Query 025318
Match_columns 254
No_of_seqs 189 out of 1264
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 04:38:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025318.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025318hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03014 carbonic anhydrase 100.0 6.2E-80 1.3E-84 576.8 19.3 240 1-241 1-255 (347)
2 PLN03019 carbonic anhydrase 100.0 1.4E-53 3E-58 397.5 15.8 179 63-241 70-250 (330)
3 PLN00416 carbonate dehydratase 100.0 7.1E-48 1.5E-52 350.0 15.4 175 66-241 1-176 (258)
4 PLN03006 carbonate dehydratase 100.0 1E-44 2.2E-49 335.1 12.4 156 84-241 49-206 (301)
5 KOG1578 Predicted carbonic anh 100.0 4.3E-39 9.3E-44 292.9 6.7 188 43-242 2-189 (276)
6 COG0288 CynT Carbonic anhydras 100.0 1.8E-37 3.9E-42 273.8 11.8 121 113-240 2-123 (207)
7 cd00883 beta_CA_cladeA Carboni 100.0 7.5E-37 1.6E-41 263.9 9.8 110 122-240 1-110 (182)
8 cd00884 beta_CA_cladeB Carboni 100.0 8.4E-37 1.8E-41 266.1 9.8 120 121-241 1-121 (190)
9 PLN02154 carbonic anhydrase 100.0 1.7E-36 3.8E-41 279.1 12.4 132 110-242 71-202 (290)
10 PRK10437 carbonic anhydrase; P 100.0 1.8E-36 4E-41 269.9 11.9 119 114-241 3-121 (220)
11 PRK15219 carbonic anhydrase; P 100.0 2.4E-36 5.2E-41 272.8 11.7 121 108-241 50-173 (245)
12 cd03378 beta_CA_cladeC Carboni 100.0 7.7E-34 1.7E-38 240.9 11.7 105 111-222 1-108 (154)
13 cd00382 beta_CA Carbonic anhyd 100.0 9.1E-29 2E-33 200.7 8.6 76 144-223 1-76 (119)
14 PF00484 Pro_CA: Carbonic anhy 100.0 9.5E-29 2.1E-33 204.7 6.9 86 148-241 1-86 (153)
15 cd03379 beta_CA_cladeD Carboni 99.9 7E-27 1.5E-31 194.4 6.5 75 144-225 1-75 (142)
16 KOG1578 Predicted carbonic anh 98.2 3E-08 6.6E-13 91.5 -6.1 120 118-240 3-148 (276)
17 TIGR02742 TrbC_Ftype type-F co 62.1 27 0.00059 29.2 6.1 56 130-204 57-112 (130)
18 PF12778 PXPV: PXPV repeat (3 52.8 7.4 0.00016 23.6 0.9 18 41-58 4-21 (22)
19 PRK13730 conjugal transfer pil 42.4 59 0.0013 29.8 5.4 23 131-154 149-171 (212)
20 PF04019 DUF359: Protein of un 40.8 1.5E+02 0.0032 24.6 7.1 80 140-227 6-85 (121)
21 TIGR01250 pro_imino_pep_2 prol 35.9 46 0.001 27.7 3.5 33 192-224 82-114 (288)
22 PF07859 Abhydrolase_3: alpha/ 35.1 36 0.00078 28.4 2.7 34 191-224 51-89 (211)
23 PRK11440 putative hydrolase; P 34.9 75 0.0016 26.9 4.7 48 164-221 90-137 (188)
24 PRK03592 haloalkane dehalogena 32.3 49 0.0011 29.2 3.3 33 192-224 79-111 (295)
25 KOG0025 Zn2+-binding dehydroge 32.0 64 0.0014 31.4 4.1 43 161-215 153-196 (354)
26 PF12697 Abhydrolase_6: Alpha/ 31.6 57 0.0012 25.7 3.3 32 192-223 52-83 (228)
27 PF00561 Abhydrolase_1: alpha/ 30.5 56 0.0012 26.5 3.1 33 190-222 28-60 (230)
28 PLN02824 hydrolase, alpha/beta 29.0 61 0.0013 28.5 3.3 32 193-224 89-120 (294)
29 PF00857 Isochorismatase: Isoc 28.6 1.7E+02 0.0037 23.8 5.7 46 168-223 85-130 (174)
30 PRK14066 exodeoxyribonuclease 27.9 1.1E+02 0.0024 23.3 4.1 18 66-83 1-18 (75)
31 COG1116 TauB ABC-type nitrate/ 27.5 34 0.00074 31.9 1.4 17 204-220 28-44 (248)
32 PF01368 DHH: DHH family; Int 26.0 56 0.0012 25.7 2.3 21 204-224 4-26 (145)
33 PF13580 SIS_2: SIS domain; PD 25.7 1.3E+02 0.0028 24.4 4.5 39 164-212 99-138 (138)
34 PRK10803 tol-pal system protei 24.5 1E+02 0.0022 28.4 4.0 70 50-125 23-94 (263)
35 TIGR03100 hydr1_PEP hydrolase, 24.2 89 0.0019 27.9 3.5 31 192-223 85-116 (274)
36 cd01015 CSHase N-carbamoylsarc 22.7 1.7E+02 0.0037 24.5 4.8 52 165-226 84-136 (179)
37 KOG4234 TPR repeat-containing 22.0 71 0.0015 29.8 2.4 18 69-86 182-199 (271)
38 PF01764 Lipase_3: Lipase (cla 21.8 1.3E+02 0.0027 23.5 3.6 33 192-224 50-82 (140)
39 cd01878 HflX HflX subfamily. 21.4 57 0.0012 27.3 1.6 18 204-221 40-57 (204)
40 KOG2781 U3 small nucleolar rib 20.9 1.7E+02 0.0038 27.7 4.7 65 140-213 77-141 (290)
41 TIGR02427 protocat_pcaD 3-oxoa 20.4 1.4E+02 0.0031 24.0 3.7 31 191-221 64-94 (251)
42 PRK09778 putative antitoxin of 20.3 1.3E+02 0.0028 24.4 3.3 32 12-52 6-39 (97)
No 1
>PLN03014 carbonic anhydrase
Probab=100.00 E-value=6.2e-80 Score=576.76 Aligned_cols=240 Identities=74% Similarity=1.098 Sum_probs=223.5
Q ss_pred CCcccccceeecccccccccccccCCCCc-eEEEeec------------CCCCCCCcccCCccccCCCCccCcchhHHhh
Q 025318 1 MSTASINNWCLTSVSQAQSSLIKSSTLRP-SIVARLN------------SPASPPSLIRNEPVFAAPAPIINPNWREDMA 67 (254)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (254)
|||++|||||+||++++++++++ .++|| ++||+|+ ++++||+||||+||||||+|||||+|+|||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~ 79 (347)
T PLN03014 1 MSTAPLSGFFLTSLSPSQSSLQK-LSLRTSSTVACLPPASSSSSSSSSSSSRSVPTLIRNEPVFAAPAPIIAPYWSEEMG 79 (347)
T ss_pred CccccccceeccccCcccccccc-cccCCcceEEEeccccccccccCCCCCCCCchhhcCCccccCCCcccCchhHhhhc
Confidence 99999999999999999999977 78899 8999996 1133899999999999999999999999999
Q ss_pred hhcHHHHHHHHHHHhhhhcCcchhHhHhhHHHHHhhcCCC--CCChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCC
Q 025318 68 NQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPS--DTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQS 145 (254)
Q Consensus 68 ~~s~~~a~~~l~~~l~~~~~l~~~aa~~v~~~~~el~~~~--~~~p~~~l~~Ll~GN~~F~~~~~~~~p~~~~~La~gQ~ 145 (254)
++||||||++|+|||+||++|+++|++||+++|+||++.. ...++|++++|++||++|+++.+..++++|.+|++||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lerL~~GN~rF~~~~~~~~~~~~~~La~GQ~ 159 (347)
T PLN03014 80 TEAYDEAIEALKKLLIEKEELKTVAAAKVEQITAALQTGTSSDKKAFDPVETIKQGFIKFKKEKYETNPALYGELAKGQS 159 (347)
T ss_pred hhhHHHHHHHHHhhcccccccchHHHHhHHHHHHHHhcccCCCCCCcCHHHHHHHHHHHHHhhccccCHHHHHhhccCCC
Confidence 9999999999999999999999999999999999998632 35689999999999999999999999999999999999
Q ss_pred CceEEEeecCCCCChhhhcCCCCCceEEEEeccccCCCCCCcccchhHHHHHHHHHhcCcceEEEeccCCchHHHHhhhc
Q 025318 146 PKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSF 225 (254)
Q Consensus 146 Pk~lVItCsDSRV~Pe~ilg~~pGEaFViRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~V~~IVViGHTdCGai~Aal~~ 225 (254)
|+++||+|+||||+|+.|||++|||+||+||+||+|+++|...+.+++++|||||.+|+|++|||||||+||||+|+++.
T Consensus 160 P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~~~d~~~~~~v~asLEYAV~~L~V~~IVV~GHs~CGaV~Aa~~~ 239 (347)
T PLN03014 160 PKYMVFACSDSRVCPSHVLDFQPGDAFVVRNIANMVPPFDKVKYGGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMSF 239 (347)
T ss_pred CCEEEEEeccCCCCHHHHhCCCCCcEEEEeccccccCcccccccccchhHHHHHHHHhCCCEEEEeCCCCchHHHHHHhc
Confidence 99999999999999999999999999999999999999886556678999999999999999999999999999999987
Q ss_pred ccCCCCCCCcccccee
Q 025318 226 TFDGNNSTYGLICKLI 241 (254)
Q Consensus 226 ~~~g~~~t~fi~~w~~ 241 (254)
..+|....++|++|+.
T Consensus 240 ~~~g~~~~~~I~~wl~ 255 (347)
T PLN03014 240 PLDGNNSTDFIEDWVK 255 (347)
T ss_pred cccccccchhHHHHHH
Confidence 7666667789999995
No 2
>PLN03019 carbonic anhydrase
Probab=100.00 E-value=1.4e-53 Score=397.49 Aligned_cols=179 Identities=77% Similarity=1.174 Sum_probs=166.5
Q ss_pred hHHhhhhcHHHHHHHHHHHhhhhcCcchhHhHhhHHHHHhhcCCC--CCChHHHHHHHHHHHHHHHhhhccCChhhHHhh
Q 025318 63 REDMANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPS--DTKAFDSVERIKEGFIHFKREKYEKNPALYSEL 140 (254)
Q Consensus 63 ~~~~~~~s~~~a~~~l~~~l~~~~~l~~~aa~~v~~~~~el~~~~--~~~p~~~l~~Ll~GN~~F~~~~~~~~p~~~~~L 140 (254)
.++|+++|||+||++|+|||+||++|+++|++||+++|+||++.. ..++++++++|++||++|+.+.+.+++++|.+|
T Consensus 70 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ale~Ll~GN~rF~~~~~~~~p~~~~~L 149 (330)
T PLN03019 70 LRRMGNESYEDAIEALKKLLIEKDDLKDVAAAKVKKITAELQAASSSDSKSFDPVERIKEGFVTFKKEKYETNPALYGEL 149 (330)
T ss_pred hHHHhhhhHHHHHHHHHhhcccccccchHHHHHHHHhhHHhhhccCCCCchhHHHHHHHHHHHHHHhccccccHHHHHhh
Confidence 346889999999999999999999999999999999999998633 356899999999999999999998999999999
Q ss_pred hcCCCCceEEEeecCCCCChhhhcCCCCCceEEEEeccccCCCCCCcccchhHHHHHHHHHhcCcceEEEeccCCchHHH
Q 025318 141 AKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIK 220 (254)
Q Consensus 141 a~gQ~Pk~lVItCsDSRV~Pe~ilg~~pGEaFViRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~V~~IVViGHTdCGai~ 220 (254)
+++|+|+++||+||||||+|+.|||++|||+||+||+||+|+++|...+++++++|||||.+|||++|||||||+||||+
T Consensus 150 a~gQ~P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~p~d~~~~~~v~aSIEYAV~~L~V~~IVV~GHs~CGaVk 229 (330)
T PLN03019 150 AKGQSPKYMVFACSDSRVCPSHVLDFHPGDAFVVRNIANMVPPFDKVKYAGVGAAIEYAVLHLKVENIVVIGHSACGGIK 229 (330)
T ss_pred ccCCCCCEEEEEecccCCCHHHHhCCCCCceEEEeccccccCCcccccccccchhHHHHHHHhCCCEEEEecCCCchHHH
Confidence 99999999999999999999999999999999999999999998876667899999999999999999999999999999
Q ss_pred HhhhcccCCCCCCCcccccee
Q 025318 221 GLMSFTFDGNNSTYGLICKLI 241 (254)
Q Consensus 221 Aal~~~~~g~~~t~fi~~w~~ 241 (254)
|+++...+|....++|++|+.
T Consensus 230 Aal~~~~~g~~~~~~I~~wL~ 250 (330)
T PLN03019 230 GLMSFPLDGNNSTDFIEDWVK 250 (330)
T ss_pred HHHhccccCCccchHHHHHHH
Confidence 999877666667789999995
No 3
>PLN00416 carbonate dehydratase
Probab=100.00 E-value=7.1e-48 Score=349.96 Aligned_cols=175 Identities=60% Similarity=0.951 Sum_probs=159.9
Q ss_pred hhhhcHHHHHHHHHHHhhhhcCcchhHhHhhHHHHHhhcCCCCCChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCC
Q 025318 66 MANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQS 145 (254)
Q Consensus 66 ~~~~s~~~a~~~l~~~l~~~~~l~~~aa~~v~~~~~el~~~~~~~p~~~l~~Ll~GN~~F~~~~~~~~p~~~~~La~gQ~ 145 (254)
|+.+||+++|.+|.+||+.++.+++.+++++..++++|++.. .+|.+.+++|++||++|+++++..++++|..|+.+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~al~~Ll~Gn~rF~~~~~~~~~~~~~~la~gQ~ 79 (258)
T PLN00416 1 MATESYEAAIKGLNDLLSTKADLGNVAAAKIKALTAELKELD-SSNSDAIERIKTGFTQFKTEKYLKNSTLFNHLAKTQT 79 (258)
T ss_pred CCcccHHHHHHHHHhhcccccccchHHHHhHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHhcccccCHHHHHhhccCCC
Confidence 788999999999999999999999999999999999999874 6799999999999999999998888999999999999
Q ss_pred CceEEEeecCCCCChhhhcCCCCCceEEEEeccccCCCCCCcccchhHHHHHHHHHhcCcceEEEeccCCchHHHHhhhc
Q 025318 146 PKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSF 225 (254)
Q Consensus 146 Pk~lVItCsDSRV~Pe~ilg~~pGEaFViRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~V~~IVViGHTdCGai~Aal~~ 225 (254)
|+++||+||||||+|+.|||.+|||+||+||+||+|+++|...++++.++||||+.+|||++|||||||+||||+|++..
T Consensus 80 P~alvI~CsDSRV~pe~If~~~pGDlFVvRNaGNiV~~~d~~~~~~~~asLEyAv~~L~V~~IVV~GHs~CGaV~Aa~~~ 159 (258)
T PLN00416 80 PKFLVFACSDSRVCPSHILNFQPGEAFVVRNIANMVPPFDQKRHSGVGAAVEYAVVHLKVENILVIGHSCCGGIKGLMSI 159 (258)
T ss_pred CCEEEEEecCCCCCHHHHcCCCCCCEEEEeccccccCCccccccccchhHHHHHHHHhCCCEEEEecCCCchHHHHHHhc
Confidence 99999999999999999999999999999999999999876445678899999999999999999999999999999975
Q ss_pred ccCC-CCCCCcccccee
Q 025318 226 TFDG-NNSTYGLICKLI 241 (254)
Q Consensus 226 ~~~g-~~~t~fi~~w~~ 241 (254)
.+.. ....+++..|+.
T Consensus 160 ~~~~~~~~~~~l~~wl~ 176 (258)
T PLN00416 160 EDDAAPTQSDFIENWVK 176 (258)
T ss_pred cccccccccchHHHHHH
Confidence 3221 223468999995
No 4
>PLN03006 carbonate dehydratase
Probab=100.00 E-value=1e-44 Score=335.06 Aligned_cols=156 Identities=42% Similarity=0.727 Sum_probs=142.6
Q ss_pred hhcCcchhHhHhhHHHHHhhcCCC--CCChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCCCceEEEeecCCCCChh
Q 025318 84 EKEDLKPVAAAKVEQITAQLQTPS--DTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPS 161 (254)
Q Consensus 84 ~~~~l~~~aa~~v~~~~~el~~~~--~~~p~~~l~~Ll~GN~~F~~~~~~~~p~~~~~La~gQ~Pk~lVItCsDSRV~Pe 161 (254)
+..+|..+|++|++++|+||++.. ...+++++++|++||.+|+..++..++++|.+|++||+|+++||+||||||+|+
T Consensus 49 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~rf~~f~~~~~~~~~~~~~~La~GQ~P~~lvI~CsDSRV~Pe 128 (301)
T PLN03006 49 KATNLQVMASGKTPGLTQEANGVAIDRQNNTDVFDDMKQRFLAFKKLKYMDDFEHYKNLADAQAPKFLVIACADSRVCPS 128 (301)
T ss_pred cccchhhhhhhchHHHHHHHhhccCCCCCcccHHHHHHHHHHhchhhccccCHHHHHHhccCCCCCEEEEEeccCCCCHH
Confidence 456888999999999999998654 345899999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCceEEEEeccccCCCCCCcccchhHHHHHHHHHhcCcceEEEeccCCchHHHHhhhcccCCCCCCCcccccee
Q 025318 162 HVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTYGLICKLI 241 (254)
Q Consensus 162 ~ilg~~pGEaFViRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~V~~IVViGHTdCGai~Aal~~~~~g~~~t~fi~~w~~ 241 (254)
.|||++|||+||+||+||+|+++|... .++.++|||||.+|+|++|||||||+||||+|++...+++. .++||++|+.
T Consensus 129 ~Ifd~~pGDlFVVRNaGNiVpp~d~~~-~~~~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aal~~~~~g~-~~~~I~~wv~ 206 (301)
T PLN03006 129 AVLGFQPGDAFTVRNIANLVPPYESGP-TETKAALEFSVNTLNVENILVIGHSRCGGIQALMKMEDEGD-SRSFIHNWVV 206 (301)
T ss_pred HHhCCCCCCEEEEeccccccCCccccc-cchhhhHHHHHHHhCCCEEEEecCCCchHHHHHhhccccCC-chhHHHHHHH
Confidence 999999999999999999999987543 57899999999999999999999999999999998776664 6789999994
No 5
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.3e-39 Score=292.92 Aligned_cols=188 Identities=43% Similarity=0.645 Sum_probs=178.7
Q ss_pred CcccCCccccCCCCccCcchhHHhhhhcHHHHHHHHHHHhhhhcCcchhHhHhhHHHHHhhcCCCCCChHHHHHHHHHHH
Q 025318 43 SLIRNEPVFAAPAPIINPNWREDMANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGF 122 (254)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~a~~~l~~~l~~~~~l~~~aa~~v~~~~~el~~~~~~~p~~~l~~Ll~GN 122 (254)
.|+|+.+.|..+.+........+|.+.+|+.++..+.++|..+.++ ++++++++++++ ++.+++++++|
T Consensus 2 ~i~~~~~~~~~t~~~~~~~~~~~mp~~~~~~~~~~dsrml~~r~~~--~~~~~~~~~~~~---------~~~~~~i~~~F 70 (276)
T KOG1578|consen 2 EILRGVIRFRNTTRKDLVEEIRDMPSPTAVMFTCMDSRMLPTRYNL--VAAAKIKKLTAE---------FDTLEDIGDMF 70 (276)
T ss_pred ccccccchhhhhhHHHhHHHHHhCCCHHHHHHHHHHhhccchhhhh--hhhhhhhhhhhc---------cchHHHHHhhH
Confidence 3889999999999999888888999999999999999999999999 899999999983 67899999999
Q ss_pred HHHHhhhccCChhhHHhhhcCCCCceEEEeecCCCCChhhhcCCCCCceEEEEeccccCCCCCCcccchhHHHHHHHHHh
Q 025318 123 IHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLH 202 (254)
Q Consensus 123 ~~F~~~~~~~~p~~~~~La~gQ~Pk~lVItCsDSRV~Pe~ilg~~pGEaFViRNaGN~V~~~d~~~~~~v~aSLEyAV~~ 202 (254)
..|.++++.++|.+|..++++|+|+.++|+|+||||+|++|++++|||+|++||++|+|+|.|++++.++.++|||+|.+
T Consensus 71 v~~~~~~~~~~p~~f~~~~~~qsp~~l~i~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~~~AalE~aV~~ 150 (276)
T KOG1578|consen 71 VVRNSGNYIPNPTLFGALAKSQSPEPLALECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTNVGAALEYAVTT 150 (276)
T ss_pred hhhccccCCCChhhhHHHhccCCCcceEEEeccccCCCceEEEecCchHhHHHHHHhccCcccccCcccccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988888999999999999
Q ss_pred cCcceEEEeccCCchHHHHhhhcccCCCCCCCccccceee
Q 025318 203 LKVSNIVVIGHSACGGIKGLMSFTFDGNNSTYGLICKLII 242 (254)
Q Consensus 203 L~V~~IVViGHTdCGai~Aal~~~~~g~~~t~fi~~w~~~ 242 (254)
|+|++|+||||++||||+++|....++. .++|+++|+.+
T Consensus 151 lkvenIiv~ghs~cgGik~~m~~~~~~~-~~~f~~~wv~i 189 (276)
T KOG1578|consen 151 LKVENIIVIGHSLCGGIKGLMSFSLEAP-SRSFIENWVYI 189 (276)
T ss_pred hccceEEEeccccCCchhhcccccccCc-chhhhhhheee
Confidence 9999999999999999999999887776 88999999955
No 6
>COG0288 CynT Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-37 Score=273.83 Aligned_cols=121 Identities=38% Similarity=0.647 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHHhhhccCChhhHHhhh-cCCCCceEEEeecCCCCChhhhcCCCCCceEEEEeccccCCCCCCcccch
Q 025318 113 DSVERIKEGFIHFKREKYEKNPALYSELA-KGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAG 191 (254)
Q Consensus 113 ~~l~~Ll~GN~~F~~~~~~~~p~~~~~La-~gQ~Pk~lVItCsDSRV~Pe~ilg~~pGEaFViRNaGN~V~~~d~~~~~~ 191 (254)
..+++|++||++|.++++...+.+|..++ .+|+|+++|||||||||+||.+||.+|||+||+||+||+|++++ .+
T Consensus 2 ~~~~~ll~gn~~f~~~~~~~~~~~~~~l~~~~Q~P~~lii~C~DSRv~~e~i~~~~pGdlfV~RNaGniV~~~~----~~ 77 (207)
T COG0288 2 SALKDLLAGNQRFAEGKFPEQSALFRKLADKGQSPKALIITCSDSRVPPELITGLGPGDLFVIRNAGNIVTHPD----GS 77 (207)
T ss_pred cHHHHHHHHHHHHHhcccccchHHHHHHhccCCCCcEEEEEEccCCCCHHHHhCCCCccEEEEeecccccCCCc----cc
Confidence 36899999999999999888888888876 56999999999999999999999999999999999999999875 36
Q ss_pred hHHHHHHHHHhcCcceEEEeccCCchHHHHhhhcccCCCCCCCccccce
Q 025318 192 VGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTYGLICKL 240 (254)
Q Consensus 192 v~aSLEyAV~~L~V~~IVViGHTdCGai~Aal~~~~~g~~~t~fi~~w~ 240 (254)
+++||||||.+|||++|||||||+|||++|+++....+.. ++..|+
T Consensus 78 ~l~sleyAv~~L~v~~IiV~GH~~CGav~aa~~~~~~~~~---~i~~wl 123 (207)
T COG0288 78 VLRSLEYAVYVLGVKEIIVCGHTDCGAVKAALDDQLEGLK---PIPGWL 123 (207)
T ss_pred hhHHHHHHHHHcCCCEEEEecCCCcHHHHhcccccccccc---ccchhh
Confidence 8999999999999999999999999999999987665554 788887
No 7
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=7.5e-37 Score=263.89 Aligned_cols=110 Identities=42% Similarity=0.647 Sum_probs=101.8
Q ss_pred HHHHHhhhccCChhhHHhhhcCCCCceEEEeecCCCCChhhhcCCCCCceEEEEeccccCCCCCCcccchhHHHHHHHHH
Q 025318 122 FIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVL 201 (254)
Q Consensus 122 N~~F~~~~~~~~p~~~~~La~gQ~Pk~lVItCsDSRV~Pe~ilg~~pGEaFViRNaGN~V~~~d~~~~~~v~aSLEyAV~ 201 (254)
|++|++.++...+++|.+++.+|+|+++|||||||||+|+.+||.+|||+||+||+||+|++.|. ++.++|||||.
T Consensus 1 n~~f~~~~~~~~~~~~~~l~~gQ~P~~~vi~CsDSRv~pe~if~~~~GdlFViRnaGN~v~~~~~----~~~asleyAv~ 76 (182)
T cd00883 1 NRAWAEEKKAKDPDFFPRLAKGQTPEYLWIGCSDSRVPENTILGLLPGEVFVHRNIANLVSPTDL----NCLSVLQYAVD 76 (182)
T ss_pred ChhhhhhccccCHHHHHHhhcCCCCCEEEEEecCCCCCHHHhcCCCCCCEEEEEeeccccCCCCc----chhhhHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999998763 58899999999
Q ss_pred hcCcceEEEeccCCchHHHHhhhcccCCCCCCCccccce
Q 025318 202 HLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTYGLICKL 240 (254)
Q Consensus 202 ~L~V~~IVViGHTdCGai~Aal~~~~~g~~~t~fi~~w~ 240 (254)
+|||++|||||||+||+|+|+++.. ..+++..|+
T Consensus 77 ~L~v~~IvV~GHs~CGav~a~~~~~-----~~~~~~~wl 110 (182)
T cd00883 77 VLKVKHIIVCGHYGCGGVKAALTGK-----RLGLLDNWL 110 (182)
T ss_pred hcCCCEEEEecCCCchHHHHHHcCC-----CCccHHHHH
Confidence 9999999999999999999999653 347788887
No 8
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=8.4e-37 Score=266.09 Aligned_cols=120 Identities=49% Similarity=0.763 Sum_probs=107.8
Q ss_pred HHHHHHhhhccCChhhHHhhhcCCCCceEEEeecCCCCChhhhcCCCCCceEEEEeccccCCCCCCc-ccchhHHHHHHH
Q 025318 121 GFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQT-KYAGVGAAVEYA 199 (254)
Q Consensus 121 GN~~F~~~~~~~~p~~~~~La~gQ~Pk~lVItCsDSRV~Pe~ilg~~pGEaFViRNaGN~V~~~d~~-~~~~v~aSLEyA 199 (254)
||++|++..+..++++|++|+++|+|+++||+||||||+|+.+||.+|||+||+||+||+|++++.. .+.++.++||||
T Consensus 1 G~~~f~~~~~~~~~~~~~~l~~gQ~P~~~~i~C~DsRv~~~~i~~~~~Gd~fv~Rn~gn~v~~~~~~~~~~~~~asleya 80 (190)
T cd00884 1 GFRRFRKEYFPEERELFEKLAKGQSPKALFIACSDSRVVPALITQTQPGELFVVRNVGNLVPPYEPDGGFHGTSAAIEYA 80 (190)
T ss_pred ChHHHHhhhhhhhHHHHHHhccCCCCCeEEEeeeCCCCCHHHHcCCCCCCEEEEeccCCcCCcccccccccchhhhHHHH
Confidence 7999999988889999999999999999999999999999999999999999999999999987542 245789999999
Q ss_pred HHhcCcceEEEeccCCchHHHHhhhcccCCCCCCCcccccee
Q 025318 200 VLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTYGLICKLI 241 (254)
Q Consensus 200 V~~L~V~~IVViGHTdCGai~Aal~~~~~g~~~t~fi~~w~~ 241 (254)
|.+|+|++|||||||+||||+|++.... +....+++..|+.
T Consensus 81 v~~l~v~~ivV~GH~~Cgav~Aa~~~~~-~~~~~~~l~~wl~ 121 (190)
T cd00884 81 VAVLKVEHIVVCGHSDCGGIRALLSPED-LLDKLPFIGKWLR 121 (190)
T ss_pred HHHhCCCEEEEeCCCcchHHHHHhcccc-ccCCcchHHHHHH
Confidence 9999999999999999999999997543 3345679999994
No 9
>PLN02154 carbonic anhydrase
Probab=100.00 E-value=1.7e-36 Score=279.09 Aligned_cols=132 Identities=44% Similarity=0.733 Sum_probs=118.1
Q ss_pred ChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCCCceEEEeecCCCCChhhhcCCCCCceEEEEeccccCCCCCCccc
Q 025318 110 KAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKY 189 (254)
Q Consensus 110 ~p~~~l~~Ll~GN~~F~~~~~~~~p~~~~~La~gQ~Pk~lVItCsDSRV~Pe~ilg~~pGEaFViRNaGN~V~~~d~~~~ 189 (254)
...+.+++|++||++|+.+++..++++|+.|+.+|+|+++||+|+||||+|+.|||.+|||+||+||+||+|++++.. +
T Consensus 71 ~~~~~l~~Ll~gf~~f~~~~~~~~~e~f~~La~GQ~P~~lvi~C~DSRV~pe~if~~~pGdlFvvRN~GNiv~~~~~g-~ 149 (290)
T PLN02154 71 TSYDFLDEMRHRFLKFKRQKYLPEIEKFKALAIAQSPKVMVIGCADSRVCPSYVLGFQPGEAFTIRNVANLVTPVQNG-P 149 (290)
T ss_pred hhHHHHHHHHHHHHHHhhccccccHHHHHHhccCCCCCEEEEEecCCCCCHHHHcCCCCCCEEEEeccCCccCCccCC-c
Confidence 445789999999999999999999999999999999999999999999999999999999999999999999987642 3
Q ss_pred chhHHHHHHHHHhcCcceEEEeccCCchHHHHhhhcccCCCCCCCccccceee
Q 025318 190 AGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTYGLICKLII 242 (254)
Q Consensus 190 ~~v~aSLEyAV~~L~V~~IVViGHTdCGai~Aal~~~~~g~~~t~fi~~w~~~ 242 (254)
.++.++|||||.+|+|++|||||||+||||+|+++.........+++++|+..
T Consensus 150 ~~~~aslEyAv~~L~v~~IvV~GHs~CGAV~Aal~~~~~~~~~~~~v~~Wl~~ 202 (290)
T PLN02154 150 TETNSALEFAVTTLQVENIIVMGHSNCGGIAALMSHQNHQGQHSSLVERWVMN 202 (290)
T ss_pred cchhhHHHHHHHHhCCCEEEEecCCCchHHHHHHhcCccccccchHHHHHHHH
Confidence 47899999999999999999999999999999997533223456799999943
No 10
>PRK10437 carbonic anhydrase; Provisional
Probab=100.00 E-value=1.8e-36 Score=269.88 Aligned_cols=119 Identities=31% Similarity=0.539 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHhhhccCChhhHHhhhcCCCCceEEEeecCCCCChhhhcCCCCCceEEEEeccccCCCCCCcccchhH
Q 025318 114 SVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVG 193 (254)
Q Consensus 114 ~l~~Ll~GN~~F~~~~~~~~p~~~~~La~gQ~Pk~lVItCsDSRV~Pe~ilg~~pGEaFViRNaGN~V~~~d~~~~~~v~ 193 (254)
.+++|++||++|++..+..++++|+.++.+|+|+++|||||||||+|+.+||.+|||+||+||+||+|++.|. ++.
T Consensus 3 ~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~~q~p~~~~i~C~DSRv~p~~i~~~~~Gd~fv~Rn~gn~v~~~~~----~~~ 78 (220)
T PRK10437 3 DIDTLISNNALWSKMLVEEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTDL----NCL 78 (220)
T ss_pred hHHHHHHHHHHHHHhhhccChHHHHhcccCCCCCEEEEEecccCCCHHHhcCCCCCcEEEEeecccccCCCCc----chH
Confidence 4889999999999998888999999999999999999999999999999999999999999999999998764 478
Q ss_pred HHHHHHHHhcCcceEEEeccCCchHHHHhhhcccCCCCCCCcccccee
Q 025318 194 AAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTYGLICKLI 241 (254)
Q Consensus 194 aSLEyAV~~L~V~~IVViGHTdCGai~Aal~~~~~g~~~t~fi~~w~~ 241 (254)
++|||||.+|+|++|||||||+||+|+|+++.. ..+++..|+.
T Consensus 79 ~~leyAV~~L~v~~IvV~GHt~CG~V~Aal~~~-----~~~~i~~wl~ 121 (220)
T PRK10437 79 SVVQYAVDVLEVEHIIICGHYGCGGVQAAVENP-----ELGLINNWLL 121 (220)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCchHHHHHHcCC-----CcccHHHHHH
Confidence 899999999999999999999999999999642 2478999983
No 11
>PRK15219 carbonic anhydrase; Provisional
Probab=100.00 E-value=2.4e-36 Score=272.80 Aligned_cols=121 Identities=27% Similarity=0.394 Sum_probs=106.4
Q ss_pred CCChHHHHHHHHHHHHHHHhhhccCChhhHH---hhhcCCCCceEEEeecCCCCChhhhcCCCCCceEEEEeccccCCCC
Q 025318 108 DTKAFDSVERIKEGFIHFKREKYEKNPALYS---ELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPY 184 (254)
Q Consensus 108 ~~~p~~~l~~Ll~GN~~F~~~~~~~~p~~~~---~La~gQ~Pk~lVItCsDSRV~Pe~ilg~~pGEaFViRNaGN~V~~~ 184 (254)
..+|.+.+++|++||++|+++.+. .++++. ++++||+|+++||+|+||||+||.|||.+|||+||+||+||+|++
T Consensus 50 ~~~p~~al~~L~~GN~rF~~~~~~-~~~~~~~~~~la~gQ~P~a~vi~CsDSRV~pe~ifd~~~GdlFvvRnaGN~v~~- 127 (245)
T PRK15219 50 KMTPDQIIESLKQGNKRFRSGKPA-QHDYLAQKRASAAGQYPAAVILSCIDSRAPAEIILDTGIGETFNSRVAGNISND- 127 (245)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCcC-CchhhHHhhhhccCCCCeEEEEecccCCCCHHHHhCCCCCcEEEEeccccccCc-
Confidence 467999999999999999998875 343332 457899999999999999999999999999999999999999974
Q ss_pred CCcccchhHHHHHHHHHhcCcceEEEeccCCchHHHHhhhcccCCCCCCCcccccee
Q 025318 185 DQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTYGLICKLI 241 (254)
Q Consensus 185 d~~~~~~v~aSLEyAV~~L~V~~IVViGHTdCGai~Aal~~~~~g~~~t~fi~~w~~ 241 (254)
++.++|||||.+|+|++|||||||+||+|+|+++.. ..+++..|+.
T Consensus 128 ------~~~~slEyAv~~L~v~~IvVlGHt~CGav~Aa~~~~-----~~g~l~~wl~ 173 (245)
T PRK15219 128 ------DLLGSMEFACAVAGAKVVLVMGHTACGAVKGAIDNV-----ELGNLTGLLD 173 (245)
T ss_pred ------chhhHHHHHHHHcCCCEEEEecCCcchHHHHHHhcC-----CcchHHHHHH
Confidence 367899999999999999999999999999999753 2468899984
No 12
>cd03378 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=7.7e-34 Score=240.94 Aligned_cols=105 Identities=42% Similarity=0.603 Sum_probs=95.7
Q ss_pred hHHHHHHHHHHHHHHHhhhccC---ChhhHHhhhcCCCCceEEEeecCCCCChhhhcCCCCCceEEEEeccccCCCCCCc
Q 025318 111 AFDSVERIKEGFIHFKREKYEK---NPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQT 187 (254)
Q Consensus 111 p~~~l~~Ll~GN~~F~~~~~~~---~p~~~~~La~gQ~Pk~lVItCsDSRV~Pe~ilg~~pGEaFViRNaGN~V~~~d~~ 187 (254)
|++.+++|++||++|++++... +++.|..++++|+|+++||||||||++|+.+||++|||+||+||+||+|++
T Consensus 1 p~~~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~l~~~q~P~~~vitC~DsRv~~~~i~~~~~Gd~fviRn~gn~v~~---- 76 (154)
T cd03378 1 PDEALERLKEGNKRFVSGKPLHPDQDLARRRELAKGQKPFAVILSCSDSRVPPEIIFDQGLGDLFVVRVAGNIVDD---- 76 (154)
T ss_pred ChHHHHHHHHHHHHHHhcCccCccccHHHHHHhccCCCCcEEEEEcCCCCCCHHHHcCCCCCCEEEEeccccccCh----
Confidence 5678999999999999875431 255688899999999999999999999999999999999999999999975
Q ss_pred ccchhHHHHHHHHHhcCcceEEEeccCCchHHHHh
Q 025318 188 KYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGL 222 (254)
Q Consensus 188 ~~~~v~aSLEyAV~~L~V~~IVViGHTdCGai~Aa 222 (254)
++.++||||+.+|+|++|||||||+||+++++
T Consensus 77 ---~~~~sl~yav~~l~v~~IvV~GHt~CG~~~a~ 108 (154)
T cd03378 77 ---DVLGSLEYAVEVLGVPLVVVLGHESCGAVAAA 108 (154)
T ss_pred ---hHHHHHHHHHHHhCCCEEEEEcCCCccHHHHH
Confidence 47889999999999999999999999999987
No 13
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=99.95 E-value=9.1e-29 Score=200.67 Aligned_cols=76 Identities=51% Similarity=0.921 Sum_probs=71.4
Q ss_pred CCCceEEEeecCCCCChhhhcCCCCCceEEEEeccccCCCCCCcccchhHHHHHHHHHhcCcceEEEeccCCchHHHHhh
Q 025318 144 QSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLM 223 (254)
Q Consensus 144 Q~Pk~lVItCsDSRV~Pe~ilg~~pGEaFViRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~V~~IVViGHTdCGai~Aal 223 (254)
|+|+++||||||||++|+.+||++|||+||+||+||+|.+.+ .+++++||||+..||+++|+|||||+||++++..
T Consensus 1 q~p~~~vltC~DsRv~~~~~~~~~~Gd~fv~Rn~Gn~v~~~~----~~~~~sl~~av~~l~v~~ivV~gHt~CG~v~a~~ 76 (119)
T cd00382 1 QKPKALIIGCSDSRVPPELIFGLGPGDLFVVRNAGNLVPPYD----LDVLASLEYAVEVLGVKHIIVCGHTDCGAVKALV 76 (119)
T ss_pred CCCeEEEEEeeCCCCCHHHHhCCCCCCEEEEeccCCcCCCCc----ccHHHHHHHHHHhhCCCEEEEEccCCCcHHHHHH
Confidence 789999999999999999999999999999999999999764 4689999999999999999999999999999743
No 14
>PF00484 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Carbonic anhydrases (4.2.1.1 from EC) (CA) are zinc metalloenzymes which catalyze the reversible hydration of carbon dioxide. In Escherichia coli, CA (gene cynT) is involved in recycling carbon dioxide formed in the bicarbonate-dependent decomposition of cyanate by cyanase (gene cynS). By this action, it prevents the depletion of cellular bicarbonate []. In photosynthetic bacteria and plant chloroplast, CA is essential to inorganic carbon fixation []. Prokaryotic and plant chloroplast CA are structurally and evolutionary related and form a family distinct from the one which groups the many different forms of eukaryotic CA's (see IPR001148 from INTERPRO). Hypothetical proteins yadF from Escherichia coli and HI1301 from Haemophilus influenzae also belong to this family. This family also includes, YbcF and related proteins, which are inactive homologues of bacterial carbonic anhydrase.; GO: 0004089 carbonate dehydratase activity, 0008270 zinc ion binding; PDB: 1DDZ_B 3LAS_A 2W3N_A 2W3Q_A 1G5C_F 3E2A_A 3E2X_B 2A8C_A 2A8D_D 3E3F_A ....
Probab=99.95 E-value=9.5e-29 Score=204.70 Aligned_cols=86 Identities=43% Similarity=0.668 Sum_probs=71.3
Q ss_pred eEEEeecCCCCChhhhcCCCCCceEEEEeccccCCCCCCcccchhHHHHHHHHHhcCcceEEEeccCCchHHHHhhhccc
Q 025318 148 YMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTF 227 (254)
Q Consensus 148 ~lVItCsDSRV~Pe~ilg~~pGEaFViRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~V~~IVViGHTdCGai~Aal~~~~ 227 (254)
++||||||||++|+.+||.+|||+||+||+||+|++.+ .+++++||||+.+|++++|||||||+||++++++....
T Consensus 1 a~vi~C~DsR~~~~~~~~~~~Gd~fviRnaGn~v~~~~----~~~~~sle~av~~l~v~~IiV~gHt~CGa~~~~~~~~~ 76 (153)
T PF00484_consen 1 ALVITCSDSRVPPEEIFGLKPGDLFVIRNAGNRVPPPD----DSALASLEYAVYHLGVKEIIVCGHTDCGAIKAALDSEE 76 (153)
T ss_dssp EEEEEETTTTSTHHHHHTS-TTSEEEEEETTG---TT-----HHHHHHHHHHHHTST-SEEEEEEETT-HHHHHHHHHSH
T ss_pred CEEEEEcCCCCCHHHHhCCCCcceeeeeEEeeecCccc----cchhhheeeeeecCCCCEEEEEcCCCchHHHHHHhhcc
Confidence 58999999999999999999999999999999998764 46899999999999999999999999999999887322
Q ss_pred CCCCCCCcccccee
Q 025318 228 DGNNSTYGLICKLI 241 (254)
Q Consensus 228 ~g~~~t~fi~~w~~ 241 (254)
..+++++|+.
T Consensus 77 ----~~~~l~~~l~ 86 (153)
T PF00484_consen 77 ----EDGFLRDWLQ 86 (153)
T ss_dssp ----TCSHHHHHHH
T ss_pred ----ccchHHHHHH
Confidence 4678888984
No 15
>cd03379 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=99.93 E-value=7e-27 Score=194.41 Aligned_cols=75 Identities=27% Similarity=0.401 Sum_probs=69.8
Q ss_pred CCCceEEEeecCCCCChhhhcCCCCCceEEEEeccccCCCCCCcccchhHHHHHHHHHhcCcceEEEeccCCchHHHHhh
Q 025318 144 QSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLM 223 (254)
Q Consensus 144 Q~Pk~lVItCsDSRV~Pe~ilg~~pGEaFViRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~V~~IVViGHTdCGai~Aal 223 (254)
+.++++||||||||++|+.+||.+|||+||+||+||+|++ +++++|+||+.+||+++|+|||||+||+++++.
T Consensus 1 ~~~~~~vitC~DsRv~~e~i~~~~~GdlfviRnaGn~V~~-------~~~~sl~~av~~l~~~~IiV~gHt~Cg~~~a~~ 73 (142)
T cd03379 1 PARKLAIVTCMDARLDPEKALGLKLGDAKVIRNAGGRVTD-------DAIRSLVVSVYLLGTREIIVIHHTDCGMLTFTD 73 (142)
T ss_pred CCceEEEEEEeCCCCCHHHHcCCCCCcEEEEeccCCccCH-------hHHHHHHHHHHHhCCCEEEEEeecCCcceEecH
Confidence 3679999999999999999999999999999999999986 377899999999999999999999999999886
Q ss_pred hc
Q 025318 224 SF 225 (254)
Q Consensus 224 ~~ 225 (254)
+.
T Consensus 74 ~~ 75 (142)
T cd03379 74 EE 75 (142)
T ss_pred HH
Confidence 54
No 16
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=98.21 E-value=3e-08 Score=91.49 Aligned_cols=120 Identities=28% Similarity=0.398 Sum_probs=90.1
Q ss_pred HHHHHHHHHhhhccCChhhHHhhhcCCCCceEEEeecCCCCChhhh----------------cCCCCCceEEEEeccccC
Q 025318 118 IKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHV----------------LDFQPGEAFVVRNVANIV 181 (254)
Q Consensus 118 Ll~GN~~F~~~~~~~~p~~~~~La~gQ~Pk~lVItCsDSRV~Pe~i----------------lg~~pGEaFViRNaGN~V 181 (254)
|+.|..+|+...... +-.++..-++|.+..++|+|+|.-|... +..+.||.|++||.||..
T Consensus 3 i~~~~~~~~~t~~~~---~~~~~~~mp~~~~~~~~~~dsrml~~r~~~~~~~~~~~~~~~~~~~~~i~~~Fv~~~~~~~~ 79 (276)
T KOG1578|consen 3 ILRGVIRFRNTTRKD---LVEEIRDMPSPTAVMFTCMDSRMLPTRYNLVAAAKIKKLTAEFDTLEDIGDMFVVRNSGNYI 79 (276)
T ss_pred cccccchhhhhhHHH---hHHHHHhCCCHHHHHHHHHHhhccchhhhhhhhhhhhhhhhccchHHHHHhhHhhhccccCC
Confidence 666778888876432 2356777889999999999999999877 667899999999999999
Q ss_pred CCCCCcc-----cchhHHHHHHHHHhcCcceEEEeccCCchHHHHhhhccc--CCCCCC---Cccccce
Q 025318 182 PPYDQTK-----YAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTF--DGNNST---YGLICKL 240 (254)
Q Consensus 182 ~~~d~~~-----~~~v~aSLEyAV~~L~V~~IVViGHTdCGai~Aal~~~~--~g~~~t---~fi~~w~ 240 (254)
+...... .+--.++|+.++......||++|||.+|-+++....... +....+ ..+|.||
T Consensus 80 ~~p~~f~~~~~~qsp~~l~i~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~~~AalE~aV 148 (276)
T KOG1578|consen 80 PNPTLFGALAKSQSPEPLALECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTNVGAALEYAV 148 (276)
T ss_pred CChhhhHHHhccCCCcceEEEeccccCCCceEEEecCchHhHHHHHHhccCcccccCcccccchHHHHH
Confidence 8542110 111224678888888999999999999999999887644 212222 4678887
No 17
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=62.06 E-value=27 Score=29.24 Aligned_cols=56 Identities=14% Similarity=0.213 Sum_probs=35.7
Q ss_pred ccCChhhHHhhhcCCCCceEEEeecCCCCChhhhcCCCCCceEEEEeccccCCCCCCcccchhHHHHHHHHHhcC
Q 025318 130 YEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLK 204 (254)
Q Consensus 130 ~~~~p~~~~~La~gQ~Pk~lVItCsDSRV~Pe~ilg~~pGEaFViRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~ 204 (254)
..-+|.+|.+..-.+-| ++|+.|.+..+..+.. ..+++-.++ .||+ +|+||+..+.
T Consensus 57 v~IdP~lF~~f~I~~VP-a~V~~~~~~~c~~~~~--~~~~~~d~v--~Gdv--------------sl~~ALe~ia 112 (130)
T TIGR02742 57 VQIDPQWFKQFDITAVP-AFVVVKDGLACLPEQP--CPESDYDVV--YGNV--------------SLKGALEKMA 112 (130)
T ss_pred EEEChHHHhhcCceEcC-EEEEECCCCcccccCC--CCCCCeeEE--Eecc--------------cHHHHHHHHH
Confidence 33589999988777777 5788888875554332 345554333 3665 5777776554
No 18
>PF12778 PXPV: PXPV repeat (3 copies)
Probab=52.78 E-value=7.4 Score=23.57 Aligned_cols=18 Identities=39% Similarity=0.872 Sum_probs=13.9
Q ss_pred CCCcccCCccccCCCCcc
Q 025318 41 PPSLIRNEPVFAAPAPII 58 (254)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~ 58 (254)
.|..++-+||+.||.|.+
T Consensus 4 ~PVy~~PaPVyvaP~P~~ 21 (22)
T PF12778_consen 4 APVYVAPAPVYVAPAPVY 21 (22)
T ss_pred CCEEeccCceeecCCCcc
Confidence 567778888888888864
No 19
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=42.37 E-value=59 Score=29.75 Aligned_cols=23 Identities=30% Similarity=0.645 Sum_probs=16.9
Q ss_pred cCChhhHHhhhcCCCCceEEEeec
Q 025318 131 EKNPALYSELAKGQSPKYMVFACS 154 (254)
Q Consensus 131 ~~~p~~~~~La~gQ~Pk~lVItCs 154 (254)
.-+|.+|....-.+-|- +|++|.
T Consensus 149 ~IDP~lF~~F~I~~VPa-fVv~C~ 171 (212)
T PRK13730 149 QIDPTLFSQYGIRSVPA-LVVFCS 171 (212)
T ss_pred eECHHHHHhcCCccccE-EEEEcC
Confidence 34888998887777885 556775
No 20
>PF04019 DUF359: Protein of unknown function (DUF359); InterPro: IPR007164 This is family of archaebacterial proteins, which are about 170 amino acids in length. They have no known function. The most conserved portion of the protein contains the sequence GEEDL that may be important for its function.
Probab=40.77 E-value=1.5e+02 Score=24.63 Aligned_cols=80 Identities=15% Similarity=0.081 Sum_probs=63.6
Q ss_pred hhcCCCCceEEEeecCCCCChhhhcCCCCCceEEEEeccccCCCCCCcccchhHHHHHHHHHhcCcceEEEeccCCchHH
Q 025318 140 LAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGI 219 (254)
Q Consensus 140 La~gQ~Pk~lVItCsDSRV~Pe~ilg~~pGEaFViRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~V~~IVViGHTdCGai 219 (254)
+..|..|...+|-+=--|-....... .....+.++|..+.+.. ++..+|..|+..-+--.|+|-|-.|=-++
T Consensus 6 l~~g~~P~laIvD~kTkR~~~~~~~~-~~~~~i~v~NPpG~It~-------el~~ai~~a~~~~~~~~I~V~GEEDL~~l 77 (121)
T PF04019_consen 6 LEAGIIPDLAIVDGKTKREPVVEEVR-KFYRVIEVKNPPGTITE-------ELIEAIKKALESGKPVVIFVDGEEDLAVL 77 (121)
T ss_pred HhCCCCCCEEEEeCcccccCCccccc-CCceEEEEECCCCcccH-------HHHHHHHHHHhCCCCEEEEEeChHHHHHH
Confidence 45688999999998888887755444 55678899999998874 46668889877766679999999999999
Q ss_pred HHhhhccc
Q 025318 220 KGLMSFTF 227 (254)
Q Consensus 220 ~Aal~~~~ 227 (254)
-+.+-.+.
T Consensus 78 Pail~aP~ 85 (121)
T PF04019_consen 78 PAILYAPE 85 (121)
T ss_pred HHHHhCCC
Confidence 88776664
No 21
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=35.94 E-value=46 Score=27.73 Aligned_cols=33 Identities=18% Similarity=0.178 Sum_probs=24.8
Q ss_pred hHHHHHHHHHhcCcceEEEeccCCchHHHHhhh
Q 025318 192 VGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMS 224 (254)
Q Consensus 192 v~aSLEyAV~~L~V~~IVViGHTdCGai~Aal~ 224 (254)
....+...+..++.+.++|+|||--|.+...+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~liG~S~Gg~ia~~~a 114 (288)
T TIGR01250 82 FVDELEEVREKLGLDKFYLLGHSWGGMLAQEYA 114 (288)
T ss_pred HHHHHHHHHHHcCCCcEEEEEeehHHHHHHHHH
Confidence 334455556788999999999999998866543
No 22
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=35.14 E-value=36 Score=28.35 Aligned_cols=34 Identities=29% Similarity=0.394 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHh-----cCcceEEEeccCCchHHHHhhh
Q 025318 191 GVGAAVEYAVLH-----LKVSNIVVIGHSACGGIKGLMS 224 (254)
Q Consensus 191 ~v~aSLEyAV~~-----L~V~~IVViGHTdCGai~Aal~ 224 (254)
.+.+++++...+ ...+.|+|+|||.-|.+.+.+.
T Consensus 51 D~~~a~~~l~~~~~~~~~d~~~i~l~G~SAGg~la~~~~ 89 (211)
T PF07859_consen 51 DVKAAYRWLLKNADKLGIDPERIVLIGDSAGGHLALSLA 89 (211)
T ss_dssp HHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHH
T ss_pred ccccceeeeccccccccccccceEEeecccccchhhhhh
Confidence 467788888887 6678999999999998876544
No 23
>PRK11440 putative hydrolase; Provisional
Probab=34.92 E-value=75 Score=26.95 Aligned_cols=48 Identities=17% Similarity=0.148 Sum_probs=30.7
Q ss_pred cCCCCCceEEEEeccccCCCCCCcccchhHHHHHHHHHhcCcceEEEeccCCchHHHH
Q 025318 164 LDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKG 221 (254)
Q Consensus 164 lg~~pGEaFViRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~V~~IVViGHTdCGai~A 221 (254)
+...+||.++.++--+-... . .|+.-+...|+++|||+|=+-..-|..
T Consensus 90 l~~~~~d~vi~K~~~saF~~--------T--~L~~~L~~~gi~~lii~Gv~T~~CV~~ 137 (188)
T PRK11440 90 LGKTDSDIEVTKRQWGAFYG--------T--DLELQLRRRGIDTIVLCGISTNIGVES 137 (188)
T ss_pred cCCCCCCEEEecCCcCCCCC--------C--CHHHHHHHCCCCEEEEeeechhHHHHH
Confidence 45678898777765443321 1 356557789999999999554444433
No 24
>PRK03592 haloalkane dehalogenase; Provisional
Probab=32.26 E-value=49 Score=29.15 Aligned_cols=33 Identities=12% Similarity=0.098 Sum_probs=25.7
Q ss_pred hHHHHHHHHHhcCcceEEEeccCCchHHHHhhh
Q 025318 192 VGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMS 224 (254)
Q Consensus 192 v~aSLEyAV~~L~V~~IVViGHTdCGai~Aal~ 224 (254)
....+.-.+..++.+.++|+|||--|.+...+.
T Consensus 79 ~a~dl~~ll~~l~~~~~~lvGhS~Gg~ia~~~a 111 (295)
T PRK03592 79 HARYLDAWFDALGLDDVVLVGHDWGSALGFDWA 111 (295)
T ss_pred HHHHHHHHHHHhCCCCeEEEEECHHHHHHHHHH
Confidence 334556567789999999999999999876554
No 25
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=32.01 E-value=64 Score=31.40 Aligned_cols=43 Identities=23% Similarity=0.372 Sum_probs=31.8
Q ss_pred hhhcCCCCCceEEEEeccccCCCCCCcccchhHH-HHHHHHHhcCcceEEEeccCC
Q 025318 161 SHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGA-AVEYAVLHLKVSNIVVIGHSA 215 (254)
Q Consensus 161 e~ilg~~pGEaFViRNaGN~V~~~d~~~~~~v~a-SLEyAV~~L~V~~IVViGHTd 215 (254)
.++-++++|| .||.|.||-. |+. .|+. +..+|++.|=|+-.-+
T Consensus 153 ~dfv~L~~GD-~vIQNganS~----------VG~~ViQl-aka~GiktinvVRdR~ 196 (354)
T KOG0025|consen 153 KDFVQLNKGD-SVIQNGANSG----------VGQAVIQL-AKALGIKTINVVRDRP 196 (354)
T ss_pred HHHHhcCCCC-eeeecCcccH----------HHHHHHHH-HHHhCcceEEEeecCc
Confidence 4678999999 8999999953 443 3454 5789999887776543
No 26
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=31.58 E-value=57 Score=25.74 Aligned_cols=32 Identities=19% Similarity=0.283 Sum_probs=24.7
Q ss_pred hHHHHHHHHHhcCcceEEEeccCCchHHHHhh
Q 025318 192 VGAAVEYAVLHLKVSNIVVIGHSACGGIKGLM 223 (254)
Q Consensus 192 v~aSLEyAV~~L~V~~IVViGHTdCGai~Aal 223 (254)
....|...+..++.+.++++|||-=|.+...+
T Consensus 52 ~~~~l~~~l~~~~~~~~~lvG~S~Gg~~a~~~ 83 (228)
T PF12697_consen 52 YAEDLAELLDALGIKKVILVGHSMGGMIALRL 83 (228)
T ss_dssp HHHHHHHHHHHTTTSSEEEEEETHHHHHHHHH
T ss_pred hhhhhhhccccccccccccccccccccccccc
Confidence 34567777889999999999999877665544
No 27
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=30.53 E-value=56 Score=26.55 Aligned_cols=33 Identities=24% Similarity=0.250 Sum_probs=26.3
Q ss_pred chhHHHHHHHHHhcCcceEEEeccCCchHHHHh
Q 025318 190 AGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGL 222 (254)
Q Consensus 190 ~~v~aSLEyAV~~L~V~~IVViGHTdCGai~Aa 222 (254)
..+.+.+++-...++++.+.++|||-=|.+...
T Consensus 28 ~~~~~~~~~~~~~l~~~~~~~vG~S~Gg~~~~~ 60 (230)
T PF00561_consen 28 DDLAADLEALREALGIKKINLVGHSMGGMLALE 60 (230)
T ss_dssp HHHHHHHHHHHHHHTTSSEEEEEETHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEECCChHHHHH
Confidence 456788999999999999999999984444433
No 28
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=28.96 E-value=61 Score=28.51 Aligned_cols=32 Identities=16% Similarity=0.050 Sum_probs=24.0
Q ss_pred HHHHHHHHHhcCcceEEEeccCCchHHHHhhh
Q 025318 193 GAAVEYAVLHLKVSNIVVIGHSACGGIKGLMS 224 (254)
Q Consensus 193 ~aSLEyAV~~L~V~~IVViGHTdCGai~Aal~ 224 (254)
...|.-.+..++.+.++++|||--|.+...+.
T Consensus 89 a~~l~~~l~~l~~~~~~lvGhS~Gg~va~~~a 120 (294)
T PLN02824 89 GEQLNDFCSDVVGDPAFVICNSVGGVVGLQAA 120 (294)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCHHHHHHHHHH
Confidence 33455456678899999999999998876443
No 29
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=28.61 E-value=1.7e+02 Score=23.82 Aligned_cols=46 Identities=9% Similarity=0.144 Sum_probs=32.8
Q ss_pred CCceEEEEeccccCCCCCCcccchhHHHHHHHHHhcCcceEEEeccCCchHHHHhh
Q 025318 168 PGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLM 223 (254)
Q Consensus 168 pGEaFViRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~V~~IVViGHTdCGai~Aal 223 (254)
+||..+.++--|..... .|+.-+...|+++|+|+|-.-.+-|.+..
T Consensus 85 ~~~~vi~K~~~saf~~t----------~L~~~L~~~gi~~vil~G~~t~~CV~~Ta 130 (174)
T PF00857_consen 85 PGDPVIEKNRYSAFFGT----------DLDEILRKRGIDTVILCGVATDVCVLATA 130 (174)
T ss_dssp TTSEEEEESSSSTTTTS----------SHHHHHHHTTESEEEEEEESTTTHHHHHH
T ss_pred cccceEEeecccccccc----------cccccccccccceEEEcccccCcEEehhH
Confidence 38999999866655321 25555778999999999976666665543
No 30
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=27.89 E-value=1.1e+02 Score=23.30 Aligned_cols=18 Identities=33% Similarity=0.632 Sum_probs=14.5
Q ss_pred hhhhcHHHHHHHHHHHhh
Q 025318 66 MANQSYEEAIEALKKLLK 83 (254)
Q Consensus 66 ~~~~s~~~a~~~l~~~l~ 83 (254)
|...+||+|+.+|..+++
T Consensus 1 m~~~~fEeal~~LE~IV~ 18 (75)
T PRK14066 1 MAVEKFETALKKLEEVVK 18 (75)
T ss_pred CccccHHHHHHHHHHHHH
Confidence 667789999998887765
No 31
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=27.47 E-value=34 Score=31.86 Aligned_cols=17 Identities=29% Similarity=0.581 Sum_probs=13.7
Q ss_pred CcceEEEeccCCchHHH
Q 025318 204 KVSNIVVIGHSACGGIK 220 (254)
Q Consensus 204 ~V~~IVViGHTdCGai~ 220 (254)
.-+-|-|+|||+||=-+
T Consensus 28 ~GEfvsilGpSGcGKST 44 (248)
T COG1116 28 KGEFVAILGPSGCGKST 44 (248)
T ss_pred CCCEEEEECCCCCCHHH
Confidence 34689999999999654
No 32
>PF01368 DHH: DHH family; InterPro: IPR001667 This is a domain of predicted phosphoesterases that includes Drosophila prune protein and bacterial RecJ exonuclease []. The RecJ protein of Escherichia coli plays an important role in a number of DNA repair and recombination pathways. RecJ catalyzes processive degradation of single-stranded DNA in a 5'-to-3' direction. Sequences highly related to those encoding RecJ can be found in many of the eubacterial genomes sequenced to date [].; GO: 0016787 hydrolase activity, 0030145 manganese ion binding; PDB: 3DEV_A 2HAW_A 1WPN_A 1WPM_B 2IW4_B 1K23_D 2EB0_A 1I74_A 2ZXR_A 2ZXO_A ....
Probab=25.98 E-value=56 Score=25.72 Aligned_cols=21 Identities=19% Similarity=0.572 Sum_probs=16.9
Q ss_pred CcceEEEeccC--CchHHHHhhh
Q 025318 204 KVSNIVVIGHS--ACGGIKGLMS 224 (254)
Q Consensus 204 ~V~~IVViGHT--dCGai~Aal~ 224 (254)
+-+.|+|+||. |+-|+.+++.
T Consensus 4 ~~~~i~i~~H~~~D~Dgl~Sa~~ 26 (145)
T PF01368_consen 4 EAERILIVGHINPDADGLGSAIA 26 (145)
T ss_dssp TTSEEEEEEBSS-SHHHHHHHHH
T ss_pred CCCEEEEEccCCCCchHHHHHHH
Confidence 45789999999 8888877653
No 33
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=25.73 E-value=1.3e+02 Score=24.44 Aligned_cols=39 Identities=31% Similarity=0.425 Sum_probs=24.0
Q ss_pred cCCCCCceE-EEEeccccCCCCCCcccchhHHHHHHHHHhcCcceEEEec
Q 025318 164 LDFQPGEAF-VVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIG 212 (254)
Q Consensus 164 lg~~pGEaF-ViRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~V~~IVViG 212 (254)
.+.+|||++ ++-+-||. ..+..++++| ...|++.|.|.|
T Consensus 99 ~~~~~gDvli~iS~SG~s---------~~vi~a~~~A-k~~G~~vIalTg 138 (138)
T PF13580_consen 99 YDIRPGDVLIVISNSGNS---------PNVIEAAEEA-KERGMKVIALTG 138 (138)
T ss_dssp TT--TT-EEEEEESSS-S---------HHHHHHHHHH-HHTT-EEEEEEE
T ss_pred cCCCCCCEEEEECCCCCC---------HHHHHHHHHH-HHCCCEEEEEeC
Confidence 458999976 56666775 2467788887 578888887765
No 34
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=24.47 E-value=1e+02 Score=28.38 Aligned_cols=70 Identities=13% Similarity=0.201 Sum_probs=42.0
Q ss_pred cccCCCCccCcchhHHhhhhcHHHHHHHHHHHhhhhcCcchhHhHhhHHHHHhhcCCCC--CChHHHHHHHHHHHHHH
Q 025318 50 VFAAPAPIINPNWREDMANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSD--TKAFDSVERIKEGFIHF 125 (254)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~s~~~a~~~l~~~l~~~~~l~~~aa~~v~~~~~el~~~~~--~~p~~~l~~Ll~GN~~F 125 (254)
+++||+|+ .|....|.++-+..|..++.........-..+++.+-+|+...+. ..-..-++.++++.+.+
T Consensus 23 ~~~a~a~v------~~~~~~~~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~ 94 (263)
T PRK10803 23 AAFAQAPI------SSVGSGSVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQI 94 (263)
T ss_pred HHhcCCcH------HHcCCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 56789998 355577788888888877766554433345666666666644221 11123466666665554
No 35
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=24.15 E-value=89 Score=27.90 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=19.8
Q ss_pred hHHHHHHHHHhc-CcceEEEeccCCchHHHHhh
Q 025318 192 VGAAVEYAVLHL-KVSNIVVIGHSACGGIKGLM 223 (254)
Q Consensus 192 v~aSLEyAV~~L-~V~~IVViGHTdCGai~Aal 223 (254)
+.+++++....+ +.+.|+++||+- ||+-+++
T Consensus 85 ~~~~~~~l~~~~~g~~~i~l~G~S~-Gg~~a~~ 116 (274)
T TIGR03100 85 IAAAIDAFREAAPHLRRIVAWGLCD-AASAALL 116 (274)
T ss_pred HHHHHHHHHhhCCCCCcEEEEEECH-HHHHHHH
Confidence 455566533333 678899999998 5554443
No 36
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
Probab=22.68 E-value=1.7e+02 Score=24.54 Aligned_cols=52 Identities=17% Similarity=0.162 Sum_probs=31.0
Q ss_pred CCCCCceEEEEeccccCCCCCCcccchhHHHHHHHHHhcCcceEEEeccC-CchHHHHhhhcc
Q 025318 165 DFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHS-ACGGIKGLMSFT 226 (254)
Q Consensus 165 g~~pGEaFViRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~V~~IVViGHT-dCGai~Aal~~~ 226 (254)
.-.+||..+.++.=+ .+. + ..|+.-+...|+++|||+|=. +|.....+.+..
T Consensus 84 ~~~~~~~v~~K~~~s---aF~-----~--t~L~~~L~~~gi~~vvi~G~~t~~CV~~Ta~~A~ 136 (179)
T cd01015 84 APQEDEMVLVKKYAS---AFF-----G--TSLAATLTARGVDTLIVAGCSTSGCIRATAVDAM 136 (179)
T ss_pred CCCCCCEEEecCccC---Ccc-----C--CcHHHHHHHcCCCEEEEeeecccHhHHHHHHHHH
Confidence 445778766665322 221 1 147777789999999999954 444444444443
No 37
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=22.03 E-value=71 Score=29.85 Aligned_cols=18 Identities=44% Similarity=0.739 Sum_probs=13.8
Q ss_pred hcHHHHHHHHHHHhhhhc
Q 025318 69 QSYEEAIEALKKLLKEKE 86 (254)
Q Consensus 69 ~s~~~a~~~l~~~l~~~~ 86 (254)
+-||+|++.+|++|+--.
T Consensus 182 ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDP 199 (271)
T ss_pred hhHHHHHHHHHHHHHhCc
Confidence 558899999998886433
No 38
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=21.83 E-value=1.3e+02 Score=23.46 Aligned_cols=33 Identities=27% Similarity=0.329 Sum_probs=24.0
Q ss_pred hHHHHHHHHHhcCcceEEEeccCCchHHHHhhh
Q 025318 192 VGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMS 224 (254)
Q Consensus 192 v~aSLEyAV~~L~V~~IVViGHTdCGai~Aal~ 224 (254)
+...|.-.+...+-..|+|.|||==|++..++.
T Consensus 50 ~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a 82 (140)
T PF01764_consen 50 ILDALKELVEKYPDYSIVITGHSLGGALASLAA 82 (140)
T ss_dssp HHHHHHHHHHHSTTSEEEEEEETHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCccchhhccchHHHHHHHHH
Confidence 444555555566667999999999999876554
No 39
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=21.44 E-value=57 Score=27.32 Aligned_cols=18 Identities=11% Similarity=0.307 Sum_probs=14.7
Q ss_pred CcceEEEeccCCchHHHH
Q 025318 204 KVSNIVVIGHSACGGIKG 221 (254)
Q Consensus 204 ~V~~IVViGHTdCGai~A 221 (254)
++..|+|+||.+||=...
T Consensus 40 ~~~~I~iiG~~g~GKStL 57 (204)
T cd01878 40 GIPTVALVGYTNAGKSTL 57 (204)
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 467999999999996543
No 40
>KOG2781 consensus U3 small nucleolar ribonucleoprotein (snoRNP) component [RNA processing and modification]
Probab=20.89 E-value=1.7e+02 Score=27.73 Aligned_cols=65 Identities=22% Similarity=0.175 Sum_probs=34.2
Q ss_pred hhcCCCCceEEEeecCCCCChhhhcCCCCCceEEEEeccccCCCCCCcccchhHHHHHHHHHhcCcceEEEecc
Q 025318 140 LAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGH 213 (254)
Q Consensus 140 La~gQ~Pk~lVItCsDSRV~Pe~ilg~~pGEaFViRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~V~~IVViGH 213 (254)
.+.-+.||+||-| ||=|-+.+..+.--=-+|+=|+-++--.. -+...|--|+...++-.+||++-
T Consensus 77 ~ag~~dPKimvTT---SR~PSsrL~~FaKelkLvfPNaqr~nRG~------~~~~~lv~a~ra~~~Td~iivHE 141 (290)
T KOG2781|consen 77 WAGEEDPKIMVTT---SRDPSSRLKMFAKELKLVFPNAQRLNRGN------YVVGELVDAARANGVTDLIIVHE 141 (290)
T ss_pred hccCCCCcEEEEe---CCCchHHHHHHHHhheEeccChhhhcccc------eeHHHHHHHHHHCCCceEEEEec
Confidence 3566899988766 44444444443322234554443332211 02234555777888877766643
No 41
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=20.41 E-value=1.4e+02 Score=23.99 Aligned_cols=31 Identities=26% Similarity=0.211 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHhcCcceEEEeccCCchHHHH
Q 025318 191 GVGAAVEYAVLHLKVSNIVVIGHSACGGIKG 221 (254)
Q Consensus 191 ~v~aSLEyAV~~L~V~~IVViGHTdCGai~A 221 (254)
.....+...+..++.+.|+|+|||-=|.+..
T Consensus 64 ~~~~~~~~~i~~~~~~~v~liG~S~Gg~~a~ 94 (251)
T TIGR02427 64 DLADDVLALLDHLGIERAVFCGLSLGGLIAQ 94 (251)
T ss_pred HHHHHHHHHHHHhCCCceEEEEeCchHHHHH
Confidence 3445677778888999999999999887654
No 42
>PRK09778 putative antitoxin of the YafO-YafN toxin-antitoxin system; Provisional
Probab=20.25 E-value=1.3e+02 Score=24.41 Aligned_cols=32 Identities=22% Similarity=0.129 Sum_probs=18.5
Q ss_pred cccccccccccccCC--CCceEEEeecCCCCCCCcccCCcccc
Q 025318 12 TSVSQAQSSLIKSST--LRPSIVARLNSPASPPSLIRNEPVFA 52 (254)
Q Consensus 12 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (254)
+..+.+-|-+||.+. ++.--+ --|=||+|.|-
T Consensus 6 A~~taSISELKKNP~~~~~g~PV---------AILNhN~PafY 39 (97)
T PRK09778 6 AEKSVNITELRKNPAKYFIDQPV---------AVLSNNRPAGY 39 (97)
T ss_pred hhhhccHHHHhhCHHHHhcCCce---------EEecCCceeEE
Confidence 344455577888544 332222 33458999987
Done!