BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025322
(254 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54YQ9|MVD1_DICDI Diphosphomevalonate decarboxylase OS=Dictyostelium discoideum
GN=mvd PE=3 SV=1
Length = 391
Score = 238 bits (608), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 120/227 (52%), Positives = 158/227 (69%), Gaps = 15/227 (6%)
Query: 10 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNG 69
VT P NIAVIKYWGKRDE +ILP+N S+S TL D L TTTT+ S + +D ++LNG
Sbjct: 6 VTCTAPVNIAVIKYWGKRDENIILPLNSSLSGTLHQDDLKTTTTIVASEDYTEDELYLNG 65
Query: 70 KEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASS 129
K+ + RYQN LK IRSRA + D +K +HIAS NNFPTAAGLASS
Sbjct: 66 KKEDINAVRYQNVLKMIRSRATKLMD------------KKHCVHIASINNFPTAAGLASS 113
Query: 130 AAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAV 189
A+G+ CLVF+LA++ + +S IAR GSGSACRS++GGFVKW +G + +GSDS+AV
Sbjct: 114 ASGYCCLVFTLAQMYGV---DGDISGIARLGSGSACRSMYGGFVKWEMGTKDDGSDSIAV 170
Query: 190 QLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKV 236
Q+ E HW D+ II+ VV+ ++KETSST GM++S TS++++ R V
Sbjct: 171 QVQPESHWPDMNIIVLVVNDKKKETSSTDGMQKSAATSVMMKERCAV 217
>sp|Q99JF5|MVD1_MOUSE Diphosphomevalonate decarboxylase OS=Mus musculus GN=Mvd PE=1 SV=2
Length = 401
Score = 234 bits (596), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 133/236 (56%), Positives = 169/236 (71%), Gaps = 6/236 (2%)
Query: 1 MAAEKWV-LMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPS 59
MA+EK LMVT P NIAVIKYWGKRDE LILP+N S+SVTL D L TTTTVA+S
Sbjct: 1 MASEKPQDLMVTCTAPVNIAVIKYWGKRDEALILPINSSLSVTLHQDQLKTTTTVAISKD 60
Query: 60 FDQDRMWLNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNN 119
F +DR+WLNG+E +G R Q CL+EIR A TE G + K +H+AS NN
Sbjct: 61 FTEDRIWLNGREEDVGQPRLQACLREIRRLARKRRSTEDGDTLPLSLSYK--VHVASVNN 118
Query: 120 FPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGK 179
FPTAAGLASSAAG+ACL ++LA++ + + LS +AR+GSGSACRSL+GGFV+W +G+
Sbjct: 119 FPTAAGLASSAAGYACLAYTLAQVYGV---EGDLSEVARRGSGSACRSLYGGFVEWQMGE 175
Query: 180 EGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAK 235
+ +G DS+A Q+ E HW L I+I VVS+ +K+T ST GM+ SVETS LL+ RA+
Sbjct: 176 QADGKDSIARQIAPEWHWPQLRILILVVSADKKQTGSTVGMQTSVETSTLLKFRAE 231
>sp|P53602|MVD1_HUMAN Diphosphomevalonate decarboxylase OS=Homo sapiens GN=MVD PE=1 SV=1
Length = 400
Score = 231 bits (589), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 126/235 (53%), Positives = 166/235 (70%), Gaps = 5/235 (2%)
Query: 1 MAAEKWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSF 60
MA+EK + VT P NIAVIKYWGKRDE L+LP+N S+SVTL D L TTTT +S F
Sbjct: 1 MASEKPLAAVTCTAPVNIAVIKYWGKRDEELVLPINSSLSVTLHQDQLKTTTTAVISKDF 60
Query: 61 DQDRMWLNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNF 120
+DR+WLNG+E +G R Q CL+EIR A ++ G + +H+AS NNF
Sbjct: 61 TEDRIWLNGREEDVGQPRLQACLREIRCLARKRRNSRDGDPLPSS--LSCKVHVASVNNF 118
Query: 121 PTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKE 180
PTAAGLASSAAG+ACL ++LA++ + +S LS +AR+GSGSACRSL+GGFV+W +G++
Sbjct: 119 PTAAGLASSAAGYACLAYTLARVYGV---ESDLSEVARRGSGSACRSLYGGFVEWQMGEQ 175
Query: 181 GNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAK 235
+G DS+A Q+ E HW +L ++I VVS+ +K T ST GMR SVETS LL+ RA+
Sbjct: 176 ADGKDSIARQVAPESHWPELRVLILVVSAEKKLTGSTVGMRASVETSPLLRFRAE 230
>sp|Q0P570|MVD1_BOVIN Diphosphomevalonate decarboxylase OS=Bos taurus GN=MVD PE=2 SV=1
Length = 400
Score = 229 bits (584), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 126/239 (52%), Positives = 167/239 (69%), Gaps = 13/239 (5%)
Query: 1 MAAEKWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSF 60
MA+EK +++VT P NIAV+KYWGKRDE LILP+N S+SVTL D L TTTT A+S F
Sbjct: 1 MASEKPIVVVTCTAPVNIAVVKYWGKRDEELILPINSSLSVTLHQDQLKTTTTAAISRDF 60
Query: 61 DQDRMWLNGKEISLGGGRYQNCLKEI----RSRACDVEDTEKGIKIEKKDWQKLHLHIAS 116
+DR+WLNG+E +G R Q CL+EI R R D + + + K +H+AS
Sbjct: 61 TEDRIWLNGREEDMGHPRLQACLREIRRLARKRRSDGHEDPLPLSLSYK------VHVAS 114
Query: 117 FNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWI 176
NNFPTAAGLASSAAG+ACL ++LA++ + S LS +AR+GSGSACRSL+GGFV+W
Sbjct: 115 ENNFPTAAGLASSAAGYACLAYTLARVYGV---DSDLSEVARRGSGSACRSLYGGFVEWQ 171
Query: 177 LGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAK 235
+G+ +G DS+A Q+ E HW +L ++I VVS+ +K ST GM+ SVETS LL+ RA+
Sbjct: 172 MGERPDGKDSVACQVAPESHWPELRVLILVVSAERKPMGSTAGMQTSVETSALLKFRAE 230
>sp|Q62967|MVD1_RAT Diphosphomevalonate decarboxylase OS=Rattus norvegicus GN=Mvd PE=2
SV=1
Length = 401
Score = 227 bits (578), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 131/252 (51%), Positives = 173/252 (68%), Gaps = 9/252 (3%)
Query: 1 MAAEKWV-LMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPS 59
MA+EK LMVT P NIAVIKYWGKRDE LILP+N S+SVTL D L TTTT A+S
Sbjct: 1 MASEKPQDLMVTCTAPVNIAVIKYWGKRDEALILPINPSLSVTLHQDQLKTTTTAAISKD 60
Query: 60 FDQDRMWLNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNN 119
F +DR+WLNG+E +G R Q CL+EIR A T G + K +H+AS NN
Sbjct: 61 FTEDRIWLNGREEDVGQPRLQACLREIRRLARKRRSTGDGDALPLSLGYK--VHVASVNN 118
Query: 120 FPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGK 179
FPTAAGLASSAAG+ACL ++LA++ + + LS +AR+GSGSACRSL+GGFV+W +G+
Sbjct: 119 FPTAAGLASSAAGYACLAYTLARVYGV---EGDLSEVARRGSGSACRSLYGGFVEWQMGE 175
Query: 180 EGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKVQFL 239
+ +G DS+A Q+ E HW L ++I VVS+ +K T ST GM+ SV TS LL+ RA+
Sbjct: 176 QADGKDSIARQIAPEWHWPQLRVLILVVSAEKKPTGSTVGMQTSVATSTLLKFRAES--- 232
Query: 240 ILSDCLEDIGSC 251
I+ + ++++ C
Sbjct: 233 IVPERMKEMTRC 244
>sp|Q5U403|MVD1_DANRE Diphosphomevalonate decarboxylase OS=Danio rerio GN=mvd PE=2 SV=1
Length = 400
Score = 227 bits (578), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 129/227 (56%), Positives = 164/227 (72%), Gaps = 10/227 (4%)
Query: 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLN 68
MVT P NIAVIKYWGKRDE LILPVN S+SVTL DHL TTTT+A S SF +D +WLN
Sbjct: 11 MVTCTAPVNIAVIKYWGKRDEDLILPVNASLSVTLHQDHLRTTTTIACSRSFHKDCIWLN 70
Query: 69 GKEISLGGGRYQNCLKEIRSRACDVEDT-EKGIKIEKKDWQKLHLHIASFNNFPTAAGLA 127
GKE + R Q+CL EIR A ++T + + K +HI S NNFPTAAGLA
Sbjct: 71 GKEQDISHPRLQSCLLEIRRLAQRRKNTGDPASDVSNK------VHICSVNNFPTAAGLA 124
Query: 128 SSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSL 187
SSAAG+ACLV++L++L N+ + +LS +ARQGSGSACRSL+GGFV+W LG++ +G DS+
Sbjct: 125 SSAAGYACLVYTLSQLFNV---EGELSGVARQGSGSACRSLYGGFVQWKLGEQSDGKDSI 181
Query: 188 AVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRA 234
A Q+ E +W +L ++I VVS+ QK ST+GM SVETS LL++RA
Sbjct: 182 AEQVASELYWPELRVLILVVSAEQKSVGSTSGMHTSVETSHLLKYRA 228
>sp|Q751D8|MVD1_ASHGO Diphosphomevalonate decarboxylase OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=MVD1
PE=3 SV=2
Length = 397
Score = 213 bits (542), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 116/230 (50%), Positives = 155/230 (67%), Gaps = 10/230 (4%)
Query: 7 VLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMW 66
+ + + P NIA +KYWGKRD L LP N SISVTL + L T T+ A P +DR+W
Sbjct: 3 IYVASTTAPVNIATLKYWGKRDSMLNLPTNSSISVTLSQEDLRTLTSAATGPELAEDRLW 62
Query: 67 LNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKL---HLHIASFNNFPTA 123
LNGK SLG R Q CL ++R+ + ++ E+ D ++ LHI S NNFPTA
Sbjct: 63 LNGKPESLGNARTQQCLADLRA-------LRRALETEEPDLPRMSEWKLHIVSENNFPTA 115
Query: 124 AGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNG 183
AGLASSAAGFA LV ++AKL L ++ S++S IAR+GSGSACRSL+GG+V W +G E +G
Sbjct: 116 AGLASSAAGFAALVVAVAKLYGLPQDYSEISKIARKGSGSACRSLYGGYVAWEMGAEADG 175
Query: 184 SDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHR 233
SDS AVQ+ D EHW ++ I VVS+ +K+T ST+GM+++V TS L + R
Sbjct: 176 SDSRAVQIADVEHWPEMRAAILVVSADRKDTPSTSGMQQTVHTSDLFKER 225
>sp|Q6BY07|MVD1_DEBHA Diphosphomevalonate decarboxylase OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=MVD1 PE=3 SV=2
Length = 388
Score = 205 bits (522), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 118/229 (51%), Positives = 153/229 (66%), Gaps = 4/229 (1%)
Query: 7 VLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMW 66
V +A P NIA +KYWGKRD++L LP N SISVTL + L T T+VA S F +D++W
Sbjct: 3 VYTSSATAPVNIATLKYWGKRDKSLNLPTNSSISVTLSQNDLRTLTSVAASEDFKEDKLW 62
Query: 67 LNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGL 126
LNGK SL R + CL ++R+ ++E + I + +HI S NNFPTAAGL
Sbjct: 63 LNGKLESLESERTKACLADLRTLRKELESNDSSIP----KLSQFGVHIVSENNFPTAAGL 118
Query: 127 ASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDS 186
ASSAAGFA LV S+AKL L +N S++S IAR+GSGSACRSLFGG+V W +G+E NG DS
Sbjct: 119 ASSAAGFAALVVSIAKLYELPQNMSEISKIARKGSGSACRSLFGGYVAWEMGQETNGEDS 178
Query: 187 LAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAK 235
AV++ HW ++ I VVS +K+T ST+GM+ +V TS L Q R K
Sbjct: 179 KAVEVAPLSHWPNMKAAILVVSDDKKDTPSTSGMQTTVATSDLFQWRIK 227
>sp|P32377|MVD1_YEAST Diphosphomevalonate decarboxylase OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=MVD1 PE=1 SV=2
Length = 396
Score = 199 bits (507), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 113/227 (49%), Positives = 150/227 (66%), Gaps = 4/227 (1%)
Query: 7 VLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMW 66
V + P NIA +KYWGKRD L LP N SISVTL D L T T+ A +P F++D +W
Sbjct: 3 VYTASVTAPVNIATLKYWGKRDTKLNLPTNSSISVTLSQDDLRTLTSAATAPEFERDTLW 62
Query: 67 LNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGL 126
LNG+ S+ R QNCL+++R ++E + + + W+ LHI S NNFPTAAGL
Sbjct: 63 LNGEPHSIDNERTQNCLRDLRQLRKEMESKDASLPTLSQ-WK---LHIVSENNFPTAAGL 118
Query: 127 ASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDS 186
ASSAAGFA LV ++AKL L ++ S++S IAR+GSGSACRSLFGG+V W +GK +G DS
Sbjct: 119 ASSAAGFAALVSAIAKLYQLPQSTSEISRIARKGSGSACRSLFGGYVAWEMGKAEDGHDS 178
Query: 187 LAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHR 233
+AVQ+ D W + + VVS +K+ SST GM+ +V TS L + R
Sbjct: 179 MAVQIADSSDWPQMKACVLVVSDIKKDVSSTQGMQLTVATSELFKER 225
>sp|O13963|MVD1_SCHPO Diphosphomevalonate decarboxylase OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=mvd1 PE=3 SV=1
Length = 393
Score = 191 bits (486), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 115/234 (49%), Positives = 149/234 (63%), Gaps = 11/234 (4%)
Query: 4 EKWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQD 63
+K V T P NIAVIKYWGKRD L LP N SISVTL D L T TT + S F+ D
Sbjct: 2 DKKVYQCTVSAPVNIAVIKYWGKRDVALNLPTNSSISVTLSQDDLRTVTTASCSEKFEND 61
Query: 64 RMWLNGK-EISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQK---LHLHIASFNN 119
+WLNG E R + C++E+R D+E+ E D K L LH+ S NN
Sbjct: 62 TLWLNGNAEEIFANKRLRVCVEELRKARLDLEE-------ENDDLDKIGALKLHVVSENN 114
Query: 120 FPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGK 179
FPTAAGLASSAAG+A ++A+L +L +QLS IARQGSGSACRSLFGG+V W +G+
Sbjct: 115 FPTAAGLASSAAGYAAFCEAIARLYDLPWTPTQLSRIARQGSGSACRSLFGGYVAWEMGE 174
Query: 180 EGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHR 233
+G+DS+AVQ+ E+W ++ + + V S+ +K SST GM+ +V +S L QHR
Sbjct: 175 LHSGADSVAVQVEPVENWPEIRVAVLVASAAKKGVSSTAGMQATVASSTLFQHR 228
>sp|Q8R765|ISPE_THETN 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
OS=Thermoanaerobacter tengcongensis (strain DSM 15242 /
JCM 11007 / NBRC 100824 / MB4) GN=ispE PE=3 SV=1
Length = 287
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%)
Query: 112 LHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGG 171
+ I F N P AAGLA +A A + +L KL NL + ++ IA + L GG
Sbjct: 83 IKIKLFKNIPLAAGLAGGSADAAATIVALDKLWNLNLTEKEMEEIASEVGSDVPFCLKGG 142
>sp|B2TIX0|CH60_CLOBB 60 kDa chaperonin OS=Clostridium botulinum (strain Eklund 17B /
Type B) GN=groL PE=3 SV=1
Length = 540
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 24/42 (57%)
Query: 75 GGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIAS 116
GG Y N +KE+ DV+DTE GIKI K ++ IAS
Sbjct: 413 GGTAYINVIKEVEKLTSDVQDTELGIKIIVKSLEEPLRQIAS 454
>sp|Q8U0F3|KIME_PYRFU Mevalonate kinase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM
3638 / JCM 8422 / Vc1) GN=mvk PE=3 SV=1
Length = 334
Score = 34.3 bits (77), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 9/87 (10%)
Query: 102 IEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIAR--- 158
+E+ D + + + ++ + P AGL SSAA + +++KL+ L+ ++ +++ +
Sbjct: 91 LEEADKKNVGIKVSITSQIPVGAGLGSSAAVAVATIGAVSKLLGLELSKEEIAKMGHKTE 150
Query: 159 ---QGSGSACR---SLFGGFVKWILGK 179
QG+ S S GGF+ + GK
Sbjct: 151 LLVQGASSGIDPTVSAIGGFIFYEKGK 177
>sp|A4XLL8|ISPE_CALS8 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
OS=Caldicellulosiruptor saccharolyticus (strain ATCC
43494 / DSM 8903) GN=ispE PE=3 SV=1
Length = 290
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 105 KDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSA 164
K+ K+H+ N P +AGLA + A ++ L KL L +Q++L + R+
Sbjct: 80 KEGVKIHIQ----KNIPISAGLAGGSTDAAAVLRGLNKLFGLNLSQNELIELGREIGADV 135
Query: 165 CRSLFGG 171
L GG
Sbjct: 136 PFCLVGG 142
>sp|P0CV94|NES1_FRAAN (3S,6E)-nerolidol synthase 1 OS=Fragaria ananassa PE=1 SV=1
Length = 519
Score = 32.7 bits (73), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 77 GRYQNCLKEIRSRACDVEDT-EKGIKIEKKDWQKLHLHIASFNNFPTAAGLAS 128
G Y C E C +E+ EK I + +W+KL+ + S N FP + LAS
Sbjct: 432 GSYVRCYLE-EHEGCSIEEAREKTINMISDEWKKLNRELLSPNPFPASFTLAS 483
>sp|A6TKS7|KHSE_ALKMQ Homoserine kinase OS=Alkaliphilus metalliredigens (strain QYMF)
GN=thrB PE=3 SV=1
Length = 298
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 107 WQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSG---S 163
+Q L I +N P A GL SSAA V + K+ +Q ++ IA + G +
Sbjct: 72 YQPSGLRIKQYNGIPVARGLGSSAACIVGGVLAANKMCGSPLSQDEMLEIAVEVEGHPDN 131
Query: 164 ACRSLFGGFV 173
+L GG V
Sbjct: 132 VAPALLGGVV 141
>sp|P0CV95|NES2_FRAAN (3S,6E)-nerolidol synthase 2, chloroplastic/mitochondrial
OS=Fragaria ananassa PE=1 SV=1
Length = 578
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 77 GRYQNCLKEIRSRACDVEDT-EKGIKIEKKDWQKLHLHIASFNNFPTAAGLAS 128
G Y C E C +E+ EK I + +W+KL+ + S N FP LAS
Sbjct: 491 GSYVRCYLE-EHEGCSIEEAREKTINMISDEWKKLNRELLSPNPFPATITLAS 542
>sp|O59291|KIME_PYRHO Mevalonate kinase OS=Pyrococcus horikoshii (strain ATCC 700860 /
DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=mvk PE=3
SV=1
Length = 335
Score = 32.3 bits (72), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 71/153 (46%), Gaps = 26/153 (16%)
Query: 36 NDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIRSRACDVED 95
NDS ++ ++ + T + SF +D+++ G+ L +R +E
Sbjct: 43 NDSGNIKIEAHDIKTPGLIV---SFSEDKIYFETDY-----GKAAEVLSYVR---YAIE- 90
Query: 96 TEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSA 155
+ +E+ D +++ + ++ + P AGL SSAA + ++++L+ L+ ++ +++
Sbjct: 91 ----LALEESD-KRVGIDVSITSQIPVGAGLGSSAAVAVATIGAVSRLLGLELSKEEIAK 145
Query: 156 IAR------QGSGSACR---SLFGGFVKWILGK 179
+ QG+ S S GGF+ + GK
Sbjct: 146 LGHKVELLVQGASSGIDPTVSAVGGFLYYKQGK 178
>sp|A3DI26|ISPE_CLOTH 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase OS=Clostridium
thermocellum (strain ATCC 27405 / DSM 1237) GN=ispE PE=3
SV=1
Length = 283
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 114 IASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQ 159
I P AAGLA +A A ++ + +L NL ++++L I +Q
Sbjct: 87 IKILKRIPVAAGLAGGSADAAAVIKGMNELFNLNADEAELMDIGKQ 132
>sp|B9MJX8|ISPE_CALBD 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
OS=Caldicellulosiruptor bescii (strain ATCC BAA-1888 /
DSM 6725 / Z-1320) GN=ispE PE=3 SV=1
Length = 286
Score = 32.0 bits (71), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 108 QKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRS 167
Q + +HI N P +AGLA + A ++ L ++ L ++ QL I R+
Sbjct: 81 QGVRIHIEK--NIPVSAGLAGGSTDAAAVLKGLNEIFELNLSEQQLMEIGREIGADVPFC 138
Query: 168 LFGG 171
L GG
Sbjct: 139 LVGG 142
>sp|B2UZ02|CH60_CLOBA 60 kDa chaperonin OS=Clostridium botulinum (strain Alaska E43 /
Type E3) GN=groL PE=3 SV=1
Length = 540
Score = 31.6 bits (70), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 75 GGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIAS 116
GG Y N + + DV+DTE GIKI K ++ IAS
Sbjct: 413 GGTAYINVINAVEKLTSDVQDTELGIKIIVKSLEEPLRQIAS 454
>sp|Q5ZJL7|DDB2_CHICK DNA damage-binding protein 2 OS=Gallus gallus GN=DDB2 PE=2 SV=1
Length = 507
Score = 31.2 bits (69), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 114 IASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGG 171
I S N F +S GF L++S +++ +K+ + L A+ QG GS S GG
Sbjct: 415 IISLNKFNPMGDTLASGMGFNILIWSREEMV-MKKQEHLLKAMTEQGIGSRSLSRRGG 471
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,301,160
Number of Sequences: 539616
Number of extensions: 3459157
Number of successful extensions: 8267
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 8232
Number of HSP's gapped (non-prelim): 34
length of query: 254
length of database: 191,569,459
effective HSP length: 115
effective length of query: 139
effective length of database: 129,513,619
effective search space: 18002393041
effective search space used: 18002393041
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)