BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025316
         (254 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|B9E6R9|GCSPA_MACCJ Probable glycine dehydrogenase [decarboxylating] subunit 1
           OS=Macrococcus caseolyticus (strain JCSC5402) GN=gcvPA
           PE=3 SV=1
          Length = 447

 Score = 34.7 bits (78), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 5/63 (7%)

Query: 131 ETTKMDGAVQTVY-PRKNWSSMVLYNCGHPKNK-ILTPEVVNTQTGAFLHRF---QWLED 185
           E T MD A  ++Y    +++   +  CGH +NK I+  + VN Q+ A LH +   Q LE 
Sbjct: 124 ELTGMDCANSSMYDGGTSFAEAAMLACGHTRNKKIIVSKAVNDQSRAVLHTYAKGQHLEV 183

Query: 186 EEI 188
            EI
Sbjct: 184 VEI 186


>sp|P0A375|CR1CA_BACTE Pesticidal crystal protein cry1Ca OS=Bacillus thuringiensis subsp.
           entomocidus GN=cry1Ca PE=2 SV=1
          Length = 1189

 Score = 34.3 bits (77), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 9/68 (13%)

Query: 28  PREDLAYRVCHRSILKRSSIPVKITPIVQSDLRKSGLYWRERGQTESTEFSFSRF-LTPY 86
           PRE  ++R+CH + ++RS  P   T +V S        W +R  T +      R    P 
Sbjct: 421 PREGYSHRLCHATFVQRSGTPFLTTGVVFS--------WTDRSATLTNTIDPERINQIPL 472

Query: 87  LAGFDGWA 94
           + GF  W 
Sbjct: 473 VKGFRVWG 480


>sp|P0A376|CR1CA_BACTA Pesticidal crystal protein cry1Ca OS=Bacillus thuringiensis subsp.
           aizawai GN=cry1Ca PE=2 SV=1
          Length = 1189

 Score = 33.5 bits (75), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 9/68 (13%)

Query: 28  PREDLAYRVCHRSILKRSSIPVKITPIVQSDLRKSGLYWRERGQTESTEFSFSRF-LTPY 86
           PRE  ++R+CH + ++RS  P   T +V S        W  R  T +      R    P 
Sbjct: 421 PREGYSHRLCHATFVQRSGTPFLTTGVVFS--------WTHRSATLTNTIDPERINQIPL 472

Query: 87  LAGFDGWA 94
           + GF  W 
Sbjct: 473 VKGFRVWG 480


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.137    0.446 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,830,643
Number of Sequences: 539616
Number of extensions: 4387387
Number of successful extensions: 7757
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 7757
Number of HSP's gapped (non-prelim): 3
length of query: 254
length of database: 191,569,459
effective HSP length: 115
effective length of query: 139
effective length of database: 129,513,619
effective search space: 18002393041
effective search space used: 18002393041
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)