BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025317
(254 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With A G95a Surface Mutation From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 75/153 (49%), Gaps = 6/153 (3%)
Query: 89 DEKRLLEQNKRMQKENSAPEGFP---NFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKG 145
D R L R+Q + + PE N I E ++ S T +SGL Y D G G
Sbjct: 59 DSLRFLYDGIRIQADQT-PEDLDMEDNDIIEAHREQIGGSTVVTT-ESGLKYEDLTEGSG 116
Query: 146 DCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRR 205
+ GQ V HY G+ G++ DS+ + P +G ++ G++EG++ M+ GG RR
Sbjct: 117 AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRR 176
Query: 206 IIIPPELGPPV-GPSTFFSAKQFEVFDVELLSV 237
+ IPP+LG G + VF+VELL V
Sbjct: 177 LTIPPQLGYGARGAAGVIPPNATLVFEVELLDV 209
>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From
Burkholderia Pseudomallei
Length = 133
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 64/127 (50%), Gaps = 7/127 (5%)
Query: 112 NFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDST 171
+ G + VVT+E SGL Y D G G + GQ V HY G+ G++ DS+
Sbjct: 13 GLVPRGSHMTVVTTE------SGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSS 66
Query: 172 YLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRIIIPPELGPPV-GPSTFFSAKQFEVF 230
+ P +G ++ G++EG++ M+ GG RR+ IPP+LG G VF
Sbjct: 67 KDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVF 126
Query: 231 DVELLSV 237
+VELL V
Sbjct: 127 EVELLDV 133
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation A54e From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 74/153 (48%), Gaps = 6/153 (3%)
Query: 89 DEKRLLEQNKRMQKENSAPEGFP---NFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKG 145
D R L R+Q + + PE N I E ++ S T +SGL Y D G G
Sbjct: 59 DSLRFLYDGIRIQADQT-PEDLDMEDNDIIEAHREQIGGSTVVTT-ESGLKYEDLTEGSG 116
Query: 146 DCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRR 205
+ GQ V HY G+ G++ DS+ + P +G ++ G++EG++ M+ GG RR
Sbjct: 117 AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFEFVLGGGMVIKGWDEGVQGMKVGGVRR 176
Query: 206 IIIPPELGPPV-GPSTFFSAKQFEVFDVELLSV 237
+ IPP+LG G VF+VELL V
Sbjct: 177 LTIPPQLGYGARGAGGVIPPNATLVFEVELLDV 209
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|D Chain D, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
Length = 209
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 74/153 (48%), Gaps = 6/153 (3%)
Query: 89 DEKRLLEQNKRMQKENSAPEGFP---NFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKG 145
D R L R+Q + + PE N I E ++ S T +SGL Y D G G
Sbjct: 59 DSLRFLYDGIRIQADQT-PEDLDMEDNDIIEAHREQIGGSTVVTT-ESGLKYEDLTEGSG 116
Query: 146 DCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRR 205
+ GQ V HY G+ G++ DS+ + P +G ++ G++EG++ M+ GG RR
Sbjct: 117 AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRR 176
Query: 206 IIIPPELGPPV-GPSTFFSAKQFEVFDVELLSV 237
+ IPP+LG G VF+VELL V
Sbjct: 177 LTIPPQLGYGARGAGGVIPPNATLVFEVELLDV 209
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation V3i From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 74/153 (48%), Gaps = 6/153 (3%)
Query: 89 DEKRLLEQNKRMQKENSAPEGFP---NFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKG 145
D R L R+Q + + PE N I E ++ S T +SGL Y D G G
Sbjct: 59 DSLRFLYDGIRIQADQT-PEDLDMEDNDIIEAHREQIGGSTIVTT-ESGLKYEDLTEGSG 116
Query: 146 DCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRR 205
+ GQ V HY G+ G++ DS+ + P +G ++ G++EG++ M+ GG RR
Sbjct: 117 AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRR 176
Query: 206 IIIPPELGPPV-GPSTFFSAKQFEVFDVELLSV 237
+ IPP+LG G VF+VELL V
Sbjct: 177 LTIPPQLGYGARGAGGVIPPNATLVFEVELLDV 209
>pdb|1Q6U|A Chain A, Crystal Structure Of Fkpa From Escherichia Coli
Length = 245
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 82/148 (55%), Gaps = 22/148 (14%)
Query: 99 RMQKENSAPEGFPNFIREGF--EVKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVIF 156
+M+K+ + E RE F E V TS +GL+Y+ E GKG+ PKD V+
Sbjct: 91 KMEKDAADNEAKGKEYREKFAKEKGVKTSS------TGLVYQVVEAGKGEAPKDSDTVVV 144
Query: 157 HYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRIIIPPELG--- 213
+Y G G+ D++Y +G P R+ + ++PG+ EG+++++ GGK +++IPPEL
Sbjct: 145 NYKGTLIDGKEFDNSYTRGEPLSFRL--DGVIPGWTEGLKNIKKGGKIKLVIPPELAYGK 202
Query: 214 ---PPVGPSTFFSAKQFEVFDVELLSVQ 238
P + P++ VFDVELL V+
Sbjct: 203 AGVPGIPPNSTL------VFDVELLDVK 224
>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
pdb|2KO7|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
Cycloheximide-N- Ethylethanoate
pdb|2L2S|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
1-{[(4-Methylphenyl) Thio]acetyl}piperidine
Length = 117
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 62/119 (52%), Gaps = 7/119 (5%)
Query: 120 VKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPAR 179
+ VVT+E SGL Y D G G + GQ V HY G+ G++ DS+ + P
Sbjct: 5 MTVVTTE------SGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFA 58
Query: 180 IRMGTNALVPGFEEGIRDMRPGGKRRIIIPPELGPPV-GPSTFFSAKQFEVFDVELLSV 237
+G ++ G++EG++ M+ GG RR+ IPP+LG G VF+VELL V
Sbjct: 59 FVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLDV 117
>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ3|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 61/117 (52%), Gaps = 7/117 (5%)
Query: 122 VVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIR 181
VVT+E SGL Y D G G + GQ V HY G+ G++ DS+ + P
Sbjct: 3 VVTTE------SGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFV 56
Query: 182 MGTNALVPGFEEGIRDMRPGGKRRIIIPPELGPPV-GPSTFFSAKQFEVFDVELLSV 237
+G ++ G++EG++ M+ GG RR+ IPP+LG G VF+VELL V
Sbjct: 57 LGGGHVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLDV 113
>pdb|1Q6H|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6H|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6I|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
pdb|1Q6I|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
Length = 224
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 68/112 (60%), Gaps = 14/112 (12%)
Query: 133 SGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFE 192
+GL+Y+ E GKG+ PKD V+ +Y G G+ D++Y +G P R+ + ++PG+
Sbjct: 121 TGLVYQVVEAGKGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--DGVIPGWT 178
Query: 193 EGIRDMRPGGKRRIIIPPELG------PPVGPSTFFSAKQFEVFDVELLSVQ 238
EG+++++ GGK +++IPPEL P + P++ VFDVELL V+
Sbjct: 179 EGLKNIKKGGKIKLVIPPELAYGKAGVPGIPPNSTL------VFDVELLDVK 224
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Fk506
pdb|4FN2|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4FN2|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4G50|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4G50|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4GIV|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
pdb|4GIV|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
Length = 209
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 73/153 (47%), Gaps = 6/153 (3%)
Query: 89 DEKRLLEQNKRMQKENSAPEGFP---NFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKG 145
D R L R+Q + + PE N I E ++ S T +SGL Y D G G
Sbjct: 59 DSLRFLYDGIRIQADQT-PEDLDMEDNDIIEAHREQIGGSTVVTT-ESGLKYEDLTEGSG 116
Query: 146 DCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRR 205
+ GQ V HY G+ G++ S+ + P +G ++ G++EG++ M+ GG RR
Sbjct: 117 AEARAGQTVSVHYTGWLTDGQKFGSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRR 176
Query: 206 IIIPPELGPPV-GPSTFFSAKQFEVFDVELLSV 237
+ IPP+LG G VF+VELL V
Sbjct: 177 LTIPPQLGYGARGAGGVIPPNATLVFEVELLDV 209
>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ2|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 60/117 (51%), Gaps = 7/117 (5%)
Query: 122 VVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIR 181
VVT+E SGL Y D G G + GQ V HY G+ G++ DS+ + P
Sbjct: 3 VVTTE------SGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFV 56
Query: 182 MGTNALVPGFEEGIRDMRPGGKRRIIIPPEL-GPPVGPSTFFSAKQFEVFDVELLSV 237
+G ++ G++EG++ M+ GG RR+ IPP+L G VF+VELL V
Sbjct: 57 LGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGAGGAGGVIPPNATLVFEVELLDV 113
>pdb|1U79|A Chain A, Crystal Structure Of Atfkbp13
pdb|1U79|B Chain B, Crystal Structure Of Atfkbp13
pdb|1U79|C Chain C, Crystal Structure Of Atfkbp13
pdb|1U79|D Chain D, Crystal Structure Of Atfkbp13
pdb|1U79|E Chain E, Crystal Structure Of Atfkbp13
pdb|1Y0O|A Chain A, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|B Chain B, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|C Chain C, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|D Chain D, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|E Chain E, Crystal Structure Of Reduced Atfkbp13
Length = 129
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 52/95 (54%), Gaps = 6/95 (6%)
Query: 124 TSENYTKRDSGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMG 183
TS ++ SGL + D VG G GQ + HY+G E+G+ DS+Y +G P R+G
Sbjct: 3 TSCEFSVSPSGLAFCDKVVGYGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIG 62
Query: 184 TNALVPGFEEGIRD------MRPGGKRRIIIPPEL 212
++ G+++GI M GGKR + IPPEL
Sbjct: 63 VGEVIKGWDQGILGSDGIPPMLTGGKRTLRIPPEL 97
>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
pdb|1BL4|B Chain B, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
Length = 107
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 148 PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRII 207
PK GQ + HY G E G+++DS+ + P + +G ++ G+EEG+ M G + ++
Sbjct: 16 PKRGQTCVVHYTGMLEDGKKVDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 208 IPPELG-PPVGPSTFFSAKQFEVFDVELLSVQ 238
I P+ G VFDVELL ++
Sbjct: 76 ISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin
Length = 107
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 148 PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRII 207
PK GQ + HY G E G++ DS+ + P + +G ++ GFEEG+ M G + ++
Sbjct: 16 PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGFEEGVAQMSVGQRAKLT 75
Query: 208 IPPELG-PPVGPSTFFSAKQFEVFDVELLSVQ 238
I P+ G VFDVELL ++
Sbjct: 76 ISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug
Complexes. Crystallographic And Functional Analysis
Length = 113
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 148 PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRII 207
PK G V HY G E+G++ DS+ +GSP + +G ++ G++ GI + G K R+
Sbjct: 22 PKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLT 81
Query: 208 IP-PELGPPVGPSTFFSAKQFEVFDVELLSVQ 238
IP P P G VFDVELL V
Sbjct: 82 IPGPYAYGPRGFPGLIPPNSTLVFDVELLKVN 113
>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin
Length = 107
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 148 PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRII 207
PK GQ + HY G ++G++ DS+ + P + R+G ++ GFEEG M G + ++
Sbjct: 16 PKKGQTCVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGFEEGAAQMSLGQRAKLT 75
Query: 208 IPPELG-PPVGPSTFFSAKQFEVFDVELLSVQ 238
P++ G +FDVELL+++
Sbjct: 76 CTPDVAYGATGHPGVIPPNATLIFDVELLNLE 107
>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex
pdb|1EYM|B Chain B, Fk506 Binding Protein Mutant, Homodimeric Complex
Length = 107
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 148 PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRII 207
PK GQ + HY G E G+++DS+ + P + +G ++ G+EEG+ M G + ++
Sbjct: 16 PKRGQTCVVHYTGMLEDGKKMDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 208 IPPELG-PPVGPSTFFSAKQFEVFDVELLSVQ 238
I P+ G VFDVELL ++
Sbjct: 76 ISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
Length = 107
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 148 PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRII 207
PK GQ + HY G E G++ DS+ + P + +G ++ G+EEG+ M G + ++
Sbjct: 16 PKAGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 208 IPPELG-PPVGPSTFFSAKQFEVFDVELLSVQ 238
I P+ G VFDVELL ++
Sbjct: 76 ISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp-
12 Complex
pdb|1FKG|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKH|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
pdb|1FKI|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKI|B Chain B, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
Length = 107
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 148 PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRII 207
PK GQ + HY G E G++ DS+ + P + +G ++ G+EEG+ M G + ++
Sbjct: 16 PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 208 IPPELG-PPVGPSTFFSAKQFEVFDVELLSVQ 238
I P+ G VFDVELL ++
Sbjct: 76 ISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin
Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin
pdb|3MDY|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
pdb|3MDY|D Chain D, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
Length = 109
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 148 PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRII 207
PK GQ + HY G E G++ DS+ + P + +G ++ G+EEG+ M G + ++
Sbjct: 18 PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 77
Query: 208 IPPELG-PPVGPSTFFSAKQFEVFDVELLSVQ 238
I P+ G VFDVELL ++
Sbjct: 78 ISPDYAYGATGHPGIIPPHATLVFDVELLKLE 109
>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH
Immunosuppressant Fk506
Length = 107
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 148 PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRII 207
PK GQ + HY G E G++ DS+ + P + +G ++ G+EEG+ M G + ++
Sbjct: 16 PKRGQTCVVHYTGMLEDGKKFDSSRDKNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 208 IPPELG-PPVGPSTFFSAKQFEVFDVELLSVQ 238
I P+ G VFDVELL ++
Sbjct: 76 ISPDYAYGATGVPGIIPPHATLVFDVELLKLE 107
>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 356
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 146 DCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRR 205
D P+ G +V HY G G++ DS+ + + ++G ++ G+++GI+ M+ G
Sbjct: 25 DTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGENAL 84
Query: 206 IIIPPEL--GPPVGPSTFFSAKQFEVFDVELLS 236
IPPEL G P T + + FDVELLS
Sbjct: 85 FTIPPELAYGESGSPPTIPANATLQ-FDVELLS 116
>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With
Huma
pdb|1B6C|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|C Chain C, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|E Chain E, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|G Chain G, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1QPF|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPF|D Chain D, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPL|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1QPL|C Chain C, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1D6O|A Chain A, Native Fkbp
pdb|1D6O|B Chain B, Native Fkbp
pdb|1D7H|A Chain A, Fkbp Complexed With Dmso
pdb|1D7H|B Chain B, Fkbp Complexed With Dmso
pdb|1D7I|A Chain A, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7I|B Chain B, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7J|A Chain A, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|1D7J|B Chain B, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|3FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|4FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|1J4R|A Chain A, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|B Chain B, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|D Chain D, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4H|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000107 Small Molecule
pdb|1J4I|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000308 Small Molecule
pdb|2DG3|A Chain A, Wildtype Fk506-Binding Protein Complexed With Rapamycin
pdb|1FKD|A Chain A, Fk-506 Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1FKF|A Chain A, Atomic Structure Of Fkbp-Fk506, An
Immunophilin-Immunosuppressant Complex
pdb|1FKJ|A Chain A, Atomic Structure Of Fkbp12-Fk506, An Immunophilin
Immunosuppressant Complex
pdb|2FKE|A Chain A, Fk-506-Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1F40|A Chain A, Solution Structure Of Fkbp12 Complexed With Gpi-1046, A
Neurotrophic Ligand
pdb|1FKR|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKS|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKT|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|2PPN|A Chain A, Crystal Structure Of Fkbp12
pdb|1A7X|A Chain A, Fkbp12-Fk1012 Complex
pdb|1A7X|B Chain B, Fkbp12-Fk1012 Complex
pdb|4DH0|A Chain A, X-Ray Crystal Structure Of 28-O-Methylrapamycin Complexed
With Fkbp12: Is The Cyclohexyl Moiety Part Of The
Effector Domain Of Rapamycin?
pdb|2RSE|A Chain A, Nmr Structure Of Fkbp12-Mtor Frb Domain-Rapamycin Complex
Structure Determined Based On Pcs
pdb|1NSG|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
Length = 107
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 148 PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRII 207
PK GQ + HY G E G++ DS+ + P + +G ++ G+EEG+ M G + ++
Sbjct: 16 PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 208 IPPELG-PPVGPSTFFSAKQFEVFDVELLSVQ 238
I P+ G VFDVELL ++
Sbjct: 76 ISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
pdb|3JYM|B Chain B, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 377
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 146 DCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRR 205
D P+ G +V HY G G++ DS+ + + ++G ++ G+++GI+ M+ G
Sbjct: 41 DTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGENAL 100
Query: 206 IIIPPEL--GPPVGPSTFFSAKQFEVFDVELLS 236
IPPEL G P T + + FDVELLS
Sbjct: 101 FTIPPELAYGESGSPPTIPANATLQ-FDVELLS 132
>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin
Length = 107
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 148 PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRII 207
PK GQ + HY G E G++ DS+ + P + +G ++ G EEG+ M G + ++
Sbjct: 16 PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGLEEGVAQMSVGQRAKLT 75
Query: 208 IPPELG-PPVGPSTFFSAKQFEVFDVELLSVQ 238
I P+ G VFDVELL ++
Sbjct: 76 ISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding
Protein
pdb|1FKL|A Chain A, Atomic Structure Of Fkbp12-Rapaymycin, An Immunophilin-
Immunosuppressant Complex
Length = 107
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 148 PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRII 207
PK GQ + HY G E G++ DS+ + P + +G ++ G+EEG+ M G + ++
Sbjct: 16 PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFVLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 208 IPPELG-PPVGPSTFFSAKQFEVFDVELLSVQ 238
I P+ G +FDVELL ++
Sbjct: 76 ISPDYAYGATGHPGIIPPNATLIFDVELLKLE 107
>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12
Length = 107
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 148 PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRII 207
PK GQ + HY G E G++ DS+ + P + +G ++ G++EG+ M G + ++
Sbjct: 16 PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWQEGVAQMSVGQRAKLT 75
Query: 208 IPPELG-PPVGPSTFFSAKQFEVFDVELLSVQ 238
I P+ G VFDVELL ++
Sbjct: 76 ISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
>pdb|2PBC|A Chain A, Fk506-Binding Protein 2
pdb|2PBC|B Chain B, Fk506-Binding Protein 2
pdb|2PBC|C Chain C, Fk506-Binding Protein 2
pdb|2PBC|D Chain D, Fk506-Binding Protein 2
Length = 102
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 14/102 (13%)
Query: 149 KDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRIII 208
+ G + HY G E G DS+ Q P +GT ++ G+++G+ M G KR+++I
Sbjct: 7 RKGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVI 66
Query: 209 PPELG------PPVGPSTFFSAKQFEVFDVELLSVQDCQRRT 244
P ELG PP P VF+VELL + +RRT
Sbjct: 67 PSELGYGERGAPPKIP-----GGATLVFEVELLKI---ERRT 100
>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12
Length = 107
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 148 PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRII 207
PK GQ + HY G E G++ DS+ + P + +G ++ G+ EG+ M G + ++
Sbjct: 16 PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWAEGVAQMSVGQRAKLT 75
Query: 208 IPPELG-PPVGPSTFFSAKQFEVFDVELLSVQ 238
I P+ G VFDVELL ++
Sbjct: 76 ISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl
Cis-Trans Isomerase From Giardia Lamblia, Seattle
Structural Genomics Center For Infectious Disease Target
Gilaa.00840.A
Length = 130
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 11/96 (11%)
Query: 148 PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRII 207
P+ G++V HY G G++ DS+ +G P + +G ++ G+++G+ M G K
Sbjct: 40 PQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGWDQGVATMTLGEKALFT 99
Query: 208 IPPELG------PPVGPSTFFSAKQFEVFDVELLSV 237
IP +L PPV P K VF+VELL+V
Sbjct: 100 IPYQLAYGERGYPPVIPP-----KATLVFEVELLAV 130
>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti
pdb|2LPV|A Chain A, Solution Structure Of Fkbp12 From Aedes Aegypti
Length = 108
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 148 PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRII 207
PK GQ + HY G G+ DS+ +G P R +G ++ G++EG+ M G + +++
Sbjct: 17 PKAGQVAVVHYTGTLADGKVFDSSRTRGKPFRFTVGRGEVIRGWDEGVAQMSVGQRAKLV 76
Query: 208 IPPELG-PPVGPSTFFSAKQFEVFDVELLSVQ 238
P+ G FDVELL V+
Sbjct: 77 CSPDYAYGSRGHPGVIPPNATLTFDVELLRVE 108
>pdb|1FD9|A Chain A, Crystal Structure Of The Macrophage Infectivity
Potentiator Protein (Mip) A Major Virulence Factor From
Legionella Pneumophila
Length = 213
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 15/113 (13%)
Query: 133 SGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFE 192
SGL Y+ G G P V Y G G DST G PA ++ + ++PG+
Sbjct: 106 SGLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQV--SQVIPGWT 163
Query: 193 EGIRDMRPGGKRRIIIPPEL-------GPPVGPSTFFSAKQFEVFDVELLSVQ 238
E ++ M G I +P L G P+GP+ +F + L+SV+
Sbjct: 164 EALQLMPAGSTWEIYVPSGLAYGPRSVGGPIGPNETL------IFKIHLISVK 210
>pdb|2UZ5|A Chain A, Solution Structure Of The Fkbp-Domain Of Legionella
Pneumophila Mip
pdb|2VCD|A Chain A, Solution Structure Of The Fkbp-domain Of Legionella
Pneumophila Mip In Complex With Rapamycin
Length = 137
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 15/113 (13%)
Query: 133 SGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFE 192
SGL Y+ G G P V Y G G DST G PA ++ + ++PG+
Sbjct: 30 SGLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQV--SQVIPGWT 87
Query: 193 EGIRDMRPGGKRRIIIPPEL-------GPPVGPSTFFSAKQFEVFDVELLSVQ 238
E ++ M G I +P L G P+GP+ +F + L+SV+
Sbjct: 88 EALQLMPAGSTWEIYVPSGLAYGPRSVGGPIGPNETL------IFKIHLISVK 134
>pdb|4DIP|A Chain A, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|B Chain B, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|C Chain C, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|D Chain D, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|E Chain E, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|F Chain F, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|G Chain G, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|H Chain H, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|I Chain I, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|J Chain J, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
Length = 125
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 149 KDGQQVIFHYIGYNE-SGRRIDSTYLQ--GSPARIRMGTNALVPGFEEGIRDMRPGGKRR 205
K G ++ HY GY E G ST+ G P +G + G+++G++ M G KR+
Sbjct: 30 KGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEKRK 89
Query: 206 IIIPPELGPPVGPSTFFSAKQFEVFDVELLSVQD 239
+IIPP LG + +F+++LL +++
Sbjct: 90 LIIPPALGYGKEGKGKIPPESTLIFNIDLLEIRN 123
>pdb|1JVW|A Chain A, Trypanosoma Cruzi Macrophage Infectivity Potentiator
(Tcmip)
Length = 167
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
Query: 133 SGLIYRDFEVGKGD-CPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGF 191
SGL+++ G G P + HY G G DS+ +G P R N ++ G+
Sbjct: 37 SGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFR--PNEVIKGW 94
Query: 192 EEGIRDMRPGGKRRIIIPPELGPPV-GPSTFFSAKQFEVFDVELLSVQD 239
E ++ MR G + R+ IP +L V G FDVEL+S++D
Sbjct: 95 TEALQLMREGDRWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELISIKD 143
>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506
Binding Domain From Plasmodium Vivax
pdb|3IHZ|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3IHZ|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3NI6|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3NI6|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3PA7|A Chain A, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
pdb|3PA7|B Chain B, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
Length = 126
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Query: 136 IYRDFEVGKGDCPKDGQQVIFHYIGYNE-SGRRIDSTYLQGSPARIRMGTNALVPGFEEG 194
I R E G+ + PK G +V HY+G E SG+ DS+ + P + +G ++ G++
Sbjct: 21 ILRKGEGGEENAPKKGNEVTVHYVGKLESSGKVFDSSRERNVPFKFHLGQGEVIKGWDIC 80
Query: 195 IRDMRPGGKRRIIIPPELG-PPVGPSTFFSAKQFEVFDVELLSVQD 239
+ M K + + + G G +F++EL+S ++
Sbjct: 81 VASMTKNEKCSVRLDSKYGYGEEGCGESIPGNSVLIFEIELISFRE 126
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 10/126 (7%)
Query: 129 TKRDSGLIYRDFEVGKGD-CPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNAL 187
+K+D G++ VG G+ P G +V HY G +G++ DS++ + P +G +
Sbjct: 27 SKKDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQV 86
Query: 188 VPGFEEGIRDMRPGGKRRIIIPPELG---------PPVGPSTFFSAKQFEVFDVELLSVQ 238
+ ++ G+ M+ G ++ PE P + FF + + +LL
Sbjct: 87 IKAWDIGVATMKKGEICHLLCKPEYAYGATGSLPKIPSNATLFFEVELLDFKGEDLLEDG 146
Query: 239 DCQRRT 244
RRT
Sbjct: 147 GIIRRT 152
>pdb|3B7X|A Chain A, Crystal Structure Of Human Fk506-Binding Protein 6
Length = 134
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 12/115 (10%)
Query: 132 DSGLIYRDFEVGKGDCPKDGQQVIFHYIGYNES-GRRIDSTYLQGSPARIRMGTNALVPG 190
D G++ G GD V+ Y GY E R DS Y + +P +++G + + G
Sbjct: 25 DRGVLKDVIREGAGDLVAPDASVLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGEDITLWG 84
Query: 191 FEEGIRDMRPGGKRRIIIPPE-----LG-PPVGPSTFFSAKQFEVFDVELLSVQD 239
E G+ MR G R + P LG PP+ P +F++ELL D
Sbjct: 85 MELGLLSMRRGELARFLFKPNYAYGTLGCPPLIPPN-----TTVLFEIELLDFLD 134
>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I
pdb|3O5M|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5M|B Chain B, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5O|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iii
pdb|3O5P|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv
pdb|3O5Q|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv, In
Presence Of Dmso
pdb|3O5R|A Chain A, Complex Of Fk506 With The Fk1 Domain Mutant A19t Of Fkbp51
pdb|4DRQ|A Chain A, Exploration Of Pipecolate Sulfonamides As Binders Of The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-1-((S)-1-(3,5-
Dichlorophenylsulfonyl)piperidine-2-Carbonyloxy)-3-(3,
4-Dimethoxy - Phenyl)propyl)phenoxy)acetic Acid
pdb|4DRK|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRK|B Chain B, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRM|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRN|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRO|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
(1r)-3-(3,4-Dimethoxyphenyl)-1- Phenylpropyl
(2s)-1-{[(1r,2s)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidine-2-Carboxylate
pdb|4DRP|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-3-(3,4-
Dimethoxyphenyl)-1-((S)-1-(2-((1r,
2s)-2-Ethyl-1-Hydroxy-Cyclohexyl)-
2-Oxoacetyl)piperidine-2-
Carbonyloxy)propyl)phenoxy)acetic Acid From
Cocrystallization
Length = 128
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 129 TKRDSGLIYRDFEVGKGD-CPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNAL 187
+K+D G++ VG G+ P G +V HY G +G++ DS++ + P +G +
Sbjct: 15 SKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQV 74
Query: 188 VPGFEEGIRDMRPGGKRRIIIPPE 211
+ ++ G+ M+ G ++ PE
Sbjct: 75 IKAWDIGVATMKKGEICHLLCKPE 98
>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I
pdb|3O5I|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5I|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5J|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Iii
pdb|3O5K|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|C Chain C, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|D Chain D, Fk1 Domain Of Fkbp51, Crystal Form Viii
Length = 128
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 129 TKRDSGLIYRDFEVGKGD-CPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNAL 187
+K+D G++ VG G+ P G +V HY G +G++ DS++ + P +G +
Sbjct: 15 SKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQV 74
Query: 188 VPGFEEGIRDMRPGGKRRIIIPPE 211
+ ++ G+ M+ G ++ PE
Sbjct: 75 IKAWDIGVATMKKGEICHLLCKPE 98
>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi
pdb|3O5F|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vii
Length = 144
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 129 TKRDSGLIYRDFEVGKGD-CPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNAL 187
+K+D G++ VG G+ P G +V HY G +G++ DS++ + P +G +
Sbjct: 31 SKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQV 90
Query: 188 VPGFEEGIRDMRPGGKRRIIIPPE 211
+ ++ G+ M+ G ++ PE
Sbjct: 91 IKAWDIGVATMKKGEICHLLCKPE 114
>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRH|D Chain D, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRI|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 129 TKRDSGLIYRDFEVGKGD-CPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNAL 187
+K+D G++ VG G+ P G +V HY G +G++ DS++ + P +G +
Sbjct: 31 SKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQV 90
Query: 188 VPGFEEGIRDMRPGGKRRIIIPPE 211
+ ++ G+ M+ G ++ PE
Sbjct: 91 IKAWDIGVATMKKGEICHLLCKPE 114
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 129 TKRDSGLIYRDFEVGKGD-CPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNAL 187
+K+D G++ VG G+ P G +V HY G +G++ DS++ + P +G +
Sbjct: 27 SKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQV 86
Query: 188 VPGFEEGIRDMRPGGKRRIIIPPE 211
+ ++ G+ M+ G ++ PE
Sbjct: 87 IKAWDIGVATMKRGEICHLLCKPE 110
>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
pdb|2VN1|B Chain B, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
Length = 129
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 2/108 (1%)
Query: 136 IYRDFEVGKGDCPKDGQQVIFHYIGYNES-GRRIDSTYLQGSPARIRMGTNALVPGFEEG 194
I + + G+ + PK G +V HY+G ES G+ DS++ + P + + ++ G++
Sbjct: 22 ILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKGWDIC 81
Query: 195 IRDMRPGGKRRIIIPPELG-PPVGPSTFFSAKQFEVFDVELLSVQDCQ 241
+ MR K + I G G +F++ELLS ++ +
Sbjct: 82 VSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEIELLSFRELE 129
>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35
From Plasmodium Falciparum
Length = 135
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 2/108 (1%)
Query: 136 IYRDFEVGKGDCPKDGQQVIFHYIGYNES-GRRIDSTYLQGSPARIRMGTNALVPGFEEG 194
I + + G+ + PK G +V HY+G ES G+ DS++ + P + + ++ G++
Sbjct: 22 ILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKGWDIC 81
Query: 195 IRDMRPGGKRRIIIPPELG-PPVGPSTFFSAKQFEVFDVELLSVQDCQ 241
+ MR K + I G G +F++ELLS ++ +
Sbjct: 82 VSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEIELLSFRELE 129
>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
pdb|3O5D|B Chain B, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
Length = 264
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 129 TKRDSGLIYRDFEVGKGD-CPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNAL 187
+K+D G++ VG G+ P G +V HY G +G++ DS++ + P +G +
Sbjct: 31 SKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQV 90
Query: 188 VPGFEEGIRDMRPGGKRRIIIPPE 211
+ ++ G+ M+ G ++ PE
Sbjct: 91 IKAWDIGVATMKKGEICHLLCKPE 114
>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl
Isomerase
Length = 135
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 14/111 (12%)
Query: 130 KRDSGLIYRDFEVGKGDC-PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALV 188
K+D G++ + G+G P G V HY+G E+G + DS+ +G +G ++
Sbjct: 11 KKDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVI 70
Query: 189 PGFEEGIRDMRPGGKRRIII-----------PPELGPPVGPSTFFSAKQFE 228
G++ G+ M G I PP++ P G + F + FE
Sbjct: 71 KGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPPKI--PGGATLIFEVELFE 119
>pdb|1IX5|A Chain A, Solution Structure Of The Methanococcus
Thermolithotrophicus Fkbp
Length = 151
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 13/74 (17%)
Query: 151 GQQVIFHYIGYNESGRRIDSTYLQGS-------------PARIRMGTNALVPGFEEGIRD 197
G ++ YIG ESG D++ + + P +G L+ GFEE + D
Sbjct: 5 GVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLD 64
Query: 198 MRPGGKRRIIIPPE 211
M G ++ + IP E
Sbjct: 65 MEVGDEKTVKIPAE 78
>pdb|3PRB|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRB|B Chain B, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRD|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
Length = 231
Score = 33.9 bits (76), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 14/74 (18%)
Query: 151 GQQVIFHYIGYNESGRRIDSTYLQGS-------------PARIRMGTNALVPGFEEGIRD 197
G+ V Y GY + G+ D+T + + P I G ++PG +E I +
Sbjct: 5 GKMVKISYDGYVD-GKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILE 63
Query: 198 MRPGGKRRIIIPPE 211
M G +R +++PPE
Sbjct: 64 MDVGEEREVVLPPE 77
>pdb|3PR9|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRA|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRA|B Chain B, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
Length = 157
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 14/74 (18%)
Query: 151 GQQVIFHYIGYNESGRRIDST-------------YLQGSPARIRMGTNALVPGFEEGIRD 197
G+ V Y GY + G+ D+T + P I G ++PG +E I +
Sbjct: 5 GKMVKISYDGYVD-GKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILE 63
Query: 198 MRPGGKRRIIIPPE 211
M G +R +++PPE
Sbjct: 64 MDVGEEREVVLPPE 77
>pdb|3OE2|A Chain A, 1.6 A Crystal Structure Of Peptidyl-Prolyl Cis-Trans
Isomerase Ppiase From Pseudomonas Syringae Pv. Tomato
Str. Dc3000 (Pspto Dc3000)
Length = 219
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 18/111 (16%)
Query: 134 GLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEE 193
G++ + G G P +V Y+G G+ D + P R+ ++++ G+
Sbjct: 118 GILMTELTPGTGPKPDANGRVEVRYVGRLPDGKIFDQST---QPQWFRL--DSVISGWTS 172
Query: 194 GIRDMRPGGKRRIIIPPE-------LGPPVGPSTFFSAKQFEVFDVELLSV 237
+++M G K R++IP + G + P T VF++EL++V
Sbjct: 173 ALQNMPTGAKWRLVIPSDQAYGAEGAGDLIDPFTPL------VFEIELIAV 217
>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, Minimized Average Structure
pdb|1ROU|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, 22 Structures
Length = 149
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 14/113 (12%)
Query: 130 KRDSGLIYRDFEVGKG-DCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALV 188
K+D G++ G G + P G +V HY G+ G + DS+ + +G ++
Sbjct: 27 KQDEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVI 86
Query: 189 PGFEEGIRDMRPGGKRRIIIPPELG-------PPVGPSTFFSAKQFEVFDVEL 234
++ + M+ G RI PE P + P+ VF+VEL
Sbjct: 87 KAWDIAVATMKVGELCRITCKPEYAYGSAGSPPKIPPNATL------VFEVEL 133
>pdb|2KR7|A Chain A, Solution Structure Of Helicobacter Pylori Slyd
Length = 151
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 177 PARIRMGTNALVPGFEEGIRDMRPGGKRRIIIPPELGPPVGPSTFFSA---KQFEVFDVE 233
P +GTN ++ G E+ + + G ++I PE V S++ QFE ++E
Sbjct: 36 PLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYGVYESSYLQEVPRDQFEGIELE 95
>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
pdb|1N1A|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
Length = 140
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 14/114 (12%)
Query: 130 KRDSGLIYRDFEVGKG-DCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALV 188
K+D G++ G G + P G +V HY G+ G + DS+ + +G ++
Sbjct: 28 KQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVI 87
Query: 189 PGFEEGIRDMRPGGKRRIIIPPELG-------PPVGPSTFFSAKQFEVFDVELL 235
++ I M+ G I PE P + P+ VF+VEL
Sbjct: 88 KAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATL------VFEVELF 135
>pdb|4DT4|A Chain A, Crystal Structure Of The Ppiase-Chaperone Slpa With The
Chaperone Binding Site Occupied By The Linker Of The
Purification Tag
Length = 169
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 154 VIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRIIIPPE 211
V+ H+ + G +ST G PA R+G +L G E+ + ++ G K + P+
Sbjct: 31 VLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPD 88
>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 30.8 bits (68), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 14/113 (12%)
Query: 130 KRDSGLIYRDFEVGKG-DCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALV 188
K+D G++ G G + P G +V HY G+ G + DS+ + +G ++
Sbjct: 32 KQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVI 91
Query: 189 PGFEEGIRDMRPGGKRRIIIPPELG-------PPVGPSTFFSAKQFEVFDVEL 234
++ I M+ G I PE P + P+ VF+VEL
Sbjct: 92 KAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATL------VFEVEL 138
>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52
Length = 280
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 14/113 (12%)
Query: 130 KRDSGLIYRDFEVGKG-DCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALV 188
K+D G++ G G + P G +V HY G+ G + DS+ + +G ++
Sbjct: 48 KQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVI 107
Query: 189 PGFEEGIRDMRPGGKRRIIIPPELG-------PPVGPSTFFSAKQFEVFDVEL 234
++ I M+ G I PE P + P+ VF+VEL
Sbjct: 108 KAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATL------VFEVEL 154
>pdb|1T11|A Chain A, Trigger Factor
pdb|1T11|B Chain B, Trigger Factor
Length = 392
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 9/53 (16%)
Query: 146 DCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPAR---IRMGTNALVPGFEEGI 195
+ ++G++V ++G ID +G A + MG ++PGFE+GI
Sbjct: 159 EAAENGKRVSIDFVG------SIDGVEFEGGKAENFPLEMGAGRMIPGFEDGI 205
>pdb|1L1P|A Chain A, Solution Structure Of The Ppiase Domain From E. Coli
Trigger Factor
Length = 106
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 168 IDSTYLQGSPAR---IRMGTNALVPGFEEGIRDMRPG 201
+D +G A + MG ++PGFE+GI+ + G
Sbjct: 29 VDGEEFEGGKASDFVLAMGQGRMIPGFEDGIKGHKAG 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,735,810
Number of Sequences: 62578
Number of extensions: 347935
Number of successful extensions: 565
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 503
Number of HSP's gapped (non-prelim): 67
length of query: 254
length of database: 14,973,337
effective HSP length: 97
effective length of query: 157
effective length of database: 8,903,271
effective search space: 1397813547
effective search space used: 1397813547
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)