Query 025315
Match_columns 254
No_of_seqs 187 out of 1061
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 04:36:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025315.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025315hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4453 Predicted ER membrane 100.0 9.8E-29 2.1E-33 215.5 10.2 164 54-247 60-225 (269)
2 COG0170 SEC59 Dolichol kinase 99.8 2.3E-19 4.9E-24 158.2 12.1 150 86-238 15-172 (216)
3 PF01148 CTP_transf_1: Cytidyl 99.7 1E-16 2.2E-21 141.6 14.8 165 62-239 23-190 (259)
4 KOG2468 Dolichol kinase [Lipid 99.7 4E-16 8.6E-21 148.1 11.4 169 58-234 281-463 (510)
5 PRK11624 cdsA CDP-diglyceride 99.3 4.9E-11 1.1E-15 109.3 15.0 51 186-236 158-210 (285)
6 COG0575 CdsA CDP-diglyceride s 99.0 1.2E-08 2.7E-13 92.4 15.3 80 159-238 109-194 (265)
7 PLN02953 phosphatidate cytidyl 98.9 9.9E-08 2.1E-12 90.6 16.3 49 189-237 278-327 (403)
8 PLN02594 phosphatidate cytidyl 98.8 1.4E-08 3E-13 95.0 9.0 61 183-243 128-189 (342)
9 KOG1440 CDP-diacylglycerol syn 97.9 0.00013 2.9E-09 69.7 11.7 65 183-247 223-288 (432)
10 COG4589 Predicted CDP-diglycer 97.8 0.0011 2.4E-08 59.9 15.5 55 191-246 185-241 (303)
11 PRK04032 hypothetical protein; 97.0 0.00074 1.6E-08 57.2 3.6 36 200-236 23-59 (159)
12 TIGR00297 conserved hypothetic 93.3 2.1 4.6E-05 38.6 12.4 50 184-233 116-175 (237)
13 PF01940 DUF92: Integral membr 92.2 2.4 5.2E-05 38.0 11.2 54 184-237 111-174 (226)
14 COG1836 Predicted membrane pro 91.2 11 0.00025 34.1 16.4 47 188-234 129-185 (247)
15 PF01864 DUF46: Putative integ 87.3 0.47 1E-05 40.9 2.6 33 200-233 34-67 (175)
16 KOG1608 Protein transporter of 71.1 40 0.00087 31.8 9.5 31 78-109 182-212 (374)
17 PF01554 MatE: MatE; InterPro 52.5 39 0.00085 26.7 5.5 25 185-209 42-66 (162)
18 KOG2447 Oligosaccharyltransfer 29.3 2.5E+02 0.0054 26.1 7.3 47 56-103 198-246 (287)
19 KOG4142 Phospholipid methyltra 27.4 3.6E+02 0.0077 23.4 7.4 91 119-226 64-161 (208)
20 PF14126 DUF4293: Domain of un 26.2 1.9E+02 0.0042 24.0 5.6 12 139-150 137-148 (149)
21 COG3302 DmsC DMSO reductase an 25.5 5.5E+02 0.012 23.9 13.0 86 143-233 67-160 (281)
22 PF11992 DUF3488: Domain of un 25.1 5.5E+02 0.012 23.7 14.6 56 183-240 125-180 (325)
23 COG0586 DedA Uncharacterized m 24.4 35 0.00076 29.8 0.9 24 185-208 63-86 (208)
24 PF11241 DUF3043: Protein of u 22.8 1.5E+02 0.0032 25.6 4.3 62 159-224 77-148 (170)
No 1
>KOG4453 consensus Predicted ER membrane protein [Function unknown]
Probab=99.95 E-value=9.8e-29 Score=215.53 Aligned_cols=164 Identities=32% Similarity=0.567 Sum_probs=143.9
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHhccccCCccchhHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHH
Q 025315 54 NPVLSDVCASAVSAAVAASCLRLWEETARRDLFDQKLNRKLVHISIGLIFMLCWPLFSSGPRGAILASLTPGVNIIRMLL 133 (254)
Q Consensus 54 ~~~~~d~~~~~~~~~~~~~~l~~~e~l~~r~~~~~e~~RKlvHi~~Glv~~l~~~~f~~~~~~~~la~l~~~l~~lr~~~ 133 (254)
+.+.||++..+....+.+.++.+++...++..+++.+.||++|+..|.++.+.||+|+ |+..
T Consensus 60 ns~kheiprkv~hssigf~~l~l~g~g~kr~~i~~~Li~kfi~ifigdlirlnWP~Fs------------------rLy~ 121 (269)
T KOG4453|consen 60 NSLKHEIPRKVAHSSIGFALLLLFGSGTKRNVIQQSLIRKFIHIFIGDLIRLNWPIFS------------------RLYI 121 (269)
T ss_pred hhhhhhhchhHhhhhHHHHHHHHHhcccchhhhhHHHHHHHHHHHHhHHHHhccHHHH------------------HHHH
Confidence 6789999999999999999999999999999999999999999999999999999886 3333
Q ss_pred hhcccccchhhhhhcccccccccccchhHHHHHHHHHHHHHHhcCCchHHHHHHHHHhchhhhhhhccccCccccCCCCC
Q 025315 134 VGSGMWKDEATVKSMSRYGDRRELLTGPLYYAITITLACVIYWRNSPNGIAAICNLCAGDGFADVVGRRFGKRKLPYNQN 213 (254)
Q Consensus 134 ~gl~~~~~~~~i~~~~R~~e~~~~l~G~lyy~l~~~l~~~lfw~~~pi~i~aIl~L~~GDg~AalVG~~fGr~klp~~~~ 213 (254)
.+++...++ ++| +.++|++||.+++.....+||.+.|++.+.++.+| |+.|++||||||+.|.|++++
T Consensus 122 r~lg~lmre-----~er-----hl~nGvLfYvLgl~fs~~ff~kespi~s~~Llswc--Dt~AdtvGRKfG~~tpk~akn 189 (269)
T KOG4453|consen 122 RGLGILMRE-----VER-----HLLNGVLFYVLGLLFSAVFFWKESPIGSISLLSWC--DTIADTVGRKFGSTTPKYAKN 189 (269)
T ss_pred hcccccchH-----HHH-----HHhcchHHHHHHHHHHhhccccccHHHHHHHHHHh--hhHHHHHhhhccccCCCcCCC
Confidence 334433322 332 36799999999999999999999988877777766 999999999999999999999
Q ss_pred CceehhHHHHHHHHHHHHHHHHhhhccc--hhhhhh
Q 025315 214 KSIAGSCAMASAGFLSSIGSRHQVSSAM--GKQKKI 247 (254)
Q Consensus 214 KS~EGSla~fv~s~l~~~~~l~~f~~~g--~~~~~~ 247 (254)
|||+||++||.+++.+++.+++||.+.| ++|..+
T Consensus 190 KSlAGSIgaft~Gvf~c~vy~gyf~s~g~~~l~~s~ 225 (269)
T KOG4453|consen 190 KSLAGSIGAFTFGVFICIVYLGYFSSLGPDYLHMSW 225 (269)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHhccCcchhcccc
Confidence 9999999999999999999999999999 888765
No 2
>COG0170 SEC59 Dolichol kinase [Lipid metabolism]
Probab=99.81 E-value=2.3e-19 Score=158.20 Aligned_cols=150 Identities=25% Similarity=0.355 Sum_probs=98.2
Q ss_pred cCCccchhHHHHHHHHHHHHHHhhccccHHHHHH---HHHHHH--HHHHHHHHhhcc---cccchhhhhhcccccccccc
Q 025315 86 FDQKLNRKLVHISIGLIFMLCWPLFSSGPRGAIL---ASLTPG--VNIIRMLLVGSG---MWKDEATVKSMSRYGDRREL 157 (254)
Q Consensus 86 ~~~e~~RKlvHi~~Glv~~l~~~~f~~~~~~~~l---a~l~~~--l~~lr~~~~gl~---~~~~~~~i~~~~R~~e~~~~ 157 (254)
.+.|+.||.+|+..+.+..+ . ..........+ ..++.. ++..|....+.. .....+.....+|+.|++..
T Consensus 15 ~~~~~~rk~~hi~~~~l~~~-~-~~~~~~~~~~~~~i~~~i~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~e~~~~ 92 (216)
T COG0170 15 TRLEVRRKLLHISGGLLFLL-Y-ILRDKFAIILFLLILLIILLLEFELFRLLIPGLEGKVTLLLSELLSLIEREREKNGP 92 (216)
T ss_pred hHHHHHHHHHHHHHHHHHHH-H-HhhccHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhhHHHhcCC
Confidence 45778999999977766543 2 33332211111 111111 233332211100 00123566778888776542
Q ss_pred cchhHHHHHHHHHHHHHHhcCCchHHHHHHHHHhchhhhhhhccccCccccCCCCCCceehhHHHHHHHHHHHHHHHHhh
Q 025315 158 LTGPLYYAITITLACVIYWRNSPNGIAAICNLCAGDGFADVVGRRFGKRKLPYNQNKSIAGSCAMASAGFLSSIGSRHQV 237 (254)
Q Consensus 158 l~G~lyy~l~~~l~~~lfw~~~pi~i~aIl~L~~GDg~AalVG~~fGr~klp~~~~KS~EGSla~fv~s~l~~~~~l~~f 237 (254)
..|..+|..+..++..+++ +.+.+.++|++|++||++|+++|++|||||.+.+++||+|||++||++++++++++..+.
T Consensus 93 ~~g~~~~~~~~~i~~~~lf-~~~~~~~~I~~l~~GD~lAsiiG~~~G~~~~~~~~~KSleGSla~fi~~~l~~~~~~~~~ 171 (216)
T COG0170 93 GLGGIIYFIGGGLLASLLF-PIEVAIAGILVLALGDGLASIIGKRYGRHKRILGNGKSLEGSLAFFIASFLVLLVLYGYL 171 (216)
T ss_pred CcCcHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHhhHHHHHhCcccCccccccCCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 3466667666666655443 446778999999999999999999999998888999999999999999999998766554
Q ss_pred h
Q 025315 238 S 238 (254)
Q Consensus 238 ~ 238 (254)
.
T Consensus 172 ~ 172 (216)
T COG0170 172 G 172 (216)
T ss_pred H
Confidence 3
No 3
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=99.72 E-value=1e-16 Score=141.65 Aligned_cols=165 Identities=24% Similarity=0.296 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCccchhHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 025315 62 ASAVSAAVAASCLRLWEETARRDLFDQKLNRKLVHISIGLIFMLCWPLFSSGPRGAILASLTPGVNIIRMLLVGSGMWKD 141 (254)
Q Consensus 62 ~~~~~~~~~~~~l~~~e~l~~r~~~~~e~~RKlvHi~~Glv~~l~~~~f~~~~~~~~la~l~~~l~~lr~~~~gl~~~~~ 141 (254)
.....++.++..+...|+.+......++..++..|+.................................+... .
T Consensus 23 ~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~ 96 (259)
T PF01148_consen 23 WYFLLLVAVIIFLGFWELFRLFRIKSRSKFRLIIRILSWIFFLILFLFFYLRWLIPYFFATILIIALLLFLVL------G 96 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccccchhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHhhh------c
Confidence 3444556667777788988877776777777777775554443333322222222222222222222222110 0
Q ss_pred hhhhhhccccccc-ccccchhHHHHHHHHHHHHHHhc-CCchHHHHHHHHHhchhhhhhhccccCccccC-CCCCCceeh
Q 025315 142 EATVKSMSRYGDR-RELLTGPLYYAITITLACVIYWR-NSPNGIAAICNLCAGDGFADVVGRRFGKRKLP-YNQNKSIAG 218 (254)
Q Consensus 142 ~~~i~~~~R~~e~-~~~l~G~lyy~l~~~l~~~lfw~-~~pi~i~aIl~L~~GDg~AalVG~~fGr~klp-~~~~KS~EG 218 (254)
+++.++ .....+.+|.++.+.......+. +.+..+.+++++++||++|+++|++||||+.| .+|+|||||
T Consensus 97 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~gD~~A~l~G~~fGk~~~~~~sp~KT~EG 169 (259)
T PF01148_consen 97 -------ERRIRRIISTLFGLIYFGIFLLLLLIFFWFFGPPLALIGILILGIGDSFAYLVGRRFGKHLAPKISPKKTWEG 169 (259)
T ss_pred -------chHHHHHHHHHHHHHHHhHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCCCCCHHH
Confidence 111111 11123334433333122222232 44556689999999999999999999999555 799999999
Q ss_pred hHHHHHHHHHHHHHHHHhhhc
Q 025315 219 SCAMASAGFLSSIGSRHQVSS 239 (254)
Q Consensus 219 Sla~fv~s~l~~~~~l~~f~~ 239 (254)
|++|++++++++.++..+++.
T Consensus 170 si~~~i~~~i~~~~~~~~~~~ 190 (259)
T PF01148_consen 170 SIAGFISSFIISFLLLYYLSS 190 (259)
T ss_pred HhHHHHHHHHHHHHHHHHhcc
Confidence 999999999999988776654
No 4
>KOG2468 consensus Dolichol kinase [Lipid transport and metabolism]
Probab=99.66 E-value=4e-16 Score=148.09 Aligned_cols=169 Identities=22% Similarity=0.291 Sum_probs=103.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccccCCccchhHHHHHHHHHHHHHHhhccccHHHHH---HHHHHHHHHHHHHHH-
Q 025315 58 SDVCASAVSAAVAASCLRLWEETARRDLFDQKLNRKLVHISIGLIFMLCWPLFSSGPRGAI---LASLTPGVNIIRMLL- 133 (254)
Q Consensus 58 ~d~~~~~~~~~~~~~~l~~~e~l~~r~~~~~e~~RKlvHi~~Glv~~l~~~~f~~~~~~~~---la~l~~~l~~lr~~~- 133 (254)
|.-+.+.+++..+.+++.......+..+.++...||++|..+-+.+.- -..++.+..-+. ..+++..+|++|+..
T Consensus 281 Rl~ili~W~lllvls~~svl~q~~sSs~~~~t~~RK~~HlliV~l~iP-~li~d~~fL~lA~s~~LavFl~lE~IR~~ri 359 (510)
T KOG2468|consen 281 RLKILIYWSLLLVLSILSVLYQIDSSSKLNETTSRKYFHLLIVLLYIP-GLIFDPNFLYLAFSGALAVFLFLEYIRFLRI 359 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccchhhhhHHHHHHHHHHHHHHHHhh-HHhcCchhHHHHHhhHHHHHHHHHHHHHhcC
Confidence 444445555555555444444333333334458899999865443321 123455432222 234566789999742
Q ss_pred hhcccccchhhhhhccccccccc---ccchhHHHHHHHHHHHHHHhcCCch-------HHHHHHHHHhchhhhhhhcccc
Q 025315 134 VGSGMWKDEATVKSMSRYGDRRE---LLTGPLYYAITITLACVIYWRNSPN-------GIAAICNLCAGDGFADVVGRRF 203 (254)
Q Consensus 134 ~gl~~~~~~~~i~~~~R~~e~~~---~l~G~lyy~l~~~l~~~lfw~~~pi-------~i~aIl~L~~GDg~AalVG~~f 203 (254)
..++ +.+-..+.|..|.|+ +....+|.-+++.+-+++- +.|. -..+++.+++||++|+++|+||
T Consensus 360 ~PlG----~~l~~fl~~F~DeRDsGpLIiSh~yLLiGcslPIWms--~~p~~~~ral~~laGiLalGiGDTmASiiG~r~ 433 (510)
T KOG2468|consen 360 PPLG----SALHLFLSRFTDERDSGPLIISHFYLLIGCSLPIWMS--NSPCGGDRALALLAGILALGIGDTMASIIGKRY 433 (510)
T ss_pred CCch----HHHHHHHHHhcccccCCceeHHHHHHHHhcccchhcc--CCCCCchhhhhhhhhheeeccchHHHHHHhhhh
Confidence 1111 122233444444443 3344456666655544432 3332 2378999999999999999999
Q ss_pred CccccCCCCCCceehhHHHHHHHHHHHHHHH
Q 025315 204 GKRKLPYNQNKSIAGSCAMASAGFLSSIGSR 234 (254)
Q Consensus 204 Gr~klp~~~~KS~EGSla~fv~s~l~~~~~l 234 (254)
||+||+ +.+||+||++|+.+..++++.+..
T Consensus 434 G~~RW~-~TkKTlEGT~Afivs~~iv~~ll~ 463 (510)
T KOG2468|consen 434 GRIRWS-GTKKTLEGTLAFIVSSFIVCLLLL 463 (510)
T ss_pred cceecC-CCcceeehhhHHHHHHHHHHHHHH
Confidence 999998 569999999999999999988765
No 5
>PRK11624 cdsA CDP-diglyceride synthase; Provisional
Probab=99.31 E-value=4.9e-11 Score=109.34 Aligned_cols=51 Identities=24% Similarity=0.199 Sum_probs=43.5
Q ss_pred HHHHHhchhhhhhhccccCcccc-C-CCCCCceehhHHHHHHHHHHHHHHHHh
Q 025315 186 ICNLCAGDGFADVVGRRFGKRKL-P-YNQNKSIAGSCAMASAGFLSSIGSRHQ 236 (254)
Q Consensus 186 Il~L~~GDg~AalVG~~fGr~kl-p-~~~~KS~EGSla~fv~s~l~~~~~l~~ 236 (254)
++....+|+.|+++||++||||+ | .||||||||++++++.+.+++.++..+
T Consensus 158 ~~~vw~sDt~AYf~Gr~fGk~KL~P~ISPkKTwEG~iGg~~~~~~~~~~~~~~ 210 (285)
T PRK11624 158 MILVWGADSGAYMFGKLFGKHKLAPKVSPGKTWEGFIGGLATAAVISWLFGMW 210 (285)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCcCCCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 33344599999999999999997 6 799999999999999999988776443
No 6
>COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism]
Probab=99.01 E-value=1.2e-08 Score=92.40 Aligned_cols=80 Identities=28% Similarity=0.240 Sum_probs=57.5
Q ss_pred chhHHHHHHHHHHHHHHhcC----CchHHHHHHHHHhchhhhhhhccccCcccc-C-CCCCCceehhHHHHHHHHHHHHH
Q 025315 159 TGPLYYAITITLACVIYWRN----SPNGIAAICNLCAGDGFADVVGRRFGKRKL-P-YNQNKSIAGSCAMASAGFLSSIG 232 (254)
Q Consensus 159 ~G~lyy~l~~~l~~~lfw~~----~pi~i~aIl~L~~GDg~AalVG~~fGr~kl-p-~~~~KS~EGSla~fv~s~l~~~~ 232 (254)
.+..|++..+......++.. ..+.....+....+|.+|+++||++||||+ | .+|+|||||.+++++.+.+++..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~l~~~vw~~Di~Ayf~Gr~fGk~kl~p~iSP~KT~eGfigG~~~~~~v~~~ 188 (265)
T COG0575 109 FGLLYVGVGLLALLPFRLGVLYSGLILLLLLFLGVWAGDIGAYFVGRRFGKHKLAPKISPKKTWEGFIGGALGAVLVAVL 188 (265)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHcCCCCCCCcCCCCCchHHhHHHHHHHHHHHHH
Confidence 46777777665444433211 112233444455699999999999999995 6 79999999999999999888887
Q ss_pred HHHhhh
Q 025315 233 SRHQVS 238 (254)
Q Consensus 233 ~l~~f~ 238 (254)
+..+.+
T Consensus 189 ~~~~~~ 194 (265)
T COG0575 189 VIFLLS 194 (265)
T ss_pred HHHHHh
Confidence 665554
No 7
>PLN02953 phosphatidate cytidylyltransferase
Probab=98.87 E-value=9.9e-08 Score=90.56 Aligned_cols=49 Identities=22% Similarity=0.278 Sum_probs=41.9
Q ss_pred HHhchhhhhhhccccCccccC-CCCCCceehhHHHHHHHHHHHHHHHHhh
Q 025315 189 LCAGDGFADVVGRRFGKRKLP-YNQNKSIAGSCAMASAGFLSSIGSRHQV 237 (254)
Q Consensus 189 L~~GDg~AalVG~~fGr~klp-~~~~KS~EGSla~fv~s~l~~~~~l~~f 237 (254)
...+|.+|+++|+++||||+. +||+|||||.+++++.+.+++.++..++
T Consensus 278 vw~~Di~AY~~G~~fGk~kl~~ISPkKTwEG~iGGil~~vlv~~l~~~~l 327 (403)
T PLN02953 278 VIATDTFAFLGGKAFGRTPLTSISPKKTWEGTFVGLVGCIAITILLSKSL 327 (403)
T ss_pred HHHHHHHHHHHHHHhCCCCCCcCCCCCeeeeehhHHHHHHHHHHHHHHHH
Confidence 335999999999999999985 7999999999999999988887664433
No 8
>PLN02594 phosphatidate cytidylyltransferase
Probab=98.83 E-value=1.4e-08 Score=95.01 Aligned_cols=61 Identities=15% Similarity=0.101 Sum_probs=51.1
Q ss_pred HHHHHHHHhchhhhhhhccccCccccC-CCCCCceehhHHHHHHHHHHHHHHHHhhhccchh
Q 025315 183 IAAICNLCAGDGFADVVGRRFGKRKLP-YNQNKSIAGSCAMASAGFLSSIGSRHQVSSAMGK 243 (254)
Q Consensus 183 i~aIl~L~~GDg~AalVG~~fGr~klp-~~~~KS~EGSla~fv~s~l~~~~~l~~f~~~g~~ 243 (254)
...+.....+|.+|+++|+.+||||+. .||||||||.+++++++.+.+.++..+++...++
T Consensus 128 ~l~~~lV~~nDi~AY~~G~~fGk~kL~~iSPkKTwEGfiGg~i~T~i~~~~~~~~~~~~~~~ 189 (342)
T PLN02594 128 LLPASLIVINDIAAYLFGFFFGRTPLIKLSPKKTWEGFIGASVTTLISAFYLANIMGKFQWL 189 (342)
T ss_pred HHHHHHHHHHhHHHHHHHHHhcCCCCCccCCCCchhhhHHHHHHHHHHHHHHHHHhcccccc
Confidence 345555667999999999999999974 7999999999999999999999887766555444
No 9
>KOG1440 consensus CDP-diacylglycerol synthase [Lipid transport and metabolism]
Probab=97.90 E-value=0.00013 Score=69.68 Aligned_cols=65 Identities=17% Similarity=0.061 Sum_probs=50.5
Q ss_pred HHHHHHHHhchhhhhhhccccCcccc-CCCCCCceehhHHHHHHHHHHHHHHHHhhhccchhhhhh
Q 025315 183 IAAICNLCAGDGFADVVGRRFGKRKL-PYNQNKSIAGSCAMASAGFLSSIGSRHQVSSAMGKQKKI 247 (254)
Q Consensus 183 i~aIl~L~~GDg~AalVG~~fGr~kl-p~~~~KS~EGSla~fv~s~l~~~~~l~~f~~~g~~~~~~ 247 (254)
+++......||-+|+++|..+||+++ ..+++|||||-+|+.++.++.+.++.....+.-+...++
T Consensus 223 l~P~~lvicnDi~AY~~Gf~fGktPLiklSPKKTwEGFiGg~~~tvv~~i~~s~vL~~~~~~~cp~ 288 (432)
T KOG1440|consen 223 LVPAGLVICNDIFAYLFGFFFGKTPLIKLSPKKTWEGFIGGTFGTVVFGILFSYVLGHYTFFTCPV 288 (432)
T ss_pred HHHhHhheeCchHHHHHhhhhcCCcccccCCCCccchhhchhHHHHHHHHHHHHHhccCeEEEecc
Confidence 35555566799999999999999886 579999999999998888777777766655555544433
No 10
>COG4589 Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only]
Probab=97.82 E-value=0.0011 Score=59.88 Aligned_cols=55 Identities=25% Similarity=0.265 Sum_probs=47.7
Q ss_pred hchhhhhhhccccCcccc-C-CCCCCceehhHHHHHHHHHHHHHHHHhhhccchhhhh
Q 025315 191 AGDGFADVVGRRFGKRKL-P-YNQNKSIAGSCAMASAGFLSSIGSRHQVSSAMGKQKK 246 (254)
Q Consensus 191 ~GDg~AalVG~~fGr~kl-p-~~~~KS~EGSla~fv~s~l~~~~~l~~f~~~g~~~~~ 246 (254)
.+|-+-++-|+.|||||+ | .+|+||+||-+++.+.+.+++.++. ++.++...|..
T Consensus 185 ~nDV~QYvwGk~fGk~Ki~P~vSPnKTveGl~GGilt~~~~~~~l~-~lTp~~~lqa~ 241 (303)
T COG4589 185 LNDVAQYVWGKSFGKRKIVPKVSPNKTVEGLIGGILTTMIASAILG-LLTPLNTLQAL 241 (303)
T ss_pred HHHHHHHHHhhhcCCcccCCCcCCcchHHHHhhhHHHHHHHHHHHH-HhCCCcHHHHH
Confidence 799999999999999997 6 7999999999999999999888755 77777666644
No 11
>PRK04032 hypothetical protein; Provisional
Probab=96.97 E-value=0.00074 Score=57.20 Aligned_cols=36 Identities=19% Similarity=0.257 Sum_probs=29.2
Q ss_pred cccc-CccccCCCCCCceehhHHHHHHHHHHHHHHHHh
Q 025315 200 GRRF-GKRKLPYNQNKSIAGSCAMASAGFLSSIGSRHQ 236 (254)
Q Consensus 200 G~~f-Gr~klp~~~~KS~EGSla~fv~s~l~~~~~l~~ 236 (254)
|+++ +.+|+ .||+|||||.+++++.+.+.+.++...
T Consensus 23 g~~~~dg~~i-iSP~KTwEG~iGGv~~~~l~~~~~~~~ 59 (159)
T PRK04032 23 GKTFVDGRRI-LGDGKTWRGLIGGILFGTLVGLIQNLL 59 (159)
T ss_pred CCcCCCCCee-CCCCCcHHHhHHHHHHHHHHHHHHHHH
Confidence 7788 44555 589999999999999999998877543
No 12
>TIGR00297 conserved hypothetical protein TIGR00297.
Probab=93.26 E-value=2.1 Score=38.58 Aligned_cols=50 Identities=18% Similarity=0.262 Sum_probs=38.9
Q ss_pred HHHHHHHhchhhhhhhccccCccc--------cC--CCCCCceehhHHHHHHHHHHHHHH
Q 025315 184 AAICNLCAGDGFADVVGRRFGKRK--------LP--YNQNKSIAGSCAMASAGFLSSIGS 233 (254)
Q Consensus 184 ~aIl~L~~GDg~AalVG~~fGr~k--------lp--~~~~KS~EGSla~fv~s~l~~~~~ 233 (254)
++-+.-+-+|+.|+=+|..++++. .| -|+.=|++|+++.++.+++++...
T Consensus 116 ~~s~A~a~aDT~ASEiG~ls~~~p~lItt~k~V~~GT~GgVS~~Gt~As~~Ga~~I~~~~ 175 (237)
T TIGR00297 116 VASVATALSDTMASEIGKAYGKNPRLITTLQRVEPGTDGAISVEGTLAGFAGALAIALLG 175 (237)
T ss_pred HHHHHHHHcchHHHhhhhccCCCCeEeecCccCCCCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 445555679999999999998732 22 266779999999999999988543
No 13
>PF01940 DUF92: Integral membrane protein DUF92; InterPro: IPR002794 Many members of this family have no known function and are predicted to be integral membrane proteins.; GO: 0016021 integral to membrane
Probab=92.16 E-value=2.4 Score=37.97 Aligned_cols=54 Identities=15% Similarity=0.083 Sum_probs=41.1
Q ss_pred HHHHHHHhchhhhhhhccccCcccc--------C--CCCCCceehhHHHHHHHHHHHHHHHHhh
Q 025315 184 AAICNLCAGDGFADVVGRRFGKRKL--------P--YNQNKSIAGSCAMASAGFLSSIGSRHQV 237 (254)
Q Consensus 184 ~aIl~L~~GDg~AalVG~~fGr~kl--------p--~~~~KS~EGSla~fv~s~l~~~~~l~~f 237 (254)
++-+.-+-+|+.|+=+|..++++.. | -|+.=|++|+++.++.+++++.......
T Consensus 111 ~~s~A~a~aDTwASEiG~ls~~~P~lItt~k~V~~Gt~GgVS~lGt~as~~Ga~~Ia~~~~~~~ 174 (226)
T PF01940_consen 111 LGSIAAANADTWASEIGVLSKGPPRLITTFKRVPPGTSGGVSLLGTLASLAGALLIALVAFLLG 174 (226)
T ss_pred HHHHHHHhhhHHHHhhhhhcCCCCeEeeCCcCCCCCCCCeechHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556799999999999876431 1 2556699999999999999988765443
No 14
>COG1836 Predicted membrane protein [Function unknown]
Probab=91.21 E-value=11 Score=34.09 Aligned_cols=47 Identities=26% Similarity=0.457 Sum_probs=37.9
Q ss_pred HHHhchhhhhhhccccCccc-----c----C-CCCCCceehhHHHHHHHHHHHHHHH
Q 025315 188 NLCAGDGFADVVGRRFGKRK-----L----P-YNQNKSIAGSCAMASAGFLSSIGSR 234 (254)
Q Consensus 188 ~L~~GDg~AalVG~~fGr~k-----l----p-~~~~KS~EGSla~fv~s~l~~~~~l 234 (254)
..+-.|++|+=+|+.+||+. + | -++.-|++|++|.++.+++++++..
T Consensus 129 Ata~aDT~ASEiG~~~~~~p~lITtfkrV~~Gt~GaVS~~GelAav~Ga~iIal~~~ 185 (247)
T COG1836 129 ATANADTLASEIGKAYGKRPRLITTFKRVEPGTSGAVSLVGELAAVAGAFIIALLSY 185 (247)
T ss_pred HHHhhhHHHHHHhHhhCCCeEEEEeeeEcCCCCCCccchhhhHHHHHHHHHHHHHHH
Confidence 45569999999999999854 2 1 2566799999999999999987654
No 15
>PF01864 DUF46: Putative integral membrane protein DUF46; InterPro: IPR002726 This archaebacterial protein has no known function. It contains several predicted transmembrane regions, suggesting it is an integral membrane protein.
Probab=87.31 E-value=0.47 Score=40.91 Aligned_cols=33 Identities=27% Similarity=0.340 Sum_probs=24.7
Q ss_pred ccccC-ccccCCCCCCceehhHHHHHHHHHHHHHH
Q 025315 200 GRRFG-KRKLPYNQNKSIAGSCAMASAGFLSSIGS 233 (254)
Q Consensus 200 G~~fG-r~klp~~~~KS~EGSla~fv~s~l~~~~~ 233 (254)
|++|. .+|+- +++|||+|.+++.+.+.+++++.
T Consensus 34 G~~~~DGrRil-GdgKTwrG~i~gvl~g~l~g~i~ 67 (175)
T PF01864_consen 34 GKTFRDGRRIL-GDGKTWRGFIGGVLAGTLVGIIQ 67 (175)
T ss_pred CCccCCCCEec-CCCCeEEeeeHHHHHHHHHHHHH
Confidence 56653 12332 78999999999999999888754
No 16
>KOG1608 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.10 E-value=40 Score=31.75 Aligned_cols=31 Identities=23% Similarity=0.222 Sum_probs=20.3
Q ss_pred HHHHhccccCCccchhHHHHHHHHHHHHHHhh
Q 025315 78 EETARRDLFDQKLNRKLVHISIGLIFMLCWPL 109 (254)
Q Consensus 78 e~l~~r~~~~~e~~RKlvHi~~Glv~~l~~~~ 109 (254)
|.+-.+-+ ++|++||++|++.++......++
T Consensus 182 ElYfQK~K-keeiprqlvyi~l~l~hI~gAYl 212 (374)
T KOG1608|consen 182 ELYFQKTK-KEEIPRQLVYIILHLFHIAGAYL 212 (374)
T ss_pred HHHHHHHh-hhhccHHHHHHHHHHHHHHHHHH
Confidence 44433433 68899999999888765433333
No 17
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=52.53 E-value=39 Score=26.70 Aligned_cols=25 Identities=4% Similarity=0.094 Sum_probs=21.2
Q ss_pred HHHHHHhchhhhhhhccccCccccC
Q 025315 185 AICNLCAGDGFADVVGRRFGKRKLP 209 (254)
Q Consensus 185 aIl~L~~GDg~AalVG~~fGr~klp 209 (254)
.++..+++.|.+.++|+.+|++|..
T Consensus 42 ~~~~~g~~~a~~~~~s~~~G~~~~~ 66 (162)
T PF01554_consen 42 FMLIFGLATALQILISQNIGAGDYK 66 (162)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSSTT
T ss_pred hhhcccccccccceeeccccccccc
Confidence 3466788999999999999998764
No 18
>KOG2447 consensus Oligosaccharyltransferase, delta subunit (ribophorin II) [Posttranslational modification, protein turnover, chaperones]
Probab=29.33 E-value=2.5e+02 Score=26.15 Aligned_cols=47 Identities=23% Similarity=0.289 Sum_probs=24.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHH-HHhccccCCcc-chhHHHHHHHHHH
Q 025315 56 VLSDVCASAVSAAVAASCLRLWEE-TARRDLFDQKL-NRKLVHISIGLIF 103 (254)
Q Consensus 56 ~~~d~~~~~~~~~~~~~~l~~~e~-l~~r~~~~~e~-~RKlvHi~~Glv~ 103 (254)
...|..-.++..-.+ +++.+|.. ...-.+++... .|-.+|.+.|.+.
T Consensus 198 ~lS~iFt~iiv~pll-~Llv~W~klg~Nv~n~pss~~s~~~Fh~gi~g~~ 246 (287)
T KOG2447|consen 198 PLSDIFTGIIVSPLL-GLLVLWLKLGANVSNFPSSPTSTLGFHAGIAGIL 246 (287)
T ss_pred hhHHHHHHHHHHHHH-HHHHHHHHhhhhhccCCCCCchhhhhhhHHHHHH
Confidence 344554444333333 33334433 33334555555 8999999766543
No 19
>KOG4142 consensus Phospholipid methyltransferase [Lipid transport and metabolism]
Probab=27.42 E-value=3.6e+02 Score=23.41 Aligned_cols=91 Identities=20% Similarity=0.119 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHhhcccccchhhhhhcccccccccccchhHHHHHHHHHHHHHHhcCCchHHHHHHHHHh-----ch
Q 025315 119 LASLTPGVNIIRMLLVGSGMWKDEATVKSMSRYGDRRELLTGPLYYAITITLACVIYWRNSPNGIAAICNLCA-----GD 193 (254)
Q Consensus 119 la~l~~~l~~lr~~~~gl~~~~~~~~i~~~~R~~e~~~~l~G~lyy~l~~~l~~~lfw~~~pi~i~aIl~L~~-----GD 193 (254)
+++.+.+++++|-. ......|++..-+.+.++..+.++..+..+ .....+.++--+++ ||
T Consensus 64 LaatIf~lgivRd~-----------~y~~Al~~QPt~~~~~~p~~~~lg~alfgl----G~VLVLSSmykLG~~GTyLGD 128 (208)
T KOG4142|consen 64 LAATIFLLGIVRDH-----------CYTQALLSQPTMESLDTPAAYSLGLALFGL----GVVLVLSSMYKLGFAGTYLGD 128 (208)
T ss_pred HHHHHHHHHHHHHH-----------HHHHHHHhCCcchhccChHHHHHHHHHHhh----hHHHHHHHHHHhccchhhhhh
Confidence 45566677788743 233333444444556788888877655322 22111223333332 33
Q ss_pred hhhhhhccccCccccC--CCCCCceehhHHHHHHH
Q 025315 194 GFADVVGRRFGKRKLP--YNQNKSIAGSCAMASAG 226 (254)
Q Consensus 194 g~AalVG~~fGr~klp--~~~~KS~EGSla~fv~s 226 (254)
=+.-+--.|.-. .| .+.+--..||-..|+.-
T Consensus 129 YFGiL~~eRVtg--FPFNv~dNPMY~GSTl~fLg~ 161 (208)
T KOG4142|consen 129 YFGILKEERVTG--FPFNVLDNPMYWGSTLNFLGW 161 (208)
T ss_pred hhhhhhhhhccc--ccccccCCcccccchHHHHHH
Confidence 333333222211 34 46777788888777654
No 20
>PF14126 DUF4293: Domain of unknown function (DUF4293)
Probab=26.19 E-value=1.9e+02 Score=23.98 Aligned_cols=12 Identities=50% Similarity=0.532 Sum_probs=9.9
Q ss_pred ccchhhhhhccc
Q 025315 139 WKDEATVKSMSR 150 (254)
Q Consensus 139 ~~~~~~i~~~~R 150 (254)
.+||+++++++|
T Consensus 137 ~kDEkLVrS~DR 148 (149)
T PF14126_consen 137 KKDEKLVRSADR 148 (149)
T ss_pred HHHHHHHHHhhc
Confidence 368999998887
No 21
>COG3302 DmsC DMSO reductase anchor subunit [General function prediction only]
Probab=25.48 E-value=5.5e+02 Score=23.87 Aligned_cols=86 Identities=13% Similarity=0.289 Sum_probs=48.5
Q ss_pred hhhhhcccccc---cccccchhHHHHHHHHHHHH-HHhcC--CchHHHHHHHHHhchhhhhhhccccCccc-cC-CCCCC
Q 025315 143 ATVKSMSRYGD---RRELLTGPLYYAITITLACV-IYWRN--SPNGIAAICNLCAGDGFADVVGRRFGKRK-LP-YNQNK 214 (254)
Q Consensus 143 ~~i~~~~R~~e---~~~~l~G~lyy~l~~~l~~~-lfw~~--~pi~i~aIl~L~~GDg~AalVG~~fGr~k-lp-~~~~K 214 (254)
+-.|++.|-++ .+|...|.+|++.. ++..+ .+.+. .-+....++...+|=-+....++-| .++ .| |+..-
T Consensus 67 RA~naL~rvg~SwLSnEI~~~~lf~a~~-Gl~~L~~~l~k~~~~~~~~l~laav~Gvvfv~~m~~VY-~~~tV~tW~~~~ 144 (281)
T COG3302 67 RAFNALNRVGSSWLSNEIAAGSLFFALA-GLGWLLAVLKKMTALGNLWLLLAAVLGVVFVWMMAQVY-SITTVPTWHSGY 144 (281)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHhhh-ccCccchHhhcc
Confidence 44555555443 34556788988877 33222 12222 2223344666667777778889999 555 44 55556
Q ss_pred ceehhHHHHHHHHHHHHHH
Q 025315 215 SIAGSCAMASAGFLSSIGS 233 (254)
Q Consensus 215 S~EGSla~fv~s~l~~~~~ 233 (254)
|. +++++...+.+..+
T Consensus 145 T~---~~f~lT~~~~G~~l 160 (281)
T COG3302 145 TL---LAFFLTVLMGGSAL 160 (281)
T ss_pred hH---HHHHHHHHHHhHHH
Confidence 65 55655555555433
No 22
>PF11992 DUF3488: Domain of unknown function (DUF3488); InterPro: IPR021878 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 323 to 339 amino acids in length. This domain is found associated with PF01841 from PFAM. This domain has a conserved PLW sequence motif. This domain contains 6 transmembrane helices.
Probab=25.15 E-value=5.5e+02 Score=23.74 Aligned_cols=56 Identities=7% Similarity=-0.146 Sum_probs=27.5
Q ss_pred HHHHHHHHhchhhhhhhccccCccccCCCCCCceehhHHHHHHHHHHHHHHHHhhhcc
Q 025315 183 IAAICNLCAGDGFADVVGRRFGKRKLPYNQNKSIAGSCAMASAGFLSSIGSRHQVSSA 240 (254)
Q Consensus 183 i~aIl~L~~GDg~AalVG~~fGr~klp~~~~KS~EGSla~fv~s~l~~~~~l~~f~~~ 240 (254)
....+.++..=..++++.-.....+- ..++.+-=+..+++.++.++.+++..|-.+
T Consensus 125 ~~l~~ll~~~~~~~~L~~l~~~~~~~--~~~~~~~~~~~l~l~alpl~~vlFl~fPR~ 180 (325)
T PF11992_consen 125 FALYLLLFLVLLLAALVLLHQPDSRR--SLRQLLRRALKLLLQALPLALVLFLLFPRL 180 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccccc--hHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33333334333556666443322110 123444445667777777777666555433
No 23
>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]
Probab=24.39 E-value=35 Score=29.75 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=18.7
Q ss_pred HHHHHHhchhhhhhhccccCcccc
Q 025315 185 AICNLCAGDGFADVVGRRFGKRKL 208 (254)
Q Consensus 185 aIl~L~~GDg~AalVG~~fGr~kl 208 (254)
+.+--.+||...+.+||++|++.+
T Consensus 63 ~~lga~lGd~i~Y~iGr~~G~~~l 86 (208)
T COG0586 63 ATLGALLGDLISYWIGRRFGRKLL 86 (208)
T ss_pred HHHHHHHHHHHHHHHHHHhcHHHH
Confidence 344445799999999999997654
No 24
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=22.77 E-value=1.5e+02 Score=25.56 Aligned_cols=62 Identities=21% Similarity=0.381 Sum_probs=35.9
Q ss_pred chhHHHHHHHHHHHHHHhcCCc-------hHHHHHHHHHhchhhhhhhccccCc---cccCCCCCCceehhHHHHH
Q 025315 159 TGPLYYAITITLACVIYWRNSP-------NGIAAICNLCAGDGFADVVGRRFGK---RKLPYNQNKSIAGSCAMAS 224 (254)
Q Consensus 159 ~G~lyy~l~~~l~~~lfw~~~p-------i~i~aIl~L~~GDg~AalVG~~fGr---~klp~~~~KS~EGSla~fv 224 (254)
.|.++.++.+.++++.+-...| +++.+++++++.|++ ++|++..| .|+| .+...+..+++-+
T Consensus 77 i~e~fmP~alv~lv~~~v~~~~~~~~~~~~~~~~~~~~~iid~~--~l~r~vkk~v~~kFp--~~~~~~~gl~~Ya 148 (170)
T PF11241_consen 77 IGEFFMPVALVLLVLSFVVPSPQVQLYVTLAMYVLLLLVIIDGV--ILGRRVKKRVAEKFP--DTTESGRGLGWYA 148 (170)
T ss_pred hHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHCC--CCcCCCcchhhHH
Confidence 5888887777666554431222 123456667789987 78888765 3455 2233344445443
Done!