BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>025316
MSLCVREVTANRETKDNKPFKIFVGYDPREDLAYRVCHRSILKRSSIPVKITPIVQSDLR
KSGLYWRERGQTESTEFSFSRFLTPYLAGFDGWAVFVDCDFLYLADIKELCDLIDDKYAI
MCVHHDYTPKETTKMDGAVQTVYPRKNWSSMVLYNCGHPKNKILTPEVVNTQTGAFLHRF
QWLEDEEIGSIPFVWNFLEGHNMVVENDPTTFPKAIHYTRGGPWFEAWKHCEFADLWLKE
MEEYKNEANKTVEK

High Scoring Gene Products

Symbol, full name Information P value
CDI
cadmium 2+ induced
protein from Arabidopsis thaliana 5.4e-118
MCA1513
Putative uncharacterized protein
protein from Methylococcus capsulatus str. Bath 5.5e-54

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  025316
        (254 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2010776 - symbol:CDI "cadmium 2+ induced" spec...  1162  5.4e-118  1
UNIPROTKB|Q608H8 - symbol:MCA1513 "Putative uncharacteriz...   558  5.5e-54   1


>TAIR|locus:2010776 [details] [associations]
            symbol:CDI "cadmium 2+ induced" species:3702 "Arabidopsis
            thaliana" [GO:0005634 "nucleus" evidence=ISM] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0009846 "pollen germination" evidence=IMP]
            [GO:0009860 "pollen tube growth" evidence=IMP] EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0016740 GO:GO:0009860
            EMBL:AC006193 GO:GO:0009846 EMBL:BT010414 EMBL:AK176271
            IPI:IPI00544787 PIR:D96673 RefSeq:NP_176678.1 UniGene:At.24586
            ProteinModelPortal:Q9XIP8 PaxDb:Q9XIP8 PRIDE:Q9XIP8 DNASU:842806
            EnsemblPlants:AT1G64980.1 GeneID:842806 KEGG:ath:AT1G64980
            TAIR:At1g64980 eggNOG:NOG11987 HOGENOM:HOG000234251
            InParanoid:Q9XIP8 OMA:FMDCDML PhylomeDB:Q9XIP8
            ProtClustDB:CLSN2679361 ArrayExpress:Q9XIP8 Genevestigator:Q9XIP8
            Uniprot:Q9XIP8
        Length = 259

 Score = 1162 (414.1 bits), Expect = 5.4e-118, P = 5.4e-118
 Identities = 206/249 (82%), Positives = 222/249 (89%)

Query:     5 VREVTANRETKDNKPFKIFVGYDPREDLAYRVCHRSILKRSSIPVKITPIVQSDLRKSGL 64
             V+  T N  + + KPF+IFVGYDPREDLAY+VCH SI KRSSIPV+ITPI+QSDLRK GL
Sbjct:     8 VKSETCNNGSSEKKPFRIFVGYDPREDLAYQVCHHSITKRSSIPVEITPIIQSDLRKKGL 67

Query:    65 YWRERGQTESTEFSFSRFLTPYLAGFDGWAVFVDCDFLYLADIKELCDLIDDKYAIMCVH 124
             YWRERGQ ESTEFSFSRFLTP+L+ + GWA+FVDCDFLYLADIKEL DLIDDKYAIMCV 
Sbjct:    68 YWRERGQLESTEFSFSRFLTPHLSDYQGWAMFVDCDFLYLADIKELTDLIDDKYAIMCVQ 127

Query:   125 HDYTPKETTKMDGAVQTVYPRKNWSSMVLYNCGHPKNKILTPEVVNTQTGAFLHRFQWLE 184
             HDYTPKETTKMDGAVQTVYPRKNWSSMVLYNCGHPKNK L+PE+VNTQTGAFLHRFQWLE
Sbjct:   128 HDYTPKETTKMDGAVQTVYPRKNWSSMVLYNCGHPKNKTLSPEIVNTQTGAFLHRFQWLE 187

Query:   185 DEEIGSIPFVWNFLEGHNMVVENDPTTFPKAIHYTRGGPWFEAWKHCEFADLWLKEMEEY 244
             DEEIGSIPFVWNFLEGHN VVE DPTT PKA+HYTRGGPWF+AWK CEFADLWL EMEEY
Sbjct:   188 DEEIGSIPFVWNFLEGHNRVVEKDPTTQPKAVHYTRGGPWFDAWKDCEFADLWLNEMEEY 247

Query:   245 KNEANKTVE 253
               E  K  +
Sbjct:   248 NKENKKEAD 256


>UNIPROTKB|Q608H8 [details] [associations]
            symbol:MCA1513 "Putative uncharacterized protein"
            species:243233 "Methylococcus capsulatus str. Bath" [GO:0003674
            "molecular_function" evidence=ND] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR002495 Pfam:PF01501 GO:GO:0016757 EMBL:AE017282
            GenomeReviews:AE017282_GR HOGENOM:HOG000234251 OMA:FMDCDML
            RefSeq:YP_113969.1 ProteinModelPortal:Q608H8 GeneID:3102847
            KEGG:mca:MCA1513 PATRIC:22606864 ProtClustDB:CLSK2301743
            Uniprot:Q608H8
        Length = 232

 Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
 Identities = 111/224 (49%), Positives = 150/224 (66%)

Query:    19 PFKIFVGYDPREDLAYRVCHRSILKRSSIPVKITPIVQSDLRKSGLYWRERGQTESTEFS 78
             P +IF+GYDPRE LA+ V   SI  R+S PV ITP++ S L +  +Y RER   +ST+FS
Sbjct:     6 PIRIFIGYDPREALAFSVLAHSIHVRASRPVSITPLMLSQLGQ--VYRRERNPLQSTDFS 63

Query:    79 FSRFLTPYLAGFDGWAVFVDCDFLYLADIKELCDLIDDKYAIMCVHHDYTPKETTKMDGA 138
             FSRFL PYL+GF GW+VF+DCD L L DI +L DL D++YA+  V HD+ P E  K   A
Sbjct:    64 FSRFLVPYLSGFSGWSVFLDCDMLVLDDIAKLWDLRDERYAVQVVKHDHVPAEEIKFLDA 123

Query:   139 VQTVYPRKNWSSMVLYNCGHPKNKILTPEVVNTQTGAFLHRFQWLEDEE-IGSIPFVWNF 197
              QT Y +KNWSS++L++  + K K LTP+ VNT +G  LH+F+WL+DE  IG IP  WN 
Sbjct:   124 AQTRYEKKNWSSVMLFD--NAKCKALTPDYVNTASGLELHQFKWLDDEALIGEIPHRWNH 181

Query:   198 LEGHNMVVENDPTTFPKAIHYTRGGPWFEAWKHCEFADLWLKEM 241
             L G++      P+      HYT GGP+FE ++ CE+++ W  E+
Sbjct:   182 LVGYDT-----PSPEVSLAHYTIGGPYFEEYRDCEYSEEWRAEL 220


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.137   0.446    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      254       254   0.00084  114 3  11 22  0.43    33
                                                     32  0.47    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  622 (66 KB)
  Total size of DFA:  247 KB (2132 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.58u 0.10s 20.68t   Elapsed:  00:00:01
  Total cpu time:  20.58u 0.10s 20.68t   Elapsed:  00:00:01
  Start:  Fri May 10 03:40:25 2013   End:  Fri May 10 03:40:26 2013

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