BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025315
(254 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1J3I|C Chain C, Wild-Type Plasmodium Falciparum Dihydrofolate Reductase-
Thymidylate Synthase (Pfdhfr-Ts) Complexed With Wr99210,
Nadph, And Dump
pdb|1J3I|D Chain D, Wild-Type Plasmodium Falciparum Dihydrofolate Reductase-
Thymidylate Synthase (Pfdhfr-Ts) Complexed With Wr99210,
Nadph, And Dump
pdb|1J3J|C Chain C, Double Mutant (C59r+s108n) Plasmodium Falciparum
Dihydrofolate Reductase-Thymidylate Synthase (Pfdhfr-Ts)
Complexed With Pyrimethamine, Nadph, And Dump
pdb|1J3J|D Chain D, Double Mutant (C59r+s108n) Plasmodium Falciparum
Dihydrofolate Reductase-Thymidylate Synthase (Pfdhfr-Ts)
Complexed With Pyrimethamine, Nadph, And Dump
pdb|1J3K|C Chain C, Quadruple Mutant (n51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-thymidylate Synthase
(pfdhfr-ts) Complexed With Wr99210, Nadph, And Dump
pdb|1J3K|D Chain D, Quadruple Mutant (n51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-thymidylate Synthase
(pfdhfr-ts) Complexed With Wr99210, Nadph, And Dump
pdb|3DG8|C Chain C, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With Rjf670, Nadph, And Dump
pdb|3DG8|D Chain D, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With Rjf670, Nadph, And Dump
pdb|3DGA|C Chain C, Wild-Type Plasmodium Falciparum Dihydrofolate Reductase-
Thymidylate Synthase (Pfdhfr-Ts) Complexed With
Rjf01302, Nadph, And Dump
pdb|3DGA|D Chain D, Wild-Type Plasmodium Falciparum Dihydrofolate Reductase-
Thymidylate Synthase (Pfdhfr-Ts) Complexed With
Rjf01302, Nadph, And Dump
Length = 328
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/184 (19%), Positives = 70/184 (38%), Gaps = 35/184 (19%)
Query: 74 LRLWEETARRDLFDQKLNRKLVHISI---GLIFMLCWPLFSSGPRGAILASLTPGVNIIR 130
+R+WE R+ D NRKL H + G I+ W F + GV+ ++
Sbjct: 121 VRIWEANGTREFLD---NRKLFHREVNDLGPIYGFQWRHFGAEYTNMYDNYENKGVDQLK 177
Query: 131 MLLVGSGMWKDEATVKSMS----RYGDRRELLTGPL-----YYAITITLACVIYWRNSPN 181
++ + K++ T + + D ++ P +Y L+C++Y R+
Sbjct: 178 NII---NLIKNDPTSRRILLCAWNVKDLDQMALPPCHILCQFYVFDGKLSCIMYQRSCDL 234
Query: 182 GIAAICNLCAGDGFADVVGRRFGKRKLPYNQNKSIAGSCAMASAGFLSSIGSRHQVSSAM 241
G+ N+ + F + IA C + A F+ +G+ H ++ +
Sbjct: 235 GLGVPFNIASYSIFTHM-----------------IAQVCNLQPAQFIHVLGNAHVYNNHI 277
Query: 242 GKQK 245
K
Sbjct: 278 DSLK 281
>pdb|3QGT|A Chain A, Crystal Structure Of Wild-Type Pfdhfr-Ts Complexed With
Nadph, Dump And Pyrimethamine
pdb|3QGT|B Chain B, Crystal Structure Of Wild-Type Pfdhfr-Ts Complexed With
Nadph, Dump And Pyrimethamine
pdb|3UM8|A Chain A, Wild-Type Plasmodium Falciparum Dhfr-Ts Complexed With
Cycloguanil And Nadph
pdb|3UM8|B Chain B, Wild-Type Plasmodium Falciparum Dhfr-Ts Complexed With
Cycloguanil And Nadph
pdb|4DPD|A Chain A, Wild Type Plasmodium Falciparum Dihydrofolate
Reductase-Thymidylate Synthase (Pfdhfr-Ts), Dhf Complex,
Nadp+, Dump
pdb|4DPD|B Chain B, Wild Type Plasmodium Falciparum Dihydrofolate
Reductase-Thymidylate Synthase (Pfdhfr-Ts), Dhf Complex,
Nadp+, Dump
Length = 608
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/184 (19%), Positives = 70/184 (38%), Gaps = 35/184 (19%)
Query: 74 LRLWEETARRDLFDQKLNRKLVHISI---GLIFMLCWPLFSSGPRGAILASLTPGVNIIR 130
+R+WE R+ D NRKL H + G I+ W F + GV+ ++
Sbjct: 401 VRIWEANGTREFLD---NRKLFHREVNDLGPIYGFQWRHFGAEYTNMYDNYENKGVDQLK 457
Query: 131 MLLVGSGMWKDEATVKSMS----RYGDRRELLTGPL-----YYAITITLACVIYWRNSPN 181
++ + K++ T + + D ++ P +Y L+C++Y R+
Sbjct: 458 NII---NLIKNDPTSRRILLCAWNVKDLDQMALPPCHILCQFYVFDGKLSCIMYQRSCDL 514
Query: 182 GIAAICNLCAGDGFADVVGRRFGKRKLPYNQNKSIAGSCAMASAGFLSSIGSRHQVSSAM 241
G+ N+ + F + IA C + A F+ +G+ H ++ +
Sbjct: 515 GLGVPFNIASYSIFTHM-----------------IAQVCNLQPAQFIHVLGNAHVYNNHI 557
Query: 242 GKQK 245
K
Sbjct: 558 DSLK 561
>pdb|3UM5|A Chain A, Double Mutant (A16v+s108t) Plasmodium Falciparum
Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts-T994) COMPLEXED WITH Pyrimethamine, Nadph,
And Dump
pdb|3UM5|B Chain B, Double Mutant (A16v+s108t) Plasmodium Falciparum
Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts-T994) COMPLEXED WITH Pyrimethamine, Nadph,
And Dump
pdb|3UM6|A Chain A, Double Mutant (A16v+s108t) Plasmodium Falciparum Dhfr-Ts
(T994) Complexed With Cycloguanil, Nadph And Dump
pdb|3UM6|B Chain B, Double Mutant (A16v+s108t) Plasmodium Falciparum Dhfr-Ts
(T994) Complexed With Cycloguanil, Nadph And Dump
Length = 608
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/184 (19%), Positives = 70/184 (38%), Gaps = 35/184 (19%)
Query: 74 LRLWEETARRDLFDQKLNRKLVHISI---GLIFMLCWPLFSSGPRGAILASLTPGVNIIR 130
+R+WE R+ D NRKL H + G I+ W F + GV+ ++
Sbjct: 401 VRIWEANGTREFLD---NRKLFHREVNDLGPIYGFQWRHFGAEYTNMYDNYENKGVDQLK 457
Query: 131 MLLVGSGMWKDEATVKSMS----RYGDRRELLTGPL-----YYAITITLACVIYWRNSPN 181
++ + K++ T + + D ++ P +Y L+C++Y R+
Sbjct: 458 NII---NLIKNDPTSRRILLCAWNVKDLDQMALPPCHILCQFYVFDGKLSCIMYQRSCDL 514
Query: 182 GIAAICNLCAGDGFADVVGRRFGKRKLPYNQNKSIAGSCAMASAGFLSSIGSRHQVSSAM 241
G+ N+ + F + IA C + A F+ +G+ H ++ +
Sbjct: 515 GLGVPFNIASYSIFTHM-----------------IAQVCNLQPAQFIHVLGNAHVYNNHI 557
Query: 242 GKQK 245
K
Sbjct: 558 DSLK 561
>pdb|3JSU|A Chain A, Quadruple Mutant(N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate
Synthase(Pfdhfr-Ts) Complexed With Qn254, Nadph, And
Dump
pdb|3JSU|B Chain B, Quadruple Mutant(N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate
Synthase(Pfdhfr-Ts) Complexed With Qn254, Nadph, And
Dump
pdb|3QG2|A Chain A, Plasmodium Falciparum Dhfr-Ts Qradruple Mutant
(N51i+c59r+s108n+i164l, V1S) PYRIMETHAMINE COMPLEX
pdb|3QG2|B Chain B, Plasmodium Falciparum Dhfr-Ts Qradruple Mutant
(N51i+c59r+s108n+i164l, V1S) PYRIMETHAMINE COMPLEX
pdb|4DP3|A Chain A, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With P218 And Nadph
pdb|4DP3|B Chain B, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With P218 And Nadph
pdb|4DPH|A Chain A, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With P65 And Nadph
pdb|4DPH|B Chain B, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With P65 And Nadph
Length = 608
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/184 (19%), Positives = 70/184 (38%), Gaps = 35/184 (19%)
Query: 74 LRLWEETARRDLFDQKLNRKLVHISI---GLIFMLCWPLFSSGPRGAILASLTPGVNIIR 130
+R+WE R+ D NRKL H + G I+ W F + GV+ ++
Sbjct: 401 VRIWEANGTREFLD---NRKLFHREVNDLGPIYGFQWRHFGAEYTNMYDNYENKGVDQLK 457
Query: 131 MLLVGSGMWKDEATVKSMS----RYGDRRELLTGPL-----YYAITITLACVIYWRNSPN 181
++ + K++ T + + D ++ P +Y L+C++Y R+
Sbjct: 458 NII---NLIKNDPTSRRILLCAWNVKDLDQMALPPCHILCQFYVFDGKLSCIMYQRSCDL 514
Query: 182 GIAAICNLCAGDGFADVVGRRFGKRKLPYNQNKSIAGSCAMASAGFLSSIGSRHQVSSAM 241
G+ N+ + F + IA C + A F+ +G+ H ++ +
Sbjct: 515 GLGVPFNIASYSIFTHM-----------------IAQVCNLQPAQFIHVLGNAHVYNNHI 557
Query: 242 GKQK 245
K
Sbjct: 558 DSLK 561
>pdb|3S5N|A Chain A, Crystal Structure Of Human 4-Hydroxy-2-Oxoglutarate
Aldolase
Length = 304
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 107 WPLFSSGPRGAILASLTPGVNIIRMLLVGSGMWKDEATVK---SMSRYGDRRELLTGPLY 163
+P +S R +++ + + R+LL GSG +ATV+ SM++ G ++ P Y
Sbjct: 58 FPFLTSSERLEVVSRVRQAMPKNRLLLAGSGCESTQATVEMTVSMAQVGADAAMVVTPCY 117
Query: 164 YAITITLACVIY 175
Y ++ A +I+
Sbjct: 118 YRGRMSSAALIH 129
>pdb|3S5O|A Chain A, Crystal Structure Of Human 4-Hydroxy-2-Oxoglutarate
Aldolase Bound To Pyruvate
Length = 307
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 107 WPLFSSGPRGAILASLTPGVNIIRMLLVGSGMWKDEATVK---SMSRYGDRRELLTGPLY 163
+P +S R +++ + + R+LL GSG +ATV+ SM++ G ++ P Y
Sbjct: 61 FPFLTSSERLEVVSRVRQAMPKNRLLLAGSGCESTQATVEMTVSMAQVGADAAMVVTPCY 120
Query: 164 YAITITLACVIY 175
Y ++ A +I+
Sbjct: 121 YRGRMSSAALIH 132
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,018,698
Number of Sequences: 62578
Number of extensions: 215299
Number of successful extensions: 407
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 407
Number of HSP's gapped (non-prelim): 6
length of query: 254
length of database: 14,973,337
effective HSP length: 97
effective length of query: 157
effective length of database: 8,903,271
effective search space: 1397813547
effective search space used: 1397813547
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)