d~DG~Is~~EF~~~ 93 (99)
T d1snla_ 73 VMKNVDTNQDRLVTLEEFLAS 93 (99)
T ss_dssp HHHHTCSSCSSEEEHHHHHHH
T ss_pred HHHHcCCCCCCcCcHHHHHHH
Confidence 334556677899999999986
No 10
>d1x4ka1 g.39.1.3 (A:35-66) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.45 E-value=11 Score=22.13 Aligned_cols=22 Identities=41% Similarity=0.832 Sum_probs=15.8
Q ss_pred CCCCCCCCCCCCCeeEEecCCCchh
Q 025314 58 EPSKRKSYLPADKQFLITRNVPCLR 82 (254)
Q Consensus 58 ~~~k~r~yLP~dKQfLvTRnVPC~~ 82 (254)
.|=-.|+|+|++-+.. =||||.
T Consensus 7 qPIGtksfipk~~~~y---CvpCyE 28 (32)
T d1x4ka1 7 QPIGTKSFIPKDNQNF---CVPCYE 28 (32)
T ss_dssp CCCCSSSEEEETTEEE---EHHHHH
T ss_pred CcccccccccCCCCce---Eeecch
Confidence 3556689999888765 378875
Done!