BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025322
(254 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F0N|A Chain A, Mus Musculus Mevalonate Pyrophosphate Decarboxylase
pdb|3F0N|B Chain B, Mus Musculus Mevalonate Pyrophosphate Decarboxylase
Length = 414
Score = 227 bits (578), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 118/228 (51%), Positives = 152/228 (66%), Gaps = 5/228 (2%)
Query: 8 LMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWL 67
LMVT P NIAVIKYWGKRDE LILP+N S+SVTL D L TTTTVA+S F +DR+WL
Sbjct: 22 LMVTCTAPVNIAVIKYWGKRDEALILPINSSLSVTLHQDQLKTTTTVAISKDFTEDRIWL 81
Query: 68 NGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTXXXXX 127
NG+E +G R Q CL+EIR A TE G + K +H+AS NNFPT
Sbjct: 82 NGREEDVGQPRLQACLREIRRLARKRRSTEDGDTLPLSLSYK--VHVASVNNFPTAAGLA 139
Query: 128 XXXXXXXCLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSL 187
CL ++LA++ + + LS +AR+GSGSACRSL+GGFV+W +G++ +G DS+
Sbjct: 140 SSAAGYACLAYTLAQVYGV---EGDLSEVARRGSGSACRSLYGGFVEWQMGEQADGKDSI 196
Query: 188 AVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAK 235
A Q+ E HW L I+I VVS+ +K+T ST GM+ SVETS LL+ RA+
Sbjct: 197 ARQIAPEWHWPQLRILILVVSADKKQTGSTVGMQTSVETSTLLKFRAE 244
>pdb|3D4J|A Chain A, Crystal Structure Of Human Mevalonate Diphosphate
Decarboxylase
pdb|3D4J|B Chain B, Crystal Structure Of Human Mevalonate Diphosphate
Decarboxylase
Length = 400
Score = 226 bits (576), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 115/235 (48%), Positives = 154/235 (65%), Gaps = 5/235 (2%)
Query: 1 MAAEKWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSF 60
MA+EK + VT P NIAVIKYWGKRDE L+LP+N S+SVTL D L TTTT +S F
Sbjct: 1 MASEKPLAAVTCTAPVNIAVIKYWGKRDEELVLPINSSLSVTLHQDQLKTTTTAVISKDF 60
Query: 61 DQDRMWLNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNF 120
+DR+WLNG+E +G R Q CL+EIR A ++ G + +H+AS NNF
Sbjct: 61 TEDRIWLNGREEDVGQPRLQACLREIRCLARKRRNSRDGDPLPSS--LSCKVHVASVNNF 118
Query: 121 PTXXXXXXXXXXXXCLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKE 180
PT CL ++LA++ + +S LS +AR+GSGSACRSL+GGFV+W +G++
Sbjct: 119 PTAAGLASSAAGYACLAYTLARVYGV---ESDLSEVARRGSGSACRSLYGGFVEWQMGEQ 175
Query: 181 GNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAK 235
+G DS+A Q+ E HW +L ++I VVS+ +K T ST GMR SVETS LL+ RA+
Sbjct: 176 ADGKDSIARQVAPESHWPELRVLILVVSAEKKLTGSTVGMRASVETSPLLRFRAE 230
>pdb|1FI4|A Chain A, The X-Ray Crystal Structure Of Mevalonate 5-Diphosphate
Decarboxylase At 2.3 Angstrom Resolution
Length = 416
Score = 186 bits (471), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 100/227 (44%), Positives = 133/227 (58%), Gaps = 4/227 (1%)
Query: 7 VLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMW 66
V + P NIA +KYWGKRD L LP N SISVTL D L T T+ A +P F++D +W
Sbjct: 23 VYTASVTAPVNIATLKYWGKRDTKLNLPTNSSISVTLSQDDLRTLTSAATAPEFERDTLW 82
Query: 67 LNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTXXXX 126
LNG+ S+ R QNCL+++R + E + + + W+ LHI S NNFPT
Sbjct: 83 LNGEPHSIDNERTQNCLRDLRQLRKEXESKDASLPTLSQ-WK---LHIVSENNFPTAAGL 138
Query: 127 XXXXXXXXCLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDS 186
LV ++AKL L ++ S++S IAR+GSGSACRSLFGG+V W GK +G DS
Sbjct: 139 ASSAAGFAALVSAIAKLYQLPQSTSEISRIARKGSGSACRSLFGGYVAWEXGKAEDGHDS 198
Query: 187 LAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHR 233
AVQ+ D W + VVS +K+ SST G + +V TS L + R
Sbjct: 199 XAVQIADSSDWPQXKACVLVVSDIKKDVSSTQGXQLTVATSELFKER 245
>pdb|2HKE|A Chain A, Mevalonate Diphosphate Decarboxylase From Trypanosoma
Brucei
pdb|2HKE|B Chain B, Mevalonate Diphosphate Decarboxylase From Trypanosoma
Brucei
Length = 380
Score = 155 bits (393), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/227 (40%), Positives = 129/227 (56%), Gaps = 19/227 (8%)
Query: 10 VTAQTPTNIAVIKYWGKRD--ETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWL 67
VT + P NIA IKYWGKR+ ETLILP NDS S+TL + T+V + + D + L
Sbjct: 6 VTVEAPINIAFIKYWGKREGGETLILPTNDSFSITLSASPFRSKTSVELRDDIETDTLRL 65
Query: 68 NGKEISLGG-GRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTXXXX 126
NG E+ +G R Q+ L +RS C E K + +I S NNFPT
Sbjct: 66 NGTEVDVGKTPRVQSMLLHLRS-TCPEELKNKKV------------NIVSENNFPTAAGM 112
Query: 127 XXXXXXXXCLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDS 186
+ A L+ ++ + +S +AR GSGSACRS FGGFV W G++ +GSD
Sbjct: 113 ASSASGYCAMS---AALIRAFKSTTNVSMLARLGSGSACRSAFGGFVIWNKGEKPDGSDC 169
Query: 187 LAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHR 233
+A Q VDE HW ++ ++ AV+ QK+ SST GM++S++TS L++ R
Sbjct: 170 VATQFVDETHWPEIQVMCAVLKGAQKDVSSTKGMQQSLKTSPLMKKR 216
>pdb|4DPW|A Chain A, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Mevalonate Diphosphate And Atpgs
pdb|4DPW|B Chain B, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Mevalonate Diphosphate And Atpgs
pdb|4DPW|C Chain C, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Mevalonate Diphosphate And Atpgs
pdb|4DPW|D Chain D, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Mevalonate Diphosphate And Atpgs
pdb|4DPW|E Chain E, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Mevalonate Diphosphate And Atpgs
pdb|4DPW|F Chain F, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Mevalonate Diphosphate And Atpgs
pdb|4DPW|G Chain G, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Mevalonate Diphosphate And Atpgs
pdb|4DPW|H Chain H, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Mevalonate Diphosphate And Atpgs
pdb|4DU8|A Chain A, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Inhibitor Dpgp
pdb|4DU8|B Chain B, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Inhibitor Dpgp
Length = 332
Score = 114 bits (286), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 117/223 (52%), Gaps = 23/223 (10%)
Query: 12 AQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE 71
A+ TNIA+IKYWGK DET I+P+N+S+SVTL D T T V P F +D + LNG E
Sbjct: 12 ARAHTNIALIKYWGKADETYIIPMNNSLSVTL--DRFYTETKVTFDPDFTEDCLILNGNE 69
Query: 72 ISLG-GGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTXXXXXXXX 130
++ + QN + +R A + +LH I S N PT
Sbjct: 70 VNAKEKEKIQNYMNIVRDLAGN----------------RLHARIESENYVPTAAGLASSA 113
Query: 131 XXXXCLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQ 190
L + + ++L + + LS +AR+GSGSA RS+FGGF +W ++G+ +
Sbjct: 114 SAYAALAAACNEALSLNLSDTDLSRLARRGSGSASRSIFGGFAEW---EKGHDDLTSYAH 170
Query: 191 LVDEEHW-NDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQH 232
++ W DL +I V++++ K+ SS +GM + +TS Q+
Sbjct: 171 GINSNGWEKDLSMIFVVINNQSKKVSSRSGMSLTRDTSRFYQY 213
>pdb|3QT5|A Chain A, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase
pdb|3QT5|B Chain B, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase
pdb|3QT6|A Chain A, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Inhibitor Dpgp
pdb|3QT6|B Chain B, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Inhibitor Dpgp
pdb|3QT7|A Chain A, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Inhibitor
6-Fmvapp
pdb|3QT7|B Chain B, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Inhibitor
6-Fmvapp
pdb|4DPT|A Chain A, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Inhibitor
6-Fmvapp And Atpgs
pdb|4DPT|B Chain B, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Inhibitor
6-Fmvapp And Atpgs
pdb|4DU7|A Chain A, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Substrate
Mevalonate Diphosphate
pdb|4DU7|B Chain B, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Substrate
Mevalonate Diphosphate
Length = 332
Score = 114 bits (286), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 117/223 (52%), Gaps = 23/223 (10%)
Query: 12 AQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE 71
A+ TNIA+IKYWGK DET I+P+N+S+SVTL D T T V P F +D + LNG E
Sbjct: 12 ARAHTNIALIKYWGKADETYIIPMNNSLSVTL--DRFYTETKVTFDPDFTEDCLILNGNE 69
Query: 72 ISLG-GGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTXXXXXXXX 130
++ + QN + +R A + +LH I S N PT
Sbjct: 70 VNAKEKEKIQNYMNIVRDLAGN----------------RLHARIESENYVPTAAGLASSA 113
Query: 131 XXXXCLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQ 190
L + + ++L + + LS +AR+GSGSA RS+FGGF +W ++G+ +
Sbjct: 114 SAYAALAAACNEALSLNLSDTDLSRLARRGSGSASRSIFGGFAEW---EKGHDDLTSYAH 170
Query: 191 LVDEEHW-NDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQH 232
++ W DL +I V++++ K+ SS +GM + +TS Q+
Sbjct: 171 GINSNGWEKDLSMIFVVINNQSKKVSSRSGMSLTRDTSRFYQY 213
>pdb|3QT8|A Chain A, Crystal Structure Of Mutant S192a Staphylococcus
Epidermidis Mevalonate Diphosphate Decarboxylase
Complexed With Inhibitor 6- Fmvapp
pdb|3QT8|B Chain B, Crystal Structure Of Mutant S192a Staphylococcus
Epidermidis Mevalonate Diphosphate Decarboxylase
Complexed With Inhibitor 6- Fmvapp
pdb|4DPU|A Chain A, Crystal Structure Of Staphylococcus Epidermidis S192a
Mevalonate Diphosphate Decarboxylase Complexed With
Inhibitor 6-Fmvapp And Atpgs
pdb|4DPU|B Chain B, Crystal Structure Of Staphylococcus Epidermidis S192a
Mevalonate Diphosphate Decarboxylase Complexed With
Inhibitor 6-Fmvapp And Atpgs
pdb|4DPX|A Chain A, Crystal Structure Of S192a Staphylococcus Epidermidis
Mevalonate Diphosphate Decarboxylase
pdb|4DPX|B Chain B, Crystal Structure Of S192a Staphylococcus Epidermidis
Mevalonate Diphosphate Decarboxylase
pdb|4DPY|A Chain A, Crystal Structure Of Staphylococcus Epidermidis S192a
Mevalonate Diphosphate Decarboxylase Complexed With
Inhibitor Dpgp
pdb|4DPY|B Chain B, Crystal Structure Of Staphylococcus Epidermidis S192a
Mevalonate Diphosphate Decarboxylase Complexed With
Inhibitor Dpgp
Length = 332
Score = 114 bits (284), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 117/223 (52%), Gaps = 23/223 (10%)
Query: 12 AQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE 71
A+ TNIA+IKYWGK DET I+P+N+S+SVTL D T T V P F +D + LNG E
Sbjct: 12 ARAHTNIALIKYWGKADETYIIPMNNSLSVTL--DRFYTETKVTFDPDFTEDCLILNGNE 69
Query: 72 ISLG-GGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTXXXXXXXX 130
++ + QN + +R A + +LH I S N PT
Sbjct: 70 VNAKEKEKIQNYMNIVRDLAGN----------------RLHARIESENYVPTAAGLASSA 113
Query: 131 XXXXCLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQ 190
L + + ++L + + LS +AR+GSGSA RS+FGGF +W ++G+ +
Sbjct: 114 SAYAALAAACNEALSLNLSDTDLSRLARRGSGSASRSIFGGFAEW---EKGHDDLTSYAH 170
Query: 191 LVDEEHW-NDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQH 232
++ W DL +I V++++ K+ S+ +GM + +TS Q+
Sbjct: 171 GINSNGWEKDLSMIFVVINNQSKKVSARSGMSLTRDTSRFYQY 213
>pdb|2HK2|A Chain A, Crystal Structure Of Mevalonate Diphosphate Decarboxylase
From Staphylococcus Aureus (Monoclinic Form)
pdb|2HK2|B Chain B, Crystal Structure Of Mevalonate Diphosphate Decarboxylase
From Staphylococcus Aureus (Monoclinic Form)
pdb|2HK3|A Chain A, Crystal Structure Of Mevalonate Diphosphate Decarboxylase
From Staphylococcus Aureus (Orthorhombic Form)
pdb|2HK3|B Chain B, Crystal Structure Of Mevalonate Diphosphate Decarboxylase
From Staphylococcus Aureus (Orthorhombic Form)
Length = 331
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/221 (35%), Positives = 116/221 (52%), Gaps = 19/221 (8%)
Query: 12 AQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE 71
A+ TNIA+IKYWGK+DE LI+P+N+SISVTL+ T T V + QD+ WLNG++
Sbjct: 11 ARAHTNIALIKYWGKKDEALIIPMNNSISVTLEK--FYTETKVTFNDQLTQDQFWLNGEK 68
Query: 72 ISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTXXXXXXXXX 131
+S G+ L++I S+ D+ GI DW + I S N PT
Sbjct: 69 VS---GK---ELEKI-SKYMDIVRNRAGI-----DW---YAEIESDNFVPTAAGLASSAS 113
Query: 132 XXXCLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQL 191
L + + ++++ + LS +AR GSGSA RS++GGF +W G + S AV L
Sbjct: 114 AYAALAAACNQALDMQLSDKDLSRLARIGSGSASRSIYGGFAEWEKGY--SDETSYAVPL 171
Query: 192 VDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQH 232
+DL +I V++ K+ S GM + TS Q+
Sbjct: 172 ESNHFEDDLAMIFVVINQHSKKVPSRYGMSLTRNTSRFYQY 212
>pdb|3LTO|A Chain A, Crystal Structure Of A Mevalonate Diphosphate
Decarboxylase From Legionella Pneumophila
pdb|3LTO|B Chain B, Crystal Structure Of A Mevalonate Diphosphate
Decarboxylase From Legionella Pneumophila
Length = 323
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 110/247 (44%), Gaps = 37/247 (14%)
Query: 12 AQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE 71
AQ P NIA+IKY GK+DE LP N S+S TL +L ++ + P+ + +W +
Sbjct: 5 AQAPANIALIKYXGKKDENSNLPDNSSLSYTL--SNLLSSVKLEKLPT--KKDIW---EP 57
Query: 72 ISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFP----TXXXXX 127
+++ G N E + R D +++++ I S NNFP
Sbjct: 58 LTIPGAPEFNLSVEAQKRFID-----HLVRLKEYFGYVGGFLIQSSNNFPHSSGLASSAS 112
Query: 128 XXXXXXXCLVFSLAKLMNLK----ENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNG 183
C +L++L + Q+QLS R GSGS+CRS + + W G
Sbjct: 113 SFAALTKCASIALSELTQKPLPSIDEQAQLS---RLGSGSSCRSFYAPWALW------TG 163
Query: 184 SDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQ---HRAKVQFLI 240
A+ L + DL+ + V+SS++KE S + V+TS + RA+ +
Sbjct: 164 DKVSAIDLP----YKDLLHQVIVISSQEKEIPSRVAHK-LVKTSPFYETRSERAEANLKL 218
Query: 241 LSDCLED 247
L + E+
Sbjct: 219 LLNAFEN 225
>pdb|2GS8|A Chain A, Structure Of Mevalonate Pyrophosphate Decarboxylase From
Streptococcus Pyogenes
Length = 317
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Query: 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSP-SFDQDRMWL 67
++T + NIA+IKYWGK ++ +P SIS+TL ++ TTT+V+ P + D+ ++
Sbjct: 8 VITVTSYANIAIIKYWGKENQAKXIPSTSSISLTL--ENXFTTTSVSFLPDTATSDQFYI 65
Query: 68 NG 69
NG
Sbjct: 66 NG 67
>pdb|2GTL|M Chain M, Lumbricus Erythrocruorin At 3.5a Resolution
Length = 217
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 43 LDPDHLCTTTTVAVSPSFDQDRMWL 67
L+PDH T T A SF +R+WL
Sbjct: 115 LNPDHAIVTITAAHRKSFFPNRVWL 139
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,903,203
Number of Sequences: 62578
Number of extensions: 254256
Number of successful extensions: 515
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 484
Number of HSP's gapped (non-prelim): 11
length of query: 254
length of database: 14,973,337
effective HSP length: 97
effective length of query: 157
effective length of database: 8,903,271
effective search space: 1397813547
effective search space used: 1397813547
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)