Query 025315
Match_columns 254
No_of_seqs 187 out of 1061
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 07:52:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025315.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025315hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wa7_B TIP, hypothetical 28.7 22.5 48 0.0017 18.7 1.8 20 23-42 5-24 (26)
2 3s8f_C Cytochrome C oxidase po 11.5 1.9E+02 0.0066 17.4 2.7 20 158-177 5-24 (34)
3 1vda_A FMBP-1, fibroin-modulat 11.2 91 0.0031 17.4 1.0 13 31-43 12-24 (26)
4 1vd8_A FMBP-1, fibroin-modulat 8.9 1.3E+02 0.0043 16.7 1.0 12 31-42 12-23 (26)
5 1qle_D Cytochrome AA3, ccytoch 8.0 1.7E+02 0.0059 18.4 1.6 24 211-234 12-35 (43)
6 2zjs_E Preprotein translocase 7.4 4.3E+02 0.015 17.3 3.5 29 205-234 18-46 (60)
7 2y69_K Cytochrome C oxidase po 7.1 6.7E+02 0.023 17.8 5.1 50 34-83 6-59 (80)
8 1bm4_A Protein (moloney murine 6.2 1.6E+02 0.0055 17.6 0.7 11 9-19 12-22 (32)
9 3dl8_C SECE; RECA-type ATPase 5.8 4.7E+02 0.016 17.4 3.1 29 205-234 17-45 (65)
10 2qjy_B Cytochrome C1; cytochro 5.7 2.9E+02 0.01 24.2 2.3 6 91-96 257-262 (269)
No 1
>1wa7_B TIP, hypothetical 28.7 kDa protein in DHFR 3'region (ORF1); SH3 domain, ligand, tyrosine kinase, signal transduction, LYN; NMR {Saimiriine herpesvirus 2}
Probab=22.54 E-value=48 Score=18.72 Aligned_cols=20 Identities=25% Similarity=0.587 Sum_probs=15.0
Q ss_pred CCCCCCCCccccccccCCCC
Q 025315 23 SPSPKFPPRFSQFSISRPNL 42 (254)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~ 42 (254)
-|.|+.|||-...+.+.++.
T Consensus 5 ~P~P~LPpRPaNLG~~qsat 24 (26)
T 1wa7_B 5 MPTPPLPPRPANLGERQAXX 24 (26)
T ss_dssp CCCCCCCCCTTSTTTSCC--
T ss_pred CCCCCCCCCccccccccccc
Confidence 37899999998888876653
No 2
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=11.51 E-value=1.9e+02 Score=17.42 Aligned_cols=20 Identities=25% Similarity=0.637 Sum_probs=15.3
Q ss_pred cchhHHHHHHHHHHHHHHhc
Q 025315 158 LTGPLYYAITITLACVIYWR 177 (254)
Q Consensus 158 l~G~lyy~l~~~l~~~lfw~ 177 (254)
++|++.....++..++.+|.
T Consensus 5 l~GTl~~V~ilg~~I~i~W~ 24 (34)
T 3s8f_C 5 PKGALAVILVLTLTILVFWL 24 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred ccceehHHHHHHHHHHHHHH
Confidence 47998888777777777773
No 3
>1vda_A FMBP-1, fibroin-modulator-binding-protein-1; tandem repeat, N-CAP, DNA binding, transcription; NMR {Synthetic} PDB: 1wnn_A
Probab=11.23 E-value=91 Score=17.45 Aligned_cols=13 Identities=23% Similarity=0.317 Sum_probs=9.5
Q ss_pred ccccccccCCCCC
Q 025315 31 RFSQFSISRPNLT 43 (254)
Q Consensus 31 ~~~~~~~~~~~~~ 43 (254)
|-|.|++||-+..
T Consensus 12 rms~yaakr~~s~ 24 (26)
T 1vda_A 12 RMSAYAAKRQASX 24 (26)
T ss_dssp SCSSSSCCCCCC-
T ss_pred HHHHHHHHHHhcc
Confidence 5688999997653
No 4
>1vd8_A FMBP-1, fibroin-modulator-binding-protein-1; tandem repeat, N-CAP, DNA binding, transcription; NMR {Synthetic} PDB: 1wnm_A
Probab=8.92 E-value=1.3e+02 Score=16.72 Aligned_cols=12 Identities=25% Similarity=0.470 Sum_probs=9.5
Q ss_pred ccccccccCCCC
Q 025315 31 RFSQFSISRPNL 42 (254)
Q Consensus 31 ~~~~~~~~~~~~ 42 (254)
|-|.|+++|-+.
T Consensus 12 rmseyaakrlss 23 (26)
T 1vd8_A 12 RMSEYAAKRLSS 23 (26)
T ss_dssp CSCSSCCCCSCC
T ss_pred HHHHHHHHHhcc
Confidence 568899999764
No 5
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=7.97 E-value=1.7e+02 Score=18.43 Aligned_cols=24 Identities=25% Similarity=0.090 Sum_probs=16.2
Q ss_pred CCCCceehhHHHHHHHHHHHHHHH
Q 025315 211 NQNKSIAGSCAMASAGFLSSIGSR 234 (254)
Q Consensus 211 ~~~KS~EGSla~fv~s~l~~~~~l 234 (254)
..+||++|.+.+.--+.+++..++
T Consensus 12 ~hE~Ty~gFi~~~k~gt~~~~~~l 35 (43)
T 1qle_D 12 HQQATFAGFIKGATWVSILSIAVL 35 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999988665555544433
No 6
>2zjs_E Preprotein translocase SECE subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_E
Probab=7.44 E-value=4.3e+02 Score=17.26 Aligned_cols=29 Identities=10% Similarity=0.119 Sum_probs=18.4
Q ss_pred ccccCCCCCCceehhHHHHHHHHHHHHHHH
Q 025315 205 KRKLPYNQNKSIAGSCAMASAGFLSSIGSR 234 (254)
Q Consensus 205 r~klp~~~~KS~EGSla~fv~s~l~~~~~l 234 (254)
|-.|| +++.++.=|+..++.+.+.+.++.
T Consensus 18 KV~WP-tr~e~~~~t~vViv~v~i~~~~~~ 46 (60)
T 2zjs_E 18 RVTWP-TREQVVEGTQAILLFTLAFMVILG 46 (60)
T ss_dssp CCCCS-CSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCc-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467 556666667777777777666543
No 7
>2y69_K Cytochrome C oxidase polypeptide 7B; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=7.12 E-value=6.7e+02 Score=17.82 Aligned_cols=50 Identities=26% Similarity=0.325 Sum_probs=25.5
Q ss_pred cccccCCCCCCcchhhccCC----CcchhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 025315 34 QFSISRPNLTSPSAAMLLPQ----NPVLSDVCASAVSAAVAASCLRLWEETARR 83 (254)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~----~~~~~d~~~~~~~~~~~~~~l~~~e~l~~r 83 (254)
+.|-+|-...++-+-+-.+. +|=-+|=.+..+.+.++..|+..|.+..-.
T Consensus 6 k~AL~~l~~rsiqq~~~Rq~H~k~~pdFHdKYGn~~L~~Ga~FC~a~W~y~~TQ 59 (80)
T 2y69_K 6 KNALSRLRVQSIQQAVARQIHQKRAPDFHDKYGNAVLASGATFCVAVWVYMATQ 59 (80)
T ss_dssp ------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHhccccCCCchhhhcCceeeecchhHHHhhHHHhhee
Confidence 44455554444444443332 566789999999999999999999887654
No 8
>1bm4_A Protein (moloney murine leukemia virus capsid); moloney murine leukemia virus capsid protein, momlv, MU-MLV, MHR, major homology region; NMR {Synthetic} SCOP: j.47.1.1
Probab=6.18 E-value=1.6e+02 Score=17.57 Aligned_cols=11 Identities=45% Similarity=0.794 Sum_probs=8.7
Q ss_pred ccchhhhhhhh
Q 025315 9 SICPSIFLRRI 19 (254)
Q Consensus 9 ~~~~~~~~~~~ 19 (254)
.-||+.|+.|.
T Consensus 12 ~EsPs~FlerL 22 (32)
T 1bm4_A 12 NESPSAFLERL 22 (32)
T ss_dssp GGHHHHHHHHH
T ss_pred CCChHHHHHHH
Confidence 35899999886
No 9
>3dl8_C SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=5.83 E-value=4.7e+02 Score=17.41 Aligned_cols=29 Identities=3% Similarity=0.034 Sum_probs=12.7
Q ss_pred ccccCCCCCCceehhHHHHHHHHHHHHHHH
Q 025315 205 KRKLPYNQNKSIAGSCAMASAGFLSSIGSR 234 (254)
Q Consensus 205 r~klp~~~~KS~EGSla~fv~s~l~~~~~l 234 (254)
|-.|| +++.++.=|+..++.+.+.+.++.
T Consensus 17 KV~WP-tr~e~~~~T~vViv~v~i~~~~i~ 45 (65)
T 3dl8_C 17 RVVWP-SRELVVKATISVIIFSLAIGVYLW 45 (65)
T ss_dssp ------------CHHHHHHHHHHHHHHHHH
T ss_pred cccCc-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467 566677777777777777776543
No 10
>2qjy_B Cytochrome C1; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_B* 2qjp_B* 2qjk_B*
Probab=5.66 E-value=2.9e+02 Score=24.19 Aligned_cols=6 Identities=17% Similarity=0.302 Sum_probs=0.0
Q ss_pred chhHHH
Q 025315 91 NRKLVH 96 (254)
Q Consensus 91 ~RKlvH 96 (254)
.||++.
T Consensus 257 ~~~~~~ 262 (269)
T 2qjy_B 257 GKKKTN 262 (269)
T ss_dssp ------
T ss_pred ccceec
Confidence 577653
Done!