Query 025317
Match_columns 254
No_of_seqs 261 out of 1707
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 04:38:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025317.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025317hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0545 FkpA FKBP-type peptidy 100.0 2.8E-30 6.1E-35 214.2 12.7 119 118-238 86-205 (205)
2 TIGR03516 ppisom_GldI peptidyl 100.0 7.9E-29 1.7E-33 205.6 14.8 112 127-239 63-177 (177)
3 KOG0544 FKBP-type peptidyl-pro 100.0 8.5E-28 1.8E-32 174.6 11.3 105 134-238 2-108 (108)
4 PRK11570 peptidyl-prolyl cis-t 99.9 3.1E-26 6.6E-31 194.5 13.2 120 117-238 86-206 (206)
5 KOG0549 FKBP-type peptidyl-pro 99.9 7E-26 1.5E-30 184.3 13.5 115 133-247 68-185 (188)
6 KOG0552 FKBP-type peptidyl-pro 99.9 2.2E-25 4.9E-30 189.0 12.9 109 129-238 116-226 (226)
7 PRK10902 FKBP-type peptidyl-pr 99.9 1.5E-24 3.2E-29 190.6 14.2 125 117-243 130-254 (269)
8 PF00254 FKBP_C: FKBP-type pep 99.8 1.3E-20 2.9E-25 140.5 11.2 89 147-235 4-94 (94)
9 KOG0543 FKBP-type peptidyl-pro 99.7 1.2E-16 2.7E-21 144.8 15.3 133 104-248 63-201 (397)
10 PRK15095 FKBP-type peptidyl-pr 99.7 5.6E-17 1.2E-21 132.2 9.8 70 147-216 4-73 (156)
11 COG1047 SlpA FKBP-type peptidy 99.6 4.4E-15 9.5E-20 121.5 9.9 70 147-216 2-71 (174)
12 PRK10737 FKBP-type peptidyl-pr 99.6 1.4E-14 2.9E-19 121.7 9.6 69 147-216 2-70 (196)
13 TIGR00115 tig trigger factor. 99.1 5.7E-10 1.2E-14 104.2 11.0 89 146-241 145-233 (408)
14 KOG0543 FKBP-type peptidyl-pro 99.0 3.3E-10 7.3E-15 103.2 6.3 81 141-235 1-82 (397)
15 PRK01490 tig trigger factor; P 99.0 2.7E-09 5.9E-14 100.5 11.3 88 146-240 156-243 (435)
16 COG0544 Tig FKBP-type peptidyl 98.9 2.9E-09 6.3E-14 100.0 9.1 87 148-241 158-244 (441)
17 KOG0545 Aryl-hydrocarbon recep 98.0 2.6E-06 5.6E-11 73.7 1.7 80 132-211 9-92 (329)
18 KOG0549 FKBP-type peptidyl-pro 97.3 0.00024 5.1E-09 58.7 3.3 54 181-237 2-55 (188)
19 PRK10081 entericidin B membran 80.7 1.5 3.2E-05 28.4 2.1 22 58-80 2-23 (48)
20 PF07172 GRP: Glycine rich pro 73.3 3.6 7.8E-05 30.6 2.8 21 58-78 1-21 (95)
21 PF01272 GreA_GreB: Transcript 72.2 16 0.00035 25.7 5.9 23 188-210 43-65 (77)
22 PRK05892 nucleoside diphosphat 63.2 53 0.0012 26.6 7.9 36 188-240 122-157 (158)
23 PRK05753 nucleoside diphosphat 58.9 72 0.0016 25.2 7.8 23 188-210 92-114 (137)
24 PRK00226 greA transcription el 56.9 52 0.0011 26.5 6.8 23 188-210 123-145 (157)
25 TIGR01461 greB transcription e 54.0 60 0.0013 26.3 6.7 23 188-210 120-142 (156)
26 TIGR02122 TRAP_TAXI TRAP trans 53.5 9.2 0.0002 33.7 2.1 24 58-81 1-24 (320)
27 COG5510 Predicted small secret 53.5 12 0.00026 23.7 1.9 21 58-79 2-22 (44)
28 TIGR01462 greA transcription e 50.1 86 0.0019 25.0 7.1 23 188-210 118-140 (151)
29 PF08139 LPAM_1: Prokaryotic m 49.4 20 0.00042 20.0 2.2 19 58-80 6-24 (25)
30 PF05481 Myco_19_kDa: Mycobact 48.6 6.3 0.00014 32.2 0.2 26 58-83 1-26 (160)
31 COG5567 Predicted small peripl 44.0 21 0.00045 23.8 2.0 24 58-83 1-24 (58)
32 PRK11653 hypothetical protein; 44.0 20 0.00044 30.9 2.6 27 57-83 11-41 (225)
33 PRK02998 prsA peptidylprolyl i 43.9 17 0.00037 32.3 2.2 22 184-205 186-207 (283)
34 PF01346 FKBP_N: Domain amino 43.3 8.1 0.00017 29.6 0.1 23 117-139 102-124 (124)
35 PRK10523 lipoprotein involved 42.3 86 0.0019 27.3 6.2 24 58-83 2-25 (234)
36 PRK01885 greB transcription el 41.5 1E+02 0.0023 24.9 6.3 23 188-210 122-144 (157)
37 PF11874 DUF3394: Domain of un 40.7 76 0.0016 26.5 5.5 56 147-210 71-130 (183)
38 PRK09810 entericidin A; Provis 39.1 26 0.00057 21.9 1.9 20 58-81 2-21 (41)
39 PHA02122 hypothetical protein 37.9 56 0.0012 21.9 3.3 20 149-169 39-58 (65)
40 PRK06760 hypothetical protein; 37.4 20 0.00043 30.8 1.5 31 58-89 1-31 (223)
41 PF12262 Lipase_bact_N: Bacter 36.5 25 0.00055 31.2 2.1 24 58-84 1-24 (268)
42 PF10907 DUF2749: Protein of u 36.0 52 0.0011 22.7 3.1 14 58-71 1-14 (66)
43 PF05688 DUF824: Salmonella re 34.4 67 0.0014 20.7 3.3 35 146-185 7-41 (47)
44 PRK01326 prsA foldase protein 34.3 32 0.0007 31.0 2.5 22 185-206 197-218 (310)
45 COG2980 RlpB Rare lipoprotein 34.0 27 0.00058 29.0 1.7 22 58-82 1-22 (178)
46 PF13627 LPAM_2: Prokaryotic l 32.1 42 0.0009 18.5 1.7 11 73-83 9-19 (24)
47 PRK15396 murein lipoprotein; P 31.9 54 0.0012 23.5 2.8 25 58-83 1-25 (78)
48 PF05984 Cytomega_UL20A: Cytom 31.7 48 0.001 24.1 2.5 22 58-79 1-22 (100)
49 PRK09973 putative outer membra 31.1 57 0.0012 23.8 2.8 24 58-83 1-24 (85)
50 PRK10540 lipoprotein; Provisio 30.1 51 0.0011 23.2 2.4 22 58-80 4-25 (72)
51 PF14466 DUF4425: Domain of un 28.9 41 0.00089 26.1 1.9 11 73-83 8-18 (121)
52 COG0782 Uncharacterized conser 28.0 3.2E+02 0.0069 21.9 7.6 22 188-209 116-137 (151)
53 PRK13792 lysozyme inhibitor; P 27.9 50 0.0011 25.9 2.3 23 58-83 1-23 (127)
54 TIGR03096 nitroso_cyanin nitro 27.7 3.1E+02 0.0067 21.7 8.3 63 132-213 43-111 (135)
55 COG4939 Major membrane immunog 27.3 2E+02 0.0043 22.7 5.4 21 147-167 53-73 (147)
56 COG5633 Predicted periplasmic 26.5 1.2E+02 0.0025 23.6 4.0 16 149-164 65-80 (123)
57 COG2834 LolA Outer membrane li 26.1 1.8E+02 0.0039 24.5 5.6 14 228-241 177-190 (211)
58 PF07076 DUF1344: Protein of u 25.3 1.8E+02 0.004 19.8 4.3 39 128-168 18-56 (61)
59 PRK11548 outer membrane biogen 24.5 59 0.0013 24.7 2.1 22 58-81 1-22 (113)
60 TIGR03042 PS_II_psbQ_bact phot 22.8 2.2E+02 0.0048 22.8 5.1 24 60-85 2-25 (142)
61 PRK15324 type III secretion sy 21.7 1.4E+02 0.003 26.3 4.1 24 75-98 14-37 (252)
62 PF09122 DUF1930: Domain of un 21.3 1.4E+02 0.003 20.5 3.1 23 189-211 35-57 (68)
63 PF00970 FAD_binding_6: Oxidor 20.7 3.2E+02 0.0068 19.3 6.4 59 147-210 29-94 (99)
64 PF11254 DUF3053: Protein of u 20.2 1E+02 0.0022 26.7 2.9 22 61-83 2-23 (229)
65 COG4808 Uncharacterized protei 20.1 73 0.0016 25.4 1.8 16 66-81 10-25 (152)
No 1
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.8e-30 Score=214.19 Aligned_cols=119 Identities=37% Similarity=0.666 Sum_probs=108.6
Q ss_pred ceeeeeeccCceeCCCceEEEEEeccCCCCCCCCCeEEEEEEEEEcCCcEEeccccCCCCeeEecCCCCchhHHHHHHcc
Q 025317 118 FEVKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRD 197 (254)
Q Consensus 118 ~~~~~~~~~~~~~~~~Gl~y~i~~~G~G~~~~~gd~V~v~Y~~~~~dG~v~dst~~~~~p~~~~lG~~~~i~Gl~~aL~~ 197 (254)
|.........+.++++||.|++++.|+|..++.+|.|+|||+|++.||++||+++.+++|+.|.+| ++|+||.+||.+
T Consensus 86 f~~~~~k~~~v~~~~sgl~y~~~~~G~G~~~~~~~~V~vhY~G~l~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~~ 163 (205)
T COG0545 86 FLEKNAKEKGVKTLPSGLQYKVLKAGDGAAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQG 163 (205)
T ss_pred HHhhhcccCCceECCCCcEEEEEeccCCCCCCCCCEEEEEEEEecCCCCccccccccCCCceeecC--CeeehHHHHHhh
Confidence 344445556778899999999999999999999999999999999999999999999999999996 999999999999
Q ss_pred CCCccEEEEEECCCCCCCCCC-CCCCCCCceEEEEEEEEeee
Q 025317 198 MRPGGKRRIIIPPELGPPVGP-STFFSAKQFEVFDVELLSVQ 238 (254)
Q Consensus 198 mk~Ge~~~i~iP~~layG~~~-~~~ip~~s~Lvf~vel~~i~ 238 (254)
|++|++|+++||+++|||... +..||||++|+|+|+|++|.
T Consensus 164 M~vG~k~~l~IP~~laYG~~g~~g~Ippns~LvFeVeLl~v~ 205 (205)
T COG0545 164 MKVGGKRKLTIPPELAYGERGVPGVIPPNSTLVFEVELLDVK 205 (205)
T ss_pred CCCCceEEEEeCchhccCcCCCCCCCCCCCeEEEEEEEEecC
Confidence 999999999999999999544 55599999999999999874
No 2
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.96 E-value=7.9e-29 Score=205.63 Aligned_cols=112 Identities=21% Similarity=0.334 Sum_probs=102.8
Q ss_pred CceeCCCceEEEEEec--cCCCCCCCCCeEEEEEEEEEcCCcEEeccccCCCCeeEecCCCCchhHHHHHHccCCCccEE
Q 025317 127 NYTKRDSGLIYRDFEV--GKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKR 204 (254)
Q Consensus 127 ~~~~~~~Gl~y~i~~~--G~G~~~~~gd~V~v~Y~~~~~dG~v~dst~~~~~p~~~~lG~~~~i~Gl~~aL~~mk~Ge~~ 204 (254)
++.++++|++|+++++ |+|..|+.||.|++||++++.||++|++++. ..|+.|.+|.+++++||+++|.+|++||++
T Consensus 63 ~~~~t~sGl~Y~v~~~~~g~g~~p~~gd~V~v~Y~~~~~dG~v~~ss~~-~~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~ 141 (177)
T TIGR03516 63 KYETSQNGFWYYYNQKDTGEGTTPEFGDLVTFEYDIRALDGDVIYSEEE-LGPQTYKVDQQDLFSGLRDGLKLMKEGETA 141 (177)
T ss_pred CceECCCccEEEEEEecCCCCCcCCCCCEEEEEEEEEeCCCCEEEeCCC-CCCEEEEeCCcchhHHHHHHHcCCCCCCEE
Confidence 5677899999999876 6667899999999999999999999999987 459999999999999999999999999999
Q ss_pred EEEECCCCCCC-CCCCCCCCCCceEEEEEEEEeeec
Q 025317 205 RIIIPPELGPP-VGPSTFFSAKQFEVFDVELLSVQD 239 (254)
Q Consensus 205 ~i~iP~~layG-~~~~~~ip~~s~Lvf~vel~~i~~ 239 (254)
+|+||+++||| .+....||||++|+|+|+|++|++
T Consensus 142 ~~~iP~~~AYG~~g~~~~Ippns~L~f~IeL~~i~~ 177 (177)
T TIGR03516 142 TFLFPSHKAYGYYGDQNKIGPNLPIISTVTLLNIKP 177 (177)
T ss_pred EEEECHHHcCCCCCCCCCcCcCCcEEEEEEEEEecC
Confidence 99999999999 556678999999999999999963
No 3
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=8.5e-28 Score=174.65 Aligned_cols=105 Identities=32% Similarity=0.592 Sum_probs=100.1
Q ss_pred ceEEEEEeccCC-CCCCCCCeEEEEEEEEEcCCcEEeccccCCCCeeEecCCCCchhHHHHHHccCCCccEEEEEECCCC
Q 025317 134 GLIYRDFEVGKG-DCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRIIIPPEL 212 (254)
Q Consensus 134 Gl~y~i~~~G~G-~~~~~gd~V~v~Y~~~~~dG~v~dst~~~~~p~~~~lG~~~~i~Gl~~aL~~mk~Ge~~~i~iP~~l 212 (254)
|+..+++.+|+| ..++.||.|++||++.+.||+.|||+.+++.|+.|.+|.+++|.||++++..|.+||+.++.|+|++
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti~pd~ 81 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSRDRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTISPDY 81 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeecccccCCCeeEEecCcceeechhhcchhccccccceeeecccc
Confidence 678899999999 5899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-CCCCCCCCCCceEEEEEEEEeee
Q 025317 213 GPP-VGPSTFFSAKQFEVFDVELLSVQ 238 (254)
Q Consensus 213 ayG-~~~~~~ip~~s~Lvf~vel~~i~ 238 (254)
||| .+.+..||||++|+|+|||+++.
T Consensus 82 aYG~~G~p~~IppNatL~FdVEll~v~ 108 (108)
T KOG0544|consen 82 AYGPRGHPGGIPPNATLVFDVELLKVN 108 (108)
T ss_pred ccCCCCCCCccCCCcEEEEEEEEEecC
Confidence 999 67778899999999999999873
No 4
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.94 E-value=3.1e-26 Score=194.47 Aligned_cols=120 Identities=30% Similarity=0.468 Sum_probs=109.6
Q ss_pred cceeeeeeccCceeCCCceEEEEEeccCCCCCCCCCeEEEEEEEEEcCCcEEeccccCCCCeeEecCCCCchhHHHHHHc
Q 025317 117 GFEVKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIR 196 (254)
Q Consensus 117 ~~~~~~~~~~~~~~~~~Gl~y~i~~~G~G~~~~~gd~V~v~Y~~~~~dG~v~dst~~~~~p~~~~lG~~~~i~Gl~~aL~ 196 (254)
.|...+...+++.++++|++|+++++|+|..|+.||.|.|||++++.||++||++|..+.|+.|.+| .+++||+++|.
T Consensus 86 ~fl~~~~k~~gv~~t~sGl~y~vi~~G~G~~p~~~d~V~v~Y~g~l~dG~vfdss~~~g~P~~f~l~--~vipG~~eaL~ 163 (206)
T PRK11570 86 KFLEENAKKEGVNSTESGLQFRVLTQGEGAIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVN--GVIPGWIEALT 163 (206)
T ss_pred HHHHHhhhcCCcEECCCCcEEEEEeCCCCCCCCCCCEEEEEEEEEECCCCEEEeccCCCCCeEEEee--chhhHHHHHHc
Confidence 3455556677889999999999999999999999999999999999999999999988899999995 69999999999
Q ss_pred cCCCccEEEEEECCCCCCCC-CCCCCCCCCceEEEEEEEEeee
Q 025317 197 DMRPGGKRRIIIPPELGPPV-GPSTFFSAKQFEVFDVELLSVQ 238 (254)
Q Consensus 197 ~mk~Ge~~~i~iP~~layG~-~~~~~ip~~s~Lvf~vel~~i~ 238 (254)
+|++|++++++||++++||. +....||||++|+|+|||++|+
T Consensus 164 ~M~~G~k~~~~IP~~lAYG~~g~~~~Ipp~s~Lif~veLl~i~ 206 (206)
T PRK11570 164 LMPVGSKWELTIPHELAYGERGAGASIPPFSTLVFEVELLEIL 206 (206)
T ss_pred CCCCCCEEEEEECHHHcCCCCCCCCCcCCCCeEEEEEEEEEEC
Confidence 99999999999999999994 4556799999999999999983
No 5
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=7e-26 Score=184.30 Aligned_cols=115 Identities=29% Similarity=0.525 Sum_probs=100.8
Q ss_pred CceEEEEEecc--CCCCCCCCCeEEEEEEEEEcCCcEEeccccCCCCeeEecCCCCchhHHHHHHccCCCccEEEEEECC
Q 025317 133 SGLIYRDFEVG--KGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRIIIPP 210 (254)
Q Consensus 133 ~Gl~y~i~~~G--~G~~~~~gd~V~v~Y~~~~~dG~v~dst~~~~~p~~~~lG~~~~i~Gl~~aL~~mk~Ge~~~i~iP~ 210 (254)
+++...+++.- -..+.+.||.|.+||++.+.||++|||||.+++|++|++|.+++|+||+.+|.+|++||++.++|||
T Consensus 68 ~~l~I~v~~~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp 147 (188)
T KOG0549|consen 68 EELQIGVLKKPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPP 147 (188)
T ss_pred CceeEEEEECCccccccccCCCEEEEEEEEEecCCCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhCcccceEEecCc
Confidence 45555554442 2357899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC-CCCCCCCCCCceEEEEEEEEeeecCCcccCce
Q 025317 211 ELGPP-VGPSTFFSAKQFEVFDVELLSVQDCQRRTIGF 247 (254)
Q Consensus 211 ~layG-~~~~~~ip~~s~Lvf~vel~~i~~~~~~~~~~ 247 (254)
++||| .+.+..||++++|+|+|||+++.+.++...+|
T Consensus 148 ~LgYG~~G~~~~IP~~A~LiFdiELv~i~~~~~~~~~f 185 (188)
T KOG0549|consen 148 HLGYGERGAPPKIPGDAVLIFDIELVKIERGPPEAKLF 185 (188)
T ss_pred cccCccCCCCCCCCCCeeEEEEEEEEEeecCCCccccc
Confidence 99999 56566699999999999999999987765544
No 6
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.2e-25 Score=188.97 Aligned_cols=109 Identities=40% Similarity=0.717 Sum_probs=103.9
Q ss_pred eeCCCceEEEEEeccCCCCCCCCCeEEEEEEEEEc-CCcEEeccccCCCCee-EecCCCCchhHHHHHHccCCCccEEEE
Q 025317 129 TKRDSGLIYRDFEVGKGDCPKDGQQVIFHYIGYNE-SGRRIDSTYLQGSPAR-IRMGTNALVPGFEEGIRDMRPGGKRRI 206 (254)
Q Consensus 129 ~~~~~Gl~y~i~~~G~G~~~~~gd~V~v~Y~~~~~-dG~v~dst~~~~~p~~-~~lG~~~~i~Gl~~aL~~mk~Ge~~~i 206 (254)
.++++||.|++++.|+|+.+..|+.|.+||.+++. +|++||+++. +.|+. |.+|.+++|+||+.++.+|++|++|+|
T Consensus 116 ~tl~~Gl~y~D~~vG~G~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~-~kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRrv 194 (226)
T KOG0552|consen 116 RTLPGGLRYEDLRVGSGPSAKKGKRVSVRYIGKLKGNGKVFDSNFG-GKPFKLFRLGSGEVIKGWDVGVEGMKVGGKRRV 194 (226)
T ss_pred eecCCCcEEEEEEecCCCCCCCCCEEEEEEEEEecCCCeEeecccC-CCCccccccCCCCCCchHHHhhhhhccCCeeEE
Confidence 56789999999999999999999999999999999 9999999987 67999 999999999999999999999999999
Q ss_pred EECCCCCCCCCCCCCCCCCceEEEEEEEEeee
Q 025317 207 IIPPELGPPVGPSTFFSAKQFEVFDVELLSVQ 238 (254)
Q Consensus 207 ~iP~~layG~~~~~~ip~~s~Lvf~vel~~i~ 238 (254)
+|||++|||....+.||||++|+|+|||+.|.
T Consensus 195 iIPp~lgYg~~g~~~IppnstL~fdVEL~~v~ 226 (226)
T KOG0552|consen 195 IIPPELGYGKKGVPEIPPNSTLVFDVELLSVK 226 (226)
T ss_pred EeCccccccccCcCcCCCCCcEEEEEEEEecC
Confidence 99999999987778999999999999999874
No 7
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.92 E-value=1.5e-24 Score=190.63 Aligned_cols=125 Identities=31% Similarity=0.640 Sum_probs=112.9
Q ss_pred cceeeeeeccCceeCCCceEEEEEeccCCCCCCCCCeEEEEEEEEEcCCcEEeccccCCCCeeEecCCCCchhHHHHHHc
Q 025317 117 GFEVKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIR 196 (254)
Q Consensus 117 ~~~~~~~~~~~~~~~~~Gl~y~i~~~G~G~~~~~gd~V~v~Y~~~~~dG~v~dst~~~~~p~~~~lG~~~~i~Gl~~aL~ 196 (254)
.|...+...+++.++++|++|+++++|+|..|+.||.|.|||++++.||++|++++..+.|+.|.+ +.+++||+++|.
T Consensus 130 ~fl~~~~k~~gv~~t~sGl~y~Vi~~G~G~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l--~~vipG~~EaL~ 207 (269)
T PRK10902 130 KYREKFAKEKGVKTTSTGLLYKVEKEGTGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--DGVIPGWTEGLK 207 (269)
T ss_pred HHHHHhccCCCcEECCCccEEEEEeCCCCCCCCCCCEEEEEEEEEeCCCCEeeccccCCCceEEec--CCcchHHHHHHh
Confidence 455556667788899999999999999999999999999999999999999999998888999988 469999999999
Q ss_pred cCCCccEEEEEECCCCCCCCCCCCCCCCCceEEEEEEEEeeecCCcc
Q 025317 197 DMRPGGKRRIIIPPELGPPVGPSTFFSAKQFEVFDVELLSVQDCQRR 243 (254)
Q Consensus 197 ~mk~Ge~~~i~iP~~layG~~~~~~ip~~s~Lvf~vel~~i~~~~~~ 243 (254)
+|++|++++|+||++++||......||||++|+|+|+|++|++.+..
T Consensus 208 ~Mk~Gek~~l~IP~~laYG~~g~~gIppns~LvfeVeLl~V~~~~~~ 254 (269)
T PRK10902 208 NIKKGGKIKLVIPPELAYGKAGVPGIPANSTLVFDVELLDVKPAPKA 254 (269)
T ss_pred cCCCCcEEEEEECchhhCCCCCCCCCCCCCcEEEEEEEEEeccCccc
Confidence 99999999999999999996555679999999999999999876544
No 8
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.85 E-value=1.3e-20 Score=140.55 Aligned_cols=89 Identities=37% Similarity=0.697 Sum_probs=83.2
Q ss_pred CCCCCCeEEEEEEEEEcCCcEEeccccCCCCeeEecCCCCchhHHHHHHccCCCccEEEEEECCCCCCCCCC--CCCCCC
Q 025317 147 CPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRIIIPPELGPPVGP--STFFSA 224 (254)
Q Consensus 147 ~~~~gd~V~v~Y~~~~~dG~v~dst~~~~~p~~~~lG~~~~i~Gl~~aL~~mk~Ge~~~i~iP~~layG~~~--~~~ip~ 224 (254)
+++.||.|++||++++.+|++|++++..+.|+.|.+|.+.+++||+++|.+|++||+++|+||++++||..+ ...||+
T Consensus 4 ~~~~gd~V~i~y~~~~~~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~~~ip~ 83 (94)
T PF00254_consen 4 TPKEGDTVTIHYTGRLEDGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEPPKIPP 83 (94)
T ss_dssp SBSTTSEEEEEEEEEETTSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCTTTBTT
T ss_pred cCCCCCEEEEEEEEEECCCcEEEEeeecCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCCCCcCC
Confidence 589999999999999999999999988889999999999999999999999999999999999999999443 345999
Q ss_pred CceEEEEEEEE
Q 025317 225 KQFEVFDVELL 235 (254)
Q Consensus 225 ~s~Lvf~vel~ 235 (254)
+++|+|+|+|+
T Consensus 84 ~~~l~f~Iell 94 (94)
T PF00254_consen 84 NSTLVFEIELL 94 (94)
T ss_dssp TSEEEEEEEEE
T ss_pred CCeEEEEEEEC
Confidence 99999999996
No 9
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.2e-16 Score=144.82 Aligned_cols=133 Identities=25% Similarity=0.359 Sum_probs=109.0
Q ss_pred cCCCCCCCccccccceeeeeeccCceeCCCceEEEEEeccCC--CCCCCCCeEEEEEEEEEcCCcEEeccccCCCCeeEe
Q 025317 104 NSAPEGFPNFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKG--DCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIR 181 (254)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gl~y~i~~~G~G--~~~~~gd~V~v~Y~~~~~dG~v~dst~~~~~p~~~~ 181 (254)
...++.+|......|..... +.+|..+++++|.| ..|.+|..|.|||.+++.++ +|+++ ...+.|.
T Consensus 63 ~~~pp~ip~~a~l~fe~el~--------Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~---~~~fe~~ 130 (397)
T KOG0543|consen 63 AGSPPKIPSNATLLFEVELL--------DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQR---ELRFEFG 130 (397)
T ss_pred cCCCCCCCCCcceeeeeccc--------CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-ceecc---ccceEEe
Confidence 34455566666555543322 78999999999999 58999999999999999777 77766 4458888
Q ss_pred cCC-CCchhHHHHHHccCCCccEEEEEECCCCCCC--CCCCCCCCCCceEEEEEEEEeee-cCCcccCcee
Q 025317 182 MGT-NALVPGFEEGIRDMRPGGKRRIIIPPELGPP--VGPSTFFSAKQFEVFDVELLSVQ-DCQRRTIGFY 248 (254)
Q Consensus 182 lG~-~~~i~Gl~~aL~~mk~Ge~~~i~iP~~layG--~~~~~~ip~~s~Lvf~vel~~i~-~~~~~~~~~~ 248 (254)
.|. ..++.||+.+|..|++||...|+|+|.++|| .+.+..||||++|.|+|+|+++. +....+.++.
T Consensus 131 ~Ge~~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f~~~~~~s~~~~~ 201 (397)
T KOG0543|consen 131 EGEDIDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGEPPLIPPNATLLYEVELLDFELKEDESWKMFA 201 (397)
T ss_pred cCCccchhHHHHHHHHhcCccceEEEEeCcccccCCCCCCCCCCCCCceEEEEEEEEeeecCcccccccch
Confidence 888 5899999999999999999999999999999 45567799999999999999999 6666655543
No 10
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.71 E-value=5.6e-17 Score=132.20 Aligned_cols=70 Identities=26% Similarity=0.445 Sum_probs=67.0
Q ss_pred CCCCCCeEEEEEEEEEcCCcEEeccccCCCCeeEecCCCCchhHHHHHHccCCCccEEEEEECCCCCCCC
Q 025317 147 CPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRIIIPPELGPPV 216 (254)
Q Consensus 147 ~~~~gd~V~v~Y~~~~~dG~v~dst~~~~~p~~~~lG~~~~i~Gl~~aL~~mk~Ge~~~i~iP~~layG~ 216 (254)
.++.|+.|++||++++.||++||+|+..+.|+.|.+|.+++++||+++|.+|++|+++++.|||++|||.
T Consensus 4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~ 73 (156)
T PRK15095 4 SVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGV 73 (156)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCC
Confidence 5789999999999999999999999877899999999999999999999999999999999999999984
No 11
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=4.4e-15 Score=121.49 Aligned_cols=70 Identities=29% Similarity=0.389 Sum_probs=66.6
Q ss_pred CCCCCCeEEEEEEEEEcCCcEEeccccCCCCeeEecCCCCchhHHHHHHccCCCccEEEEEECCCCCCCC
Q 025317 147 CPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRIIIPPELGPPV 216 (254)
Q Consensus 147 ~~~~gd~V~v~Y~~~~~dG~v~dst~~~~~p~~~~lG~~~~i~Gl~~aL~~mk~Ge~~~i~iP~~layG~ 216 (254)
++++||.|.+||++++.||++||+|.....|+.|.+|.+++++||+++|.+|.+|++.++.|||+.|||.
T Consensus 2 ~i~k~~~V~i~Y~~~~~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe 71 (174)
T COG1047 2 KIEKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGE 71 (174)
T ss_pred cccCCCEEEEEEEEEecCCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCC
Confidence 5789999999999999999999999776779999999999999999999999999999999999999984
No 12
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.56 E-value=1.4e-14 Score=121.72 Aligned_cols=69 Identities=17% Similarity=0.219 Sum_probs=65.5
Q ss_pred CCCCCCeEEEEEEEEEcCCcEEeccccCCCCeeEecCCCCchhHHHHHHccCCCccEEEEEECCCCCCCC
Q 025317 147 CPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRIIIPPELGPPV 216 (254)
Q Consensus 147 ~~~~gd~V~v~Y~~~~~dG~v~dst~~~~~p~~~~lG~~~~i~Gl~~aL~~mk~Ge~~~i~iP~~layG~ 216 (254)
++++++.|+++|++++.||++|++|+. ..|+.|.+|.++++++|+++|.+|++|++.+|.|||+.|||.
T Consensus 2 kI~~~~vV~l~Y~l~~~dG~v~dst~~-~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe 70 (196)
T PRK10737 2 KVAKDLVVSLAYQVRTEDGVLVDESPV-SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQ 70 (196)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEecCC-CCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCC
Confidence 478899999999999999999999976 679999999999999999999999999999999999999984
No 13
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=99.10 E-value=5.7e-10 Score=104.21 Aligned_cols=89 Identities=19% Similarity=0.389 Sum_probs=78.5
Q ss_pred CCCCCCCeEEEEEEEEEcCCcEEeccccCCCCeeEecCCCCchhHHHHHHccCCCccEEEEEECCCCCCCCCCCCCCCCC
Q 025317 146 DCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRIIIPPELGPPVGPSTFFSAK 225 (254)
Q Consensus 146 ~~~~~gd~V~v~Y~~~~~dG~v~dst~~~~~p~~~~lG~~~~i~Gl~~aL~~mk~Ge~~~i~iP~~layG~~~~~~ip~~ 225 (254)
..++.||.|+++|+++. +|+.++++. ..++.|.+|.+.+++||+++|.||++|++++|.+++...|+.... +|
T Consensus 145 ~~~~~gD~V~v~~~~~~-dg~~~~~~~--~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~----~g 217 (408)
T TIGR00115 145 RAAEKGDRVTIDFEGFI-DGEAFEGGK--AENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL----AG 217 (408)
T ss_pred cccCCCCEEEEEEEEEE-CCEECcCCC--CCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccC----CC
Confidence 35789999999999986 899998873 578999999999999999999999999999999999888875443 68
Q ss_pred ceEEEEEEEEeeecCC
Q 025317 226 QFEVFDVELLSVQDCQ 241 (254)
Q Consensus 226 s~Lvf~vel~~i~~~~ 241 (254)
.++.|+|+|.+|+...
T Consensus 218 k~~~f~v~i~~I~~~~ 233 (408)
T TIGR00115 218 KEATFKVTVKEVKEKE 233 (408)
T ss_pred CeEEEEEEEEEeccCC
Confidence 9999999999997653
No 14
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=3.3e-10 Score=103.24 Aligned_cols=81 Identities=30% Similarity=0.596 Sum_probs=73.4
Q ss_pred eccCCC-CCCCCCeEEEEEEEEEcCCcEEeccccCCCCeeEecCCCCchhHHHHHHccCCCccEEEEEECCCCCCCCCCC
Q 025317 141 EVGKGD-CPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRIIIPPELGPPVGPS 219 (254)
Q Consensus 141 ~~G~G~-~~~~gd~V~v~Y~~~~~dG~v~dst~~~~~p~~~~lG~~~~i~Gl~~aL~~mk~Ge~~~i~iP~~layG~~~~ 219 (254)
++|+|. .|..||.|.+||++++.||+.||++.+ +.|+.|.+|.+.+|.||..++..|+.|+ .+.+
T Consensus 1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d-~~~~~~~lg~g~vi~~~~~gv~tm~~g~-------------~~~p 66 (397)
T KOG0543|consen 1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRD-GDPFKFDLGKGSVIKGWDLGVATMKKGE-------------AGSP 66 (397)
T ss_pred CCCCCccCCCCCceeEEEEeEEecCCeecccccC-CCceeeecCCCccccccccccccccccc-------------cCCC
Confidence 468885 799999999999999999999999998 8899999999999999999999999822 4667
Q ss_pred CCCCCCceEEEEEEEE
Q 025317 220 TFFSAKQFEVFDVELL 235 (254)
Q Consensus 220 ~~ip~~s~Lvf~vel~ 235 (254)
+.||++.+|.|+|+|+
T Consensus 67 p~ip~~a~l~fe~el~ 82 (397)
T KOG0543|consen 67 PKIPSNATLLFEVELL 82 (397)
T ss_pred CCCCCCcceeeeeccc
Confidence 7899999999999985
No 15
>PRK01490 tig trigger factor; Provisional
Probab=99.00 E-value=2.7e-09 Score=100.50 Aligned_cols=88 Identities=19% Similarity=0.383 Sum_probs=77.8
Q ss_pred CCCCCCCeEEEEEEEEEcCCcEEeccccCCCCeeEecCCCCchhHHHHHHccCCCccEEEEEECCCCCCCCCCCCCCCCC
Q 025317 146 DCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRIIIPPELGPPVGPSTFFSAK 225 (254)
Q Consensus 146 ~~~~~gd~V~v~Y~~~~~dG~v~dst~~~~~p~~~~lG~~~~i~Gl~~aL~~mk~Ge~~~i~iP~~layG~~~~~~ip~~ 225 (254)
..++.||.|+++|.++. ||+.|+++ ...++.|.+|.+.+++||+++|.||++|+++.|.++....|+.... +|
T Consensus 156 ~~~~~gD~V~vd~~~~~-~g~~~~~~--~~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l----ag 228 (435)
T PRK01490 156 RPAENGDRVTIDFVGSI-DGEEFEGG--KAEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL----AG 228 (435)
T ss_pred ccCCCCCEEEEEEEEEE-CCEECcCC--CCCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccC----CC
Confidence 35799999999999997 89999876 3468999999999999999999999999999999998888875443 57
Q ss_pred ceEEEEEEEEeeecC
Q 025317 226 QFEVFDVELLSVQDC 240 (254)
Q Consensus 226 s~Lvf~vel~~i~~~ 240 (254)
.++.|+|+|.+|+..
T Consensus 229 k~~~f~v~v~~V~~~ 243 (435)
T PRK01490 229 KEATFKVTVKEVKEK 243 (435)
T ss_pred CeEEEEEEEEEeccC
Confidence 899999999999765
No 16
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=2.9e-09 Score=100.04 Aligned_cols=87 Identities=18% Similarity=0.388 Sum_probs=76.7
Q ss_pred CCCCCeEEEEEEEEEcCCcEEeccccCCCCeeEecCCCCchhHHHHHHccCCCccEEEEEECCCCCCCCCCCCCCCCCce
Q 025317 148 PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRIIIPPELGPPVGPSTFFSAKQF 227 (254)
Q Consensus 148 ~~~gd~V~v~Y~~~~~dG~v~dst~~~~~p~~~~lG~~~~i~Gl~~aL~~mk~Ge~~~i~iP~~layG~~~~~~ip~~s~ 227 (254)
++.||.|+|+|.|+. ||..|.+. ..+.+.+.+|.+.+||||+++|.||+.|++..|.+.....|+.... +|..
T Consensus 158 a~~gD~v~IDf~g~i-Dg~~fegg--~ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L----aGK~ 230 (441)
T COG0544 158 AENGDRVTIDFEGSV-DGEEFEGG--KAENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL----AGKE 230 (441)
T ss_pred cccCCEEEEEEEEEE-cCeeccCc--cccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHh----CCCc
Confidence 899999999999975 99999887 4578999999999999999999999999999988888888875555 5778
Q ss_pred EEEEEEEEeeecCC
Q 025317 228 EVFDVELLSVQDCQ 241 (254)
Q Consensus 228 Lvf~vel~~i~~~~ 241 (254)
..|+|+|..|+.+.
T Consensus 231 a~F~V~vkeVk~~e 244 (441)
T COG0544 231 ATFKVKVKEVKKRE 244 (441)
T ss_pred eEEEEEEEEEeecC
Confidence 99999999997664
No 17
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=2.6e-06 Score=73.70 Aligned_cols=80 Identities=24% Similarity=0.276 Sum_probs=71.6
Q ss_pred CCceEEEEEeccCCCC--CCCCCeEEEEEEEEEc--CCcEEeccccCCCCeeEecCCCCchhHHHHHHccCCCccEEEEE
Q 025317 132 DSGLIYRDFEVGKGDC--PKDGQQVIFHYIGYNE--SGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRII 207 (254)
Q Consensus 132 ~~Gl~y~i~~~G~G~~--~~~gd~V~v~Y~~~~~--dG~v~dst~~~~~p~~~~lG~~~~i~Gl~~aL~~mk~Ge~~~i~ 207 (254)
-.|+.++++..|+|+- ..+|..|.|||..... .++++|+|..-|+|+.+.+|+..-++-|+..|..|+++|...|+
T Consensus 9 ~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkFkL~VwE~il~tM~v~EvaqF~ 88 (329)
T KOG0545|consen 9 VEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKFKLEVWEIILTTMRVHEVAQFW 88 (329)
T ss_pred chhhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhhcCCCeEEeeccccccHHHHHHHHHHhhhhHHHhh
Confidence 4789999999999974 4799999999999876 46789999999999999999999999999999999999999988
Q ss_pred ECCC
Q 025317 208 IPPE 211 (254)
Q Consensus 208 iP~~ 211 (254)
+.-.
T Consensus 89 ~d~~ 92 (329)
T KOG0545|consen 89 CDTI 92 (329)
T ss_pred hhhh
Confidence 7543
No 18
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.00024 Score=58.72 Aligned_cols=54 Identities=28% Similarity=0.576 Sum_probs=41.5
Q ss_pred ecCCCCchhHHHHHHccCCCccEEEEEECCCCCCCCCCCCCCCCCceEEEEEEEEee
Q 025317 181 RMGTNALVPGFEEGIRDMRPGGKRRIIIPPELGPPVGPSTFFSAKQFEVFDVELLSV 237 (254)
Q Consensus 181 ~lG~~~~i~Gl~~aL~~mk~Ge~~~i~iP~~layG~~~~~~ip~~s~Lvf~vel~~i 237 (254)
.+|.+.+|+|++++|.+|+.|+++.+++||+++||.+... .-..++|.+.++.+
T Consensus 2 ~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~~---~~~~~~~~~~l~~~ 55 (188)
T KOG0549|consen 2 TLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGRG---DLNILVITILLVLL 55 (188)
T ss_pred cccceEEecCHHHHhhhhhccccceeccCCcccccccccc---cccceEEEeeeeeh
Confidence 5677889999999999999999999999999999932221 12235666665554
No 19
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=80.69 E-value=1.5 Score=28.39 Aligned_cols=22 Identities=18% Similarity=0.221 Sum_probs=12.1
Q ss_pred hhhhHHHHHHHHHhhhhhhcccC
Q 025317 58 LKRRVVPFLLFSSGLFPTLSASG 80 (254)
Q Consensus 58 Mrrr~l~~ll~~~~l~~~~~sc~ 80 (254)
|||.+.+. ++++.+.+.+++|-
T Consensus 2 mKk~i~~i-~~~l~~~~~l~~Cn 23 (48)
T PRK10081 2 VKKTIAAI-FSVLVLSTVLTACN 23 (48)
T ss_pred hHHHHHHH-HHHHHHHHHHhhhh
Confidence 55555443 33344455688984
No 20
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=73.28 E-value=3.6 Score=30.65 Aligned_cols=21 Identities=10% Similarity=0.097 Sum_probs=9.2
Q ss_pred hhhhHHHHHHHHHhhhhhhcc
Q 025317 58 LKRRVVPFLLFSSGLFPTLSA 78 (254)
Q Consensus 58 Mrrr~l~~ll~~~~l~~~~~s 78 (254)
|-.|.+++|.++++++|.++|
T Consensus 1 MaSK~~llL~l~LA~lLlisS 21 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISS 21 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444
No 21
>PF01272 GreA_GreB: Transcription elongation factor, GreA/GreB, C-term; InterPro: IPR001437 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 2P4V_E 2ETN_B 3BMB_B 2PN0_D 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A.
Probab=72.21 E-value=16 Score=25.66 Aligned_cols=23 Identities=9% Similarity=0.212 Sum_probs=18.3
Q ss_pred hhHHHHHHccCCCccEEEEEECC
Q 025317 188 VPGFEEGIRDMRPGGKRRIIIPP 210 (254)
Q Consensus 188 i~Gl~~aL~~mk~Ge~~~i~iP~ 210 (254)
...+-.||.|.++||.+.+.+|.
T Consensus 43 ~SPLG~ALlG~~~Gd~v~~~~~~ 65 (77)
T PF01272_consen 43 DSPLGKALLGKKVGDEVEVELPG 65 (77)
T ss_dssp TSHHHHHHTT-BTT-EEEEEETT
T ss_pred cCHHHHHhcCCCCCCEEEEEeCC
Confidence 45688999999999999998875
No 22
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=63.21 E-value=53 Score=26.64 Aligned_cols=36 Identities=19% Similarity=0.195 Sum_probs=27.6
Q ss_pred hhHHHHHHccCCCccEEEEEECCCCCCCCCCCCCCCCCceEEEEEEEEeeecC
Q 025317 188 VPGFEEGIRDMRPGGKRRIIIPPELGPPVGPSTFFSAKQFEVFDVELLSVQDC 240 (254)
Q Consensus 188 i~Gl~~aL~~mk~Ge~~~i~iP~~layG~~~~~~ip~~s~Lvf~vel~~i~~~ 240 (254)
...+-.+|.|-++||.+.+..|.. ...++|++|..+
T Consensus 122 ~SPlG~ALlGk~vGD~v~v~~p~g-----------------~~~~eI~~I~~~ 157 (158)
T PRK05892 122 DSPLGQALAGHQAGDTVTYSTPQG-----------------PAQVELLAVKLP 157 (158)
T ss_pred CCHHHHHHhCCCCCCEEEEEcCCC-----------------cEEEEEEEEEcC
Confidence 346889999999999999887752 156777877654
No 23
>PRK05753 nucleoside diphosphate kinase regulator; Provisional
Probab=58.91 E-value=72 Score=25.18 Aligned_cols=23 Identities=9% Similarity=0.135 Sum_probs=19.7
Q ss_pred hhHHHHHHccCCCccEEEEEECC
Q 025317 188 VPGFEEGIRDMRPGGKRRIIIPP 210 (254)
Q Consensus 188 i~Gl~~aL~~mk~Ge~~~i~iP~ 210 (254)
...+-.||.|.++|+.+.+..|.
T Consensus 92 ~SPlG~ALlG~~~Gd~v~v~~p~ 114 (137)
T PRK05753 92 LAPVGAALLGLSVGQSIDWPLPG 114 (137)
T ss_pred cCHHHHHHcCCCCCCEEEEECCC
Confidence 45688999999999999987664
No 24
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=56.85 E-value=52 Score=26.48 Aligned_cols=23 Identities=9% Similarity=0.174 Sum_probs=19.9
Q ss_pred hhHHHHHHccCCCccEEEEEECC
Q 025317 188 VPGFEEGIRDMRPGGKRRIIIPP 210 (254)
Q Consensus 188 i~Gl~~aL~~mk~Ge~~~i~iP~ 210 (254)
...+-.+|.|.++|+.+.+.+|.
T Consensus 123 ~SPlG~aLlGk~~Gd~v~~~~p~ 145 (157)
T PRK00226 123 ESPIARALIGKKVGDTVEVTTPG 145 (157)
T ss_pred CChHHHHHhCCCCCCEEEEEcCC
Confidence 45688999999999999998875
No 25
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=53.98 E-value=60 Score=26.28 Aligned_cols=23 Identities=9% Similarity=0.127 Sum_probs=19.9
Q ss_pred hhHHHHHHccCCCccEEEEEECC
Q 025317 188 VPGFEEGIRDMRPGGKRRIIIPP 210 (254)
Q Consensus 188 i~Gl~~aL~~mk~Ge~~~i~iP~ 210 (254)
...+-.+|.|.++||.+.+.+|.
T Consensus 120 ~SPlG~ALlGk~~GD~v~v~~p~ 142 (156)
T TIGR01461 120 DSPLARALLKKEVGDEVVVNTPA 142 (156)
T ss_pred CCHHHHHHcCCCCCCEEEEEcCC
Confidence 45688999999999999998775
No 26
>TIGR02122 TRAP_TAXI TRAP transporter solute receptor, TAXI family. This family is one of at least three major families of extracytoplasmic solute receptor (ESR) for TRAP (Tripartite ATP-independent Periplasmic Transporter) transporters. The others are the DctP (TIGR00787) and SmoM (pfam03480) families. These transporters are secondary (driven by an ion gradient) but composed of three polypeptides, although in some species the 4-TM and 12-TM integral membrane proteins are fused. Substrates for this transporter family are not fully characterized but, besides C4 dicarboxylates, may include mannitol and other compounds.
Probab=53.54 E-value=9.2 Score=33.73 Aligned_cols=24 Identities=17% Similarity=0.087 Sum_probs=18.9
Q ss_pred hhhhHHHHHHHHHhhhhhhcccCC
Q 025317 58 LKRRVVPFLLFSSGLFPTLSASGK 81 (254)
Q Consensus 58 Mrrr~l~~ll~~~~l~~~~~sc~~ 81 (254)
||||+.+.+++++.+.+++++|+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (320)
T TIGR02122 1 MKKRLFLLGAALAIVGAALAACAG 24 (320)
T ss_pred CchHHHHHHHHHHHHHHHHHhhcc
Confidence 889998887776666677889985
No 27
>COG5510 Predicted small secreted protein [Function unknown]
Probab=53.51 E-value=12 Score=23.67 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=10.2
Q ss_pred hhhhHHHHHHHHHhhhhhhccc
Q 025317 58 LKRRVVPFLLFSSGLFPTLSAS 79 (254)
Q Consensus 58 Mrrr~l~~ll~~~~l~~~~~sc 79 (254)
|||-+++.++++++ ...+++|
T Consensus 2 mk~t~l~i~~vll~-s~llaaC 22 (44)
T COG5510 2 MKKTILLIALVLLA-STLLAAC 22 (44)
T ss_pred chHHHHHHHHHHHH-HHHHHHh
Confidence 55544443333333 3457888
No 28
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=50.14 E-value=86 Score=25.04 Aligned_cols=23 Identities=9% Similarity=0.144 Sum_probs=20.1
Q ss_pred hhHHHHHHccCCCccEEEEEECC
Q 025317 188 VPGFEEGIRDMRPGGKRRIIIPP 210 (254)
Q Consensus 188 i~Gl~~aL~~mk~Ge~~~i~iP~ 210 (254)
...+-.+|.|.++|+.+.+..|.
T Consensus 118 ~SPlG~ALlG~~~Gd~v~v~~p~ 140 (151)
T TIGR01462 118 DSPLGKALIGKKVGDVVEVQTPK 140 (151)
T ss_pred CCHHHHHHcCCCCCCEEEEEeCC
Confidence 45688999999999999998775
No 29
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=49.43 E-value=20 Score=19.96 Aligned_cols=19 Identities=16% Similarity=0.133 Sum_probs=9.7
Q ss_pred hhhhHHHHHHHHHhhhhhhcccC
Q 025317 58 LKRRVVPFLLFSSGLFPTLSASG 80 (254)
Q Consensus 58 Mrrr~l~~ll~~~~l~~~~~sc~ 80 (254)
|.||++..+++++. +++|.
T Consensus 6 mmKkil~~l~a~~~----LagCs 24 (25)
T PF08139_consen 6 MMKKILFPLLALFM----LAGCS 24 (25)
T ss_pred HHHHHHHHHHHHHH----Hhhcc
Confidence 55555554444332 56664
No 30
>PF05481 Myco_19_kDa: Mycobacterium 19 kDa lipoprotein antigen; InterPro: IPR008691 Most of the antigens of Mycobacterium leprae and Mycobacterium tuberculosis that have been identified are members of stress protein families, which are highly conserved throughout many diverse species. Of the M. leprae and M. tuberculosis antigens identified by monoclonal antibodies, all except the 18 kDa M. leprae antigen and the 19 kDa M. tuberculosis antigen are strongly cross-reactive between these two species and are coded within very similar genes [, ].; GO: 0016020 membrane
Probab=48.60 E-value=6.3 Score=32.25 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=20.5
Q ss_pred hhhhHHHHHHHHHhhhhhhcccCCCC
Q 025317 58 LKRRVVPFLLFSSGLFPTLSASGKTK 83 (254)
Q Consensus 58 Mrrr~l~~ll~~~~l~~~~~sc~~~~ 83 (254)
|||+++..+..++++...+++|....
T Consensus 1 m~~~~~~~v~g~a~~aa~~~GCS~~~ 26 (160)
T PF05481_consen 1 MKRGLVVAVAGAAALAAGLSGCSSGD 26 (160)
T ss_pred CceeEeeehhhHHHHHHhhccccCCC
Confidence 89998888777777777889998743
No 31
>COG5567 Predicted small periplasmic lipoprotein [Cell motility and secretion]
Probab=43.99 E-value=21 Score=23.80 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=13.2
Q ss_pred hhhhHHHHHHHHHhhhhhhcccCCCC
Q 025317 58 LKRRVVPFLLFSSGLFPTLSASGKTK 83 (254)
Q Consensus 58 Mrrr~l~~ll~~~~l~~~~~sc~~~~ 83 (254)
||+ .+..+++++.++ ++++||-..
T Consensus 1 mk~-~~~s~~ala~l~-sLA~CG~KG 24 (58)
T COG5567 1 MKN-VFKSLLALATLF-SLAGCGLKG 24 (58)
T ss_pred Chh-HHHHHHHHHHHH-HHHhcccCC
Confidence 444 333344434333 889999754
No 32
>PRK11653 hypothetical protein; Provisional
Probab=43.95 E-value=20 Score=30.95 Aligned_cols=27 Identities=7% Similarity=0.142 Sum_probs=16.9
Q ss_pred chhhhH----HHHHHHHHhhhhhhcccCCCC
Q 025317 57 KLKRRV----VPFLLFSSGLFPTLSASGKTK 83 (254)
Q Consensus 57 ~Mrrr~----l~~ll~~~~l~~~~~sc~~~~ 83 (254)
.|||++ ++.++++++.+++|++|+..+
T Consensus 11 ~~rK~~rs~~la~vala~~a~f~LagC~~~~ 41 (225)
T PRK11653 11 SFRKNWRSRHLAPVALAVAAVFMLAGCEKSD 41 (225)
T ss_pred HHHhhhccchhHHHHHHHHHHHHHhccCCCc
Confidence 477754 444444455567789998753
No 33
>PRK02998 prsA peptidylprolyl isomerase; Reviewed
Probab=43.91 E-value=17 Score=32.30 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=18.3
Q ss_pred CCCchhHHHHHHccCCCccEEE
Q 025317 184 TNALVPGFEEGIRDMRPGGKRR 205 (254)
Q Consensus 184 ~~~~i~Gl~~aL~~mk~Ge~~~ 205 (254)
.+.+.+.|++++..|++|+...
T Consensus 186 ~~~l~~~~~~a~~~Lk~GevS~ 207 (283)
T PRK02998 186 PGQTVKEFEEAAYKLDAGQVSE 207 (283)
T ss_pred CCcchHHHHHHHHcCCCCCcCC
Confidence 3567889999999999998654
No 34
>PF01346 FKBP_N: Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; InterPro: IPR000774 Peptidyl-prolyl cis-trans isomerase (PPIase) catalyses the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides [, ]. This alpha helical domain is found at the N terminus of proteins belonging to the FKBP-type peptidyl-prolyl cis-trans isomerase(IPR001179 from INTERPRO) family. Peptidyl-prolyl cis-trans isomerase has been shown to accelerate the refolding of several proteins in vitro [, , ]; the FKPB-type enzymes probably act in the folding of extracytoplasmic proteins.; GO: 0006457 protein folding; PDB: 1FD9_A 2VCD_A 3OE2_A 2UZ5_A 3B09_A 1Q6H_B 1Q6I_B 1Q6U_A.
Probab=43.33 E-value=8.1 Score=29.60 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=15.9
Q ss_pred cceeeeeeccCceeCCCceEEEE
Q 025317 117 GFEVKVVTSENYTKRDSGLIYRD 139 (254)
Q Consensus 117 ~~~~~~~~~~~~~~~~~Gl~y~i 139 (254)
.|...+...++++++++||+|+|
T Consensus 102 ~fla~n~k~~GV~~t~SGLqY~V 124 (124)
T PF01346_consen 102 AFLAENAKKEGVKTTESGLQYKV 124 (124)
T ss_dssp HHHHHHHTSTTEEE-TTS-EEEE
T ss_pred HHHHHHcCCCCCEECCCCCeeeC
Confidence 34555566679999999999986
No 35
>PRK10523 lipoprotein involved with copper homeostasis and adhesion; Provisional
Probab=42.31 E-value=86 Score=27.30 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=13.4
Q ss_pred hhhhHHHHHHHHHhhhhhhcccCCCC
Q 025317 58 LKRRVVPFLLFSSGLFPTLSASGKTK 83 (254)
Q Consensus 58 Mrrr~l~~ll~~~~l~~~~~sc~~~~ 83 (254)
||| +++.++++++ ++++.+|....
T Consensus 2 mkk-~~~~~~~a~~-l~~l~gC~~~~ 25 (234)
T PRK10523 2 MKK-AIITALAAAG-LFTLMGCNNRA 25 (234)
T ss_pred chH-HHHHHHHHHH-HHHhhccCCcc
Confidence 455 4454544444 34688887543
No 36
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=41.51 E-value=1e+02 Score=24.89 Aligned_cols=23 Identities=9% Similarity=0.147 Sum_probs=20.0
Q ss_pred hhHHHHHHccCCCccEEEEEECC
Q 025317 188 VPGFEEGIRDMRPGGKRRIIIPP 210 (254)
Q Consensus 188 i~Gl~~aL~~mk~Ge~~~i~iP~ 210 (254)
...+-.+|.|.++|+.+.+.+|.
T Consensus 122 ~SPlG~ALlGk~vGd~v~v~~p~ 144 (157)
T PRK01885 122 DSPMARALLKKEVGDEVTVNTPA 144 (157)
T ss_pred cCHHHHHHhCCCCCCEEEEEcCC
Confidence 45688999999999999998876
No 37
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=40.73 E-value=76 Score=26.55 Aligned_cols=56 Identities=21% Similarity=0.294 Sum_probs=38.4
Q ss_pred CCCCCCeEEEEEEEEEcCCcEEeccccCCCCeeEecCCCCchhH---HH-HHHccCCCccEEEEEECC
Q 025317 147 CPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPG---FE-EGIRDMRPGGKRRIIIPP 210 (254)
Q Consensus 147 ~~~~gd~V~v~Y~~~~~dG~v~dst~~~~~p~~~~lG~~~~i~G---l~-~aL~~mk~Ge~~~i~iP~ 210 (254)
...+|+.+.+.+.+.+.+|+.... ...+.++.+. .| ++ .||.-+.+|++..+--+.
T Consensus 71 ~~~~g~~lrl~V~G~~~~G~~~~k------~v~lpl~~~~--~g~eRL~~~GL~l~~e~~~~~Vd~v~ 130 (183)
T PF11874_consen 71 QLPPGSSLRLRVEGPDFEGDPVTK------TVLLPLGDGA--DGEERLEAAGLTLMEEGGKVIVDEVE 130 (183)
T ss_pred cCCCCCEEEEEEEccCCCCCceEE------EEEEEcCCCC--CHHHHHHhCCCEEEeeCCEEEEEecC
Confidence 467888888888888877776643 3455666544 22 22 267778999998877664
No 38
>PRK09810 entericidin A; Provisional
Probab=39.13 E-value=26 Score=21.90 Aligned_cols=20 Identities=35% Similarity=0.436 Sum_probs=9.7
Q ss_pred hhhhHHHHHHHHHhhhhhhcccCC
Q 025317 58 LKRRVVPFLLFSSGLFPTLSASGK 81 (254)
Q Consensus 58 Mrrr~l~~ll~~~~l~~~~~sc~~ 81 (254)
|||.+++.++++ +.+++|--
T Consensus 2 Mkk~~~l~~~~~----~~L~aCNT 21 (41)
T PRK09810 2 MKRLIVLVLLAS----TLLTGCNT 21 (41)
T ss_pred hHHHHHHHHHHH----HHHhhhhh
Confidence 556554432221 24678853
No 39
>PHA02122 hypothetical protein
Probab=37.88 E-value=56 Score=21.85 Aligned_cols=20 Identities=30% Similarity=0.434 Sum_probs=16.4
Q ss_pred CCCCeEEEEEEEEEcCCcEEe
Q 025317 149 KDGQQVIFHYIGYNESGRRID 169 (254)
Q Consensus 149 ~~gd~V~v~Y~~~~~dG~v~d 169 (254)
..||.|.++|.... +|+.|-
T Consensus 39 ~~gd~v~vn~e~~~-ng~l~i 58 (65)
T PHA02122 39 DDGDEVIVNFELVV-NGKLII 58 (65)
T ss_pred cCCCEEEEEEEEEE-CCEEEE
Confidence 46899999999986 787764
No 40
>PRK06760 hypothetical protein; Provisional
Probab=37.43 E-value=20 Score=30.81 Aligned_cols=31 Identities=23% Similarity=0.313 Sum_probs=21.4
Q ss_pred hhhhHHHHHHHHHhhhhhhcccCCCCCCCcch
Q 025317 58 LKRRVVPFLLFSSGLFPTLSASGKTKSKNPYD 89 (254)
Q Consensus 58 Mrrr~l~~ll~~~~l~~~~~sc~~~~~~~~~~ 89 (254)
|||++-+++++++. +..|++|+......|++
T Consensus 1 MKK~l~i~~~~~i~-~~~fsaCS~~~~~~PaN 31 (223)
T PRK06760 1 MKKTLTIFMLTILL-LISFSACSKKENSFPAN 31 (223)
T ss_pred CceeeehHHHHHHH-HHHHhccCCCcccCCcc
Confidence 77777666655554 56789999876666654
No 41
>PF12262 Lipase_bact_N: Bacterial virulence factor lipase N-terminal
Probab=36.45 E-value=25 Score=31.19 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=15.1
Q ss_pred hhhhHHHHHHHHHhhhhhhcccCCCCC
Q 025317 58 LKRRVVPFLLFSSGLFPTLSASGKTKS 84 (254)
Q Consensus 58 Mrrr~l~~ll~~~~l~~~~~sc~~~~~ 84 (254)
|||.++.++++. .+.|++||++..
T Consensus 1 Mkk~~l~~~l~s---al~L~GCg~~s~ 24 (268)
T PF12262_consen 1 MKKLLLSSALAS---ALGLAGCGGDSE 24 (268)
T ss_pred CchHHHHHHHHH---HHHeeecCCCcc
Confidence 788765554442 245799997553
No 42
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=36.04 E-value=52 Score=22.68 Aligned_cols=14 Identities=29% Similarity=0.487 Sum_probs=9.4
Q ss_pred hhhhHHHHHHHHHh
Q 025317 58 LKRRVVPFLLFSSG 71 (254)
Q Consensus 58 Mrrr~l~~ll~~~~ 71 (254)
|++++++.|+++++
T Consensus 1 ms~~viIaL~~ava 14 (66)
T PF10907_consen 1 MSRRVIIALVVAVA 14 (66)
T ss_pred CCcchhHHHHHHHH
Confidence 67777777666554
No 43
>PF05688 DUF824: Salmonella repeat of unknown function (DUF824); InterPro: IPR008542 This family consists of a series of repeated sequences (of around 180 residues) which are found in Salmonella typhimurium, Salmonella typhi and Escherichia coli. These repeats are almost always found with this entry. The repeats are associated with RatA and RatB, the coding sequences of which are found in the pathogeneicity island of Salmonella. The sequences may be determinants of pathogenicity [, ].
Probab=34.43 E-value=67 Score=20.67 Aligned_cols=35 Identities=14% Similarity=0.256 Sum_probs=27.0
Q ss_pred CCCCCCCeEEEEEEEEEcCCcEEeccccCCCCeeEecCCC
Q 025317 146 DCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTN 185 (254)
Q Consensus 146 ~~~~~gd~V~v~Y~~~~~dG~v~dst~~~~~p~~~~lG~~ 185 (254)
.+++.|+.|.+..+.++.+|..+.. .+|.+..|.+
T Consensus 7 akaK~Ge~I~ltVt~kda~G~pv~n-----~~f~l~r~~~ 41 (47)
T PF05688_consen 7 AKAKVGETIPLTVTVKDANGNPVPN-----APFTLTRGDA 41 (47)
T ss_pred hheecCCeEEEEEEEECCCCCCcCC-----ceEEEEecCc
Confidence 4689999999999999988877653 4677766543
No 44
>PRK01326 prsA foldase protein PrsA; Reviewed
Probab=34.25 E-value=32 Score=30.97 Aligned_cols=22 Identities=5% Similarity=0.108 Sum_probs=18.0
Q ss_pred CCchhHHHHHHccCCCccEEEE
Q 025317 185 NALVPGFEEGIRDMRPGGKRRI 206 (254)
Q Consensus 185 ~~~i~Gl~~aL~~mk~Ge~~~i 206 (254)
+.+.+.|.+++..|++|+-...
T Consensus 197 ~~l~~~~~~a~~~Lk~GevS~p 218 (310)
T PRK01326 197 TNVPEQVKKAAFALDEDGVSDV 218 (310)
T ss_pred CcccHHHHHHHHcCCCCCcCCc
Confidence 4567789999999999997554
No 45
>COG2980 RlpB Rare lipoprotein B [Cell envelope biogenesis, outer membrane]
Probab=34.04 E-value=27 Score=29.00 Aligned_cols=22 Identities=18% Similarity=0.146 Sum_probs=13.7
Q ss_pred hhhhHHHHHHHHHhhhhhhcccCCC
Q 025317 58 LKRRVVPFLLFSSGLFPTLSASGKT 82 (254)
Q Consensus 58 Mrrr~l~~ll~~~~l~~~~~sc~~~ 82 (254)
||+ +..++++++++.+++||-.
T Consensus 1 M~~---L~~~lL~~a~~~L~aCGFh 22 (178)
T COG2980 1 MRK---LKTLLLLAAVLLLAACGFH 22 (178)
T ss_pred Ccc---hHHHHHHHHHHHHhhccee
Confidence 566 3344444556778999863
No 46
>PF13627 LPAM_2: Prokaryotic lipoprotein-attachment site
Probab=32.07 E-value=42 Score=18.45 Aligned_cols=11 Identities=27% Similarity=0.301 Sum_probs=7.4
Q ss_pred hhhhcccCCCC
Q 025317 73 FPTLSASGKTK 83 (254)
Q Consensus 73 ~~~~~sc~~~~ 83 (254)
.+.+++||-..
T Consensus 9 ~~~LsgCG~KG 19 (24)
T PF13627_consen 9 ALALSGCGQKG 19 (24)
T ss_pred HHHHHhcccCC
Confidence 35579998644
No 47
>PRK15396 murein lipoprotein; Provisional
Probab=31.90 E-value=54 Score=23.48 Aligned_cols=25 Identities=12% Similarity=0.107 Sum_probs=12.0
Q ss_pred hhhhHHHHHHHHHhhhhhhcccCCCC
Q 025317 58 LKRRVVPFLLFSSGLFPTLSASGKTK 83 (254)
Q Consensus 58 Mrrr~l~~ll~~~~l~~~~~sc~~~~ 83 (254)
|+|+.++...+.++ ++.|.+|....
T Consensus 1 m~~~kl~l~av~ls-~~LLaGCAs~~ 25 (78)
T PRK15396 1 MNRTKLVLGAVILG-STLLAGCSSNA 25 (78)
T ss_pred CchhHHHHHHHHHH-HHHHHHcCCch
Confidence 56543333333232 23467887653
No 48
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=31.73 E-value=48 Score=24.08 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=11.2
Q ss_pred hhhhHHHHHHHHHhhhhhhccc
Q 025317 58 LKRRVVPFLLFSSGLFPTLSAS 79 (254)
Q Consensus 58 Mrrr~l~~ll~~~~l~~~~~sc 79 (254)
|-||++++-++++.|.+++++.
T Consensus 1 MaRRlwiLslLAVtLtVALAAP 22 (100)
T PF05984_consen 1 MARRLWILSLLAVTLTVALAAP 22 (100)
T ss_pred CchhhHHHHHHHHHHHHHhhcc
Confidence 4455554444444455556655
No 49
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=31.05 E-value=57 Score=23.78 Aligned_cols=24 Identities=13% Similarity=-0.047 Sum_probs=14.4
Q ss_pred hhhhHHHHHHHHHhhhhhhcccCCCC
Q 025317 58 LKRRVVPFLLFSSGLFPTLSASGKTK 83 (254)
Q Consensus 58 Mrrr~l~~ll~~~~l~~~~~sc~~~~ 83 (254)
||+++++..+.+.. +.|.+|....
T Consensus 1 mk~klll~aviLs~--~LLaGCAs~~ 24 (85)
T PRK09973 1 MKTIFTVGAVVLAT--CLLSGCVNEQ 24 (85)
T ss_pred CchhHHHHHHHHHH--HHHHHcCCch
Confidence 77777666444433 3467777653
No 50
>PRK10540 lipoprotein; Provisional
Probab=30.15 E-value=51 Score=23.21 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=11.5
Q ss_pred hhhhHHHHHHHHHhhhhhhcccC
Q 025317 58 LKRRVVPFLLFSSGLFPTLSASG 80 (254)
Q Consensus 58 Mrrr~l~~ll~~~~l~~~~~sc~ 80 (254)
|+||++..+++ +.+.+.+++|.
T Consensus 4 ~~kr~~~~~~~-~~~a~~L~gC~ 25 (72)
T PRK10540 4 TSKKMAAAVLA-ITLAMSLSACS 25 (72)
T ss_pred HHHHHHHHHHH-HHHHHHHhccC
Confidence 44555444333 33344678895
No 51
>PF14466 DUF4425: Domain of unknown function (DUF4425) ; PDB: 2LGE_A 2LG7_A 3U6G_B 2LRG_A.
Probab=28.90 E-value=41 Score=26.08 Aligned_cols=11 Identities=18% Similarity=0.009 Sum_probs=0.0
Q ss_pred hhhhcccCCCC
Q 025317 73 FPTLSASGKTK 83 (254)
Q Consensus 73 ~~~~~sc~~~~ 83 (254)
.+.|.+|++++
T Consensus 8 ~l~~vsC~~dd 18 (121)
T PF14466_consen 8 GLILVSCSKDD 18 (121)
T ss_dssp -----------
T ss_pred HhhEEeecccc
Confidence 45689998754
No 52
>COG0782 Uncharacterized conserved protein, YhbC family [Function unknown]
Probab=28.04 E-value=3.2e+02 Score=21.91 Aligned_cols=22 Identities=9% Similarity=0.164 Sum_probs=19.1
Q ss_pred hhHHHHHHccCCCccEEEEEEC
Q 025317 188 VPGFEEGIRDMRPGGKRRIIIP 209 (254)
Q Consensus 188 i~Gl~~aL~~mk~Ge~~~i~iP 209 (254)
...+-.+|.|.++|+.+.+..|
T Consensus 116 ~SPig~aLlGk~vGd~v~v~~p 137 (151)
T COG0782 116 DSPLGRALLGKKVGDTVEVNTP 137 (151)
T ss_pred cCHHHHHHhCCCCCCEEEEecC
Confidence 4468899999999999999777
No 53
>PRK13792 lysozyme inhibitor; Provisional
Probab=27.86 E-value=50 Score=25.93 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=12.3
Q ss_pred hhhhHHHHHHHHHhhhhhhcccCCCC
Q 025317 58 LKRRVVPFLLFSSGLFPTLSASGKTK 83 (254)
Q Consensus 58 Mrrr~l~~ll~~~~l~~~~~sc~~~~ 83 (254)
||+. ++.+++.++ +.|++|+...
T Consensus 1 mk~~-l~~ll~~~~--~lLsaCs~~~ 23 (127)
T PRK13792 1 MKKA-LWLLLAAVP--VVLVACGGSD 23 (127)
T ss_pred ChhH-HHHHHHHHH--hheecccCCC
Confidence 6655 333333333 3478888643
No 54
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=27.71 E-value=3.1e+02 Score=21.73 Aligned_cols=63 Identities=14% Similarity=0.164 Sum_probs=40.0
Q ss_pred CCceEEEEEeccCCC------CCCCCCeEEEEEEEEEcCCcEEeccccCCCCeeEecCCCCchhHHHHHHccCCCccEEE
Q 025317 132 DSGLIYRDFEVGKGD------CPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRR 205 (254)
Q Consensus 132 ~~Gl~y~i~~~G~G~------~~~~gd~V~v~Y~~~~~dG~v~dst~~~~~p~~~~lG~~~~i~Gl~~aL~~mk~Ge~~~ 205 (254)
-.|+.++.++.|++. .++.||.|+++++ +.|+. +..|.+..- |+ -..+..|++.+
T Consensus 43 ~~~~~~~~i~a~n~~~~P~~I~VkaGD~Vtl~vt--N~d~~----------~H~f~i~~~----gi---s~~I~pGet~T 103 (135)
T TIGR03096 43 VEGVTVKNIRAFNVLNEPEALVVKKGTPVKVTVE--NKSPI----------SEGFSIDAY----GI---SEVIKAGETKT 103 (135)
T ss_pred eCCEEEEEEEeeeeEEcCCEEEECCCCEEEEEEE--eCCCC----------ccceEECCC----Cc---ceEECCCCeEE
Confidence 467888888888772 4799999999885 33321 222333211 11 23467799998
Q ss_pred EEECCCCC
Q 025317 206 IIIPPELG 213 (254)
Q Consensus 206 i~iP~~la 213 (254)
+.+++...
T Consensus 104 itF~adKp 111 (135)
T TIGR03096 104 ISFKADKA 111 (135)
T ss_pred EEEECCCC
Confidence 88877654
No 55
>COG4939 Major membrane immunogen, membrane-anchored lipoprotein [Function unknown]
Probab=27.31 E-value=2e+02 Score=22.72 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=15.7
Q ss_pred CCCCCCeEEEEEEEEEcCCcE
Q 025317 147 CPKDGQQVIFHYIGYNESGRR 167 (254)
Q Consensus 147 ~~~~gd~V~v~Y~~~~~dG~v 167 (254)
+++.|..|.+.|.-++.+|+.
T Consensus 53 ti~dGKiv~~~ydy~~k~G~~ 73 (147)
T COG4939 53 TIQDGKIVACTYDYRDKKGNI 73 (147)
T ss_pred EEeCCEEEEEEeeeecCCCCc
Confidence 367888888888888776653
No 56
>COG5633 Predicted periplasmic lipoprotein [General function prediction only]
Probab=26.47 E-value=1.2e+02 Score=23.58 Aligned_cols=16 Identities=31% Similarity=0.304 Sum_probs=11.8
Q ss_pred CCCCeEEEEEEEEEcC
Q 025317 149 KDGQQVIFHYIGYNES 164 (254)
Q Consensus 149 ~~gd~V~v~Y~~~~~d 164 (254)
+...-|+|||..+.-|
T Consensus 65 ~~q~pv~v~YrfYWYD 80 (123)
T COG5633 65 KRQEPVTVHYRFYWYD 80 (123)
T ss_pred cccCceEEEEEEEEEc
Confidence 3456789999998654
No 57
>COG2834 LolA Outer membrane lipoprotein-sorting protein [Cell envelope biogenesis, outer membrane]
Probab=26.09 E-value=1.8e+02 Score=24.46 Aligned_cols=14 Identities=7% Similarity=0.256 Sum_probs=7.3
Q ss_pred EEEEEEEEeeecCC
Q 025317 228 EVFDVELLSVQDCQ 241 (254)
Q Consensus 228 Lvf~vel~~i~~~~ 241 (254)
...+|++.+++...
T Consensus 177 ~~~~i~~~~~~~n~ 190 (211)
T COG2834 177 QTVTITFSNVKNNP 190 (211)
T ss_pred cEEEEEEEcceecC
Confidence 44555555555443
No 58
>PF07076 DUF1344: Protein of unknown function (DUF1344); InterPro: IPR009780 This family consists of several short, hypothetical bacterial proteins of around 80 residues in length. Members of this family are found in Rhizobium, Agrobacterium and Brucella species. The function of this family is unknown.
Probab=25.30 E-value=1.8e+02 Score=19.79 Aligned_cols=39 Identities=28% Similarity=0.292 Sum_probs=26.9
Q ss_pred ceeCCCceEEEEEeccCCCCCCCCCeEEEEEEEEEcCCcEE
Q 025317 128 YTKRDSGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRI 168 (254)
Q Consensus 128 ~~~~~~Gl~y~i~~~G~G~~~~~gd~V~v~Y~~~~~dG~v~ 168 (254)
.++.++|=.|+.-.+=+=+.++.|..|.|+|... +|+.+
T Consensus 18 titLdDGksy~lp~ef~~~~L~~G~kV~V~yd~~--~gk~v 56 (61)
T PF07076_consen 18 TITLDDGKSYKLPEEFDFDGLKPGMKVVVFYDEV--DGKRV 56 (61)
T ss_pred EEEecCCCEEECCCcccccccCCCCEEEEEEEcc--CCcEE
Confidence 3556778777754333345789999999999776 45443
No 59
>PRK11548 outer membrane biogenesis protein BamE; Provisional
Probab=24.52 E-value=59 Score=24.70 Aligned_cols=22 Identities=0% Similarity=-0.043 Sum_probs=11.1
Q ss_pred hhhhHHHHHHHHHhhhhhhcccCC
Q 025317 58 LKRRVVPFLLFSSGLFPTLSASGK 81 (254)
Q Consensus 58 Mrrr~l~~ll~~~~l~~~~~sc~~ 81 (254)
||++.+..+++++ ++++++|+.
T Consensus 1 m~~~~~~~~~~~~--~~~LsgCs~ 22 (113)
T PRK11548 1 MRCKTLTAAAAVL--LMLTAGCST 22 (113)
T ss_pred CcchHHHHHHHHH--HHHHcccCC
Confidence 4554443333322 245789974
No 60
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=22.83 E-value=2.2e+02 Score=22.80 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=12.8
Q ss_pred hhHHHHHHHHHhhhhhhcccCCCCCC
Q 025317 60 RRVVPFLLFSSGLFPTLSASGKTKSK 85 (254)
Q Consensus 60 rr~l~~ll~~~~l~~~~~sc~~~~~~ 85 (254)
||++..+++++..+ +.+||+....
T Consensus 2 r~~~s~~Lv~~~~~--Lvsc~~p~~~ 25 (142)
T TIGR03042 2 RSLASLLLVLLLTF--LVSCSGPAAA 25 (142)
T ss_pred hhHHHHHHHHHHHH--HHHcCCCccc
Confidence 34444444443333 7888876543
No 61
>PRK15324 type III secretion system lipoprotein PrgK; Provisional
Probab=21.66 E-value=1.4e+02 Score=26.27 Aligned_cols=24 Identities=17% Similarity=0.100 Sum_probs=14.2
Q ss_pred hhcccCCCCCCCcchHHHHHHHHH
Q 025317 75 TLSASGKTKSKNPYDEKRLLEQNK 98 (254)
Q Consensus 75 ~~~sc~~~~~~~~~~~~~~~~~~~ 98 (254)
.+++|....-....++.+..+-..
T Consensus 14 lLs~c~~~~Lys~L~~~dAneIv~ 37 (252)
T PRK15324 14 TLAGCKDKDLLKGLDQEQANEVIA 37 (252)
T ss_pred HHcCCCeehhhcCCCHHHHHHHHH
Confidence 479998766555555555444333
No 62
>PF09122 DUF1930: Domain of unknown function (DUF1930); InterPro: IPR015206 This entry represents a domain found in 3-mercaptopyruvate sulphurtransferase which has no known function. This domain adopts a structure consisting of a four-stranded antiparallel beta-sheet and an alpha-helix, arranged in a beta(2)-alpha-beta(2) fashion, and bearing a remarkable structural similarity to the FK506-binding protein class of peptidylprolyl cis/trans-isomerase []. ; PDB: 1OKG_A.
Probab=21.33 E-value=1.4e+02 Score=20.55 Aligned_cols=23 Identities=9% Similarity=0.319 Sum_probs=18.1
Q ss_pred hHHHHHHccCCCccEEEEEECCC
Q 025317 189 PGFEEGIRDMRPGGKRRIIIPPE 211 (254)
Q Consensus 189 ~Gl~~aL~~mk~Ge~~~i~iP~~ 211 (254)
+.+..|+..|..||++.++..+.
T Consensus 35 ~El~sA~~HlH~GEkA~V~FkS~ 57 (68)
T PF09122_consen 35 AELKSALVHLHIGEKAQVFFKSQ 57 (68)
T ss_dssp HHHHHHHTT-BTT-EEEEEETTS
T ss_pred HHHHHHHHHhhcCceeEEEEecC
Confidence 46889999999999999998763
No 63
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=20.69 E-value=3.2e+02 Score=19.30 Aligned_cols=59 Identities=19% Similarity=0.241 Sum_probs=35.2
Q ss_pred CCCCCCeEEEEEEEEEcCCcEEecccc------CCCCeeEecCCCCchhH-HHHHHccCCCccEEEEEECC
Q 025317 147 CPKDGQQVIFHYIGYNESGRRIDSTYL------QGSPARIRMGTNALVPG-FEEGIRDMRPGGKRRIIIPP 210 (254)
Q Consensus 147 ~~~~gd~V~v~Y~~~~~dG~v~dst~~------~~~p~~~~lG~~~~i~G-l~~aL~~mk~Ge~~~i~iP~ 210 (254)
....|+.|.++.. .+|..+.-.|. ....+.|.+- ....| +-..|..|++|+++.+.-|.
T Consensus 29 ~~~pGQ~v~v~~~---~~~~~~~R~yS~~s~~~~~~~~~~~ik--~~~~G~~S~~L~~l~~Gd~v~i~gP~ 94 (99)
T PF00970_consen 29 DFKPGQFVSVRVP---INGKQVSRPYSPASSPDDKGYLEFAIK--RYPNGRVSRYLHQLKPGDEVEIRGPY 94 (99)
T ss_dssp SSTTT-EEEEEEE---ETTEEEEEEEEBCSSTTSSSEEEEEEE--ECTTSHHHHHHHTSCTTSEEEEEEEE
T ss_pred ccCcceEEEEEEc---cCCcceecceeEeeecCCCCcEEEEEE--eccCCHHHHHHHhCCCCCEEEEEEcc
Confidence 4688999999987 34543332221 1223555442 22223 55677889999999997764
No 64
>PF11254 DUF3053: Protein of unknown function (DUF3053); InterPro: IPR021413 Some members in this family of proteins are annotated as the membrane protein YiaF. No function is currently known.
Probab=20.19 E-value=1e+02 Score=26.73 Aligned_cols=22 Identities=23% Similarity=0.175 Sum_probs=13.5
Q ss_pred hHHHHHHHHHhhhhhhcccCCCC
Q 025317 61 RVVPFLLFSSGLFPTLSASGKTK 83 (254)
Q Consensus 61 r~l~~ll~~~~l~~~~~sc~~~~ 83 (254)
||+..++++ ++++.|++||..+
T Consensus 2 r~~~p~~al-~~~l~LagCgdKE 23 (229)
T PF11254_consen 2 RWFRPLLAL-LMVLQLAGCGDKE 23 (229)
T ss_pred chHHHHHHH-HHHHHHHhcCCCC
Confidence 455554443 3456789998766
No 65
>COG4808 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.08 E-value=73 Score=25.39 Aligned_cols=16 Identities=25% Similarity=0.339 Sum_probs=10.7
Q ss_pred HHHHHhhhhhhcccCC
Q 025317 66 LLFSSGLFPTLSASGK 81 (254)
Q Consensus 66 ll~~~~l~~~~~sc~~ 81 (254)
+++++.+.+.+++||.
T Consensus 10 ~~~alil~~sl~gCgd 25 (152)
T COG4808 10 LVVALVLVFSLAGCGD 25 (152)
T ss_pred HHHHHHHHHHhhhcCc
Confidence 4444445677899996
Done!