Query 025315
Match_columns 254
No_of_seqs 187 out of 1061
Neff 6.1
Searched_HMMs 13730
Date Mon Mar 25 07:52:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025315.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025315hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1m56d_ f.23.8.1 (D:) Bacteria 22.9 13 0.00096 22.2 0.9 21 211-231 11-31 (42)
2 d1qled_ f.23.8.1 (D:) Bacteria 15.2 44 0.0032 19.8 2.1 21 211-231 12-32 (43)
3 d1u7ga_ f.44.1.1 (A:) Ammonium 13.3 2.3E+02 0.017 23.5 7.4 58 54-111 274-331 (383)
4 d1xmec1 f.23.9.1 (C:2-34) Bact 8.5 1.6E+02 0.012 15.9 2.8 19 159-177 5-23 (33)
5 d2dlqa3 g.37.1.1 (A:63-92) GLI 8.1 22 0.0016 19.2 -1.0 15 8-22 7-21 (30)
6 d2axtj1 f.23.32.1 (J:7-40) Pho 7.3 2E+02 0.015 15.7 3.1 21 217-237 7-27 (34)
7 d1ijva_ g.9.1.1 (A:) Beta-defe 6.5 50 0.0036 18.5 -0.0 9 5-13 11-19 (36)
8 d1msza_ d.68.7.1 (A:) SmuBP-2 4.2 1.5E+02 0.011 18.2 1.3 10 90-99 29-38 (62)
9 d1e12a_ f.13.1.1 (A:) Halorhod 4.1 6.6E+02 0.048 18.8 5.6 17 90-106 34-50 (239)
10 d2gvia1 d.81.3.1 (A:1-168) Unc 4.1 1.5E+02 0.011 21.9 1.3 20 190-209 61-80 (168)
No 1
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=22.86 E-value=13 Score=22.18 Aligned_cols=21 Identities=24% Similarity=0.290 Sum_probs=14.1
Q ss_pred CCCCceehhHHHHHHHHHHHH
Q 025315 211 NQNKSIAGSCAMASAGFLSSI 231 (254)
Q Consensus 211 ~~~KS~EGSla~fv~s~l~~~ 231 (254)
.++||.+|.+-+..=+.++++
T Consensus 11 vQEKTF~gFik~~t~~~i~~i 31 (42)
T d1m56d_ 11 QQEKTFAGFVRMVTWAAVVIV 31 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 367999999988544444433
No 2
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=15.24 E-value=44 Score=19.83 Aligned_cols=21 Identities=29% Similarity=0.145 Sum_probs=13.9
Q ss_pred CCCCceehhHHHHHHHHHHHH
Q 025315 211 NQNKSIAGSCAMASAGFLSSI 231 (254)
Q Consensus 211 ~~~KS~EGSla~fv~s~l~~~ 231 (254)
...||.+|.+-+..=..++++
T Consensus 12 vQEkTF~gFi~~~t~~~i~~i 32 (43)
T d1qled_ 12 HQQATFAGFIKGATWVSILSI 32 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 357999999988544444333
No 3
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=13.28 E-value=2.3e+02 Score=23.52 Aligned_cols=58 Identities=14% Similarity=-0.037 Sum_probs=40.1
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHhccccCCccchhHHHHHHHHHHHHHHhhcc
Q 025315 54 NPVLSDVCASAVSAAVAASCLRLWEETARRDLFDQKLNRKLVHISIGLIFMLCWPLFS 111 (254)
Q Consensus 54 ~~~~~d~~~~~~~~~~~~~~l~~~e~l~~r~~~~~e~~RKlvHi~~Glv~~l~~~~f~ 111 (254)
....+.+.++++..+....+....+++.+|.++|+.+.==-+|...|.+-.++..+|.
T Consensus 274 ~~~v~p~~A~~iG~i~g~i~~~~~~~l~~~~~iDD~~~~~~vHg~~Gi~G~l~~glfa 331 (383)
T d1u7ga_ 274 CGYIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFA 331 (383)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCGGGHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccchhhHHHHHhhccHHHHHHHHHHHhhcccccccceEeehhhhHHHHHHHHHHhc
Confidence 3445566666666666666666778787777788877777799888877655555553
No 4
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=8.54 E-value=1.6e+02 Score=15.88 Aligned_cols=19 Identities=26% Similarity=0.711 Sum_probs=13.9
Q ss_pred chhHHHHHHHHHHHHHHhc
Q 025315 159 TGPLYYAITITLACVIYWR 177 (254)
Q Consensus 159 ~G~lyy~l~~~l~~~lfw~ 177 (254)
.|.+-..+.+.+.++.||.
T Consensus 5 ~gal~vi~il~l~ilvfw~ 23 (33)
T d1xmec1 5 KGALAVILVLTLTILVFWL 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHH
Confidence 5777777777777778874
No 5
>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.12 E-value=22 Score=19.22 Aligned_cols=15 Identities=40% Similarity=0.866 Sum_probs=11.9
Q ss_pred cccchhhhhhhhhcc
Q 025315 8 FSICPSIFLRRIRVR 22 (254)
Q Consensus 8 ~~~~~~~~~~~~~~~ 22 (254)
-|.|...|-||...|
T Consensus 7 cs~cqe~f~rrmelr 21 (30)
T d2dlqa3 7 CSVCQETFRRRMELR 21 (30)
T ss_dssp CSSSCCEESSHHHHH
T ss_pred eHHHHHHHHHHHhhe
Confidence 478999999987665
No 6
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=7.26 E-value=2e+02 Score=15.75 Aligned_cols=21 Identities=5% Similarity=-0.173 Sum_probs=12.8
Q ss_pred ehhHHHHHHHHHHHHHHHHhh
Q 025315 217 AGSCAMASAGFLSSIGSRHQV 237 (254)
Q Consensus 217 EGSla~fv~s~l~~~~~l~~f 237 (254)
.|++++..+-.++++++..-+
T Consensus 7 v~tv~G~~vi~~vG~FfYGsY 27 (34)
T d2axtj1 7 VATVAGMGVIVIVGLFFYGAY 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred eeehhhhhhHhheeeeeeeee
Confidence 467777766666666554333
No 7
>d1ijva_ g.9.1.1 (A:) Beta-defensin, BD {Human (Homo sapiens), HBD1 [TaxId: 9606]}
Probab=6.47 E-value=50 Score=18.54 Aligned_cols=9 Identities=33% Similarity=0.789 Sum_probs=6.5
Q ss_pred ccccccchh
Q 025315 5 TANFSICPS 13 (254)
Q Consensus 5 ~~~~~~~~~ 13 (254)
|-|||-||-
T Consensus 11 ~c~~s~cpl 19 (36)
T d1ijva_ 11 QCLYSACPI 19 (36)
T ss_dssp EEESSCCCT
T ss_pred eeccccCcc
Confidence 568888873
No 8
>d1msza_ d.68.7.1 (A:) SmuBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.18 E-value=1.5e+02 Score=18.16 Aligned_cols=10 Identities=30% Similarity=0.189 Sum_probs=7.9
Q ss_pred cchhHHHHHH
Q 025315 90 LNRKLVHISI 99 (254)
Q Consensus 90 ~~RKlvHi~~ 99 (254)
..||++|-++
T Consensus 29 ~~R~~vH~lA 38 (62)
T d1msza_ 29 HDRLRVHQIA 38 (62)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5699999754
No 9
>d1e12a_ f.13.1.1 (A:) Halorhodopsin {Archaeon Halobacterium salinarum [TaxId: 2242]}
Probab=4.12 E-value=6.6e+02 Score=18.79 Aligned_cols=17 Identities=12% Similarity=0.067 Sum_probs=10.5
Q ss_pred cchhHHHHHHHHHHHHH
Q 025315 90 LNRKLVHISIGLIFMLC 106 (254)
Q Consensus 90 ~~RKlvHi~~Glv~~l~ 106 (254)
-..|..|...+++..++
T Consensus 34 ~~~R~~~~l~~~I~~IA 50 (239)
T d1e12a_ 34 GRPRLIWGATLMIPLVS 50 (239)
T ss_dssp THHHHHHHHHHHHHHHH
T ss_pred CchhhhhHHHHHHHHHH
Confidence 34567777777665443
No 10
>d2gvia1 d.81.3.1 (A:1-168) Uncharacterized protein Ta1109 {Thermoplasma acidophilum [TaxId: 2303]}
Probab=4.06 E-value=1.5e+02 Score=21.87 Aligned_cols=20 Identities=30% Similarity=0.610 Sum_probs=16.7
Q ss_pred HhchhhhhhhccccCccccC
Q 025315 190 CAGDGFADVVGRRFGKRKLP 209 (254)
Q Consensus 190 ~~GDg~AalVG~~fGr~klp 209 (254)
|.-|++-.+-|-.+||+++.
T Consensus 61 C~~Davq~ltGcT~Gkg~L~ 80 (168)
T d2gvia1 61 CFNDGAQAATGCTYGKGLFS 80 (168)
T ss_dssp HHHHHHHHHHSCCTTTTCEE
T ss_pred cHHhHHHHHhcccccCCceE
Confidence 67799988999999988763
Done!