Query 025322
Match_columns 254
No_of_seqs 159 out of 935
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 04:41:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025322.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025322hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2833 Mevalonate pyrophospha 100.0 1.8E-61 3.9E-66 438.0 22.5 243 4-250 2-245 (395)
2 PLN02407 diphosphomevalonate d 100.0 5.7E-61 1.2E-65 444.4 25.1 244 7-250 1-246 (343)
3 TIGR01240 mevDPdecarb diphosph 100.0 4.5E-54 9.8E-59 395.7 22.3 220 10-249 1-221 (305)
4 COG3407 MVD1 Mevalonate pyroph 100.0 2E-52 4.3E-57 385.0 20.0 221 9-250 5-226 (329)
5 COG0083 ThrB Homoserine kinase 99.9 5.6E-25 1.2E-29 201.4 20.0 173 8-224 2-181 (299)
6 PTZ00299 homoserine kinase; Pr 99.9 6.5E-23 1.4E-27 191.4 17.8 176 8-223 6-192 (336)
7 TIGR00191 thrB homoserine kina 99.9 3.7E-22 8E-27 183.0 19.5 171 10-221 1-183 (302)
8 PRK01212 homoserine kinase; Pr 99.9 1.1E-21 2.3E-26 179.2 19.7 174 8-222 2-184 (301)
9 PLN02451 homoserine kinase 99.8 7.7E-20 1.7E-24 172.7 17.8 142 7-176 51-207 (370)
10 PRK00128 ipk 4-diphosphocytidy 99.8 9.9E-18 2.2E-22 152.2 18.8 177 9-221 2-182 (286)
11 PRK14611 4-diphosphocytidyl-2- 99.8 1.4E-17 2.9E-22 151.2 19.6 176 10-222 4-179 (275)
12 PRK03188 4-diphosphocytidyl-2- 99.8 8.5E-18 1.8E-22 153.8 18.2 174 11-221 4-181 (300)
13 PRK03926 mevalonate kinase; Pr 99.8 4E-17 8.7E-22 149.0 19.9 140 9-176 1-149 (302)
14 PRK02534 4-diphosphocytidyl-2- 99.8 7.6E-17 1.7E-21 148.5 19.5 179 9-221 3-185 (312)
15 PTZ00298 mevalonate kinase; Pr 99.7 7.4E-17 1.6E-21 149.7 17.2 182 8-221 9-203 (328)
16 PRK14608 4-diphosphocytidyl-2- 99.7 5.4E-16 1.2E-20 142.0 21.0 177 11-222 8-189 (290)
17 COG1685 Archaeal shikimate kin 99.7 1.2E-16 2.7E-21 143.4 15.6 186 9-239 2-198 (278)
18 TIGR00144 beta_RFAP_syn beta-R 99.7 3.8E-16 8.1E-21 145.2 19.4 154 35-216 23-196 (324)
19 PRK14615 4-diphosphocytidyl-2- 99.7 5.5E-16 1.2E-20 142.3 20.1 182 9-222 6-188 (296)
20 PRK14612 4-diphosphocytidyl-2- 99.7 2.9E-16 6.4E-21 142.4 17.7 174 10-222 3-178 (276)
21 PRK14616 4-diphosphocytidyl-2- 99.7 5E-16 1.1E-20 141.6 18.8 176 10-221 4-182 (287)
22 PRK01123 shikimate kinase; Pro 99.7 4.9E-16 1.1E-20 141.5 18.1 115 40-177 24-152 (282)
23 PRK00650 4-diphosphocytidyl-2- 99.7 4.4E-16 9.6E-21 142.7 17.7 174 13-222 4-179 (288)
24 COG1577 ERG12 Mevalonate kinas 99.7 9.3E-16 2E-20 141.6 18.1 142 11-178 2-159 (307)
25 TIGR00154 ispE 4-diphosphocyti 99.7 3.3E-15 7.2E-20 136.9 20.9 181 12-222 4-185 (293)
26 PRK14614 4-diphosphocytidyl-2- 99.7 3.5E-15 7.6E-20 135.8 20.1 179 10-222 4-184 (280)
27 PRK00343 ipk 4-diphosphocytidy 99.7 5.2E-15 1.1E-19 134.4 19.8 177 9-222 6-185 (271)
28 PRK14609 4-diphosphocytidyl-2- 99.6 2.2E-14 4.7E-19 130.2 20.4 175 14-223 7-183 (269)
29 TIGR00549 mevalon_kin mevalona 99.6 2.8E-14 6.1E-19 128.1 20.2 170 14-221 1-184 (273)
30 TIGR01220 Pmev_kin_Gr_pos phos 99.6 5.2E-14 1.1E-18 132.4 21.4 212 11-249 2-266 (358)
31 PRK14610 4-diphosphocytidyl-2- 99.6 1.6E-14 3.4E-19 132.0 17.3 180 9-223 3-184 (283)
32 TIGR01920 Shik_kin_archae shik 99.6 1.6E-14 3.5E-19 130.5 16.6 113 40-177 18-141 (261)
33 PRK04181 4-diphosphocytidyl-2- 99.6 9.5E-14 2.1E-18 125.5 18.1 179 13-223 4-186 (257)
34 COG1947 IspE 4-diphosphocytidy 99.6 1.2E-13 2.6E-18 126.4 17.9 176 10-221 4-183 (289)
35 PRK05905 hypothetical protein; 99.5 3.5E-13 7.5E-18 122.0 18.0 174 14-223 7-185 (258)
36 PRK14613 4-diphosphocytidyl-2- 99.5 1.1E-12 2.4E-17 120.7 17.8 170 16-222 7-190 (297)
37 PLN02677 mevalonate kinase 99.5 3.9E-12 8.4E-17 121.1 20.3 219 9-250 2-281 (387)
38 PRK03817 galactokinase; Provis 99.4 7.8E-12 1.7E-16 117.0 19.0 126 10-163 1-138 (351)
39 PRK05101 galactokinase; Provis 99.4 7.4E-12 1.6E-16 118.8 18.1 136 9-172 20-183 (382)
40 PRK00555 galactokinase; Provis 99.4 1.3E-11 2.9E-16 116.4 19.6 135 10-172 3-162 (363)
41 TIGR00131 gal_kin galactokinas 99.4 8E-12 1.7E-16 118.4 18.1 137 9-172 17-181 (386)
42 PRK05322 galactokinase; Provis 99.4 3.2E-11 6.8E-16 114.8 19.7 136 10-172 20-183 (387)
43 COG1829 Predicted archaeal kin 99.4 2.7E-11 5.9E-16 109.5 17.3 161 10-212 3-172 (283)
44 PLN02521 galactokinase 99.3 8.4E-11 1.8E-15 115.3 20.1 143 10-176 49-225 (497)
45 PF00288 GHMP_kinases_N: GHMP 99.3 1.7E-12 3.7E-17 93.7 5.4 59 113-171 1-67 (67)
46 KOG1511 Mevalonate kinase MVK/ 99.2 1.5E-09 3.2E-14 101.2 17.9 188 10-223 5-249 (397)
47 COG0153 GalK Galactokinase [Ca 99.0 1.2E-08 2.6E-13 96.6 17.1 189 9-245 23-242 (390)
48 COG4542 PduX Protein involved 99.0 3.6E-09 7.8E-14 95.0 11.8 159 6-210 10-171 (293)
49 PRK13412 fkp bifunctional fuco 99.0 1.1E-08 2.3E-13 106.8 14.6 138 110-249 725-876 (974)
50 TIGR01219 Pmev_kin_ERG8 phosph 98.9 1.2E-07 2.6E-12 92.1 18.9 115 123-247 152-312 (454)
51 COG1907 Predicted archaeal sug 98.9 1.1E-07 2.4E-12 87.0 17.0 164 9-210 1-173 (312)
52 PLN02865 galactokinase 98.8 7.1E-07 1.5E-11 86.2 20.2 144 10-178 31-211 (423)
53 COG2605 Predicted kinase relat 98.7 9.8E-07 2.1E-11 81.0 16.0 186 9-221 1-207 (333)
54 PTZ00290 galactokinase; Provis 98.3 6.2E-05 1.3E-09 73.7 19.7 117 10-145 38-168 (468)
55 KOG1537 Homoserine kinase [Ami 98.3 1.2E-06 2.6E-11 79.5 5.1 104 110-223 93-231 (355)
56 COG3890 ERG8 Phosphomevalonate 95.7 0.042 9E-07 50.7 7.6 62 113-174 94-171 (337)
57 KOG4644 L-fucose kinase [Carbo 94.3 0.23 5.1E-06 49.5 8.9 65 110-174 690-767 (948)
58 KOG0631 Galactokinase [Carbohy 86.4 1 2.2E-05 44.4 4.6 49 110-158 141-192 (489)
59 KOG4519 Phosphomevalonate kina 75.0 4.2 9E-05 38.8 4.2 51 123-173 152-225 (459)
60 TIGR00162 conserved hypothetic 34.1 55 0.0012 28.3 3.8 33 130-162 127-159 (188)
61 TIGR00161 conserved hypothetic 27.4 80 0.0017 28.2 3.8 30 132-161 185-214 (238)
62 PF11873 DUF3393: Domain of un 27.1 1.3E+02 0.0028 26.6 5.0 33 22-58 64-96 (204)
63 PF06857 ACP: Malonate decarbo 25.0 2.6E+02 0.0056 21.3 5.7 48 42-92 10-57 (87)
64 CHL00079 rps9 ribosomal protei 24.7 3.3E+02 0.0072 22.3 6.7 23 50-74 14-36 (130)
65 COG1938 Archaeal enzymes of AT 23.8 1E+02 0.0022 28.1 3.7 29 132-160 188-216 (244)
66 PF00382 TFIIB: Transcription 22.9 1.1E+02 0.0025 21.4 3.3 36 120-158 30-65 (71)
67 PRK00474 rps9p 30S ribosomal p 22.1 4.5E+02 0.0097 21.6 7.9 23 50-74 14-36 (134)
68 PTZ00086 40S ribosomal protein 21.1 5E+02 0.011 21.7 8.8 81 50-149 20-102 (147)
No 1
>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]
Probab=100.00 E-value=1.8e-61 Score=437.96 Aligned_cols=243 Identities=60% Similarity=0.904 Sum_probs=226.5
Q ss_pred ccceeEEEEEccceeeeeeccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCeeccCCcchHHHHH
Q 025322 4 EKWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCL 83 (254)
Q Consensus 4 ~~~~~~~~a~ap~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~~~~~~~~~~~vl 83 (254)
++|+.++++++|.|||+||||||||+.+|+|.|||||+||++.+|+|.|++..+++.+.|++|+||++++..+.|...|+
T Consensus 2 ~k~~~~~t~taPvNIAvIKYWGKRD~~l~LP~N~SISvTL~~D~L~t~Tt~~~s~~fe~dr~wLNGk~~~i~~~R~q~cl 81 (395)
T KOG2833|consen 2 DKPVAEVTATAPVNIAVIKYWGKRDEELNLPTNDSISVTLSQDDLCTLTTAVVSPSFEEDRMWLNGKEVPISNKRYQRCL 81 (395)
T ss_pred CCcceeEEeeccceeeeeeeccccchhhcCCcCCceeEEeccccceeeeeEeeccccccceeEECCceeccccHHHHHHH
Confidence 68999999999999999999999999999999999999998889999999999988888999999999888778999999
Q ss_pred HHHHHHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCC
Q 025322 84 KEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGS 163 (254)
Q Consensus 84 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~~Gs 163 (254)
+.+|++.+..++.+. ++|+. ...+++|.+.||||+++||+||||+++|+++|++++++++++++|++.+||+||||
T Consensus 82 ~e~r~~~~d~~~~~~--~~~~~--~~~~lHI~S~nNFPtAAGLASSAAG~Aalv~alarly~l~~~~~els~iAR~GSGS 157 (395)
T KOG2833|consen 82 REIRRLARDREESEA--SLPSN--GPLKLHIASVNNFPTAAGLASSAAGFAALVLALARLYGLDDSPEELSRIARQGSGS 157 (395)
T ss_pred HHHHHHhhhhhhhhc--ccCcC--CCeeEEEEecCCCcchhhhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHhccCch
Confidence 999999877543332 44432 24589999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCceeeeccccCCCCCeeEEEcccCCCCCceeEEEEEEcCCCcccCcHHHHHhHhhcCccHHHHHHH-HHhhHH
Q 025322 164 ACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKV-QFLILS 242 (254)
Q Consensus 164 a~~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~vv~v~~~~~k~vsS~~gm~~~v~ts~~~~~r~~~-~~~~~~ 242 (254)
||||+|||||.|..|...||.|+.++++.+..|||+|+++++|++..+|+++||+||+++++||++|+.|++. ..+..+
T Consensus 158 ACRSl~GG~V~W~mG~~~DGsDsvAvq~~p~~~W~el~ililVvs~~~K~t~ST~GM~~sveTS~L~qhRi~~vVP~Ri~ 237 (395)
T KOG2833|consen 158 ACRSLYGGFVAWEMGELDDGSDSVAVQIAPSSHWPELRILILVVSDAKKKTGSTEGMRRSVETSQLLQHRIESVVPQRIQ 237 (395)
T ss_pred hhhhhhcceeEeecccccCCCceeEEEeccccCCCceEEEEEEeccccccccccHHHHHHHHHhHHHHHHHHhhhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 889999
Q ss_pred HHHHhhcc
Q 025322 243 DCLEDIGS 250 (254)
Q Consensus 243 ~~~e~~~~ 250 (254)
.++|+|.+
T Consensus 238 ~m~eaI~~ 245 (395)
T KOG2833|consen 238 QMREAIRE 245 (395)
T ss_pred HHHHHHHh
Confidence 99999965
No 2
>PLN02407 diphosphomevalonate decarboxylase
Probab=100.00 E-value=5.7e-61 Score=444.40 Aligned_cols=244 Identities=81% Similarity=1.207 Sum_probs=218.0
Q ss_pred eeEEEEEccceeeeeeccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCeeccCCcchHHHHHHHH
Q 025322 7 VLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEI 86 (254)
Q Consensus 7 ~~~~~a~ap~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~~~~~~~~~~~vl~~~ 86 (254)
+++++|+||+||||||||||+|+.+|+|.|+|||+||+++++||+|+|+++++.+.|+++|||++.+....|+.++++.+
T Consensus 1 ~~~~ta~A~~NIALIKYWGKrD~~l~LP~nsSiSlTL~~~~~~T~Ttv~~~~~~~~D~~~LNG~~~~~~~~rv~~~l~~~ 80 (343)
T PLN02407 1 VVMVTAQAPTNIAVIKYWGKRDEKLILPINSSISVTLDPDHLCATTTVAVSPSFDQDRLWLNGKEISLSGGRYQNCLREI 80 (343)
T ss_pred CeEEEEEecceeeeehhcccccccccCCCCCeeEEEccCCcceeeEEEEECCCCCCCEEEECCEecCcccHHHHHHHHHH
Confidence 36799999999999999999999999999999999999878999999999877667999999997765456999999999
Q ss_pred HHHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCC-HHHHHHHHHhccCCch
Q 025322 87 RSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKEN-QSQLSAIARQGSGSAC 165 (254)
Q Consensus 87 r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~-~~el~~iA~~~~Gsa~ 165 (254)
|+.++.......+..|++..+...+++|+++|+||+++|||||||+++|++.|++++++++++ .++++.+||+||||+|
T Consensus 81 r~~~~~~~~~~~~~~i~~~~~~~~~~~I~S~N~~PtaaGLaSSAs~~aAl~~al~~~~~~~~~~~~~ls~lAr~GSGSa~ 160 (343)
T PLN02407 81 RARATDVEDEEKGIKITKKDWEKLHVHIASYNNFPTAAGLASSAAGFACLVFALAKLMNVKEDFPGELSAIARQGSGSAC 160 (343)
T ss_pred HHHhcccccccccccccccccccccEEEEeccCCccccchHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHhccChHHH
Confidence 998776433333333322112233689999999999999999999999999999999999999 9999999999999999
Q ss_pred hhhccCceeeeccccCCCCCeeEEEcccCCCCCceeEEEEEEcCCCcccCcHHHHHhHhhcCccHHHHHHH-HHhhHHHH
Q 025322 166 RSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKV-QFLILSDC 244 (254)
Q Consensus 166 ~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~vv~v~~~~~k~vsS~~gm~~~v~ts~~~~~r~~~-~~~~~~~~ 244 (254)
||+||||+.|..+...++.+++++++.++.+||+|+++++|++.++|+||||+||+++++|||||+.|++. .++++.++
T Consensus 161 rS~~Gg~v~w~~G~~~d~~ds~A~~i~~~~~~~dl~~~i~vv~~~~K~vsSt~GM~~tv~TSp~~~~w~~~~~~~~~~~~ 240 (343)
T PLN02407 161 RSLYGGFVKWNMGKKEDGSDSIAVQLADEKHWDDLVIIIAVVSSRQKETSSTSGMRESVETSPLLQHRAKEVVPKRILQM 240 (343)
T ss_pred HHhhCCeEEecCCCCCCCCceeEEECCCccCCccceEEEEEEcCCcCCCCchHHHHHhhhcChhHHHHHHhhhHHHHHHH
Confidence 99999999999997778899999999877789999999999999999999999999999999999999998 89999999
Q ss_pred HHhhcc
Q 025322 245 LEDIGS 250 (254)
Q Consensus 245 ~e~~~~ 250 (254)
+++|..
T Consensus 241 ~~Ai~~ 246 (343)
T PLN02407 241 EEAIKN 246 (343)
T ss_pred HHHHHh
Confidence 999954
No 3
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase. Alternate names: mevalonate diphosphate decarboxylase; pyrophosphomevalonate decarboxylase
Probab=100.00 E-value=4.5e-54 Score=395.75 Aligned_cols=220 Identities=45% Similarity=0.666 Sum_probs=202.6
Q ss_pred EEEEccceeeeeeccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCeecc-CCcchHHHHHHHHHH
Q 025322 10 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEIS-LGGGRYQNCLKEIRS 88 (254)
Q Consensus 10 ~~a~ap~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~~~-~~~~~~~~vl~~~r~ 88 (254)
+||+||+||||||||||+|+++|+|.|+|||+||| .++|+|+|+.+++...|++++||+... ...+++..+++.+++
T Consensus 1 ~t~~a~~NIAliKYwGk~d~~~~lP~n~SisltLd--~~~T~ttv~~~~~~~~d~~~lnG~~~~~~~~~~v~~~l~~~~~ 78 (305)
T TIGR01240 1 ASVTAYVNIATIKYWGKRNTKLNLPTNSSISLTLS--QLRTLTSVAFADEFERDTFYLNGTLQHSIDNEKTSNCLDDFRQ 78 (305)
T ss_pred CceeccchhHHhhhcccccccccCCCCCeeEEEcC--CCccEEEEEECCCCCcceEEECCcCCCCcchHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999 599999999987666689999997543 345688899999998
Q ss_pred HccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCCchhhh
Q 025322 89 RACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSL 168 (254)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~~Gsa~~s~ 168 (254)
.++. ..+++|+++|+||+++|||||||+++|++.|++++++++++.++++++|++++|++|||+
T Consensus 79 ~~~~----------------~~~v~I~~~n~iP~~aGLgSSAA~~aA~~~Al~~l~~l~l~~~eL~~lA~~gsGsa~~s~ 142 (305)
T TIGR01240 79 LRKE----------------QEKLHIVSQNNFPTAAGLASSASGLAALVSACAKLYQLPLDTSELSRIARKGSGSACRSL 142 (305)
T ss_pred hcCC----------------CCceEEEEecCCCCCCccchHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCeeeee
Confidence 8764 357999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCceeeeccccCCCCCeeEEEcccCCCCCceeEEEEEEcCCCcccCcHHHHHhHhhcCccHHHHHHHHHhhHHHHHHhh
Q 025322 169 FGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKVQFLILSDCLEDI 248 (254)
Q Consensus 169 ~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~vv~v~~~~~k~vsS~~gm~~~v~ts~~~~~r~~~~~~~~~~~~e~~ 248 (254)
+||++.|..+. ++.++++++++.+.+||+|++++++++..+|+||||+||+.++.|||+|+.|++...++++.++++|
T Consensus 143 ~GG~v~~~~g~--~~~~s~a~~i~~~~~~~~~~~~v~vv~~~~k~vsSt~gm~~~~~ts~~~~~~v~~~~~~l~~~~~ai 220 (305)
T TIGR01240 143 FGGYVAWEKGK--DDHSSAAVQVADDSDWPQXAMCVLVVNDIKKDVSSRQGMQLTVATSELFKEWIEHVVPDFEVXRKAI 220 (305)
T ss_pred ecCeEEEEcCC--CCCCeeEEECCCccccccceEEEEEcCCCCCCCCCHHHHHHhhhcCccHHHHHHHHHHHHHHHHHHH
Confidence 99999999874 5689999999887789999999999999999999999999999999999999999999999999987
Q ss_pred c
Q 025322 249 G 249 (254)
Q Consensus 249 ~ 249 (254)
.
T Consensus 221 ~ 221 (305)
T TIGR01240 221 K 221 (305)
T ss_pred H
Confidence 5
No 4
>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism]
Probab=100.00 E-value=2e-52 Score=384.98 Aligned_cols=221 Identities=43% Similarity=0.623 Sum_probs=202.8
Q ss_pred EEEEEccceeeeeeccccccccCCCCCCCeeEEeeCCCCceeEEEE-EecCCCCCceEEecCeeccCCcchHHHHHHHHH
Q 025322 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTV-AVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIR 87 (254)
Q Consensus 9 ~~~a~ap~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V-~~~~~~~~~~i~lnG~~~~~~~~~~~~vl~~~r 87 (254)
.++++|||||||||||||+|+.+|+|.|+||||||+ ++++.+++ +++++.+.|++++||+..+...++++.|++.+|
T Consensus 5 ~~t~~ay~nialIKywGk~D~~l~iP~~~SiS~t~~--df~t~t~~~~~~~~~~~D~~~lNG~~~~~~~~k~~~~ld~~R 82 (329)
T COG3407 5 IITASAYPNIALIKYWGKRDEALNIPLNSSISVTLE--DFSTTTTAEELTENDEEDTFILNGELSEDENEKARRVLDRFR 82 (329)
T ss_pred ceeeEecchhHHHHhccccchhhcCCCCCeeEEEec--cccceeEEEEecCCCCccEEEECCccCchHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999997 58988888 666666679999999987665678999999999
Q ss_pred HHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCCchhh
Q 025322 88 SRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRS 167 (254)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~~Gsa~~s 167 (254)
+.++. ..+++|+++|++|.++|||||||++||+++|+++++++++|..+++++||.+|||+|||
T Consensus 83 ~~~~~----------------~~~~~i~s~n~~ptaaGLaSSaag~AAl~~Al~~~~~~~~d~~~lS~~AR~gSGSa~RS 146 (329)
T COG3407 83 KEYGI----------------SFKVKIVSYNNFPTAAGLASSAAGAAALAAALNRLYDLDLDDEFLSRIARLGSGSASRS 146 (329)
T ss_pred Hhhcc----------------cceEEEEEecCCCccccccccHHHHHHHHHHHHhhhccCCCHHHHHHHHHHhccchhhh
Confidence 97774 57899999999999999999999999999999999999999999999999999999999
Q ss_pred hccCceeeeccccCCCCCeeEEEcccCCCCCceeEEEEEEcCCCcccCcHHHHHhHhhcCccHHHHHHHHHhhHHHHHHh
Q 025322 168 LFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKVQFLILSDCLED 247 (254)
Q Consensus 168 ~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~vv~v~~~~~k~vsS~~gm~~~v~ts~~~~~r~~~~~~~~~~~~e~ 247 (254)
+|||+++|..+. |.++..+++.+...|+++..+++++.+..|++|||+||+.++.|||||++|++.++++++++++.
T Consensus 147 ~~Gg~~~W~~~~---g~~~~~~~~~~~~~~~e~~~i~~~~~~~~k~vsS~~gm~~~~~tS~~y~~w~~~~~~~~~~m~~~ 223 (329)
T COG3407 147 IFGGFVLWEKGE---GEDSAAEQLFRLDLWKELAMIVLVISPKKKKVSSREGMQLTAETSPFYDAWLEHSEEDLEEMKEA 223 (329)
T ss_pred hcCCeeEeccCC---CCccceeeeccccCccccceEEEEEccccCCCCchHHHHHHHHcChHHHHHHHHHHHhHHHHHHH
Confidence 999999999885 45677777777667889999999999999999999999999999999999999999999999998
Q ss_pred hcc
Q 025322 248 IGS 250 (254)
Q Consensus 248 ~~~ 250 (254)
|..
T Consensus 224 ~~~ 226 (329)
T COG3407 224 IRE 226 (329)
T ss_pred Hhc
Confidence 753
No 5
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism]
Probab=99.93 E-value=5.6e-25 Score=201.44 Aligned_cols=173 Identities=20% Similarity=0.250 Sum_probs=134.8
Q ss_pred eEEEEEccceeeeeeccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCee---ccCC-cchHHHHH
Q 025322 8 LMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE---ISLG-GGRYQNCL 83 (254)
Q Consensus 8 ~~~~a~ap~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~---~~~~-~~~~~~vl 83 (254)
.++++++|+++|++ .||||++|++|+ +|.++.+....+ .-++.+.|.. ++.. .+.+.+++
T Consensus 2 ~~~~v~aPASSANl-----------GpGFD~lGlAl~---~~~~~~v~~~~~--~~~i~~~g~~~~~iP~~~~n~~~~~~ 65 (299)
T COG0083 2 LMMKVRVPASSANL-----------GPGFDVLGLALD---LYNDVVVVEVVD--KFEIEVEGEGADKIPLDPENLVYQAA 65 (299)
T ss_pred ceEEEEEeeccccc-----------CCCccceeeecc---ccCcEEEEEecC--cEEEEEecccccCCCCCcceeHHHHH
Confidence 57899999999998 999999999998 777777765432 4566667743 3332 23566777
Q ss_pred HHHHHHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccC-
Q 025322 84 KEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSG- 162 (254)
Q Consensus 84 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~~G- 162 (254)
..+.+.++. +.+++|+++|+||.++|||||||+++|++.|+|++++.+|+.+++.++|..+||
T Consensus 66 ~~~~~~~~~----------------~~~~~i~i~k~IP~~rGLGSSaAsiVAal~aan~l~~~~L~~~~ll~~a~~~EgH 129 (299)
T COG0083 66 LKFLEALGI----------------EAGVKIRIEKGIPLGRGLGSSAASIVAALAAANELAGLPLSKEELLQLALEIEGH 129 (299)
T ss_pred HHHHHHhCC----------------CccEEEEEEcCCCCCCCCcHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcCC
Confidence 777777664 334999999999999999999999999999999999999999999999999999
Q ss_pred --CchhhhccCceeeeccccCCCCCeeEEEcccCCCCCceeEEEEEEcCCCcccCcHHHHHhHh
Q 025322 163 --SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESV 224 (254)
Q Consensus 163 --sa~~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~vv~v~~~~~k~vsS~~gm~~~v 224 (254)
|++||++||++++... ......+++.+ +++++++++++.+ ++|.+ ++++.
T Consensus 130 pDNVapa~lGG~~l~~~~-----~~~~~~~v~~~---~~~~~v~~iP~~e---~sT~~-aR~vL 181 (299)
T COG0083 130 PDNVAPAVLGGLVLVEEE-----SGIISVKVPFP---SDLKLVVVIPNFE---VSTAE-ARKVL 181 (299)
T ss_pred CchHHHHhhCCEEEEeec-----CCceEEEccCC---cceEEEEEeCCcc---ccHHH-HHHhc
Confidence 8999999999877652 23345555422 4899888888654 55544 55554
No 6
>PTZ00299 homoserine kinase; Provisional
Probab=99.90 E-value=6.5e-23 Score=191.36 Aligned_cols=176 Identities=18% Similarity=0.182 Sum_probs=129.5
Q ss_pred eEEEEEccceeeeeeccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCeec---cC-CcchHHHHH
Q 025322 8 LMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEI---SL-GGGRYQNCL 83 (254)
Q Consensus 8 ~~~~a~ap~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~~---~~-~~~~~~~vl 83 (254)
.++++++|+++|++ .|||||||++|+ +|++++|+..+ ..++.++|... +. +.+.+.+++
T Consensus 6 ~~~~v~vPATsANl-----------GpGFDsLGlAL~---lyd~v~v~~~~---~~~i~i~G~~~~~lp~~~~nlv~~a~ 68 (336)
T PTZ00299 6 KKVVLRVPATTANI-----------GPAYDTLGMALS---IFMELTVEHAD---AFSMTVEGEGSEHISTDEDNMVVQAC 68 (336)
T ss_pred ceEEEEEecccccc-----------cccHHHHhhhcc---cCcEEEEEECC---CCEEEEecCCcCCCCCCcchHHHHHH
Confidence 36899999999998 999999999997 89999998643 24567777532 21 234455555
Q ss_pred HHHHHHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCC---HHHHHHHHHhc
Q 025322 84 KEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKEN---QSQLSAIARQG 160 (254)
Q Consensus 84 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~---~~el~~iA~~~ 160 (254)
+.+.+.++.. ..++++|+++++||+++|||||||+++|++.|+++++|.+++ .+++.++|.++
T Consensus 69 ~~~~~~~~~~--------------~~~g~~i~i~k~IP~~~GLGSSsA~avA~l~a~n~l~g~~l~~~~~~el~~~A~~~ 134 (336)
T PTZ00299 69 RLAFEEYAHK--------------SMPPLKFIMHSNIPYGCGCGSSSAAAVAGFVAGMKLCGLTMETENEEALLQAIAKF 134 (336)
T ss_pred HHHHHHhcCC--------------CCCceEEEEecCCCccCCccHHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHhh
Confidence 5555544320 124799999999999999999999999999999999999995 79999999999
Q ss_pred cC---CchhhhccCceeeec-cccCCCCCeeEEEcccCCCCCceeEEEEEEcCCCcccCcHHHHHhH
Q 025322 161 SG---SACRSLFGGFVKWIL-GKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRES 223 (254)
Q Consensus 161 ~G---sa~~s~~GG~v~~~~-~~~~~~~~~~~~~l~~~~~~~~l~~vv~v~~~~~k~vsS~~gm~~~ 223 (254)
|| |+++|++||+++... +. .+....+++.+ +++++|+++++.+ -+++| +.++..
T Consensus 135 EGHpDNVapal~GG~~~~~~~~~----ge~~~~~i~~~---~~~~~vv~iP~~~-~~~sT-~~aR~v 192 (336)
T PTZ00299 135 EGHPDNAAPAIYGGIQLVYKKDN----GRFLTYRVPTP---PNLSVVLFVPHNK-MKANT-HVTRNL 192 (336)
T ss_pred cCCcccHHHHHhCCEEEEEecCC----CceEEEecCCC---CCeEEEEEECCCC-ccccH-HHHHhh
Confidence 98 589999999986442 21 12234455433 5788777776642 12444 445444
No 7
>TIGR00191 thrB homoserine kinase. P.aeruginosa homoserine kinase seems not to be homologous (see PROSITE:PDOC0054)
Probab=99.90 E-value=3.7e-22 Score=183.00 Aligned_cols=171 Identities=19% Similarity=0.221 Sum_probs=127.3
Q ss_pred EEEEccceeeeeeccccccccCCCCCCCeeEEeeCCCCceeEEEEEe----cCCCCCceEEecCee---ccC--CcchHH
Q 025322 10 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAV----SPSFDQDRMWLNGKE---ISL--GGGRYQ 80 (254)
Q Consensus 10 ~~a~ap~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~----~~~~~~~~i~lnG~~---~~~--~~~~~~ 80 (254)
+++++|+++|++ .|||||+|++|+ +|.+++++. ... ..++.+.|.. ++. +.+.+.
T Consensus 1 ~~v~vpatsaNl-----------g~GfD~lg~al~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~Nlv~ 64 (302)
T TIGR00191 1 FRVKVPASSANL-----------GPGFDVLGAALS---LYLGLTVTDVVAQESD--DTEIEAEGEGVEKIPTEPTDNLIY 64 (302)
T ss_pred CEEEEecchhcc-----------ccChhhhhhhcc---ccceEEEEeeecccCC--CceEEEEecccccCCCCcccccHH
Confidence 367899999998 999999999997 899888875 221 1235554432 222 246677
Q ss_pred HHHHHHHHHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 025322 81 NCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQG 160 (254)
Q Consensus 81 ~vl~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~ 160 (254)
++++.+++.++. ...+++|+++++||+++|||||||+++|++.|++++++.+++.+++.++|.++
T Consensus 65 ~a~~~~~~~~g~---------------~~~g~~i~i~~~IP~~~GLGSSsa~~vA~l~a~~~l~~~~l~~~el~~~a~~~ 129 (302)
T TIGR00191 65 QVAKRFLDQLGI---------------RMPPVKVTLEKNIPLGRGLGSSAAAIVAALAAANELCGLPLSKERLLDYASEL 129 (302)
T ss_pred HHHHHHHHHcCC---------------CCCCEEEEEEcCCCCcCCCChHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh
Confidence 888888887764 11579999999999999999999999999999999999999999999999999
Q ss_pred cC---CchhhhccCceeeeccccCCCCCeeEEEcccCCCCCceeEEEEEEcCCCcccCcHHHHH
Q 025322 161 SG---SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMR 221 (254)
Q Consensus 161 ~G---sa~~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~vv~v~~~~~k~vsS~~gm~ 221 (254)
++ +++++++||++++.... ......+++. .+++++++++ + ..+++|.+..+
T Consensus 130 E~h~Dnv~~~l~GG~~~~~~~~----~~~~~~~~~~---~~~~~~vl~~--p-~~~~sT~~a~~ 183 (302)
T TIGR00191 130 EGHPDNVAPALLGGFQLAFVED----DKLEVLKIPI---FSKLDWVLAI--P-NIEVSTAEARA 183 (302)
T ss_pred cCCcccHHHHhccCEEEEEEcC----CceEEEEeCC---CCCEEEEEEE--C-CCcccHHHHHH
Confidence 97 58899999998765432 1122233321 1567755444 3 45677766654
No 8
>PRK01212 homoserine kinase; Provisional
Probab=99.89 E-value=1.1e-21 Score=179.18 Aligned_cols=174 Identities=22% Similarity=0.272 Sum_probs=132.7
Q ss_pred eEEEEEccceeeeeeccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCC-CceEEecCee---ccC--CcchHHH
Q 025322 8 LMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFD-QDRMWLNGKE---ISL--GGGRYQN 81 (254)
Q Consensus 8 ~~~~a~ap~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~-~~~i~lnG~~---~~~--~~~~~~~ 81 (254)
+|+++++|+..|++ .|+||++|++|+ +|++.+|+..++.. ..++.+.|.. ++. +.+.+.+
T Consensus 2 ~~~~v~~pat~anl-----------g~gfd~lG~al~---~~d~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~Nli~~ 67 (301)
T PRK01212 2 MMVKVRVPATSANL-----------GPGFDSLGLALS---LYDEVLVGDVVSVEAEFSIEVIGEGADKLPLDPEKNLVYQ 67 (301)
T ss_pred ceEEEEEecchhhc-----------ccChhhhhcccc---CccEEEEEEccCCCCceEEEEEecCCCcCCCCCccccHHH
Confidence 46889999999997 999999999996 99999997643200 1225554431 222 2467788
Q ss_pred HHHHHHHHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcc
Q 025322 82 CLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGS 161 (254)
Q Consensus 82 vl~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~~ 161 (254)
+++.+++.++. ..+++|+++++||.++|||||||.++|++.|+++++|.+++.+++.++|++++
T Consensus 68 a~~~~~~~~~~----------------~~~~~I~i~k~IP~~~GLGssSa~aaA~l~al~~l~~~~l~~~eL~~~a~~~e 131 (301)
T PRK01212 68 AALKFLEKLGK----------------PPGLRIELEKNIPLGRGLGSSAASIVAGLVAANELAGLPLSKEELLQLATEGE 131 (301)
T ss_pred HHHHHHHHcCC----------------CCCeEEEEEeCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Confidence 88888887764 35799999999999999999999999999999999999999999999999999
Q ss_pred C---CchhhhccCceeeeccccCCCCCeeEEEcccCCCCCceeEEEEEEcCCCcccCcHHHHHh
Q 025322 162 G---SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRE 222 (254)
Q Consensus 162 G---sa~~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~vv~v~~~~~k~vsS~~gm~~ 222 (254)
+ +++++++||++++..+. .....+++.+ ++++++++ .+ ...++|.+.++.
T Consensus 132 ~~~ddv~~~l~GG~~~~~~g~-----g~~~~~~~~~---~~~~~vlv--~p-~~~~sT~~a~~~ 184 (301)
T PRK01212 132 GHPDNVAPALLGGLVLALEEN-----GVISVKIPVF---DDLKWVVA--IP-NIELSTAEARAV 184 (301)
T ss_pred CCHHHHHHHHhCCEEEEEECC-----ceEEEEecCC---CCeEEEEE--EC-CCcCCHHHHHHh
Confidence 8 78899999999764332 2345555432 55664444 33 456777777653
No 9
>PLN02451 homoserine kinase
Probab=99.84 E-value=7.7e-20 Score=172.73 Aligned_cols=142 Identities=20% Similarity=0.223 Sum_probs=113.5
Q ss_pred eeEEEEEccceeeeeeccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCC--CCCceEE-ecCee--ccCC--cchH
Q 025322 7 VLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPS--FDQDRMW-LNGKE--ISLG--GGRY 79 (254)
Q Consensus 7 ~~~~~a~ap~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~--~~~~~i~-lnG~~--~~~~--~~~~ 79 (254)
..++++++|++||++ .|+||++|+++| +||++++++..++ ..+.+|. +.|.. .+.. .+.+
T Consensus 51 ~~~~~~~aPA~~ANL-----------GpgfD~lG~a~d--~l~d~v~~~~~~~~~~~~~~i~~~~g~~~~l~~~~~~Nlv 117 (370)
T PLN02451 51 FTSVKAFAPATVANL-----------GPGFDFLGCAVD--GLGDFVTARVDPGVRPGEVSISEITGDTGRLSKDPLRNCA 117 (370)
T ss_pred cceEEEEeccchhhc-----------ccChhhhhhhhc--cCcCEEEEEECCCCCcccEEEEEeccccccCCCCcccCcH
Confidence 457999999999997 999999999998 6999999987642 0123343 33442 2222 4566
Q ss_pred HHHHHHHHHHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHh
Q 025322 80 QNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQ 159 (254)
Q Consensus 80 ~~vl~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~ 159 (254)
.++++.+.++++. ...+++|+++++||+++|||||||.++|++.|+++++|.+++.+|+.++|.+
T Consensus 118 ~~a~~~~~~~~g~---------------~~~gv~I~i~k~IP~g~GLGSSaA~avA~l~aln~l~g~~ls~~eL~~la~~ 182 (370)
T PLN02451 118 GIAAIATMKLLGI---------------RSVGLSLSLHKGLPLGSGLGSSAASAAAAAVAVNELFGSPLGKDDLVLAGLE 182 (370)
T ss_pred HHHHHHHHHHcCC---------------CCCCEEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 7777777776653 1358999999999999999999999999999999999999999999999998
Q ss_pred ccC--------CchhhhccCceeee
Q 025322 160 GSG--------SACRSLFGGFVKWI 176 (254)
Q Consensus 160 ~~G--------sa~~s~~GG~v~~~ 176 (254)
+++ +++++++||+++..
T Consensus 183 ~E~~v~g~h~Dnva~a~~GG~v~~~ 207 (370)
T PLN02451 183 SEAKVSGYHADNIAPALMGGFVLIR 207 (370)
T ss_pred HhchhcCCCccchhHhhcCCEEEEE
Confidence 876 45678999998654
No 10
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.78 E-value=9.9e-18 Score=152.15 Aligned_cols=177 Identities=19% Similarity=0.165 Sum_probs=124.6
Q ss_pred EEEEEccceeeeeec---cccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCeeccC-CcchHHHHHH
Q 025322 9 MVTAQTPTNIAVIKY---WGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISL-GGGRYQNCLK 84 (254)
Q Consensus 9 ~~~a~ap~nIaliKY---wGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~~~~-~~~~~~~vl~ 84 (254)
++++.||+.|-| | .|+|...| -.-.||.++++ +|++++|+..++ ...++..+....+. ..+.+.++++
T Consensus 2 ~~~~~apakinl--~l~i~g~~~dg~--h~l~si~~ai~---l~~~v~v~~~~~-~~~~i~~~~~~~~~~~~n~~~~~~~ 73 (286)
T PRK00128 2 KILEKAPAKINL--SLDVLGKREDGY--HEVEMIMQTID---LADRLEIEKLKE-DGIVVESNNRYVPNDERNLAYKAAK 73 (286)
T ss_pred eEEEeccceEEE--EeecCccCCCCc--ceeheeeEecC---CCcEEEEEECCC-CCEEEEeCCCCCCCCCCcHHHHHHH
Confidence 467889999954 4 56664422 22259999997 899999976542 12233322211221 3456777888
Q ss_pred HHHHHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCCc
Q 025322 85 EIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSA 164 (254)
Q Consensus 85 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~~Gsa 164 (254)
.+++.++. ..+++|+++++||+++|||||||.++|++.|+++++|.+++.+++.++|.+++.|+
T Consensus 74 ~~~~~~~~----------------~~~~~i~i~~~iP~~~GLGSSsa~a~a~~~al~~~~~~~l~~~~l~~~a~~~g~dv 137 (286)
T PRK00128 74 LLKERYNI----------------KQGVSITIDKNIPVAAGLAGGSSDAAATLRGLNKLWNLGLSLEELAEIGLEIGSDV 137 (286)
T ss_pred HHHHhcCC----------------CCCeEEEEEcCCCccccchHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCCCC
Confidence 77776653 35799999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCceeeeccccCCCCCeeEEEcccCCCCCceeEEEEEEcCCCcccCcHHHHH
Q 025322 165 CRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMR 221 (254)
Q Consensus 165 ~~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~vv~v~~~~~k~vsS~~gm~ 221 (254)
+++++||+++.... + . ...+++. .|+++ ++++.+ ...++|.+.++
T Consensus 138 ~~~~~Gg~~~~~~~-g---~--~~~~~~~---~~~~~--~vv~~p-~~~~~T~~~~~ 182 (286)
T PRK00128 138 PFCIYGGTALATGR-G---E--KITPLKS---PPSCW--VVLAKP-DIGVSTKDVYK 182 (286)
T ss_pred CeEeeCCeEEEecC-C---c--ccccCCC---CCCcE--EEEEcC-CCCCCHHHHHh
Confidence 99999999864422 1 1 1233332 25666 344444 35676766544
No 11
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.78 E-value=1.4e-17 Score=151.17 Aligned_cols=176 Identities=18% Similarity=0.098 Sum_probs=124.2
Q ss_pred EEEEccceeeeeeccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCeeccCCcchHHHHHHHHHHH
Q 025322 10 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIRSR 89 (254)
Q Consensus 10 ~~a~ap~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~~~~~~~~~~~vl~~~r~~ 89 (254)
+.+-|-.|+.| +=-|||... .-.-.|+=.+++ +|++++++..+ ..++..++...+.+.+.+.++++.+++.
T Consensus 4 ~~a~aKiNL~L-~i~~kr~dg--yH~l~s~~~ai~---l~d~v~i~~~~---~~~i~~~~~~~~~~~n~v~~a~~~~~~~ 74 (275)
T PRK14611 4 LLSPAKVNLGL-WILGKRPDG--YHEIFTIYHTID---LYDRIYIKEHH---TLEVKTSSPQIKEEENIVYKALRLFERY 74 (275)
T ss_pred eeecceEEeee-ccCcCCCCC--cchhhheeEecc---CCcEEEEEECC---cEEEEeCCCCCCCcccHHHHHHHHHHHH
Confidence 34444455555 445776433 334456667886 89989887642 3455555543333456788888888887
Q ss_pred ccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCCchhhhc
Q 025322 90 ACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLF 169 (254)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~~Gsa~~s~~ 169 (254)
++. ..+++|+++++||+++|||||||+++|++.|+++++|.+++.+++.++|..+++|++++++
T Consensus 75 ~g~----------------~~~~~i~i~k~IP~~~GLGSSsA~aaA~l~al~~~~~~~l~~~~l~~la~~i~~D~~~~~~ 138 (275)
T PRK14611 75 TGI----------------DINYSIFIEKNIPVGAGLGGGSSNAAVVLKYLNELLGNPLSEEELFELASSISADAPFFLK 138 (275)
T ss_pred hCC----------------CCCeEEEEEeCCCCcCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCeeec
Confidence 654 3589999999999999999999999999999999999999999999999999999988999
Q ss_pred cCceeeeccccCCCCCeeEEEcccCCCCCceeEEEEEEcCCCcccCcHHHHHh
Q 025322 170 GGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRE 222 (254)
Q Consensus 170 GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~vv~v~~~~~k~vsS~~gm~~ 222 (254)
||++++.... ....+++.+ +++.+ +++++ ...++|.+..+.
T Consensus 139 Gg~~~~~~~g------~~~~~~~~~---~~~~~--vv~~p-~~~~sT~~~~~~ 179 (275)
T PRK14611 139 GGFALGRGIG------DKLEFLEKP---ISREI--TLVYP-NIKSSTGRVYSK 179 (275)
T ss_pred CCeEEEeccC------ceeEECCcC---CCcEE--EEEeC-CCCCChHHHHHh
Confidence 9998754321 113344322 23443 44444 456777776653
No 12
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.78 E-value=8.5e-18 Score=153.83 Aligned_cols=174 Identities=14% Similarity=0.134 Sum_probs=127.0
Q ss_pred EEEccceeeeeeccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCee---ccC-CcchHHHHHHHH
Q 025322 11 TAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE---ISL-GGGRYQNCLKEI 86 (254)
Q Consensus 11 ~a~ap~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~---~~~-~~~~~~~vl~~~ 86 (254)
.+-|-.|+.| .=-|||+.. .-.-+|+.++++ +|++++++..+ ..++.+.|.. .+. +.+.+.++++.+
T Consensus 4 ~a~aKiNl~L-~i~~kr~dg--yH~l~s~~~ai~---l~d~v~i~~~~---~~~i~~~~~~~~~~~~~~~nl~~~~~~~~ 74 (300)
T PRK03188 4 RAPAKVNLHL-GVGPLRDDG--YHELATVFQAVS---LYDEVTVTAAD---VLSVEVSGEGADQVPTDESNLAWRAAELL 74 (300)
T ss_pred eecceEEEee-ccCCcCCCC--ccchHhhheehh---hccEEEEEECC---CcEEEEecCCccCCCCCCccHHHHHHHHH
Confidence 3444456665 455888765 455689999997 99999997653 3456776652 222 345677888888
Q ss_pred HHHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCCchh
Q 025322 87 RSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACR 166 (254)
Q Consensus 87 r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~~Gsa~~ 166 (254)
++.++. .++++|+++++||+++|||||||+++|++.|+++++|.+++.+++.++|.+++.|++.
T Consensus 75 ~~~~~~----------------~~~~~I~i~s~IP~~~GLGSSSA~a~A~l~al~~~~g~~ls~~el~~~a~~ig~dv~~ 138 (300)
T PRK03188 75 AEHVGR----------------APDVHLHIDKGIPVAGGMAGGSADAAAALVACDALWGLGLSRDELLELAAELGSDVPF 138 (300)
T ss_pred HHHhCC----------------CCCeEEEEEcCCcccCcchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcch
Confidence 887764 3589999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCceeeeccccCCCCCeeEEEcccCCCCCceeEEEEEEcCCCcccCcHHHHH
Q 025322 167 SLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMR 221 (254)
Q Consensus 167 s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~vv~v~~~~~k~vsS~~gm~ 221 (254)
+++||+++.... + . ...++..+ +++..++++++ ..++|++.++
T Consensus 139 ~~~GG~~~~~~~-g---~--~~~~~~~~---~~~~~~lv~p~---~~~sT~~~~~ 181 (300)
T PRK03188 139 ALLGGTALGTGR-G---E--QLAPVLAR---GTFHWVLAFAD---GGLSTPAVFR 181 (300)
T ss_pred hhcCCeEEEEec-C---C--EEEECCCC---CCcEEEEEeCC---CCCCHHHHHH
Confidence 999999864422 1 1 22333322 44554444433 4567777654
No 13
>PRK03926 mevalonate kinase; Provisional
Probab=99.77 E-value=4e-17 Score=149.00 Aligned_cols=140 Identities=20% Similarity=0.237 Sum_probs=106.7
Q ss_pred EEEEEccceeeeeeccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCeeccCCcchHHHHHHHHHH
Q 025322 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIRS 88 (254)
Q Consensus 9 ~~~a~ap~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~~~~~~~~~~~vl~~~r~ 88 (254)
|++++||..|-|+ |.|...+..| +|+++++ +|++++++..++ ...+..+..+.+.....+..+++.+++
T Consensus 1 ~~~~~aPgkv~L~---Geh~~~~g~~---~l~~aI~---~~~~v~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~ 69 (302)
T PRK03926 1 MVLCSAPGKIYLF---GEHAVVYGKP---AIACAID---LRTYVRAEFNDD--SIYIESDYGKTGEKHPYVSAAIEKMRE 69 (302)
T ss_pred CeEEeeeeEEEEE---ecceeecCCe---EEEEEec---ceEEEEEEECCC--ceEEecccccccchhHHHHHHHHHHHH
Confidence 4788999999996 8998877554 9999997 899888876531 222221211111112235567777766
Q ss_pred HccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhc--------
Q 025322 89 RACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQG-------- 160 (254)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~-------- 160 (254)
.++. .+++|+++++||+++|||||||.++|++.|++++++.+++.+++.++|..+
T Consensus 70 ~~~~-----------------~g~~i~i~~~iP~~~GLGSSsA~~~a~~~al~~~~~~~l~~~~l~~la~~~E~~~~G~~ 132 (302)
T PRK03926 70 EADK-----------------DGVTVSITSQIPVGSGLGSSAAVTVATIGALNRLLGLGLSLEEIAKLGHKVELLVQGAA 132 (302)
T ss_pred hcCC-----------------CCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcCCC
Confidence 5432 379999999999999999999999999999999999999999999999766
Q ss_pred cC-CchhhhccCceeee
Q 025322 161 SG-SACRSLFGGFVKWI 176 (254)
Q Consensus 161 ~G-sa~~s~~GG~v~~~ 176 (254)
+| |++.+++||++.+.
T Consensus 133 sg~D~~~~~~Gg~~~~~ 149 (302)
T PRK03926 133 SPTDTYVSTMGGFVTIP 149 (302)
T ss_pred chHHHHHHhcCCeEEEc
Confidence 23 67889999998664
No 14
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.75 E-value=7.6e-17 Score=148.51 Aligned_cols=179 Identities=17% Similarity=0.163 Sum_probs=123.7
Q ss_pred EEEEEccceeeee-eccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEe--cCeeccC-CcchHHHHHH
Q 025322 9 MVTAQTPTNIAVI-KYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWL--NGKEISL-GGGRYQNCLK 84 (254)
Q Consensus 9 ~~~a~ap~nIali-KYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~l--nG~~~~~-~~~~~~~vl~ 84 (254)
++++.||+.|=|- +=-|+| .++|+.+++.+..=++|++++|+..++ +.+.+ +....+. ..+.+.++++
T Consensus 3 ~~~~~apakiNL~L~i~g~~-----~dGy~~l~~~~~~i~l~d~v~v~~~~~---~~~~~~~~~~~~~~~~~n~~~~~~~ 74 (312)
T PRK02534 3 SYTLIAPAKINLHLEILGDR-----PDGFHELAMVMQSIDLADRLELRNNGD---GTIRLHCDHPQLSTDDDNLIYRAAQ 74 (312)
T ss_pred eEEEEeceEEEeccccCccC-----CCCCCceEEEEEECCCCCEEEEEECCC---CcEEEEECCCCCCCCchhHHHHHHH
Confidence 5778899988540 112553 457888887632223899888876542 23333 2211222 2356777888
Q ss_pred HHHHHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCCc
Q 025322 85 EIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSA 164 (254)
Q Consensus 85 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~~Gsa 164 (254)
.+++.++. ...+++|+++++||+++|||||||.++|++.|++++++++++.+++.++|.++++|+
T Consensus 75 ~~~~~~~~---------------~~~~~~i~i~~~IP~~~GLGSssa~~~A~~~al~~~~~~~l~~~~l~~~a~~~g~dv 139 (312)
T PRK02534 75 LLRKRFPF---------------AEGGVDITLEKRIPIGAGLAGGSTDAAAVLVGLNLLWGLGLTQPELESLAAELGSDV 139 (312)
T ss_pred HHHHHhCC---------------CCCCeEEEEecCCCCcCCccHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCC
Confidence 88877653 125799999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCceeeeccccCCCCCeeEEEcccCCCCCceeEEEEEEcCCCcccCcHHHHH
Q 025322 165 CRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMR 221 (254)
Q Consensus 165 ~~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~vv~v~~~~~k~vsS~~gm~ 221 (254)
+++++||++++.... + ...+++.+ +++.++++ .++ ...++|.+.+.
T Consensus 140 ~~~~~GG~~~~~~~g----~--~~~~~~~~---~~~~~vv~-~~p-~~~~~T~~a~~ 185 (312)
T PRK02534 140 PFCIAGGTQLCFGRG----E--ILEPLPDL---DGLGVVLA-KYP-SLSVSTPWAYK 185 (312)
T ss_pred cEEeECCeEEEECCC----C--EeEECCCC---CCcEEEEE-ECC-CCCccHHHHHH
Confidence 999999998755321 1 13455432 45553322 244 35577766543
No 15
>PTZ00298 mevalonate kinase; Provisional
Probab=99.74 E-value=7.4e-17 Score=149.72 Aligned_cols=182 Identities=13% Similarity=0.110 Sum_probs=125.6
Q ss_pred eEEEEEccceeeeeeccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCeeccC----CcchHHHHH
Q 025322 8 LMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISL----GGGRYQNCL 83 (254)
Q Consensus 8 ~~~~a~ap~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~~~~----~~~~~~~vl 83 (254)
+..+.+||+.+.| +|.|-..|.+| +|-.+++ ++.++++++.+......+..+....+. ..+.+.+++
T Consensus 9 ~~~~~~~~~kvil---~GEHaVvyg~~---aI~~~I~---~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~a~ 79 (328)
T PTZ00298 9 TTGKHIGYGKVIL---FGEHFVVYGAE---AIVAGID---EYTECRLELTKGVPGLQVVDQRPAVPGYIVEKREEQRKAH 79 (328)
T ss_pred cccCCCcCeeEEE---EecceeecCCc---hhhhecc---cceEEEEEEccCCCCceeccccccccchHHHhHHHHHHHH
Confidence 3567899999998 79999999999 9999997 677777876542111122222111111 134455677
Q ss_pred HHHHHHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcc--
Q 025322 84 KEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGS-- 161 (254)
Q Consensus 84 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~~-- 161 (254)
+.+.+.++.. ....+++|+++++||+++|||||||.++|++.|++++++++++.+++.++|..+|
T Consensus 80 ~~~~~~~~~~-------------~~~~g~~I~I~~~IP~gaGLGSSsA~avA~l~al~~l~~~~ls~~el~~~a~~~E~~ 146 (328)
T PTZ00298 80 QLVLRHLNID-------------TSVDGLKMHLGGPLVPSSGIGASASDVVSLSRALSELYQLNLTEEEVNLSAFVGEGG 146 (328)
T ss_pred HHHHHHHhcc-------------cCCCCeEEEEECCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 7777766531 0124899999999999999999999999999999999999999999999997643
Q ss_pred ------C-CchhhhccCceeeeccccCCCCCeeEEEcccCCCCCceeEEEEEEcCCCcccCcHHHHH
Q 025322 162 ------G-SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMR 221 (254)
Q Consensus 162 ------G-sa~~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~vv~v~~~~~k~vsS~~gm~ 221 (254)
| |...+++||++...... +. ....+++.+ +++. ++++++ ....+|.+.+.
T Consensus 147 ~~g~~sG~D~~~~~~Gg~~~~~~~~---g~-~~~~~l~~~---~~~~--lvv~~~-~~~~sT~~~~~ 203 (328)
T PTZ00298 147 YHGTPSGADNTAATYGGLISYRRVN---GK-SVFKRIAFQ---QPLY--LVVCST-GITASTTKVVG 203 (328)
T ss_pred hcCCCChHHHHHHHcCCeEEEecCC---Cc-cceeEecCC---CCCe--EEEEEC-CCchhHHHHHH
Confidence 2 56779999998654321 11 123344322 4455 445555 45666666554
No 16
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.73 E-value=5.4e-16 Score=141.95 Aligned_cols=177 Identities=18% Similarity=0.145 Sum_probs=124.4
Q ss_pred EEEccceeeee-eccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCee---ccC-CcchHHHHHHH
Q 025322 11 TAQTPTNIAVI-KYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE---ISL-GGGRYQNCLKE 85 (254)
Q Consensus 11 ~a~ap~nIali-KYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~---~~~-~~~~~~~vl~~ 85 (254)
+..||+.|=|- +=-|||+.. .-.-+|+=.+++ |+++.+++..+ ...+.+.|.. ++. ..+.+.++++.
T Consensus 8 ~~~a~aKiNL~L~i~~kr~dG--yH~l~s~~~~i~---l~D~l~i~~~~---~~~i~~~~~~~~~ip~~~~Nlv~ka~~~ 79 (290)
T PRK14608 8 TEFAPAKINLALHVTGRRADG--YHLLESLVAFAD---VGDRLTLEPAE---ALSLTVSGPFAAGLGDGDDNLVLRAARA 79 (290)
T ss_pred EEEeceeEEeeeccCCCCCCC--CcceeEEEEECC---CCcEEEEEECC---CCcEEEeCCCccCCCCCCCcHHHHHHHH
Confidence 34566555442 445887664 333456656775 89999887653 2335555432 222 34667778888
Q ss_pred HHHHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCCch
Q 025322 86 IRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSAC 165 (254)
Q Consensus 86 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~~Gsa~ 165 (254)
+++.++. ..++++|+++++||+++|||||||+++|++.++++++|.+++.+++.++|..+++|++
T Consensus 80 ~~~~~g~---------------~~~~~~i~i~k~IP~~~GLGsssa~aaa~l~~l~~l~~~~ls~~el~~la~~ig~dv~ 144 (290)
T PRK14608 80 LRARVGP---------------GLPPGAFHLEKNLPVAAGIGGGSADAAAALRLLARLWGLALDDERLAALALSLGADVP 144 (290)
T ss_pred HHHHhCC---------------CCCceEEEEEeCCcCcCCchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcc
Confidence 8877652 1357999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCceeeeccccCCCCCeeEEEcccCCCCCceeEEEEEEcCCCcccCcHHHHHh
Q 025322 166 RSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRE 222 (254)
Q Consensus 166 ~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~vv~v~~~~~k~vsS~~gm~~ 222 (254)
++++||+++.. +.+ + ...+++. .|++.+ +++.+ ...++|.+..+.
T Consensus 145 ~~l~gg~~~~~-g~g---~--~~~~l~~---~~~~~~--vv~~p-~~~~sT~~~~~~ 189 (290)
T PRK14608 145 VCLDSRPLIMR-GIG---E--ELTPLPG---LPSLPA--VLVNP-GVPVATPDVFRA 189 (290)
T ss_pred hhhcCCeEEEE-ecC---C--EeEECCC---CCCcEE--EEECC-CCCcChHHHHHh
Confidence 99999998533 221 1 1344432 366664 44444 467877776653
No 17
>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.72 E-value=1.2e-16 Score=143.41 Aligned_cols=186 Identities=18% Similarity=0.253 Sum_probs=136.7
Q ss_pred EEEEEccceeeeeeccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCeeccCCcchHHHHHHHHHH
Q 025322 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIRS 88 (254)
Q Consensus 9 ~~~a~ap~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~~~~~~~~~~~vl~~~r~ 88 (254)
+.+++||.-+.+| +-+|.--=-.+.|| |+++++|++++ +..+.|++.. +.+++.+|++.+++
T Consensus 2 ~~~a~A~g~~TIi---------NAiatG~G~Afgid---L~v~a~v~~~~-----~~~~~~~~~~-d~~li~~~~~~v~e 63 (278)
T COG1685 2 MGRARAYGGGTII---------NAIATGKGSAFGID---LKVEAEVRLSD-----EGKVRGEPEG-DTRLIERCVERVRE 63 (278)
T ss_pred CceEEecCceeEe---------eehhcCccceeeec---ceEEEEEEEcC-----ccccccCCCC-ChHHHHHHHHHHHH
Confidence 4567777777776 11221111135565 78999998864 3345555433 34678899999999
Q ss_pred HccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcc-------
Q 025322 89 RACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGS------- 161 (254)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~~------- 161 (254)
+++. ..+++++++++||+++||.||||.++|++.|..+++|.++++.++.+++.+.|
T Consensus 64 ~~g~----------------~~~~~v~v~SeiP~~~GLkSSSA~~nAlv~A~~~~~g~~~~~~~i~~l~a~~S~~aGvSv 127 (278)
T COG1685 64 KYGI----------------PLGVEVEVESEIPVGSGLKSSSAASNALVKAVLKALGEEIDDFEILRLGARASKEAGVSV 127 (278)
T ss_pred HcCC----------------CcceEEEEecCCCcccCcchhHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHhcCceE
Confidence 9986 46899999999999999999999999999999999999999999999997764
Q ss_pred -C---CchhhhccCceeeeccccCCCCCeeEEEcccCCCCCceeEEEEEEcCCCcccCcHHHHHhHhhcCccHHHHHHHH
Q 025322 162 -G---SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKVQ 237 (254)
Q Consensus 162 -G---sa~~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~vv~v~~~~~k~vsS~~gm~~~v~ts~~~~~r~~~~ 237 (254)
| |+|+|+|||++++++.+- -+..+. ..+++.++ |.-|+.|..+......++...+|+++.-++.+
T Consensus 128 TGA~DDa~AS~~GG~~iTDN~~m-----~Ilrr~----~~~~~~vl--I~~p~~k~~~~~vdv~~~r~~a~~~e~A~~lA 196 (278)
T COG1685 128 TGAFDDACASYLGGIVITDNRKM-----RILRRL----DLPELTVL--ILAPGEKRLSANVDVNRLRLIAPVVEEAFRLA 196 (278)
T ss_pred eccchHHHHHHhCCeEEecchhh-----eehhcc----ccCCceEE--EEecCCccccccCCHHHHHHhhHHHHHHHHHH
Confidence 3 789999999999887641 122222 24777744 44444565566667788888889988877765
Q ss_pred Hh
Q 025322 238 FL 239 (254)
Q Consensus 238 ~~ 239 (254)
-.
T Consensus 197 ~~ 198 (278)
T COG1685 197 LK 198 (278)
T ss_pred hc
Confidence 43
No 18
>TIGR00144 beta_RFAP_syn beta-RFAP synthase. This protein family contains several archaeal examples of beta-ribofuranosylaminobenzene 5-prime-phosphate synthase (beta-RFAP synthase), an enzyme involved in methanopterin biosynthesis. In some species, two members of this family are found. It is unclear whether both act as beta-RFAP synthase. This family is related to the GHMP kinases (Galactokinase, Homoserine kinase, Mevalonate kinase, Phosphomevalonate kinase). Members are found so far only in the Archaea and in Methylobacterium extorquens.
Probab=99.72 E-value=3.8e-16 Score=145.23 Aligned_cols=154 Identities=14% Similarity=0.161 Sum_probs=110.2
Q ss_pred CCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCe---ecc--CCcchHHHHHHHHHHHccccccccccchhhcccccc
Q 025322 35 VNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGK---EIS--LGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQK 109 (254)
Q Consensus 35 ~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~---~~~--~~~~~~~~vl~~~r~~~~~~~~~~~~~~~~~~~~~~ 109 (254)
.|.++|++|+ +++++++|+..+ +.++.+++. ..+ ...+.+.++++.+.+.++.
T Consensus 23 ~~Gg~G~al~--~~~~~v~v~~~~---~~~v~~~~~~g~~l~~~~~~n~~~~~~~~~~~~~g~----------------- 80 (324)
T TIGR00144 23 VDGGVGLALE--EPEIVIGLKESD---DMGVEFTSHAEGKLGEEYRRSRIMEAARKTLKHIGS----------------- 80 (324)
T ss_pred cccceEEEEe--CCcEEEEEEECC---CceEEecccccccccchhHHHHHHHHHHHHHHHhCC-----------------
Confidence 5889999999 689988888764 344554332 111 1224455566655555432
Q ss_pred cceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccC---CchhhhccCceeeec---cccCC-
Q 025322 110 LHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSG---SACRSLFGGFVKWIL---GKEGN- 182 (254)
Q Consensus 110 ~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~~G---sa~~s~~GG~v~~~~---~~~~~- 182 (254)
.+++|+++++||.++|||||||.++|++.|++++++.+++.+|+.++|.++++ +++++++||+++... ....+
T Consensus 81 ~~~~i~i~~~IP~~~GLGSsaa~avA~~~a~~~l~~~~ls~~el~~~a~~ge~s~~~va~~~~GG~vv~~G~~~~~~~~~ 160 (324)
T TIGR00144 81 EGFHFTVRSMFPAHSGLGSGTQLSLAVGRLVSEYYGMKFTAREIAHIVGRGGTSGIGVASFEDGGFIVDGGHSSKEKSDF 160 (324)
T ss_pred CCEEEEEeecCCCccCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCCCCCccceeeeeeCCEEEECCccccccccc
Confidence 47999999999999999999999999999999999999999999999999988 789999999986521 00000
Q ss_pred --------CCCeeEEEcccCCCCCceeEEEEEEcCCCcccCc
Q 025322 183 --------GSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSS 216 (254)
Q Consensus 183 --------~~~~~~~~l~~~~~~~~l~~vv~v~~~~~k~vsS 216 (254)
.......+++ +|++++++++++.+ .++.
T Consensus 161 ~~~~~~~~~~~~~~~r~~----~p~~~~vlviP~~~--~t~~ 196 (324)
T TIGR00144 161 LPSSASSAKPAPVIARYD----FPDWNIILAIPEID--SVSG 196 (324)
T ss_pred CcccccCCCCCCeEEecC----CCCcEEEEEecCCC--CCCc
Confidence 0111233433 47888888887764 4444
No 19
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.72 E-value=5.5e-16 Score=142.33 Aligned_cols=182 Identities=13% Similarity=0.078 Sum_probs=131.9
Q ss_pred EEEEEccceeeeee-ccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCeeccCCcchHHHHHHHHH
Q 025322 9 MVTAQTPTNIAVIK-YWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIR 87 (254)
Q Consensus 9 ~~~a~ap~nIaliK-YwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~~~~~~~~~~~vl~~~r 87 (254)
.++..||+.|=|-. =-|||+.. .-.-+|++++++ .++++.+++..+. .+.++..++.+.+...+.+.++++.++
T Consensus 6 ~~~~~apaKINL~L~v~~kr~DG--yH~l~sl~~~i~--~~~D~l~i~~~~~-~~i~~~~~~~~~~~~~Nlv~~a~~~~~ 80 (296)
T PRK14615 6 AVTLRSGCKVNLDLRITGVRPDG--YHEIDSLFLPLP--EPHDELHVRVTDA-PGITVTCTIPDLDPERNTVTRAYTAFA 80 (296)
T ss_pred eEEEEecceEEeccccCCcCCCC--CcceEEEEEECC--CCCcEEEEEECCC-CCEEEEECCCCCCCCccHHHHHHHHHH
Confidence 45667777666532 34788665 555789999997 4689888876542 124455555433333466778888888
Q ss_pred HHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCCchhh
Q 025322 88 SRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRS 167 (254)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~~Gsa~~s 167 (254)
+.++. .++++|+++++||+++|||||||.++|++.+++++++.+++.+++.++|..++++++.+
T Consensus 81 ~~~~~----------------~~~~~i~i~k~IP~~~GLGsgsa~aaa~l~al~~l~~~~l~~~~l~~~a~~~gaDvPff 144 (296)
T PRK14615 81 AATGF----------------RPPLEVHLRKGIPHGAGLGGGSADAAALLRHLNSIAPHPLSPEALAKLAAGVGADVPFF 144 (296)
T ss_pred HHhCC----------------CCCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCCeee
Confidence 87764 35899999999999999999999999999999999999999999999999999998878
Q ss_pred hccCceeeeccccCCCCCeeEEEcccCCCCCceeEEEEEEcCCCcccCcHHHHHh
Q 025322 168 LFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRE 222 (254)
Q Consensus 168 ~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~vv~v~~~~~k~vsS~~gm~~ 222 (254)
++||.++ ..+.+. ...+++. +.|++.+ +++.+ ...+||.+.++.
T Consensus 145 l~gg~a~-~~G~Ge-----~~~~l~~--~~~~~~~--vl~~P-~~~vsT~~a~~~ 188 (296)
T PRK14615 145 LHNVPCR-ATGIGE-----ILTPVAL--GLSGWTL--VLVCP-EVQVSTPWAYAA 188 (296)
T ss_pred ccCCCEE-EEeeEe-----EEEECCC--CCCCcEE--EEECC-CCCcChHHHHHH
Confidence 8899874 444321 2334431 2355553 34445 577888887764
No 20
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.72 E-value=2.9e-16 Score=142.41 Aligned_cols=174 Identities=17% Similarity=0.156 Sum_probs=122.0
Q ss_pred EEEEccceeeee-eccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCeeccC-CcchHHHHHHHHH
Q 025322 10 VTAQTPTNIAVI-KYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISL-GGGRYQNCLKEIR 87 (254)
Q Consensus 10 ~~a~ap~nIali-KYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~~~~-~~~~~~~vl~~~r 87 (254)
++..||+.|-|= .=-||+.. ....-||++++++ +|++++++..++ +.++.+++...+. ..+.+.++++.++
T Consensus 3 ~~~~a~aKiNl~L~i~~~~~d--gyH~l~sl~~al~---l~d~v~i~~~~~--~~~i~~~~~~~p~~~~Nli~ka~~~~~ 75 (276)
T PRK14612 3 MERLAPAKVNLGLSVLGRRED--GYHELHTLMVPLD---VGDRLEVEPIAS--GLELRVLGADLPTDERNLVYRAARAYL 75 (276)
T ss_pred eEEeeCcEEeeccccCCCCCC--CCceeEEEEEECC---CCCEEEEEECCC--cEEEEcCCCCCCCCCcccHHHHHHHHH
Confidence 445677776652 22366543 3566789999997 999999976432 3445555542332 2456777888888
Q ss_pred HHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCCchhh
Q 025322 88 SRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRS 167 (254)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~~Gsa~~s 167 (254)
+.++. .++++|+++++||+++|||||||.++|++.+++++++.+++ +.++|..+++|++++
T Consensus 76 ~~~g~----------------~~~~~I~i~k~IP~~~GLGssSa~aaa~l~al~~l~~~~l~---l~~ia~~~g~dv~~~ 136 (276)
T PRK14612 76 DAAGQ----------------PGGVRITLEKRLPLAAGLGGGSSDAAATLLALAQLYPAPVD---LPALALTLGADVPFF 136 (276)
T ss_pred HHhCC----------------CCCeEEEEEecCCCcCCCchHHHHHHHHHHHHHHHhCCChH---HHHHHHHhCCCcCee
Confidence 87764 35799999999999999999999999999999999998764 788888888899999
Q ss_pred hccCceeeeccccCCCCCeeEEEcccCCCCCceeEEEEEEcCCCcccCcHHHHHh
Q 025322 168 LFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRE 222 (254)
Q Consensus 168 ~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~vv~v~~~~~k~vsS~~gm~~ 222 (254)
++||+++.... + + ...+++ .+++.++ ++.+ ...+||.+.++.
T Consensus 137 ~~GG~~~~~g~-g---~--~~~~l~----~~~~~~v--v~~P-~~~~sT~~a~~~ 178 (276)
T PRK14612 137 LLGGAAEARGV-G---E--RLTPLE----LPPVPLV--LVNP-GVAVSARDAYRW 178 (276)
T ss_pred eeCCeEEEEec-C---c--cceEcC----CCCcEEE--EECC-CCCCCHHHHHHh
Confidence 99999864321 1 1 134442 2455544 4444 456777776653
No 21
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.72 E-value=5e-16 Score=141.61 Aligned_cols=176 Identities=16% Similarity=0.134 Sum_probs=119.3
Q ss_pred EEEEccceeeee-eccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCeeccC-CcchHHHHHHHHH
Q 025322 10 VTAQTPTNIAVI-KYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISL-GGGRYQNCLKEIR 87 (254)
Q Consensus 10 ~~a~ap~nIali-KYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~~~~-~~~~~~~vl~~~r 87 (254)
++..||+.|=|- .=-|||+.. .-.-+++-.+++ +|++++++..+ ..++..++...+. ..+.+.++++.++
T Consensus 4 ~~~~a~aKiNL~L~i~~~r~dg--yH~l~si~~~i~---l~d~v~v~~~~---~~~i~~~~~~~p~~~~nl~~~a~~~~~ 75 (287)
T PRK14616 4 ISVKAFAKINLGLLITGKRPDG--YHTLETIFAPIN---WYDTLTFSPSD---TISMSCTNLDLPVDDSNLCIRAAKALQ 75 (287)
T ss_pred eEEeeceeEEeeeecCCCCCCC--ccceeEEEEEcC---CCCEEEEEECC---CEEEEeCCCCCCCCccHHHHHHHHHHH
Confidence 455677766431 223777544 344567778886 89998887642 2444444332322 2345567777777
Q ss_pred HHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCCchhh
Q 025322 88 SRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRS 167 (254)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~~Gsa~~s 167 (254)
++++. ..+++|+++++||+++|||||||+++|++.|+++++|.+++.+++.++|.+++++++..
T Consensus 76 ~~~~~----------------~~~~~I~i~k~IP~~~GLGssSA~aaA~l~al~~l~g~~ls~~el~~~a~~ig~Dvp~~ 139 (287)
T PRK14616 76 EYAGV----------------SKGVSITLDKRVPFGAGLGGGSSDAATVLRVLNELWEINAPSADLHRLAVKLGADVPYF 139 (287)
T ss_pred HHhCC----------------CCCeEEEEEeCCCCcCCchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcceE
Confidence 77653 35899999999999999999999999999999999999999999999999999997555
Q ss_pred h-ccCceeeeccccCCCCCeeEEEcccCCCCCceeEEEEEEcCCCcccCcHHHHH
Q 025322 168 L-FGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMR 221 (254)
Q Consensus 168 ~-~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~vv~v~~~~~k~vsS~~gm~ 221 (254)
+ +||++. ..+.+ . ....+... +++. ++++.+ ...+||.+...
T Consensus 140 l~~gg~~~-~~g~g---~--~~~~~~~~---~~~~--~vvv~P-~~~vsT~~a~~ 182 (287)
T PRK14616 140 LEMKGLAY-ATGIG---D--ELEDLQLT---LPFH--IVTVFP-EEHISTVWAYK 182 (287)
T ss_pred eccCCcEE-EEEcC---c--eeEECCcC---CCcE--EEEECC-CCCcCHHHHHH
Confidence 5 588874 33321 1 12233211 3355 344444 46787776654
No 22
>PRK01123 shikimate kinase; Provisional
Probab=99.71 E-value=4.9e-16 Score=141.48 Aligned_cols=115 Identities=22% Similarity=0.273 Sum_probs=91.0
Q ss_pred EEeeCCCCceeEEEEEecCCCCCceEEecCeec--c-CCcchHHHHHHHHHHHccccccccccchhhcccccccceEEEE
Q 025322 40 SVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEI--S-LGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIAS 116 (254)
Q Consensus 40 sltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~~--~-~~~~~~~~vl~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ 116 (254)
+++|+ +|++++|+..+. .++++|+.. + .+.+.+.++++.+++.++. .++++|++
T Consensus 24 ~~~i~---l~~~v~v~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----------------~~~~~i~i 80 (282)
T PRK01123 24 AFGID---LKTTATVELSDD----GGGIEGEISGNPDADTRLIERCVELVLERFGI----------------DYGATVRT 80 (282)
T ss_pred EEEec---cEEEEEEEECCC----CceeeecccCCCCCCchHHHHHHHHHHHHhCC----------------CCCEEEEE
Confidence 56886 899999977542 233444321 1 1235677788888777654 35899999
Q ss_pred EcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhc--------cC---CchhhhccCceeeec
Q 025322 117 FNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQG--------SG---SACRSLFGGFVKWIL 177 (254)
Q Consensus 117 ~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~--------~G---sa~~s~~GG~v~~~~ 177 (254)
+++||.++|||||||+++|++.|++++++.+++.+++.++|.++ +| |+++|+|||++++.+
T Consensus 81 ~s~IP~~~GLGSSaA~~va~~~a~~~~~~~~l~~~el~~la~~~e~~~~~~~~g~~~d~~~~~~GG~~~~~~ 152 (282)
T PRK01123 81 KSEIPLASGLKSSSAAANATVLATLDALGEDLDDLDILRLGVKASRDAGVTVTGAFDDACASYFGGVTVTDN 152 (282)
T ss_pred ecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhccccccccCchhHHHHHHhCCEEEEcC
Confidence 99999999999999999999999999999999999999999884 44 788999999987653
No 23
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.71 E-value=4.4e-16 Score=142.71 Aligned_cols=174 Identities=11% Similarity=0.134 Sum_probs=122.9
Q ss_pred Eccceeeee-eccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCee-ccCCcchHHHHHHHHHHHc
Q 025322 13 QTPTNIAVI-KYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE-ISLGGGRYQNCLKEIRSRA 90 (254)
Q Consensus 13 ~ap~nIali-KYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~-~~~~~~~~~~vl~~~r~~~ 90 (254)
.||+.|=|- .=-|||+.. .-.-+|+=..++ ++++.+++..+. ..+.+.+.+ .+...+.+.++++.+++.+
T Consensus 4 ~apAKINL~L~V~gkR~DG--YH~l~sl~~~i~---l~D~l~i~~~~~---~~i~i~~~~~~~~~~Nlv~ra~~~l~~~~ 75 (288)
T PRK00650 4 FSPAKLNLFLQLLGKREDG--FHEIVTRYQAIA---FGDQLSLSISSR---DSLQVINACHLETPSNSIWKSVALFRRYT 75 (288)
T ss_pred cccceEEeeeccCCcCCCC--CcceeEEEEEcC---CCCEEEEEECCC---CcEEEeCCCCCCccccHHHHHHHHHHHHh
Confidence 455544432 445888664 344567766786 899888876432 234443222 2223567888888888887
Q ss_pred cccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCCchhhhcc
Q 025322 91 CDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFG 170 (254)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~~Gsa~~s~~G 170 (254)
+. ..+++|+++++||+++|||||||++||++.++|++++++++.+++.++|.+++++++.++.|
T Consensus 76 g~----------------~~~v~I~i~K~IP~gaGLGggSS~aAa~L~~ln~l~~~~ls~~eL~~lA~~lGaDvPffl~~ 139 (288)
T PRK00650 76 GI----------------TTPVSWRVVKQIPIGAGLAGGSSNAATALFALNQIFQTGLSDEELRSLAEKIGMDTPFFFST 139 (288)
T ss_pred CC----------------CCCeEEEEeeCCCCcCCcCcchhHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCcchhhhcC
Confidence 64 35899999999999999999999999999999999999999999999999999999777777
Q ss_pred CceeeeccccCCCCCeeEEEcccCCCCCceeEEEEEEcCCCcccCcHHHHHh
Q 025322 171 GFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRE 222 (254)
Q Consensus 171 G~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~vv~v~~~~~k~vsS~~gm~~ 222 (254)
|+++ ..+.++ ...+++. .++++++++++ ...+||.+.+..
T Consensus 140 g~a~-~~G~Ge-----~l~~~~~---~~~~~~vlv~P---~~~vsT~~ay~~ 179 (288)
T PRK00650 140 GSAL-GVGRGE-----KIIALEE---SVSDRYVLYFS---SEGVLTSRAFAY 179 (288)
T ss_pred ceEE-EEecCC-----EEEECcC---CCCceEEEEeC---CCCCChHHHHHh
Confidence 8764 333221 2333322 25566554443 466888888764
No 24
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]
Probab=99.70 E-value=9.3e-16 Score=141.62 Aligned_cols=142 Identities=20% Similarity=0.345 Sum_probs=109.6
Q ss_pred EEEccceeeeeeccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCeec--c-C----CcchHHHHH
Q 025322 11 TAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEI--S-L----GGGRYQNCL 83 (254)
Q Consensus 11 ~a~ap~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~~--~-~----~~~~~~~vl 83 (254)
+++||..+.| +|+|...|+-| +|+++++ ++.+++++.++ +.+++++.... . . ....+...+
T Consensus 2 ~~~aPgKliL---~GEHAVVyG~p---AI~~aI~---~~~~v~~~~s~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~v 69 (307)
T COG1577 2 SVSAPGKLIL---FGEHAVVYGYP---AIAAAID---LRVTVTISESD---SNKIVIESSDLKSSTLERDEDEGYIQAAV 69 (307)
T ss_pred cccccccEEE---EecceeeeCCc---hhheeee---eeEEEEEEecC---CCcEEEeccCCCCccccccccchHHHHHH
Confidence 5789999998 79999998666 9999997 78888887764 23455533211 1 1 113445567
Q ss_pred HHHHHHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhc---
Q 025322 84 KEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQG--- 160 (254)
Q Consensus 84 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~--- 160 (254)
+.+.+++.. -...++++++.+++|.++|||||||+.+|++.|++++||.+++.+++.++|.+.
T Consensus 70 ~~~~e~~~~--------------~~~~~~~l~I~S~iP~g~GLGSSAAVsva~i~al~~~~g~~ls~~~l~~la~~~e~~ 135 (307)
T COG1577 70 RLASELLNQ--------------SSLKPFSLEIDSEIPIGAGLGSSAAVSVAVIKALSAYFGVELSPEELAKLANKVELI 135 (307)
T ss_pred HHHHHHhcc--------------cCCCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 777666652 024689999999999999999999999999999999999999999999999765
Q ss_pred -cC-----CchhhhccCceeeecc
Q 025322 161 -SG-----SACRSLFGGFVKWILG 178 (254)
Q Consensus 161 -~G-----sa~~s~~GG~v~~~~~ 178 (254)
+| |.+=+++||++.+.++
T Consensus 136 vqG~~Sg~D~a~~~~gg~v~~~~~ 159 (307)
T COG1577 136 VQGKASGIDIATITYGGLVAFKKG 159 (307)
T ss_pred HcCCCCcccceEEEeCCEEEEecC
Confidence 23 5556999999977654
No 25
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase. Members of this family of GHMP kinases were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. It is now known, in tomato and E. coli, to encode 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.
Probab=99.69 E-value=3.3e-15 Score=136.93 Aligned_cols=181 Identities=15% Similarity=0.149 Sum_probs=123.9
Q ss_pred EEccceeeeeecc-ccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCeeccCCcchHHHHHHHHHHHc
Q 025322 12 AQTPTNIAVIKYW-GKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIRSRA 90 (254)
Q Consensus 12 a~ap~nIaliKYw-Gk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~~~~~~~~~~~vl~~~r~~~ 90 (254)
..||+.|=|+.-. |||+.. .-.-+|+-.+++ ++++++++..++ ...++..+....+...+.+.++++.+++.+
T Consensus 4 ~~apaKiNL~l~i~~~r~dG--yH~l~sl~~~i~---l~d~v~i~~~~~-~~i~~~~~~~~~~~~~nlv~~a~~~l~~~~ 77 (293)
T TIGR00154 4 FPSPAKLNLFLYITGKRPDG--YHELQTLMQFLD---LGDKIIISVRSD-DDIRLLKGDFDVPLEENLIYRAAQLLKNFA 77 (293)
T ss_pred EeecccEEEEEecCCcCCCC--CcceEEEEEEec---cCcEEEEEECCC-CcEEEeeCCCCCCCCCcHHHHHHHHHHHHh
Confidence 3567766665433 454444 333458888996 888888876532 122332222212222367778888888876
Q ss_pred cccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCCchhhhcc
Q 025322 91 CDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFG 170 (254)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~~Gsa~~s~~G 170 (254)
+... ....+++|+++++||+++|||||||.++|++.|++++++++++.+++.++|.++++|++.+++|
T Consensus 78 ~~~~------------~~~~~~~i~i~~~iP~~aGLGsssa~aaa~l~al~~~~~~~l~~~~l~~la~~lg~Dv~~~~~g 145 (293)
T TIGR00154 78 NSKI------------KSLDGANIEIDKNIPMGAGLGGGSSDAATVLVGLNQLWQLGLSLEELAELGLTLGADVPFFVSG 145 (293)
T ss_pred cccc------------cCCCCeEEEEeccCCCCCCcchhHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcceEEEC
Confidence 5200 0135799999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeccccCCCCCeeEEEcccCCCCCceeEEEEEEcCCCcccCcHHHHHh
Q 025322 171 GFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRE 222 (254)
Q Consensus 171 G~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~vv~v~~~~~k~vsS~~gm~~ 222 (254)
|+++.. +.++ ...+++. .+++. ++++.+ ...++|.+..+.
T Consensus 146 g~~~~~-g~ge-----~~~~l~~---~~~~~--~vl~~p-~~~~sT~~~~~~ 185 (293)
T TIGR00154 146 HAAFAT-GVGE-----IITPFED---PPEKW--VVIAKP-HVSISTPVVYQA 185 (293)
T ss_pred CeEEEE-ecCc-----EEEECCC---CCCcE--EEEEcC-CCCcChHHHHHh
Confidence 998533 3211 2334432 25566 445555 467877777654
No 26
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.69 E-value=3.5e-15 Score=135.80 Aligned_cols=179 Identities=16% Similarity=0.162 Sum_probs=125.1
Q ss_pred EEEEccceeeee-eccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCeeccC-CcchHHHHHHHHH
Q 025322 10 VTAQTPTNIAVI-KYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISL-GGGRYQNCLKEIR 87 (254)
Q Consensus 10 ~~a~ap~nIali-KYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~~~~-~~~~~~~vl~~~r 87 (254)
++..||+.|-|- +=.|||+..| -.-.|+=..++ ||++.+|+..+. ...++..++...+. +.+.+.++++.++
T Consensus 4 ~~~~apaKiNl~L~i~~~r~dgy--H~l~s~~~~i~---l~d~v~v~~~~~-~~~~i~~~~~~~p~~~~nl~~~a~~~~~ 77 (280)
T PRK14614 4 LTLKAPAKVNYRLDVLRRRPDGY--HDLRMIMQRVD---LCDEIEIALSDG-PGIRVTCGREGVPDGPGNIAWRAADALL 77 (280)
T ss_pred eEEeecceEEeeeccCCCCCCCc--ChhheEeEECC---CCeEEEEEECCC-CCEEEEeCCCCCCCCCCcHHHHHHHHHH
Confidence 455666666331 4458876553 33456656776 999999987542 12233323322322 3456777888888
Q ss_pred HHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCCchhh
Q 025322 88 SRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRS 167 (254)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~~Gsa~~s 167 (254)
+.++. ..+++|+++++||+++|||||||.++|++.|++++++.+++.+++.++|..+++|++.+
T Consensus 78 ~~~~~----------------~~~~~i~i~~~IP~~~GLGsssa~~~a~~~al~~~~~~~l~~~~l~~~a~~~G~Dv~~~ 141 (280)
T PRK14614 78 DLSGR----------------EVGIDISITKNIPVAAGLGGGSSDAATVLMGVNELLGLGLSDERLMEIGVKLGADVPFF 141 (280)
T ss_pred HHhCC----------------CCceEEEEEecCCCcCccHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCccee
Confidence 77654 35799999999999999999999999999999999999999999999999999999899
Q ss_pred hccCceeeeccccCCCCCeeEEEcccCCCCCceeEEEEEEcCCCcccCcHHHHHh
Q 025322 168 LFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRE 222 (254)
Q Consensus 168 ~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~vv~v~~~~~k~vsS~~gm~~ 222 (254)
++||+++.. +.+. ...+++. .++++ ++++++ ...++|.+.+++
T Consensus 142 l~gg~~~~~-g~ge-----~~~~l~~---~~~~~--ivl~~p-~~~~sT~~~~~~ 184 (280)
T PRK14614 142 IFKKTALAE-GIGD-----KLTAVEG---VPPLW--VVLVNP-GLHVSTAWVYQN 184 (280)
T ss_pred eeCCcEEEE-EcCc-----eeEECCC---CCCcE--EEEECC-CCCCCHHHHHhc
Confidence 999998633 2211 2334432 25666 445655 477888776553
No 27
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.68 E-value=5.2e-15 Score=134.39 Aligned_cols=177 Identities=13% Similarity=0.161 Sum_probs=124.1
Q ss_pred EEEEEccceeeeee-ccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCee--ccCCcchHHHHHHH
Q 025322 9 MVTAQTPTNIAVIK-YWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE--ISLGGGRYQNCLKE 85 (254)
Q Consensus 9 ~~~a~ap~nIaliK-YwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~--~~~~~~~~~~vl~~ 85 (254)
+++..||+.|=|-. =-|||+.. ...-+|+=.+++ +|++++++..++ ..+.+.+.. .+...+.+.++++.
T Consensus 6 ~~~~~apaKiNL~L~v~~~r~dG--yH~l~s~~~~i~---l~D~v~i~~~~~---~~~~i~~~~~~~~~~~N~v~~a~~~ 77 (271)
T PRK00343 6 LLDWPAPAKLNLFLHITGRRADG--YHELQTLFQFLD---WGDTLHFEVRDD---GEIRLLTPIPGVPEEDNLIVRAARL 77 (271)
T ss_pred eEEEeeeeeEEEEeecCCcCCCC--CCeeeEEEEEcc---cceEEEEEECCC---CcEEEeCCCCCCCCcccHHHHHHHH
Confidence 34556776665533 24777654 444568888996 899888876542 335554432 12234677888888
Q ss_pred HHHHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCCch
Q 025322 86 IRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSAC 165 (254)
Q Consensus 86 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~~Gsa~ 165 (254)
+++.++. ..+++|+++++||+++|||||||.++|++.|++++++++++.+++.++|.++++++
T Consensus 78 l~~~~~~----------------~~~~~i~i~k~IP~gaGLGssSs~aaa~l~al~~l~~~~ls~~el~~la~~igaDv- 140 (271)
T PRK00343 78 LQKATGT----------------PLGADISLDKRLPMGGGLGGGSSDAATTLVALNRLWQLGLSRDELAELGLKLGADV- 140 (271)
T ss_pred HHHHhCC----------------CCCeEEEEEcCCCCcCCCCcchHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-
Confidence 8887654 35899999999999999999999999999999999999999999999999998886
Q ss_pred hhhccCceeeeccccCCCCCeeEEEcccCCCCCceeEEEEEEcCCCcccCcHHHHHh
Q 025322 166 RSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRE 222 (254)
Q Consensus 166 ~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~vv~v~~~~~k~vsS~~gm~~ 222 (254)
+++++|.+.+..+.+. ...+++ .|...++ ++.+ ...++|.+.+.+
T Consensus 141 p~~l~g~~~~~~g~g~-----~~~~l~----~~~~~~v--l~~p-~~~~sT~~~~~~ 185 (271)
T PRK00343 141 PVFVRGHAAFAEGIGE-----ILTPVD----LPEKWYL--VVKP-GVHISTAEIFSD 185 (271)
T ss_pred eEEecCCcEEEEecCC-----EEEECC----CCCcEEE--EEeC-CCCcChHHHHhh
Confidence 5556665556555322 234443 2444433 4444 467888877664
No 28
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.65 E-value=2.2e-14 Score=130.22 Aligned_cols=175 Identities=15% Similarity=0.138 Sum_probs=123.7
Q ss_pred ccceeeeeeccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCeeccC--CcchHHHHHHHHHHHcc
Q 025322 14 TPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISL--GGGRYQNCLKEIRSRAC 91 (254)
Q Consensus 14 ap~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~~~~--~~~~~~~vl~~~r~~~~ 91 (254)
|-.|+.| .=-|||+.. ...-+|+=..++ |+++.+++..++ ...++.++|...+. ..+.+.++++.+++.++
T Consensus 7 aKiNL~L-~v~~~r~dG--yH~l~s~~~~i~---l~D~l~i~~~~~-~~~~~~~~~~~~~~~~~~Nlv~~a~~~~~~~~~ 79 (269)
T PRK14609 7 AKINLGL-NVVEKRPDG--YHNLETVFYPIP---LTDALEITVRSA-TKTSLTVSGIPIPGDPEDNLVVKAYNLLKKDFP 79 (269)
T ss_pred ccEEeee-ccCCcCCCC--cceeeEEEEECC---CCcEEEEEEcCC-CcEEEEeCCCCCCCCccccHHHHHHHHHHHHcC
Confidence 3345554 445777664 334556766776 899888876443 23567778865542 24677788888887665
Q ss_pred ccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCCchhhhccC
Q 025322 92 DVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGG 171 (254)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~~Gsa~~s~~GG 171 (254)
. .+++|+++++||+++|||||||+++|++.|++++++++++.+++.++|..+..+++.+++||
T Consensus 80 ~-----------------~~~~i~i~k~IP~~aGLGssss~aaa~l~al~~~~~~~l~~~~l~~la~~iGaDvpffl~g~ 142 (269)
T PRK14609 80 L-----------------PPVHIHLYKHIPIGAGLGGGSSDAAFMLKLLNDKFNLGLSDEELEAYAATLGADCAFFIRNK 142 (269)
T ss_pred C-----------------CCeEEEEecCCCCCCcccHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCceEEccCC
Confidence 2 37999999999999999999999999999999999999999999999999987886777888
Q ss_pred ceeeeccccCCCCCeeEEEcccCCCCCceeEEEEEEcCCCcccCcHHHHHhH
Q 025322 172 FVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRES 223 (254)
Q Consensus 172 ~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~vv~v~~~~~k~vsS~~gm~~~ 223 (254)
.+... +.++ ...+++. ..++++ ++++.+ ...+||.+..+..
T Consensus 143 ~a~~~-G~Ge-----~l~~l~~--~~~~~~--~vlv~P-~~~~sT~~a~~~l 183 (269)
T PRK14609 143 PVYAT-GIGD-----IFSPIDL--SLSGYY--IALVKP-DIHVSTAEAYAGI 183 (269)
T ss_pred CEEEE-EeCC-----eeEECCC--CCCCCE--EEEECC-CCCCChHHHHHhh
Confidence 86433 3211 1333421 125566 344545 5778888877644
No 29
>TIGR00549 mevalon_kin mevalonate kinase. Paracoccus exhibits two genes within the phosphomevalonate/mevalonate kinase family, one of which falls between trusted and noise cutoffs of this model. The degree of divergence is high, but if the trees created from this model are correct, the proper names of these genes have been swapped.
Probab=99.64 E-value=2.8e-14 Score=128.07 Aligned_cols=170 Identities=22% Similarity=0.234 Sum_probs=109.2
Q ss_pred ccceeeeeeccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCeeccC--Cc---chHHHHHHHHHH
Q 025322 14 TPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISL--GG---GRYQNCLKEIRS 88 (254)
Q Consensus 14 ap~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~~~~--~~---~~~~~vl~~~r~ 88 (254)
||..+-| .|+|-..+..| .|.++++ .|+++.+...++ ...+..+...... .. +.....++....
T Consensus 1 aPgkv~L---~GEH~v~~g~~---al~~aI~---~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~l~ 69 (273)
T TIGR00549 1 APGKIIL---FGEHAVVYGEP---AIAAPIP---LRTTVTVIESSD--GSFIESDLGRGSLDDAPQELDGLVSYIAEALS 69 (273)
T ss_pred CCceEEE---EecChhccCCC---eeEEEec---ccEEEEEEEcCC--CceEeccccCCcHhHhhHHHHHHHHHHHHHHH
Confidence 5777777 59998887666 9999998 577777755432 1223333221110 00 111112222222
Q ss_pred HccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcc-------
Q 025322 89 RACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGS------- 161 (254)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~~------- 161 (254)
.+.. ....+++|+++++||.++|||||||.++|++.|++++++.+++.+++.++|+.+|
T Consensus 70 ~~~~--------------~~~~~~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~l~~~a~~~E~~~~G~~ 135 (273)
T TIGR00549 70 YFSE--------------LNPPPLEIEIDSEIPPGRGLGSSAAVAVALIRALADYFGSELSKEELAKLANEAEKIAHGKP 135 (273)
T ss_pred Hhhc--------------cCCCCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCC
Confidence 2221 0112499999999999999999999999999999999999999999999998764
Q ss_pred -C-CchhhhccCceeeeccccCCCCCeeEEEcccCCCCCceeEEEEEEcCCCcccCcHHHHH
Q 025322 162 -G-SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMR 221 (254)
Q Consensus 162 -G-sa~~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~vv~v~~~~~k~vsS~~gm~ 221 (254)
| |.++++|||++.++.+.. ..++..+ ++++ +++++++ ++.+|.+..+
T Consensus 136 sG~D~~~~~~Gg~~~~~~~~~-------~~~~~~~---~~~~--lvl~~tg-~~~~T~~~~~ 184 (273)
T TIGR00549 136 SGIDTATSTYGGPVYFEKGEG-------EFTKLIS---LDGY--FVIADTG-VSGSTKEAVA 184 (273)
T ss_pred chHhHHHHhcCCeEEEEcCCC-------ceeeccC---CCeE--EEEEECC-CCCcHHHHHH
Confidence 4 677899999997764421 1122211 3344 5567763 5566655443
No 30
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents the low GC Gram-positive organism forms of the ERG8 type of phosphomevalonate kinase.
Probab=99.63 E-value=5.2e-14 Score=132.41 Aligned_cols=212 Identities=17% Similarity=0.144 Sum_probs=135.0
Q ss_pred EEEccceeeeeeccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCe------------ec--cC--
Q 025322 11 TAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGK------------EI--SL-- 74 (254)
Q Consensus 11 ~a~ap~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~------------~~--~~-- 74 (254)
.++||..+-| .|.|-.. .|++..|.++++ .+++++++..++. ..++..+.. .. ..
T Consensus 2 ~~~APGKl~L---~GEhavv--~~G~pAl~~aI~---~~~~v~i~~~~~~-~~~i~s~~~~~~~~~~~~~~~~~~~~~~~ 72 (358)
T TIGR01220 2 VVHAPGKLFV---AGEYAVV--EPGNPAILVAVD---RFVTVTVEDADGA-ADVIISSDLGPQPVGWRRHDGRLVVRDPD 72 (358)
T ss_pred eeecceeEEE---eeeEEEe--cCCCeEEEEEEc---CcEEEEEEeCCCC-ceEEEecCCCCCceEEEecCCceeecccc
Confidence 5679999998 5999876 577779999998 5777777654421 112211110 00 00
Q ss_pred ---CcchHHHHHHHHHHHccccccccccchhhcccccccceEEEEEcCCCCC----CccccchhhHHHHHHHHHHHhCCC
Q 025322 75 ---GGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTA----AGLASSAAGFACLVFSLAKLMNLK 147 (254)
Q Consensus 75 ---~~~~~~~vl~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~----~GLgSSaA~~aA~~~A~~~l~~~~ 147 (254)
..+.+..+++.+++++...+ ...+++++++.+++|.+ +|||||||..+|++.|+++++|.+
T Consensus 73 ~~~~~~~v~~~i~~~~~~~~~~~------------~~~~g~~~~i~s~ip~~~g~k~GLGSSAA~~Va~~~Al~~~~~~~ 140 (358)
T TIGR01220 73 ARSALAYVVSAIETVERYAGERN------------QKLPALHLSVSSRLDEADGRKYGLGSSGAVTVATVKALNAFYDLE 140 (358)
T ss_pred cccchHHHHHHHHHHHHHHHhcC------------CCCCceEEEEecCCCCcCCCCCCccHHHHHHHHHHHHHHHHhCCC
Confidence 11234556666655554211 11347999999999995 699999999999999999999999
Q ss_pred CCHHHHHHHHHhc--------c-CCchhhhccCceeeeccccC-----------------CCCCeeEEEcccCCCCCcee
Q 025322 148 ENQSQLSAIARQG--------S-GSACRSLFGGFVKWILGKEG-----------------NGSDSLAVQLVDEEHWNDLV 201 (254)
Q Consensus 148 l~~~el~~iA~~~--------~-Gsa~~s~~GG~v~~~~~~~~-----------------~~~~~~~~~l~~~~~~~~l~ 201 (254)
++.+++.++|..+ + +|.+.|+|||++.+.+.... +-.....++++.+ ++++
T Consensus 141 l~~~~l~~lA~~~E~~~~g~~sg~D~~a~~~GG~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~---~~~~ 217 (358)
T TIGR01220 141 LSNDEIFKLAMLATAELQPKGSCGDIAASTYGGWIAYSTFDHDWVLQLARRVGVDRTLKAPWPGLSIRPLPAP---KGLT 217 (358)
T ss_pred CCHHHHHHHHHHHHhhhCCCCCcchhhhhhhCCEEEEecCCHHHHhhhhhccchhhhhccCCCccceeECCCC---CCCE
Confidence 9999999999653 2 37789999999866432100 0001113344322 3466
Q ss_pred EEEEEEcCCCcccCcHHHHHhH----hhcCccHHHHHHHHHhhHHHHHHhhc
Q 025322 202 IIIAVVSSRQKETSSTTGMRES----VETSLLLQHRAKVQFLILSDCLEDIG 249 (254)
Q Consensus 202 ~vv~v~~~~~k~vsS~~gm~~~----v~ts~~~~~r~~~~~~~~~~~~e~~~ 249 (254)
+++.+.+ ++-+|++.++.. .+..++|+..++...+...+++++|.
T Consensus 218 --l~v~~tg-~~~~T~~~v~~V~~~~~~~~~~~~~~l~~~~~i~~~~~~al~ 266 (358)
T TIGR01220 218 --LLIGWTG-SPASTASLVSDVHRRKWRGSASYQRFLETSTDCVESAITAFE 266 (358)
T ss_pred --EEEEeCC-CCcCcHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566764 455566655433 12234566777777777777766654
No 31
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.63 E-value=1.6e-14 Score=131.96 Aligned_cols=180 Identities=16% Similarity=0.166 Sum_probs=126.6
Q ss_pred EEEEEccceeeee-eccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCee-ccCCcchHHHHHHHH
Q 025322 9 MVTAQTPTNIAVI-KYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE-ISLGGGRYQNCLKEI 86 (254)
Q Consensus 9 ~~~a~ap~nIali-KYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~-~~~~~~~~~~vl~~~ 86 (254)
.++..||+.|=|- .=-|||+.. ...-+|+=++++ +|++.+++..+. ...+.+.+.. .+.+.+.+.++++.+
T Consensus 3 ~~~~~apAKINL~L~v~g~r~dG--yH~l~s~~~~i~---l~D~l~i~~~~~--~~~~~~~~~~~~~~~~Nlv~kA~~~l 75 (283)
T PRK14610 3 KFLVKAPAKINLFLHIVGKSESG--YHLLESLFVFVN---LYDFLEIKIGSK--NRGVEFVNSLKINRYNNTVQRAIGLL 75 (283)
T ss_pred ceEEeecceEEeeeccCCcCCCC--cchhheeeEEcC---CCCEEEEEECCC--CCeEEEeCCCCCCCCCcHHHHHHHHH
Confidence 3566677766553 334777554 444567767886 899999876532 1246665542 222346677888888
Q ss_pred HHHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCCchh
Q 025322 87 RSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACR 166 (254)
Q Consensus 87 r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~~Gsa~~ 166 (254)
++.++. .++++|+++++||+++|||||||++||++.++|++++ ++.+++.++|..+.-|++.
T Consensus 76 ~~~~~~----------------~~g~~i~i~K~IP~~aGLGggSs~aaa~L~~ln~l~~--ls~~~l~~ia~~lGaDvPf 137 (283)
T PRK14610 76 LRHSPV----------------RTNVYVKVIKNIPVSAGLAGGSADAAAVIRLLGKLWG--IDEQILNELALSVGSDVPA 137 (283)
T ss_pred HHHhCC----------------CCCeEEEEEcCCCCCCcCCccHHHHHHHHHHHHHHhC--CCHHHHHHHHHHhCCCCcE
Confidence 877664 3589999999999999999999999999999999996 7999999999999889999
Q ss_pred hhccCceeeeccccCCCCCeeEEEcccCCCCCceeEEEEEEcCCCcccCcHHHHHhH
Q 025322 167 SLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRES 223 (254)
Q Consensus 167 s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~vv~v~~~~~k~vsS~~gm~~~ 223 (254)
+++||.+ |..+.++ ...++++. .++.. ++++.+....+||.+.+...
T Consensus 138 fl~g~~a-~~~G~Ge-----~l~~l~~~--~~~~~--~vl~~p~~~~~sT~~vy~~~ 184 (283)
T PRK14610 138 CLDSKTL-FVRGIGE-----DILLLPDL--SLPTY--VVLVAPKGKFLSTRKVFNKY 184 (283)
T ss_pred EEECCeE-EEEeccc-----EEEECccc--CCCCe--EEEEECCCCccChHHHHHhh
Confidence 9999997 6666432 23333211 12233 33333435679999998753
No 32
>TIGR01920 Shik_kin_archae shikimate kinase. This model represents the shikimate kinase (SK) gene found in archaea which is only distantly related to homoserine kinase (thrB) and not atr all to the bacterial SK enzyme. The SK from M. janaschii has been overexpressed in E. coli and characterized. SK catalyzes the fifth step of the biosynthesis of chorismate from D-erythrose-4-phosphate and phosphoenolpyruvate.
Probab=99.62 E-value=1.6e-14 Score=130.45 Aligned_cols=113 Identities=21% Similarity=0.188 Sum_probs=87.5
Q ss_pred EEeeCCCCceeEEEEEecCCCCCceEEecCeeccCCcchHHHHHHHHHHHccccccccccchhhcccccccceEEEEEcC
Q 025322 40 SVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNN 119 (254)
Q Consensus 40 sltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~~~~~~~~~~~vl~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~ 119 (254)
.++++ ++++++|+..++ .++.+... . ..+.+.++++.+++.++. .++++|+++++
T Consensus 18 a~aI~---~~~~v~v~~~~~---~~~~~~~~--~-~~n~i~~~~~~~~~~~~~----------------~~g~~i~i~s~ 72 (261)
T TIGR01920 18 AFGID---LWVEAKVREGDE---AGVSTYVR--G-NPRLIERILTAIRSKFGI----------------VDGLEVEVESE 72 (261)
T ss_pred EEEcc---CceEEEEEECCC---Cceeeeec--C-ChHHHHHHHHHHHHhcCC----------------CCCEEEEEecC
Confidence 45665 788888877542 22322111 1 135677788888887653 35899999999
Q ss_pred CCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcc--------C---CchhhhccCceeeec
Q 025322 120 FPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGS--------G---SACRSLFGGFVKWIL 177 (254)
Q Consensus 120 iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~~--------G---sa~~s~~GG~v~~~~ 177 (254)
||.++|||||||.++|++.|++++++++++.+++.+++.+++ | |++.++|||+++.+.
T Consensus 73 iP~~~GLGSSaA~~~a~~~al~~~~~~~l~~~~l~~la~~~e~~~~~~~~~~~~D~~~~~~gG~~~~~~ 141 (261)
T TIGR01920 73 IPAGSGLKSSSALVNALVEAVLKAKGVEIDDIDILRLGARLSKDAGLSVTGAFDDAAASYLGGIVITDN 141 (261)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHhCCEEEEeC
Confidence 999999999999999999999999999999999999998743 2 567899999986543
No 33
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.59 E-value=9.5e-14 Score=125.49 Aligned_cols=179 Identities=16% Similarity=0.152 Sum_probs=121.1
Q ss_pred Eccceeeee-eccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCee-ccCCcchHHHHHHHHHHH-
Q 025322 13 QTPTNIAVI-KYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE-ISLGGGRYQNCLKEIRSR- 89 (254)
Q Consensus 13 ~ap~nIali-KYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~-~~~~~~~~~~vl~~~r~~- 89 (254)
.||+.|=|- .=-||| . ....-+|+=..+. +||++.+++... ...+.+.|.. .+.+.+.+.++++.+++.
T Consensus 4 ~apaKINL~L~v~~kr-d--GyH~l~s~~~~i~--~l~D~l~i~~~~---~~~~~i~~~~~~p~~~NLv~kA~~~l~~~~ 75 (257)
T PRK04181 4 KAYAKVNIFLKILGKR-G--NYHELISRFVLVK--DLFDEIEFVPKS---AESFELIGNFDCPLEENIIYKAYQELKNKG 75 (257)
T ss_pred cccceEEEEEeeCcCC-C--CCceeheeeeEcc--CcCcEEEEEECC---CCCEEEEcCCCCCCCCcHHHHHHHHHHHhc
Confidence 455554442 335777 3 3444557766772 289988887632 1235554432 212346677777777763
Q ss_pred ccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCCchhhhc
Q 025322 90 ACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLF 169 (254)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~~Gsa~~s~~ 169 (254)
++.. +. ....+++|+++++||+++|||||||++||++.++|++++.+++.+++.++|.++..|+..+++
T Consensus 76 ~~~~--------~~---~~~~gv~I~i~K~IP~gaGLGggSSdAAA~L~aln~l~~~~ls~~eL~~lA~~lGaDvPffl~ 144 (257)
T PRK04181 76 FSNE--------LI---EFFKKKAIEVEKNIPTGAGLGGGSSDAATFLLMLNEILNLKLSLEELAEIGSKVGADVAFFIS 144 (257)
T ss_pred cccc--------cc---cCCCceEEEEEeCCCCcCcccccHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCccEEec
Confidence 3310 00 001479999999999999999999999999999999999999999999999999999999999
Q ss_pred c-CceeeeccccCCCCCeeEEEcccCCCCCceeEEEEEEcCCCcccCcHHHHHhH
Q 025322 170 G-GFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRES 223 (254)
Q Consensus 170 G-G~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~vv~v~~~~~k~vsS~~gm~~~ 223 (254)
| |.+ +..|.++ ...+++. .+ .. ++++.+ ...+||.+.+.+.
T Consensus 145 ~~~~a-~~~G~Ge-----~l~~l~~---~~-~~--~~lv~P-~~~vsT~~vy~~~ 186 (257)
T PRK04181 145 GYKSA-NVSGIGE-----IVEEFEE---EI-LN--LEIFTP-NIFCSTKAVYKAY 186 (257)
T ss_pred CCceE-EEEeeCC-----eeEECCC---CC-Ce--EEEECC-CCCcCHHHHHHHH
Confidence 9 655 5555432 2344421 12 23 345555 6889999998753
No 34
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]
Probab=99.58 E-value=1.2e-13 Score=126.35 Aligned_cols=176 Identities=17% Similarity=0.150 Sum_probs=128.6
Q ss_pred EEEEccceeeee-eccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCee---ccCCcchHHHHHHH
Q 025322 10 VTAQTPTNIAVI-KYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE---ISLGGGRYQNCLKE 85 (254)
Q Consensus 10 ~~a~ap~nIali-KYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~---~~~~~~~~~~vl~~ 85 (254)
.+..||+.|=|- +=-|||+..|. --.|+=..++ ++++.+++..+ .+.+.+.|.+ ++.+.+.+.++.+.
T Consensus 4 ~~~~apAKiNL~L~V~gkr~DGYH--el~sl~~~id---~~D~l~i~~~~---~~~~~~~~~~~~~lp~~~NLv~rAa~l 75 (289)
T COG1947 4 TKFPAPAKINLFLHVTGKRADGYH--ELETLFQFID---LGDELTIRPRD---DDGFIVLGTFADGLPTDENLVYRAAEL 75 (289)
T ss_pred eEeeccceEEEEEEecccCCCCce--eeEEEEEEec---cCCEEEEEECC---CCCceEecCCCCCCCCcchHHHHHHHH
Confidence 455666655442 44677776533 3445555776 88988888754 2445555542 23233667788888
Q ss_pred HHHHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCCch
Q 025322 86 IRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSAC 165 (254)
Q Consensus 86 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~~Gsa~ 165 (254)
+++.++. ..++.|.++++||+++|||++||.++|++.++|++++.+++.+||..++.++..|++
T Consensus 76 l~~~~~~----------------~~~v~I~l~K~IPv~aGLGGGSSdAAa~L~~Ln~lw~~~ls~~eL~~Lg~~LGaDVP 139 (289)
T COG1947 76 LRKRTGI----------------AGGVSIHLDKNIPVGAGLGGGSSDAAAVLVALNELWGLGLSLEELAELGLRLGADVP 139 (289)
T ss_pred HHHHhCC----------------CCCeeEEEEecCcccCcCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcC
Confidence 8888774 468999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCceeeeccccCCCCCeeEEEcccCCCCCceeEEEEEEcCCCcccCcHHHHH
Q 025322 166 RSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMR 221 (254)
Q Consensus 166 ~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~vv~v~~~~~k~vsS~~gm~ 221 (254)
.+++||..... +. .+++.+.+..|..+ ++++.+ ...+||.+.++
T Consensus 140 ffl~g~tA~a~-G~--------GE~l~~~~~~~~~~--~vl~~P-~v~vsT~~vy~ 183 (289)
T COG1947 140 FFLSGGTAFAE-GR--------GEKLEPLEDPPEKW--YVLAKP-GVGVSTKEVYK 183 (289)
T ss_pred eeeeCCceEEE-Ec--------cceeeECCCCCCce--EEEEeC-CCCCChHHHHc
Confidence 99999987533 32 23343332346666 445555 67899988877
No 35
>PRK05905 hypothetical protein; Provisional
Probab=99.55 E-value=3.5e-13 Score=121.95 Aligned_cols=174 Identities=15% Similarity=0.127 Sum_probs=120.5
Q ss_pred ccceeeeeecccccc-ccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCee--ccCCcchHH-HHHHHHHHH
Q 025322 14 TPTNIAVIKYWGKRD-ETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE--ISLGGGRYQ-NCLKEIRSR 89 (254)
Q Consensus 14 ap~nIaliKYwGk~d-~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~--~~~~~~~~~-~vl~~~r~~ 89 (254)
|-.|+.| .=-|||+ .. ...-+|+=..+. +|+++.+++..+. ....+.+.+.. .....+.+. ++++.+++.
T Consensus 7 AKINL~L-~I~gkR~DdG--YHel~sv~~~i~--~l~D~l~i~~~~~-~~~~i~~~~~~~~~~~~~nli~~ka~~~l~~~ 80 (258)
T PRK05905 7 AKINLGL-SIYKKCKKVT--KHKLESIFILVE--NVYDDIEIEKIEK-NIDDIHYFDETNEILVYSRLILVKTLEWLRDK 80 (258)
T ss_pred ceEEeee-eecccCCCCC--CcceeEEEEEcc--ccccEEEEEECCC-CCceEEEeCCCcCCCCCcchHHHHHHHHHHHH
Confidence 3344454 3358876 34 333456666772 2889888876432 11235553321 112245666 788888887
Q ss_pred ccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCCchhhhc
Q 025322 90 ACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLF 169 (254)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~~Gsa~~s~~ 169 (254)
++. .++++|+++++||+++|||||||.+||++.++|++++ ++.+++.++|.++..|+..+++
T Consensus 81 ~~~----------------~~~~~i~l~K~IP~~aGLGggSSDAAa~L~~Ln~l~~--ls~~~L~~ia~~lGADVPFfl~ 142 (258)
T PRK05905 81 YNI----------------KNHFKIKIKKRIPIGSGLGSGSSNAAVLMKWILEFEG--INEINYKDVVNKLGSDIPFFLS 142 (258)
T ss_pred hCC----------------CCCeEEEEEeCCCCcCCCCCCchHHHHHHHHHHHHhC--CCHHHHHHHHHHhCCCcceEEe
Confidence 764 3579999999999999999999999999999999997 7899999999999999999999
Q ss_pred c-CceeeeccccCCCCCeeEEEcccCCCCCceeEEEEEEcCCCcccCcHHHHHhH
Q 025322 170 G-GFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRES 223 (254)
Q Consensus 170 G-G~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~vv~v~~~~~k~vsS~~gm~~~ 223 (254)
| |.+ +..|.++ ..++++. .+... ++++.+ ...+||.+.+++.
T Consensus 143 g~~~a-~~~G~GE-----~l~pl~~---~~~~~--~vlv~P-~~~vST~~vY~~~ 185 (258)
T PRK05905 143 GYKTA-YISDYGS-----QVEDLIG---QFKLT--YKVIFM-NVNVSTKKVFEKF 185 (258)
T ss_pred CCccE-EEEeeCc-----eeEECCC---CCCce--EEEECC-CCCCCHHHHHHhh
Confidence 9 776 5555432 2344421 12344 445555 5889999998754
No 36
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.50 E-value=1.1e-12 Score=120.65 Aligned_cols=170 Identities=12% Similarity=0.118 Sum_probs=108.3
Q ss_pred ceeeeeeccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCee----------c----cCCcchHHH
Q 025322 16 TNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE----------I----SLGGGRYQN 81 (254)
Q Consensus 16 ~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~----------~----~~~~~~~~~ 81 (254)
.|..| .=-|||... ...-+|+=.+++ |+++.+++..+. ...++..+... + +.+.+.+.+
T Consensus 7 INL~L-~I~gkr~dG--yH~l~s~~~~i~---l~D~l~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Nlv~k 79 (297)
T PRK14613 7 INLGL-EIPFKREDG--FHEIRSVFLKIS---WGDDIEIEPAPN-GVFELFSTNEIILEKRKLYDQVSERGDIKQNILYK 79 (297)
T ss_pred Eeeee-cCCCcCCCC--cceeeeEEEEec---cCCEEEEEECCC-CcEEEEecccccccccccccccCCCCCcccchHHH
Confidence 34444 345777554 334456666775 889888875432 11223222221 1 123466778
Q ss_pred HHHHHHHHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcc
Q 025322 82 CLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGS 161 (254)
Q Consensus 82 vl~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~~ 161 (254)
+++.+++.++. ..+++|+++++||+++|||||||++++++.+++.++++ ...+++.++|.+++
T Consensus 80 a~~~~~~~~~~----------------~~~v~I~i~K~IP~~aGLGggSs~Aaa~l~~l~~~~~l-~~~e~L~~lA~~lG 142 (297)
T PRK14613 80 TFIKARSLFPE----------------LPGVKIHLTKRISPAGGLGGGSTNAASLLNFLFSWRNF-FTSDEMQVFAKEIG 142 (297)
T ss_pred HHHHHHHHhCC----------------CCCeEEEEEeCCCccCCccccHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHhC
Confidence 88888877654 35899999999999999999999998888888876554 23467777999998
Q ss_pred CCchhhhccCceeeeccccCCCCCeeEEEcccCCCCCceeEEEEEEcCCCcccCcHHHHHh
Q 025322 162 GSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRE 222 (254)
Q Consensus 162 Gsa~~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~vv~v~~~~~k~vsS~~gm~~ 222 (254)
+++ |+++||.+.|..+.+. ...+++. |....++++ | ...++|.+....
T Consensus 143 aDv-P~~l~G~~a~~~g~Ge-----~~~~l~~----~~~~~vlv~--P-~~~vsT~~a~~~ 190 (297)
T PRK14613 143 SDV-PFFLGEGHAFVTGKGE-----IMEEIEV----HKGQGILAL--T-PQVMNTGEMYAL 190 (297)
T ss_pred Ccc-chhhcCCeEEEecCCc-----EEEEcCC----CCCeEEEEE--C-CCCcChHHHHHh
Confidence 875 6666666777666422 2445432 322233333 3 466888887653
No 37
>PLN02677 mevalonate kinase
Probab=99.48 E-value=3.9e-12 Score=121.13 Aligned_cols=219 Identities=20% Similarity=0.190 Sum_probs=128.1
Q ss_pred EEEEEccceeeeeeccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCC-CCceEEecC-----------eec----
Q 025322 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSF-DQDRMWLNG-----------KEI---- 72 (254)
Q Consensus 9 ~~~a~ap~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~-~~~~i~lnG-----------~~~---- 72 (254)
.+.++||..+-| +|.|-..+..| .|.++++ +|+++.++..+.. +...+.++- ...
T Consensus 2 ~i~v~apgk~~l---~Geh~~~~g~~---a~~~ai~---~~~~~~~~~~~~~~~~~~i~~~~~di~~~~~~~~~~l~~~~ 72 (387)
T PLN02677 2 EVKARAPGKIIL---AGEHAVVHGST---AVAAAID---LYTYVSLRFPPSAENDDTLKLQLKDLGLEFSWPLARIKEAL 72 (387)
T ss_pred ceEEeCCccEEE---eeeeeeecCCe---eeeeEee---ceEEEEEEecCCCCCCCeEEEEcCCCCceEEechHhhhhhh
Confidence 367889999998 59998876554 9999997 8998888753210 122332211 100
Q ss_pred --------cCCcchHHHHHHHHHHHcccccccc--c----c---chhhcccc-cccceEEEEEcCCCCCCccccchhhHH
Q 025322 73 --------SLGGGRYQNCLKEIRSRACDVEDTE--K----G---IKIEKKDW-QKLHLHIASFNNFPTAAGLASSAAGFA 134 (254)
Q Consensus 73 --------~~~~~~~~~vl~~~r~~~~~~~~~~--~----~---~~~~~~~~-~~~~~~I~~~~~iP~~~GLgSSaA~~a 134 (254)
+.....+...++.+.++........ . + ++.--..+ ...+++|.++++||.|+|||||||..+
T Consensus 73 ~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~flyl~~~~~~~~~~~i~I~S~lP~GaGLGSSAAv~V 152 (387)
T PLN02677 73 PDLGTPCPSTPTSCSEETLKSIAALVEEQNIPEAKIWLSSGVSAFLWLYTSILGFNPATVVVTSELPLGSGLGSSAAFCV 152 (387)
T ss_pred ccccccccccccccCHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHHhccCCCeEEEEEccCCCCCCccHHHHHHH
Confidence 0000122334455555443210000 0 0 00000000 134689999999999999999999999
Q ss_pred HHHHHHHHHhC-CCC----------CH---HHHHHHHHhc--------cC-CchhhhccCceeeeccccCCCCCeeEEEc
Q 025322 135 CLVFSLAKLMN-LKE----------NQ---SQLSAIARQG--------SG-SACRSLFGGFVKWILGKEGNGSDSLAVQL 191 (254)
Q Consensus 135 A~~~A~~~l~~-~~l----------~~---~el~~iA~~~--------~G-sa~~s~~GG~v~~~~~~~~~~~~~~~~~l 191 (254)
|++.|+..+++ +++ +. +++.++|..+ || |.+.+.|||++.+.++. ..++
T Consensus 153 a~~~AL~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~A~~~E~~~hG~pSGiD~a~s~~Gg~I~f~~~~--------~~~l 224 (387)
T PLN02677 153 ALSAALLAASDSISVSTGGNGWSSLDETDLELVNKWAFEGEKIIHGKPSGIDNTVSTYGNMIKFKSGE--------LTRL 224 (387)
T ss_pred HHHHHHHHHhCCcccccccccccccChhHHHHHHHHHHHHHHHHhCCCCchhHHHHhcCCeEEEcCCC--------ceec
Confidence 99999999998 333 22 4666777544 33 66789999998765542 2344
Q ss_pred ccCCCCCceeEEEEEEcCCCcccCcHHHHHhHhh----cCccHHHHHHHHHhhHHHHHHhhcc
Q 025322 192 VDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVE----TSLLLQHRAKVQFLILSDCLEDIGS 250 (254)
Q Consensus 192 ~~~~~~~~l~~vv~v~~~~~k~vsS~~gm~~~v~----ts~~~~~r~~~~~~~~~~~~e~~~~ 250 (254)
+.+ ++++ ++|.+-+ .+-+|.+-.+++.+ ....|+.-++...+...++++.+..
T Consensus 225 ~~~---~~l~--llv~dTg-v~~sT~~lV~~V~~~~~~~p~~~~~il~~~~~i~~~a~~al~~ 281 (387)
T PLN02677 225 QSN---MPLK--MLITNTR-VGRNTKALVAGVSERALRHPDAMKSVFNAVDSISEELATIIQS 281 (387)
T ss_pred CCC---CCce--EEEEECC-CCCcHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 322 4466 6688864 44444444333311 1234455566666666666666654
No 38
>PRK03817 galactokinase; Provisional
Probab=99.44 E-value=7.8e-12 Score=116.95 Aligned_cols=126 Identities=16% Similarity=0.186 Sum_probs=89.3
Q ss_pred EEEEccceeeeeeccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCee------c---cCC---cc
Q 025322 10 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE------I---SLG---GG 77 (254)
Q Consensus 10 ~~a~ap~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~------~---~~~---~~ 77 (254)
+.++||..|-| .|.|-..+..+ .|+++++ .|+.++++..+ ..++...+-. . ... .+
T Consensus 1 ~~~~APgrv~L---~Geh~d~~~g~---~l~~aI~---~~~~v~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 68 (351)
T PRK03817 1 MKVKSPGRVNL---IGEHTDYNDGY---VLPFAIN---LYTFLEIEKSE---KFIFYSENFNEEKTFELDKLEKLNSWAD 68 (351)
T ss_pred CEEEeeeeEEE---eccceeeCCCe---EEEEEec---CcEEEEEEeCC---eEEEEECCCCCcEEEeCCccCCCCchHH
Confidence 35789999998 58887655555 8999997 67877775532 2222222110 0 000 12
Q ss_pred hHHHHHHHHHHHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHH
Q 025322 78 RYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIA 157 (254)
Q Consensus 78 ~~~~vl~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA 157 (254)
.+..++..+++. +. ...+++|+++++||+++|||||||.++|++.|+++++|.+++.+++.++|
T Consensus 69 ~~~~~~~~~~~~-~~---------------~~~~~~i~i~s~iP~~~GLgSSaa~~va~~~al~~~~~~~~~~~~l~~~a 132 (351)
T PRK03817 69 YIKGVIWVLEKR-GY---------------EVGGVKGKVSSNLPIGAGLSSSASLEVAVAYALNEAYNLNLSKLELALLA 132 (351)
T ss_pred HHHHHHHHHHHc-CC---------------CCCCeEEEEeCCCCCCCCcCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 333344443321 11 13589999999999999999999999999999999999999999999999
Q ss_pred HhccCC
Q 025322 158 RQGSGS 163 (254)
Q Consensus 158 ~~~~Gs 163 (254)
.+++..
T Consensus 133 ~~~E~~ 138 (351)
T PRK03817 133 REAENE 138 (351)
T ss_pred HHhccc
Confidence 999763
No 39
>PRK05101 galactokinase; Provisional
Probab=99.43 E-value=7.4e-12 Score=118.80 Aligned_cols=136 Identities=18% Similarity=0.162 Sum_probs=99.2
Q ss_pred EEEEEccceeeeeeccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCe-------------eccC-
Q 025322 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGK-------------EISL- 74 (254)
Q Consensus 9 ~~~a~ap~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~-------------~~~~- 74 (254)
++.++||.-|-| .|+|-.-+..| +|.++++ +++.+.+...++ +.+.+... +...
T Consensus 20 ~~~~~APgRvnL---~GeH~Dy~gg~---vL~~AId---~~~~v~i~~~~~---~~i~v~s~~~~~~~~~~~~~~~~~~~ 87 (382)
T PRK05101 20 THTIQAPGRVNL---IGEHTDYNDGF---VLPCAID---YQTVISCAKRDD---RIVRVIAADYDNQQDEFSLDAPIVPH 87 (382)
T ss_pred CeEEECCceEEE---eccceeecCCE---EEEEEec---ccEEEEEEECCC---CEEEEEECCCCCCceEEecCcccccC
Confidence 357889999999 69997766677 9999997 788888876532 22222110 0100
Q ss_pred C----cchHHHHHHHHHHHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCH
Q 025322 75 G----GGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQ 150 (254)
Q Consensus 75 ~----~~~~~~vl~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~ 150 (254)
. .+.+..++..++..... ..+++|.+.++||+++|||||||..+|++.|++.+++.++++
T Consensus 88 ~~~~w~~yv~~~~~~l~~~~~~----------------~~g~~i~i~~~iP~gaGLgSSAA~~va~~~al~~~~~~~l~~ 151 (382)
T PRK05101 88 PEQQWANYVRGVVKHLQERNPD----------------FGGADLVISGNVPQGAGLSSSASLEVAVGQTFQQLYHLPLSG 151 (382)
T ss_pred CCCchHHHHHHHHHHHHHhCCC----------------CCCeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCH
Confidence 0 12355566655543221 348999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcc----C------CchhhhccCc
Q 025322 151 SQLSAIARQGS----G------SACRSLFGGF 172 (254)
Q Consensus 151 ~el~~iA~~~~----G------sa~~s~~GG~ 172 (254)
+++.++|..+| | +-..|.+||.
T Consensus 152 ~~la~~a~~~E~~~~G~~~G~~Dq~~s~~G~~ 183 (382)
T PRK05101 152 AEIALNGQEAENQFVGCNCGIMDQLISALGKK 183 (382)
T ss_pred HHHHHHHHHHHHHhcCCCCccHHHHHHHcCCC
Confidence 99999997664 3 3344889973
No 40
>PRK00555 galactokinase; Provisional
Probab=99.43 E-value=1.3e-11 Score=116.39 Aligned_cols=135 Identities=16% Similarity=0.168 Sum_probs=96.9
Q ss_pred EEEEccceeeeeeccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCeec-----------cCC---
Q 025322 10 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEI-----------SLG--- 75 (254)
Q Consensus 10 ~~a~ap~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~~-----------~~~--- 75 (254)
.+++||.-+-|| |+|-.-+..+ .+.++++ .++.+.+...++ +.+.+..... ...
T Consensus 3 ~~~~APGRv~Li---GEH~dy~~g~---vl~~Ai~---~~~~v~~~~~~~---~~i~i~s~~~~~~~~~~~~~~~~~~~~ 70 (363)
T PRK00555 3 VRYAAPGRINLI---GEHTDYNLGF---ALPIALP---QRTVVTFTPEHT---DAITASSDRADGSARIPLDTTPGQVTG 70 (363)
T ss_pred EEEEcCceEEee---cccccCCCCe---EEeEEee---ccEEEEEEECCC---CEEEEEECCCCCceEEecCCCCCCCcc
Confidence 567899999995 9997765444 9999997 677777766542 3333321110 000
Q ss_pred -cchHHHHHHHHHHHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHH
Q 025322 76 -GGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLS 154 (254)
Q Consensus 76 -~~~~~~vl~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~ 154 (254)
.+.+..++..+++. +. ...+++|.+.++||+++|||||||..+|++.|+++++|.+++.+++.
T Consensus 71 w~~y~~gv~~~l~~~-g~---------------~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~~~~~~~~~~~la 134 (363)
T PRK00555 71 WAAYAAGVIWALRGA-GH---------------PVPGGAMSITSDVEIGSGLSSSAALECAVLGAVGAATGTRIDRLEQA 134 (363)
T ss_pred hHHHHHHHHHHHHHc-CC---------------CCCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 12333344444432 11 12489999999999999999999999999999999999999999999
Q ss_pred HHHHhcc--------C--CchhhhccCc
Q 025322 155 AIARQGS--------G--SACRSLFGGF 172 (254)
Q Consensus 155 ~iA~~~~--------G--sa~~s~~GG~ 172 (254)
++|..+| | |-..|+|||.
T Consensus 135 ~~a~~aE~~~~G~~~G~~Dq~as~~G~~ 162 (363)
T PRK00555 135 RLAQRAENEYVGAPTGLLDQLAALFGAP 162 (363)
T ss_pred HHHHHHHHhhCCCCCChhHHHHHHhCCC
Confidence 9998664 4 5566999975
No 41
>TIGR00131 gal_kin galactokinase. The galactokinases found by this model are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional, with regulatory activities that are independent of galactokinase activity.
Probab=99.43 E-value=8e-12 Score=118.41 Aligned_cols=137 Identities=21% Similarity=0.256 Sum_probs=100.4
Q ss_pred EEEEEccceeeeeeccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEe---cCe----------eccCC
Q 025322 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWL---NGK----------EISLG 75 (254)
Q Consensus 9 ~~~a~ap~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~l---nG~----------~~~~~ 75 (254)
++.++||..|.| .|+|-.- .+.+.|+++++ +++++.+...++ ..+.+ ++. +.+..
T Consensus 17 ~~~~~APgrv~L---~GeH~dy---~g~~vl~~AI~---~~~~v~~~~~~~---~~i~i~~~~~~~~~~~~~~~~~~~~~ 84 (386)
T TIGR00131 17 DFTARAPGRVNL---IGEHTDY---NDGSVLPCAID---FGTLCAVAVRDD---KNVRIYLANADNKFAERSLDLPLDGS 84 (386)
T ss_pred CEEEECCcceEe---eccceee---CCceEEeeEee---ccEEEEEEECCC---CeEEEEECCCCCcceEEECCCCCCCC
Confidence 477899999999 5888664 45669999997 688888876542 22222 111 01000
Q ss_pred -----cchHHHHHHHHHHHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCH
Q 025322 76 -----GGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQ 150 (254)
Q Consensus 76 -----~~~~~~vl~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~ 150 (254)
.+.+..++..+++.... ...+++|.+.++||+++|||||||..+|++.|++.+++++++.
T Consensus 85 ~~~~w~~y~~~~~~~~~~~~~~---------------~~~g~~i~i~s~iP~gsGLgSSAA~~vA~~~al~~~~~~~~~~ 149 (386)
T TIGR00131 85 EVSDWANYFKGVLHVAQERFNS---------------FPLGADIVCSGNVPTGSGLSSSAAFECAVGAVLQNMGHLPLDS 149 (386)
T ss_pred CCCCcHhHHHHHHHHHHHhcCC---------------CCCceEEEEECCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCH
Confidence 13445666666654332 1348999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcc----C------CchhhhccCc
Q 025322 151 SQLSAIARQGS----G------SACRSLFGGF 172 (254)
Q Consensus 151 ~el~~iA~~~~----G------sa~~s~~GG~ 172 (254)
+++.++|..+| | +-..+++||.
T Consensus 150 ~~l~~~a~~~E~~~~G~~~g~~Dq~~s~~G~~ 181 (386)
T TIGR00131 150 KQILLRIQVAENHFVGVNCGIMDQAASVLGKE 181 (386)
T ss_pred HHHHHHHHHHhcCccCCCcchHHHHHHHhccC
Confidence 99999998763 3 4466999983
No 42
>PRK05322 galactokinase; Provisional
Probab=99.40 E-value=3.2e-11 Score=114.76 Aligned_cols=136 Identities=18% Similarity=0.164 Sum_probs=98.2
Q ss_pred EEEEccceeeeeeccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEec---Ce---e-------ccC-C
Q 025322 10 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLN---GK---E-------ISL-G 75 (254)
Q Consensus 10 ~~a~ap~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~ln---G~---~-------~~~-~ 75 (254)
..++||.-|-| .|.|-.-+..| .|+++++ .++.+.+...++ ..+.+. .. . ... .
T Consensus 20 ~~~~APgRv~L---~GEH~d~~g~~---vl~~AI~---~~~~v~~~~~~~---~~i~i~s~~~~~~~~~~~~~~~~~~~~ 87 (387)
T PRK05322 20 DVFFSPGRINL---IGEHTDYNGGH---VFPAAIT---LGTYGAARKRDD---KKVRLYSANFEDLGIIEFDLDDLSFDK 87 (387)
T ss_pred eEEEcCceeEe---cccceeecCce---eeeeecc---ceEEEEEEECCC---CEEEEEECCCCCCceEEEeccccCCCC
Confidence 56789999998 59998877887 8999997 688888766542 223321 10 0 000 0
Q ss_pred ----cchHHHHHHHHHHHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHH
Q 025322 76 ----GGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQS 151 (254)
Q Consensus 76 ----~~~~~~vl~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~ 151 (254)
.+.+..++..++..... ...+++|.+.++||.++|||||||..+|++.|++++++.+++.+
T Consensus 88 ~~~w~~y~~gvi~~l~~~~~~---------------~~~g~~i~i~s~iP~gsGLgSSAA~~va~~~al~~~~~~~l~~~ 152 (387)
T PRK05322 88 EDDWANYPKGVLKFLQEAGYK---------------IDHGFDILIYGNIPNGAGLSSSASIELLTGVILKDLFNLDLDRL 152 (387)
T ss_pred ccchHHHHHHHHHHHHHcCCC---------------CCCCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 11233344444332110 12589999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcc--------C--CchhhhccCc
Q 025322 152 QLSAIARQGS--------G--SACRSLFGGF 172 (254)
Q Consensus 152 el~~iA~~~~--------G--sa~~s~~GG~ 172 (254)
++.++|..+| | |...|.+||.
T Consensus 153 ~la~~a~~~E~~~~G~~sG~mDq~as~~G~~ 183 (387)
T PRK05322 153 ELVKLGQKTENEFIGVNSGIMDQFAIGMGKK 183 (387)
T ss_pred HHHHHHHHHHhccCCCCcchHHHHHHHhccC
Confidence 9999998775 4 5567999983
No 43
>COG1829 Predicted archaeal kinase (sugar kinase superfamily) [General function prediction only]
Probab=99.38 E-value=2.7e-11 Score=109.52 Aligned_cols=161 Identities=20% Similarity=0.209 Sum_probs=113.8
Q ss_pred EEEEccceeeeeeccccccccCCCCCCCee--EEeeCCCCceeEEEEEecCCCCCceEEecCeeccCCcchHHHHHHHHH
Q 025322 10 VTAQTPTNIAVIKYWGKRDETLILPVNDSI--SVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIR 87 (254)
Q Consensus 10 ~~a~ap~nIaliKYwGk~d~~~~~P~~dSi--sltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~~~~~~~~~~~vl~~~r 87 (254)
+.+++|.+|. -||=-.-.+... ...|+ |++|+ -+++++|+..+ +.++++||++.+. .-...|++.+.
T Consensus 3 ~~~fvP~hIT--gfF~pv~~~~p~-~SGSiGaGv~l~---~gv~v~v~~~~---~~~v~~Ng~~~d~--~~~~~v~e~L~ 71 (283)
T COG1829 3 VRLFVPGHIT--GFFVPVIGKDPL-KSGSIGAGVALE---RGVTVEVRFGE---GTGVRLNGKKIDL--PITRKVIEKLG 71 (283)
T ss_pred ceEeccceeE--EEEEeccCCCCc-cCCCcceeEEec---CceeEEEEecC---CceEEECCeeccc--hhHHHHHHHhC
Confidence 4678999998 456543222122 55677 56887 57888888765 3679999987664 22344555442
Q ss_pred HHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhc-------
Q 025322 88 SRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQG------- 160 (254)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~------- 160 (254)
+.++.++++.++|+|+|+|-|+|++.+.++|++..++++ .++..++|+..
T Consensus 72 ---------------------~~~~~v~~~~~~P~G~G~G~Sga~AL~~Ala~a~~~~~~--~~~a~~~AH~aEV~~gtG 128 (283)
T COG1829 72 ---------------------PDGVGVRIESPVPLGCGYGVSGAGALGTALALAEELGLG--EESAARIAHVAEVENGTG 128 (283)
T ss_pred ---------------------ccCcceEEEecCCCCcccchhHHHHHHHHHHHHhhcCCC--HHHHHHHHHHHHHHcCCC
Confidence 235779999999999999999999999999999999866 77888888754
Q ss_pred cCCchhhhccCceeeeccccCCCCCeeEEEcccCCCCCceeEEEEEEcCCCc
Q 025322 161 SGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQK 212 (254)
Q Consensus 161 ~Gsa~~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~vv~v~~~~~k 212 (254)
-||+.+..+||++++.+...+ ..-...+++ +|+++ |+..+.++.
T Consensus 129 LGDVvAq~~GGlViR~~pG~P--g~~~vd~Ip----~~~~~--V~~~~~g~l 172 (283)
T COG1829 129 LGDVVAQYTGGLVIRVKPGGP--GEGEVDRIP----VPGLR--VITISLGEL 172 (283)
T ss_pred chHHHHHhcCcEEEEecCCCC--CeEEEEEee----cCCce--EEEEEcccc
Confidence 479999999998876654322 233345654 45577 555665433
No 44
>PLN02521 galactokinase
Probab=99.35 E-value=8.4e-11 Score=115.26 Aligned_cols=143 Identities=17% Similarity=0.311 Sum_probs=100.8
Q ss_pred EEEEccceeeeeeccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEe---cCee----cc--------C
Q 025322 10 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWL---NGKE----IS--------L 74 (254)
Q Consensus 10 ~~a~ap~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~l---nG~~----~~--------~ 74 (254)
..++||.-+-|| |.|-.-+..| .|.++++ .++.+.+...++ .+.+.+ +... .+ .
T Consensus 49 ~~~~APGRVnLi---GEHtDy~gg~---vLp~AI~---~~~~v~~~~~~~--~~~i~i~s~~~~~~~~~~~~~~~~~~~~ 117 (497)
T PLN02521 49 LFARSPGRVNLI---GEHIDYEGYS---VLPMAIR---QDTIVAIRRAEG--SKKLRIANVNDKYTTCTFPADPDQEVDL 117 (497)
T ss_pred EEEECCceEEEe---ccceeecCCe---EEEEEEc---CcEEEEEEEcCC--CCEEEEEECCCCCCceeeecCccccccc
Confidence 567899999995 9998888888 9999997 577777766432 122222 1100 00 0
Q ss_pred C----cchH----HHHHHHHHHHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCC
Q 025322 75 G----GGRY----QNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNL 146 (254)
Q Consensus 75 ~----~~~~----~~vl~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~ 146 (254)
. .+.+ ..+++.+++.... ++ ...+++|.++++||+++|||||||..+|++.|++.+++.
T Consensus 118 ~~~~W~nYv~~~~~gv~~~l~~~~~~---------~~----~~~g~~i~i~s~IP~gsGLgSSAA~~vA~~~al~~~~~~ 184 (497)
T PLN02521 118 ANHKWGNYFICGYKGVFEFLKSKGVD---------VG----PPVGLDVVVDGTVPTGSGLSSSAALVCSAAIAIMAALGL 184 (497)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhccc---------cC----CCCCeEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCC
Confidence 0 0122 2344444432211 00 134899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhccC---------Cchhhhcc--Cceeee
Q 025322 147 KENQSQLSAIARQGSG---------SACRSLFG--GFVKWI 176 (254)
Q Consensus 147 ~l~~~el~~iA~~~~G---------sa~~s~~G--G~v~~~ 176 (254)
+++.+++.++|.++|. |...|++| |.++..
T Consensus 185 ~l~~~~la~la~~~E~~~g~~~g~mDq~as~~g~~g~al~~ 225 (497)
T PLN02521 185 NFTKKEVAQFTCKCERHIGTQSGGMDQAISIMAQQGVAKLI 225 (497)
T ss_pred CCCHHHHHHHHHHHhCccCCCCChHHHHHHHhcCCCcEEEE
Confidence 9999999999988763 55779999 877543
No 45
>PF00288 GHMP_kinases_N: GHMP kinases N terminal domain; InterPro: IPR006204 The galacto- (2.7.1.6 from EC), homoserine (2.7.1.39 from EC), mevalonate (2.7.1.36 from EC) and phosphomevalonate (2.7.4.2 from EC) kinases contain, in their N-terminal section, a conserved Gly/Ser-rich region which is probably involved in the binding of ATP [, ]. This group of kinases has been called 'GHMP' (from the first letter of their substrates).; GO: 0005524 ATP binding, 0016301 kinase activity, 0016310 phosphorylation; PDB: 3F0N_B 1PIE_A 2AJ4_A 1K47_E 3GON_A 2R3V_C 3HUL_A 1KVK_A 2R42_A 3D4J_A ....
Probab=99.33 E-value=1.7e-12 Score=93.72 Aligned_cols=59 Identities=34% Similarity=0.497 Sum_probs=54.5
Q ss_pred EEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcc---C-----CchhhhccC
Q 025322 113 HIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGS---G-----SACRSLFGG 171 (254)
Q Consensus 113 ~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~~---G-----sa~~s~~GG 171 (254)
+|+++++||+++|||||||.++|++.|++++++.+++++++.++++.++ | +.+.++|||
T Consensus 1 ~i~i~s~iP~~~GLgSSaa~~~a~~~a~~~~~~~~~~~~~l~~~a~~~e~~~g~~~g~d~~~~~~GG 67 (67)
T PF00288_consen 1 DIEIDSNIPPGSGLGSSAALAVALAAALNKLFGLPLSKEELAKLAQEAERYIGKPSGIDDAASAYGG 67 (67)
T ss_dssp EEEEEESSTTTSSSSHHHHHHHHHHHHHHHHTTTSSBHHHHHHHHHHHHHHCSSSHSHHHHHHHHCS
T ss_pred CeEEEccCCCCCcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcCCCChhhHHHHHhCc
Confidence 4889999999999999999999999999999999999999999998876 2 568899997
No 46
>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism]
Probab=99.19 E-value=1.5e-09 Score=101.17 Aligned_cols=188 Identities=21% Similarity=0.292 Sum_probs=111.9
Q ss_pred EEEEccceeeeeeccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCeeccC----CcchHHHH---
Q 025322 10 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISL----GGGRYQNC--- 82 (254)
Q Consensus 10 ~~a~ap~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~~~~----~~~~~~~v--- 82 (254)
..++||..|.| +|+|...|+-| ++..++| |+|+.++..+. .+++.+.=..+.. .-+++..+
T Consensus 5 l~vsaPGKvIL---fGEHAVVyg~~---AlAaai~---LrTyl~l~~sa---n~~i~l~l~di~~~~~w~l~~~~~~l~~ 72 (397)
T KOG1511|consen 5 LLVSAPGKVIL---FGEHAVVYGRT---ALAAAID---LRTYLRLQTSA---NDRILLQLPDISIEKAWSLADFNGALPE 72 (397)
T ss_pred eeecCCccEEE---eccceeEECCc---eeEEEee---cceeEEEEecC---CCeEEEecccCCceEEEEhhhhhhhhhh
Confidence 46889999998 99999999998 9999997 99988886653 2333331100000 00111111
Q ss_pred ----------------HHHHHHHccccccccccc----hhh------cccccc----cceEEEEEcCCCCCCccccchhh
Q 025322 83 ----------------LKEIRSRACDVEDTEKGI----KIE------KKDWQK----LHLHIASFNNFPTAAGLASSAAG 132 (254)
Q Consensus 83 ----------------l~~~r~~~~~~~~~~~~~----~~~------~~~~~~----~~~~I~~~~~iP~~~GLgSSaA~ 132 (254)
++.++..-+.+++.+... .+. -..... +.+.+.++++.|+|+|||||||-
T Consensus 73 ~~~~~~~~q~p~~~~~~e~~k~l~~l~~~~~~~~~~~a~~~~lYlf~~l~~~~~g~lp~~~v~v~SelP~GaGLGSSAa~ 152 (397)
T KOG1511|consen 73 QRSTYESVQTPASEVRVELLKQLGGLLENQEKVKEHLAGLSFLYLFLGLCLRAPGTLPALTVVVDSELPLGAGLGSSAAI 152 (397)
T ss_pred hhhhhhccCCcchhhhHHHHHHhhhhhhcchhhhHHHHHHHHHHHHHHhhhcccCCCcceEEEEeccCCCcCCcchhHHH
Confidence 111111111111110000 000 000011 23789999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCH-----------HHHHHHHHhc--------cC-CchhhhccCceeeeccccCCCCCeeEEEcc
Q 025322 133 FACLVFSLAKLMNLKENQ-----------SQLSAIARQG--------SG-SACRSLFGGFVKWILGKEGNGSDSLAVQLV 192 (254)
Q Consensus 133 ~aA~~~A~~~l~~~~l~~-----------~el~~iA~~~--------~G-sa~~s~~GG~v~~~~~~~~~~~~~~~~~l~ 192 (254)
.++++.++..++|.--++ +-+.+.|-++ || |.+=|.|||+..+..+.. .+.+.
T Consensus 153 sv~lAtall~~~g~i~~p~~~~~~~e~~l~Li~~WAf~gE~~iHGtpSGiDnaV~t~Gg~i~f~kg~~-------~~~Lk 225 (397)
T KOG1511|consen 153 SVALATALLRLAGLIPPPGSNLSLAENDLALINKWAFEGEKCIHGTPSGIDNAVCTYGGLISFKKGVE-------IESLK 225 (397)
T ss_pred HHHHHHHHHHHcccCCCCcchhccccchHHHHHHHHhccceeecCCCcccchhhhccCceEEeecCcc-------ceecc
Confidence 999999999988743112 3455566655 34 566799999998887731 23343
Q ss_pred cCCCCCceeEEEEEEcCCCcccCcHHHHHhH
Q 025322 193 DEEHWNDLVIIIAVVSSRQKETSSTTGMRES 223 (254)
Q Consensus 193 ~~~~~~~l~~vv~v~~~~~k~vsS~~gm~~~ 223 (254)
+.|+|+ +++++. +.+ -+|+.|...
T Consensus 226 ---~~~~L~--illtnT-rv~-RnTk~lVa~ 249 (397)
T KOG1511|consen 226 ---HLPPLR--ILLTNT-RVP-RNTKALVAG 249 (397)
T ss_pred ---cCCCce--EEEEcc-ccC-ccHHHHHHH
Confidence 458888 667775 333 345554444
No 47
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism]
Probab=99.04 E-value=1.2e-08 Score=96.57 Aligned_cols=189 Identities=21% Similarity=0.190 Sum_probs=121.7
Q ss_pred EEEEEccceeeeeeccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEe---cCeec--------cC---
Q 025322 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWL---NGKEI--------SL--- 74 (254)
Q Consensus 9 ~~~a~ap~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~l---nG~~~--------~~--- 74 (254)
..+++||.-+-|| |.|=. .-+...+.++++ ..|.+.|+..++ .++.+ |.... +.
T Consensus 23 ~~~~~aPGRvNLI---GEHtD---Yn~G~VlP~Ain---~~t~v~v~~r~d---~~v~l~s~n~~~~~~~~~~~~d~~~~ 90 (390)
T COG0153 23 TVTAFAPGRVNLI---GEHTD---YNGGFVLPCAIN---YGTYVAVAKRDD---GKVRLYSANFGNAGDIFFLLLDIAKE 90 (390)
T ss_pred ceEecCCceEEee---cccee---ccCceEEEEEee---cceEEEEEEccC---ceEEEEeCCCccccceeecchhhccc
Confidence 4678899999998 66644 333448889997 678777776543 22222 22110 00
Q ss_pred ----CcchHHHHHHHHHHHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCH
Q 025322 75 ----GGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQ 150 (254)
Q Consensus 75 ----~~~~~~~vl~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~ 150 (254)
=.+++.-++..++..--. -.++.|.+..+||.|+||+||||--+|++.++.++++++++.
T Consensus 91 ~~~~W~nYvkgvi~~l~~~g~~----------------~~G~~i~i~gnIP~GaGLSSSAAleva~~~al~~l~~~~~~k 154 (390)
T COG0153 91 KIDDWANYVKGVIKALQKRGYA----------------FTGLDIVISGNIPIGAGLSSSAALEVAVALALQRLFNLPLDK 154 (390)
T ss_pred ccchhhhhHHHHHHHHHhcCCC----------------cCCeeEEEecCCCCCCCcCchHHHHHHHHHHHHHHhCCCCCH
Confidence 012344455544433211 248999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcc----C------Cchhhhcc---CceeeeccccCCCCCeeEEEcccCCCCCceeEEEEEEcCCCcccCcH
Q 025322 151 SQLSAIARQGS----G------SACRSLFG---GFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSST 217 (254)
Q Consensus 151 ~el~~iA~~~~----G------sa~~s~~G---G~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~vv~v~~~~~k~vsS~ 217 (254)
.++.+|+...+ | +-..+.|| =..+.+..+. -+++++ +|..++.++|.+...|.-
T Consensus 155 ~~la~i~q~AEn~fvGvn~G~mDQ~~s~~G~~~~al~ld~~~l------~~~~~~----~p~~~~~ivI~ns~vkr~--- 221 (390)
T COG0153 155 AELAKIAQVAENQFVGVNCGIMDQLASAFGKKDHALLLDCRTL------EYEPVP----FPVGGVSIVIVNSNVKRE--- 221 (390)
T ss_pred HHHHHHHHHHHhhccCCcCchHHHHHHHhCCCCcEEEEEcccC------ceEEec----cCccceEEEEecCCCccc---
Confidence 99999998775 3 34568888 2333443321 134433 355546688888753221
Q ss_pred HHHHhHhhcCccHHHHHHHHHhhHHHHH
Q 025322 218 TGMRESVETSLLLQHRAKVQFLILSDCL 245 (254)
Q Consensus 218 ~gm~~~v~ts~~~~~r~~~~~~~~~~~~ 245 (254)
. ...-|+.|....++..+.+.
T Consensus 222 ------l-a~seYn~Rr~ece~A~~~l~ 242 (390)
T COG0153 222 ------L-ADSEYNERRAECEEAAEFLG 242 (390)
T ss_pred ------c-chhHHHHHHHHHHHHHHHHH
Confidence 1 22245667666666655554
No 48
>COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.01 E-value=3.6e-09 Score=95.03 Aligned_cols=159 Identities=14% Similarity=0.155 Sum_probs=107.7
Q ss_pred ceeEEEEEccceeeeeeccccccccCCC--CCCCe-eEEeeCCCCceeEEEEEecCCCCCceEEecCeeccCCcchHHHH
Q 025322 6 WVLMVTAQTPTNIAVIKYWGKRDETLIL--PVNDS-ISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNC 82 (254)
Q Consensus 6 ~~~~~~a~ap~nIaliKYwGk~d~~~~~--P~~dS-isltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~~~~~~~~~~~v 82 (254)
.+.+++|.+|++-+= -++. ++.+- +++.++ +|+++++..-++ ++.+ ...+.+.+
T Consensus 10 ~~~~~~A~cpAs~GE---------LlQG~~~g~~~Lvs~PIa---~~s~v~~~~~s~--~~s~---------~~t~a~~~ 66 (293)
T COG4542 10 RVMVISAKCPASCGE---------LLQGSFNGSEKLVSFPIA---LFSEVTLFDRSG--KDSV---------NVTPAHKF 66 (293)
T ss_pred CCcceeeecccchhh---------hheeeecCCceEEEcchh---hhhheeeeccCC--Cccc---------ccchhHHH
Confidence 345677777777552 2222 22222 366775 788777743221 1111 12345667
Q ss_pred HHHHHHHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccC
Q 025322 83 LKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSG 162 (254)
Q Consensus 83 l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~~G 162 (254)
.+....+++.. .+...+..+.+.++||.|.|||||.|+++|++.|++..||.++++.+|.+++..+|.
T Consensus 67 ~e~~la~~~~~------------~~~~~~i~l~lqSsIPvgKG~ASSTADl~At~~A~A~~l~~~l~es~iakLcv~iEP 134 (293)
T COG4542 67 KENILARWGVT------------KLINTGIDLLLQSSIPVGKGMASSTADLVATARATARFLGRELRESEIAKLCVSIEP 134 (293)
T ss_pred HHHHHHHhCcc------------ceecCCeeEEEeccccccccccccHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhcCC
Confidence 78788877751 123567999999999999999999999999999999999999999999999999998
Q ss_pred CchhhhccCceeeeccccCCCCCeeEEEcccCCCCCceeEEEEEEcCC
Q 025322 163 SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSR 210 (254)
Q Consensus 163 sa~~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~vv~v~~~~ 210 (254)
+. .-+|-+.++++...+ +..+-+. ..|.|. +++++..
T Consensus 135 tD-siiF~~~tlFd~r~g-----~~~~~~g---~~PpL~--ilv~e~~ 171 (293)
T COG4542 135 TD-SIIFDKATLFDQREG-----RVIEFLG---EMPPLH--ILVFEGK 171 (293)
T ss_pred cc-ceecccceeehhccc-----hHHHhcC---CCCceE--EEEEcCC
Confidence 77 456777888776532 1222222 247777 6677753
No 49
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=98.96 E-value=1.1e-08 Score=106.76 Aligned_cols=138 Identities=12% Similarity=0.027 Sum_probs=92.3
Q ss_pred cceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcc----C-----CchhhhccCceeeecccc
Q 025322 110 LHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGS----G-----SACRSLFGGFVKWILGKE 180 (254)
Q Consensus 110 ~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~~----G-----sa~~s~~GG~v~~~~~~~ 180 (254)
.+++|.+.++||.++|||||||..+|++.|++++++.+++.+++.++|..+| | |...+.+||+......++
T Consensus 725 ~G~~I~i~s~IP~GsGLGSSAAlavA~l~AL~~~~g~~ls~~ela~~A~~~E~~lhg~~g~qDq~~a~~GG~~~i~~~~~ 804 (974)
T PRK13412 725 SGIEITLLAAIPAGSGLGTSSILAATVLGAISDFCGLAWDKNEICNRTLVLEQLLTTGGGWQDQYGGVLPGVKLLQTGAG 804 (974)
T ss_pred CCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHCCCCchhhhhhHhcCCeEEEEecCC
Confidence 4799999999999999999999999999999999999999999999997552 2 567799999987655432
Q ss_pred CCCCCeeEEEcccCCC-CCceeEEEEEEcCCCcccCcHHHHHh----HhhcCccHHHHHHHHHhhHHHHHHhhc
Q 025322 181 GNGSDSLAVQLVDEEH-WNDLVIIIAVVSSRQKETSSTTGMRE----SVETSLLLQHRAKVQFLILSDCLEDIG 249 (254)
Q Consensus 181 ~~~~~~~~~~l~~~~~-~~~l~~vv~v~~~~~k~vsS~~gm~~----~v~ts~~~~~r~~~~~~~~~~~~e~~~ 249 (254)
.+ ......+++.+.. .+++...+++++-+.+. +|.+..+. .....+.+...++.+.+...+++++|.
T Consensus 805 ~~-~~~~v~~L~~~~~~~~eLe~~LlL~yTGitR-~T~~iV~~Vv~~~~~~~~~~~~~l~~ig~La~ea~~ALe 876 (974)
T PRK13412 805 FA-QSPLVRWLPDSLFTQPEYRDCHLLYYTGITR-TAKGILAEIVRSMFLNSTAHLQLLHEMKAHALDMYEAIQ 876 (974)
T ss_pred cc-cCcceeecCcchhhhhhccCcEEEEECCCee-eHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1122333432211 13344446677765433 23332322 222334555567777777777777654
No 50
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=98.90 E-value=1.2e-07 Score=92.14 Aligned_cols=115 Identities=17% Similarity=0.131 Sum_probs=73.7
Q ss_pred CCccccchhhHHHHHHHHHHHhCCCC-------------CHHHHHHHHHh---------ccC-CchhhhccCceeeec-c
Q 025322 123 AAGLASSAAGFACLVFSLAKLMNLKE-------------NQSQLSAIARQ---------GSG-SACRSLFGGFVKWIL-G 178 (254)
Q Consensus 123 ~~GLgSSaA~~aA~~~A~~~l~~~~l-------------~~~el~~iA~~---------~~G-sa~~s~~GG~v~~~~-~ 178 (254)
..|||||||..+|++.|+..+++..+ +.+.+.++|.. +|| |++.|.|||++ +.+ +
T Consensus 152 K~GLGSSAAvtVa~v~ALl~~~~~~~~~~~~~~~~~~~~~~~~i~kLA~~ah~~~qGk~GSG~DvAaavyGgi~-Y~rfd 230 (454)
T TIGR01219 152 KTGLGSSAAMTTALVAALLHYLGVVDLSDPDKEGKFGCSDLDVIHNLAQTAHCLAQGKVGSGFDVSAAVYGSQR-YRRFS 230 (454)
T ss_pred ccCccHHHHHHHHHHHHHHHHhCCcccccccccccccccCHHHHHHHHHHHHHhhcCCCCCchhhhhhhcCceE-EEecC
Confidence 68999999999999999999999887 67888888852 244 67899999954 333 2
Q ss_pred ccC-------CCC-------------Ce--eEEEcccCCCCCceeEEEEEEcCCCcccCcHHHHHhHhhcCccHHHHHHH
Q 025322 179 KEG-------NGS-------------DS--LAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKV 236 (254)
Q Consensus 179 ~~~-------~~~-------------~~--~~~~l~~~~~~~~l~~vv~v~~~~~k~vsS~~gm~~~v~ts~~~~~r~~~ 236 (254)
+.. .+. +| -.+++..+ +.|+ +++.+.+ .-++|..|...| ...++...+.
T Consensus 231 ~~~l~~~~~~~~~~~~~~~L~~~v~~~W~~~i~~l~lP---~~l~--Llvgdtg--~~ssT~~lV~~V--~~~~~~~p~~ 301 (454)
T TIGR01219 231 PELISFLQVAITGLPLNEVLGTIVKGKWDNKRTEFSLP---PLMN--LFMGDPG--GGSSTPSMVGKV--KKWQMSDPEE 301 (454)
T ss_pred hhhhhhhhccccccchhhhHHHHhccCCCCceeeccCC---CCCE--EEEEcCC--CCcCcHHHHHHH--HHHHHHCHHH
Confidence 110 000 00 11122222 4577 6677754 447777887766 3355555555
Q ss_pred HHhhHHHHHHh
Q 025322 237 QFLILSDCLED 247 (254)
Q Consensus 237 ~~~~~~~~~e~ 247 (254)
.++.++.+.+.
T Consensus 302 s~~i~~~l~~a 312 (454)
T TIGR01219 302 SRENWQNLSDA 312 (454)
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 51
>COG1907 Predicted archaeal sugar kinases [General function prediction only]
Probab=98.89 E-value=1.1e-07 Score=87.00 Aligned_cols=164 Identities=21% Similarity=0.280 Sum_probs=108.6
Q ss_pred EEEEEccceeeeeecccccc-ccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCeeccCCcchHHHHHHHHH
Q 025322 9 MVTAQTPTNIAVIKYWGKRD-ETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIR 87 (254)
Q Consensus 9 ~~~a~ap~nIaliKYwGk~d-~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~~~~~~~~~~~vl~~~r 87 (254)
|+..++|+.+=+ |-.| +.-+.=.+.++|++|+ ..+.+++++.+ +.+.++|+. +..++.+..+
T Consensus 1 mv~v~tpSrlH~----gliDl~G~~GRv~GgvG~aLe--~P~l~i~~~~s-----~~~~~~ge~------~~~~~~~~a~ 63 (312)
T COG1907 1 MVRVRTPSRLHA----GLIDLNGSIGRVDGGVGLALE--EPRLEIEAKPS-----DDIEVDGED------RRERVEKAAR 63 (312)
T ss_pred CeEEecCceeee----ccccCCCcccceecceeEEee--CCceEEEEecc-----ccccccchh------hHHHHHHHHH
Confidence 466777776542 3334 2223335778899998 45666666443 446666641 2244555555
Q ss_pred HHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhc--cC-Cc
Q 025322 88 SRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQG--SG-SA 164 (254)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~--~G-sa 164 (254)
..+.. ..+++|++.+.||.-.||||....+.|++.|+++++|++++-+||+....++ || ..
T Consensus 64 ~~le~----------------~~gv~I~I~~~~P~HvGLGS~TQlaLa~a~ai~~i~gl~~~~~elA~~vgRG~tSgiGv 127 (312)
T COG1907 64 LVLEV----------------GEGVKIEIRSDIPAHVGLGSTTQLALAVASAILEIYGLELSIRELAFAVGRGGTSGIGV 127 (312)
T ss_pred Hhhcc----------------cCceEEEEEecCchhcCCChHHHHHHHHHHHHHHHhcCCCCHHHHHHHHccCCccceeE
Confidence 55543 3579999999999999999999999999999999999999999999888777 45 34
Q ss_pred hhhhccCceeeeccccCC--CCC--eeEEEcccCCCCC-ceeEEEEEEcCC
Q 025322 165 CRSLFGGFVKWILGKEGN--GSD--SLAVQLVDEEHWN-DLVIIIAVVSSR 210 (254)
Q Consensus 165 ~~s~~GG~v~~~~~~~~~--~~~--~~~~~l~~~~~~~-~l~~vv~v~~~~ 210 (254)
..--+|||++ +.+.... ++. ....|. ++| |.++|++|++-+
T Consensus 128 ~afe~GGFIV-DGGh~~~f~ps~~sP~I~R~----dfPedW~~VlaIP~~~ 173 (312)
T COG1907 128 YAFEYGGFIV-DGGHSFGFLPSSASPLIFRL----DFPEDWRFVLAIPEVE 173 (312)
T ss_pred EEEEECCEEE-ECCcccCcccCCCCceeeee----cCCCceEEEEEecCCC
Confidence 5577899984 3332110 000 012232 356 677777777753
No 52
>PLN02865 galactokinase
Probab=98.80 E-value=7.1e-07 Score=86.17 Aligned_cols=144 Identities=15% Similarity=0.075 Sum_probs=94.2
Q ss_pred EEEEccceeeeeeccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCce-----------EEecCeec------
Q 025322 10 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDR-----------MWLNGKEI------ 72 (254)
Q Consensus 10 ~~a~ap~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~-----------i~lnG~~~------ 72 (254)
..++||.=+=|| |.|=.= -+...|.++++ .++.+.+...++. ..+ +.++....
T Consensus 31 ~~~~APGRVnlI---GEHtDY---ngG~VLp~AI~---~~~~va~~~~~~~-~i~v~s~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
T PLN02865 31 RVVVSPYRICPL---GAHIDH---QGGTVSAMTIN---KGILLGFVPSGDP-EVLLRSAQFEGEVRFRVDEIQHPIANVS 100 (423)
T ss_pred eEEEcCcceecc---cccccC---CCCeEEeEEee---ccEEEEEEECCCC-EEEEEECCCCCceEEecccccccccccc
Confidence 457899999987 776432 23448999998 5666666554321 111 11111000
Q ss_pred -cC-C----cchHHHHHHHHHHHccccccccccchhhcccccccceEEEEEcCC-CCCCccccchhhHHHHHHHHHHHhC
Q 025322 73 -SL-G----GGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNF-PTAAGLASSAAGFACLVFSLAKLMN 145 (254)
Q Consensus 73 -~~-~----~~~~~~vl~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~i-P~~~GLgSSaA~~aA~~~A~~~l~~ 145 (254)
+. . .+.+.-++..+++.-.. ...++.+.+..++ |.++||+||||..+|++.|++.+++
T Consensus 101 ~~~~~~~~W~~Yv~gv~~~l~~~g~~---------------~~~G~~~~v~g~vpP~gsGLsSSAAl~va~~~al~~~~~ 165 (423)
T PLN02865 101 SDSKEESNWGDYARGAVYALQSRGHA---------------LSQGITGYISGSEGLDSSGLSSSAAVGVAYLLALENANN 165 (423)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCC---------------CCCceEEEEECCCCCCCCcccHHHHHHHHHHHHHHHHhC
Confidence 00 0 12444566655532111 1258999999999 6899999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcc--------C--Cchh---hhccCceeeecc
Q 025322 146 LKENQSQLSAIARQGS--------G--SACR---SLFGGFVKWILG 178 (254)
Q Consensus 146 ~~l~~~el~~iA~~~~--------G--sa~~---s~~GG~v~~~~~ 178 (254)
++++.+++.+++...| | |-.. +-.|++...+..
T Consensus 166 ~~~~~~~la~~a~~~E~~~~G~~~G~mDQ~as~~~~~g~~~~iDf~ 211 (423)
T PLN02865 166 LTVSPEDNIELDRLIENEYLGLRNGILDQSAILLSRYGCLTFMDCK 211 (423)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCCccccHHHHHhcccCceEEEEcc
Confidence 9999999999997665 4 3344 445577765543
No 53
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=98.68 E-value=9.8e-07 Score=80.98 Aligned_cols=186 Identities=16% Similarity=0.097 Sum_probs=108.8
Q ss_pred EEEEEccceeeeeecccccccc-C-CCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCee---c----cCCc-ch
Q 025322 9 MVTAQTPTNIAVIKYWGKRDET-L-ILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE---I----SLGG-GR 78 (254)
Q Consensus 9 ~~~a~ap~nIaliKYwGk~d~~-~-~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~---~----~~~~-~~ 78 (254)
|+..+||--|.+. -|=-|.+ | .--+--.++.|+| .|+..+++.. .+++|.++=.. + ...+ +.
T Consensus 1 Mii~raPLRItfg--GGGTDvepy~~k~GGaVlnatId---ky~y~~i~~~---~d~~I~~~~~~~~~v~~~~~~~h~~~ 72 (333)
T COG2605 1 MIISRAPLRITFG--GGGTDVEPYCSKHGGAVLNATID---KYIYVTIEKG---FDDEIRVRYDRTEFVKSYLENEHKPL 72 (333)
T ss_pred CcccccceEEEec--CCCcCchHHHHhcCCEEEEeeee---eEEEEEEccC---CCceEEEecchHHhhhhhHhhcCchH
Confidence 3455678788764 3434421 0 0011125678997 5776666443 24566665111 1 1112 22
Q ss_pred HHHHHHHHHHHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 025322 79 YQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIAR 158 (254)
Q Consensus 79 ~~~vl~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~ 158 (254)
+..++++. +++.- +.++++|....++|+|+|||||||..+|++-|++.+-|..+++.+|++.|.
T Consensus 73 ~~~~l~r~--~l~~~--------------g~~~~el~~~~D~P~GSGLGSSSa~vvaLl~a~~~~kg~~~~~~~LA~eAy 136 (333)
T COG2605 73 VVESLKRD--FLEFN--------------GGTPIELHTQSDAPPGSGLGSSSAFVVALLNALHAWKGESLGPYELAREAY 136 (333)
T ss_pred HHHHHHHH--HHhhc--------------CCCceEEEEecCCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 33333321 22221 123499999999999999999999999999999999999999999999997
Q ss_pred hcc--------C--CchhhhccCceeeeccccCCCCCeeEEEcccCCC-CCceeEEEEEEcCCCcccCcHHHHH
Q 025322 159 QGS--------G--SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEH-WNDLVIIIAVVSSRQKETSSTTGMR 221 (254)
Q Consensus 159 ~~~--------G--sa~~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~-~~~l~~vv~v~~~~~k~vsS~~gm~ 221 (254)
.+| | +-=++.||||-...-... .+....+|..... ..+|+.-++++--+-+..||..-+.
T Consensus 137 ~IER~~l~~~gG~QDqYaaA~GGFnfMEf~~~---~~V~v~pL~i~~e~~~Ele~~~lL~yTGi~R~Ss~V~~d 207 (333)
T COG2605 137 EIEREDLKIVGGKQDQYAAAFGGFNFMEFRGN---GEVVVNPLRINRERTAELEARLLLYYTGITRQSSEVIED 207 (333)
T ss_pred HHHHHHhccccccccHHHHHhCCceEEEEcCC---CcEEEeecccchhHHHHHHhceEEEEeccccchhHHHHH
Confidence 774 3 556799999964322210 1244445443211 1334333444444445555554433
No 54
>PTZ00290 galactokinase; Provisional
Probab=98.34 E-value=6.2e-05 Score=73.72 Aligned_cols=117 Identities=12% Similarity=0.107 Sum_probs=70.1
Q ss_pred EEEEccceeeeeeccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEe--cCee------c-cCCc----
Q 025322 10 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWL--NGKE------I-SLGG---- 76 (254)
Q Consensus 10 ~~a~ap~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~l--nG~~------~-~~~~---- 76 (254)
+.++||.=+-|| |.|=. .-+...+.++++ .++.+.+...+......+.+ +... . +...
T Consensus 38 ~~~~APGRVnLI---GEHtD---YngG~VLp~AId---~~~~va~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~W 108 (468)
T PTZ00290 38 LFTFAPGRVNFI---GEHVD---YMGGYVCPAAVL---EGCHILVGRVKHFCDHKLRFATETDEHFVLDHLGGAKHNKAW 108 (468)
T ss_pred EEEeccceeeec---ccccc---cCCCeeeecccc---CcEEEEEeecCCCCCCeEEEEECCCceeecCcccccCCcccH
Confidence 677899999997 65522 233448899997 56666654321101122222 1100 0 0011
Q ss_pred -chHHHHHHHHHHHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhC
Q 025322 77 -GRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMN 145 (254)
Q Consensus 77 -~~~~~vl~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~ 145 (254)
+.+.-++..+.+..+. .+.+. ...++.+.+..+||.|+||+||||-.+|++.|++.+++
T Consensus 109 ~nYv~gv~~~~l~~~g~--------~~~~~--~~~G~d~~i~gdVP~GaGLSSSAAleva~~~al~~~~~ 168 (468)
T PTZ00290 109 TTFVRGAATLRLNRLGV--------AIDAP--SLQGVCMVVHGTLPMGAGMSASASFGVALLNAINTVVT 168 (468)
T ss_pred HHHHHHHHHHHHHHhCC--------CcccC--CCCCeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhh
Confidence 2444455443333332 00000 12589999999999999999999999999999999873
No 55
>KOG1537 consensus Homoserine kinase [Amino acid transport and metabolism]
Probab=98.25 E-value=1.2e-06 Score=79.49 Aligned_cols=104 Identities=18% Similarity=0.166 Sum_probs=69.6
Q ss_pred cceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcc----------------------------
Q 025322 110 LHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGS---------------------------- 161 (254)
Q Consensus 110 ~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~~---------------------------- 161 (254)
..-++.+.|.||.++|||||+++..|++...|..+.+.++...++.....++
T Consensus 93 ~~Tk~hvtNPiplgrGigssgta~~aGv~l~ne~a~LGlsk~~mldy~lmierhpdn~~a~mmGgf~GSflr~l~e~E~~ 172 (355)
T KOG1537|consen 93 ITTKKHVTNPIPLGRGIGSSGTAKMAGVRLVNESADLGLSKGSMLDYSLMIERHPDNAVAEMMGGFLGSFLRALLESEAK 172 (355)
T ss_pred cceeeeecCCccccccccchhhhhhhhheecchHhhcCCccccchhHHHHHhhChHHHHHHHHhhHHHHHHHHhCHhhhh
Confidence 3456889999999999999999999999999998887777555544322111
Q ss_pred --C----CchhhhccCceeeeccccCCCCCe-eEEEcccCCCCCceeEEEEEEcCCCcccCcHHHHHhH
Q 025322 162 --G----SACRSLFGGFVKWILGKEGNGSDS-LAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRES 223 (254)
Q Consensus 162 --G----sa~~s~~GG~v~~~~~~~~~~~~~-~~~~l~~~~~~~~l~~vv~v~~~~~k~vsS~~gm~~~ 223 (254)
| +..+...|||++..+.+ +.+. ...|+++. ++|++++++++++ .+ |+.|+..
T Consensus 173 ~~~~~ad~ilp~~~gg~~li~~lp---P~dlg~~~r~pw~---~~lk~i~viP~Fe---l~-T~k~R~v 231 (355)
T KOG1537|consen 173 VSGYHADNILPAIMGGFVLIRNLP---PLDLGKPLRFPWD---KDLKFILVIPDFE---LP-TKKMRAV 231 (355)
T ss_pred hcCCCHHHhcccccCCeeeecCCC---cccccccccCCCC---ccceEEEEecccc---cc-chhhhhh
Confidence 1 44667788887655442 1111 23444432 8899998888875 33 3345544
No 56
>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism]
Probab=95.71 E-value=0.042 Score=50.70 Aligned_cols=62 Identities=26% Similarity=0.348 Sum_probs=42.9
Q ss_pred EEEEEcCCCC---CCccccchhhHHHHH--HHHHHHhCCCCCH-HHHHHHHH---------hccC-CchhhhccCcee
Q 025322 113 HIASFNNFPT---AAGLASSAAGFACLV--FSLAKLMNLKENQ-SQLSAIAR---------QGSG-SACRSLFGGFVK 174 (254)
Q Consensus 113 ~I~~~~~iP~---~~GLgSSaA~~aA~~--~A~~~l~~~~l~~-~el~~iA~---------~~~G-sa~~s~~GG~v~ 174 (254)
.+...+-+|- -.||||||+.+..+. +.+....+.+++. .++-++|. -||| +++.+.||+++.
T Consensus 94 yy~q~~f~~d~g~KtGlGSSAa~~tsLt~~lfls~~~~~nvd~k~eIhklaqiAhc~aQggIGSGfDiaaA~fGsiiy 171 (337)
T COG3890 94 YYDQSNFFFDDGTKTGLGSSAAVATSLTCGLFLSHANATNVDEKGEIHKLAQIAHCYAQGGIGSGFDIAAAIFGSIIY 171 (337)
T ss_pred hcccccceecCCccCCCcchhHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhCCCCccchhhHhhhcceEE
Confidence 3444444554 479999999999988 4444445667775 66666663 2356 889999999985
No 57
>KOG4644 consensus L-fucose kinase [Carbohydrate transport and metabolism]
Probab=94.35 E-value=0.23 Score=49.45 Aligned_cols=65 Identities=18% Similarity=0.360 Sum_probs=46.0
Q ss_pred cceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHH-----------HHHHHHhccC--CchhhhccCcee
Q 025322 110 LHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQ-----------LSAIARQGSG--SACRSLFGGFVK 174 (254)
Q Consensus 110 ~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~e-----------l~~iA~~~~G--sa~~s~~GG~v~ 174 (254)
-+|+|...+++|+|+|||.|+=-+.-.++|+.++.|.--..+. +.++-..+.| +-|.+++.|+-.
T Consensus 690 ~GfeihT~SdLPHGSGLGTSSIlA~TaLaAi~~aagr~~gTeaLiHailHtvlrlEQilTTGGGWQDQ~G~im~GIK~ 767 (948)
T KOG4644|consen 690 CGFEIHTSSDLPHGSGLGTSSILACTALAAICAAAGRADGTEALIHAILHTVLRLEQILTTGGGWQDQCGAIMEGIKK 767 (948)
T ss_pred CceEeeccccCCCCCCcchHHHHHHHHHHHHHHhhccccchhHhHHHHHHHHHHHHHHhhcCCchhhhccchhhhhhh
Confidence 4899999999999999999987777667777777664332221 1223334455 778888888854
No 58
>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism]
Probab=86.37 E-value=1 Score=44.43 Aligned_cols=49 Identities=29% Similarity=0.333 Sum_probs=40.3
Q ss_pred cceEEEEEcCCCCCCccccchhhHHHHHHHHHHHh-CCC--CCHHHHHHHHH
Q 025322 110 LHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLM-NLK--ENQSQLSAIAR 158 (254)
Q Consensus 110 ~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~-~~~--l~~~el~~iA~ 158 (254)
.++.|-...++|+|.||.||||-.++...|..++. |.+ ....++..+-.
T Consensus 141 vGl~~l~~g~vPtgsgLsSsaa~~c~a~lA~~~~~~gpn~~~~kkd~~~i~~ 192 (489)
T KOG0631|consen 141 VGLSILNDGSVPTGSGLSSSAAWLCAAALATLKLNLGPNFIISKKDLATITV 192 (489)
T ss_pred cceEEEecCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCcccchhhhhcceE
Confidence 37889999999999999999888888888888877 766 56677766654
No 59
>KOG4519 consensus Phosphomevalonate kinase [Lipid transport and metabolism]
Probab=74.99 E-value=4.2 Score=38.81 Aligned_cols=51 Identities=29% Similarity=0.379 Sum_probs=32.9
Q ss_pred CCccccchhhHHHHHHHHHHHhCC----------CCC---HHHH---HHHHH------hccC-CchhhhccCce
Q 025322 123 AAGLASSAAGFACLVFSLAKLMNL----------KEN---QSQL---SAIAR------QGSG-SACRSLFGGFV 173 (254)
Q Consensus 123 ~~GLgSSaA~~aA~~~A~~~l~~~----------~l~---~~el---~~iA~------~~~G-sa~~s~~GG~v 173 (254)
--|||||||-+-+++.++..-||. +.+ .+-+ .++|+ .||| +++++.||-..
T Consensus 152 KTGLGSSAam~T~lv~~ll~sl~~~~~d~~~k~~k~d~s~~~viHnlAQ~aHC~AQGKvGSGFDV~aA~yGS~r 225 (459)
T KOG4519|consen 152 KTGLGSSAAMTTALVAALLHSLGVVDLDDPCKEGKFDCSDLDVIHNLAQTAHCLAQGKVGSGFDVSAAVYGSQR 225 (459)
T ss_pred ccCccchHHHHHHHHHHHHHhhcceecCCCccccccCchHHHHHHHHHHHHHHHhcCCccCCcceehhhcccee
Confidence 469999999999999777766631 122 2222 33332 3366 78888888764
No 60
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=34.14 E-value=55 Score=28.26 Aligned_cols=33 Identities=15% Similarity=0.184 Sum_probs=28.2
Q ss_pred hhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccC
Q 025322 130 AAGFACLVFSLAKLMNLKENQSQLSAIARQGSG 162 (254)
Q Consensus 130 aA~~aA~~~A~~~l~~~~l~~~el~~iA~~~~G 162 (254)
--++++++.++++++|++++.++|.+-|.+++.
T Consensus 127 P~AA~alL~~L~kllgl~vd~~~L~e~Ae~ie~ 159 (188)
T TIGR00162 127 PKAAKAVLEVLCKMLSLEVSVEALEERAKEMEK 159 (188)
T ss_pred hHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 567788889999999999999999998877653
No 61
>TIGR00161 conserved hypothetical protein TIGR00161. This ortholog set includes MJ0106 from Methanococcus jannaschii and AF1251 from Archaeoglobus fulgidus, but not MJ1210 or AF0525.
Probab=27.37 E-value=80 Score=28.16 Aligned_cols=30 Identities=27% Similarity=0.182 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHhCCCCCHHHHHHHHHhcc
Q 025322 132 GFACLVFSLAKLMNLKENQSQLSAIARQGS 161 (254)
Q Consensus 132 ~~aA~~~A~~~l~~~~l~~~el~~iA~~~~ 161 (254)
++++++-++++++|.++|.++|.+-|.+++
T Consensus 185 AA~~ll~~l~~l~~~~id~~~L~e~Ae~ie 214 (238)
T TIGR00161 185 AAASLVEVLNKMLNTNVDPEPLLKEAEAIE 214 (238)
T ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHHHHHH
Confidence 577889999999999999999999887664
No 62
>PF11873 DUF3393: Domain of unknown function (DUF3393); InterPro: IPR024570 Membrane-bound lytic murein transglycosylase C (also known as murein hydrolase C), is a murein-degrading enzyme that may play a role in the recycling of muropeptides during cell elongation and/or cell division. This entry represents the N-terminal domain, whose function is currently not known.
Probab=27.10 E-value=1.3e+02 Score=26.58 Aligned_cols=33 Identities=21% Similarity=0.316 Sum_probs=22.4
Q ss_pred eccccccccCCCCCCCeeEEeeCCCCceeEEEEEecC
Q 025322 22 KYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSP 58 (254)
Q Consensus 22 KYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~ 58 (254)
|.||+.+.. +|+...--=-.| +.+|++.|.++.
T Consensus 64 ~~WG~~e~~--~a~~k~YVKYtd--~y~tRa~VdFd~ 96 (204)
T PF11873_consen 64 KIWGKNEVL--IASPKDYVKYTD--NYQTRAHVDFDK 96 (204)
T ss_pred HHhCCCccc--CCCCCCceEECC--CceeEEEEEeeC
Confidence 779999876 454444433344 478999998865
No 63
>PF06857 ACP: Malonate decarboxylase delta subunit (MdcD); InterPro: IPR023439 This family consists of the acyl carrier protein found in malonate decarboxylase and citrate lyase. This subunit has the same covalently bound prosthetic group, derived from and similar to coenzyme A, as does citrate lyase, although this protein and the acyl carrier protein of citrate lyase do not show significant sequence similarity. Both malonyl and acetyl groups are transferred to the prosthetic group for catalysis.
Probab=24.98 E-value=2.6e+02 Score=21.31 Aligned_cols=48 Identities=19% Similarity=0.167 Sum_probs=29.8
Q ss_pred eeCCCCceeEEEEEecCCCCCceEEecCeeccCCcchHHHHHHHHHHHccc
Q 025322 42 TLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIRSRACD 92 (254)
Q Consensus 42 tL~~~~L~t~t~V~~~~~~~~~~i~lnG~~~~~~~~~~~~vl~~~r~~~~~ 92 (254)
++..+|+ .+.+++.+. .+.++.|++.-....++...++++.+.+.++.
T Consensus 10 tleSsD~--~V~v~p~~~-~gi~i~l~S~v~~~fg~~i~~vi~~~l~~~~i 57 (87)
T PF06857_consen 10 TLESSDL--EVTVEPAES-GGIEIELESSVVKQFGDQIRAVIRETLEELGI 57 (87)
T ss_pred ccccCcE--EEEEEeCCC-CcEEEEEEchHHhhhHHHHHHHHHHHHHhcCC
Confidence 4544453 456666533 35677777753344567778888888877664
No 64
>CHL00079 rps9 ribosomal protein S9
Probab=24.70 E-value=3.3e+02 Score=22.27 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=14.9
Q ss_pred eEEEEEecCCCCCceEEecCeeccC
Q 025322 50 TTTTVAVSPSFDQDRMWLNGKEISL 74 (254)
Q Consensus 50 t~t~V~~~~~~~~~~i~lnG~~~~~ 74 (254)
+.++|.+.++ ...|.|||.+.+.
T Consensus 14 a~Arv~l~~G--~G~i~INg~~~~~ 36 (130)
T CHL00079 14 AVAQVRLVPG--SGEIIINGKPAEE 36 (130)
T ss_pred eEEEEEEEcC--CcEEEECCCcHHH
Confidence 3455555553 4679999997553
No 65
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=23.75 E-value=1e+02 Score=28.09 Aligned_cols=29 Identities=24% Similarity=0.253 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 025322 132 GFACLVFSLAKLMNLKENQSQLSAIARQG 160 (254)
Q Consensus 132 ~~aA~~~A~~~l~~~~l~~~el~~iA~~~ 160 (254)
+++.++-++|+++|++.+.+.|.+-|.++
T Consensus 188 AAa~vve~lnk~~~l~V~td~L~keAe~i 216 (244)
T COG1938 188 AAARVVEALNKMLGLNVDTDKLEKEAEEI 216 (244)
T ss_pred HHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 45566779999999999988888877544
No 66
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. In eukaryotes, transcription initiation of all protein encoding genes involves the polymerase II system. This sytem is modulated by both general and specific transcription factors. The general factors (which include TFIIA, TFIIB, TFIID, TFIIE, TFIIF, TFIIG and TFIIH) operate through common promoter elements, such as the TATA box. Transcription factor IIB (TFIIB) is of central importance in transcription of class II genes. It associates with TFIID-TFIIA bound to DNA (the DA complex) to form a ternary TFIID-IIA-IBB (DAB) complex, which is recognised by RNA polymerase II [, ]. TFIIB comprises ~315-340 residues and contains an imperfect C-terminal repeat of a 75-residue domain that may contribute to the symmetry of the folded protein. The basal archaeal transcription machinery resembles that of the eukaryotic polymerase II system and includes a homologue of TFIIB []. This entry represents a cyclin-like domain which is found repeated in the C-terminal region of a variety of eukaryotic TFIIB's and their archaeal counterparts. These domains individually form the typical cyclin fold, and in the transcription complex they straddle the C-terminal region of the TATA-binding protein - an interaction essential for the formation of the transcription initiation complex [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2PHG_A 1C9B_Q 1TFB_A 1VOL_A 3K7A_M 1AIS_B 1D3U_B.
Probab=22.88 E-value=1.1e+02 Score=21.43 Aligned_cols=36 Identities=11% Similarity=0.142 Sum_probs=27.8
Q ss_pred CCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 025322 120 FPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIAR 158 (254)
Q Consensus 120 iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~ 158 (254)
+..|+ |-.+.++|.++.+.+..+.+.+..|+++.+.
T Consensus 30 ~~~Gr---~~~~iaAA~iY~acr~~~~~~t~~eIa~~~~ 65 (71)
T PF00382_consen 30 LLKGR---SPESIAAACIYLACRLNGVPRTLKEIAEAAG 65 (71)
T ss_dssp TSTTS----HHHHHHHHHHHHHHHTTSSSSHHHHHHHCT
T ss_pred CcccC---CHHHHHHHHHHHHHHHcCCCcCHHHHHHHhC
Confidence 44554 4577788888999999999999999988753
No 67
>PRK00474 rps9p 30S ribosomal protein S9P; Reviewed
Probab=22.07 E-value=4.5e+02 Score=21.61 Aligned_cols=23 Identities=17% Similarity=0.410 Sum_probs=15.1
Q ss_pred eEEEEEecCCCCCceEEecCeeccC
Q 025322 50 TTTTVAVSPSFDQDRMWLNGKEISL 74 (254)
Q Consensus 50 t~t~V~~~~~~~~~~i~lnG~~~~~ 74 (254)
+.++|.+.++ ...|.|||.+.+.
T Consensus 14 a~A~v~l~~G--~G~i~VNg~~~~~ 36 (134)
T PRK00474 14 AIARATIREG--KGRVRINGVPLEL 36 (134)
T ss_pred eEEEEEEEcC--ceEEEECCEeHHH
Confidence 3455555554 4679999998654
No 68
>PTZ00086 40S ribosomal protein S16; Provisional
Probab=21.08 E-value=5e+02 Score=21.73 Aligned_cols=81 Identities=12% Similarity=0.121 Sum_probs=39.2
Q ss_pred eEEEEEecCCCCCceEEecCeeccC-CcchHHHHHHHHHHHccccccccccchhhcccccccceEEEEEcCCCCCCcccc
Q 025322 50 TTTTVAVSPSFDQDRMWLNGKEISL-GGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLAS 128 (254)
Q Consensus 50 t~t~V~~~~~~~~~~i~lnG~~~~~-~~~~~~~vl~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgS 128 (254)
+.+.|.+.++ ...|.|||.+.+. ..+.....+..=....+. ..+....+.|.+. |-|+.+
T Consensus 20 AiArv~l~~G--~G~i~INg~~l~~y~~~~~r~~i~~Pl~~~~~------------~~~~~~Di~i~V~-----GGG~sg 80 (147)
T PTZ00086 20 AVAVALVTKG--KGLIRVNGVPLDLINPETLRAKVFEPLLLVGK------------ERFSRLDIRVRVR-----GGGQVA 80 (147)
T ss_pred ceEEEEEEcC--CceEEECCcCHHHhCcHHHHHHHHHHHHHhCc------------CccCceeEEEEEE-----cCCHHH
Confidence 3445555543 4679999998664 222222222111222221 0012344555553 456544
Q ss_pred ch-hhHHHHHHHHHHHhCCCCC
Q 025322 129 SA-AGFACLVFSLAKLMNLKEN 149 (254)
Q Consensus 129 Sa-A~~aA~~~A~~~l~~~~l~ 149 (254)
=| |...|++.||..++..-.+
T Consensus 81 QA~Air~aIaRAL~~~~~~~~~ 102 (147)
T PTZ00086 81 QAYAIRQAIAKGLVAYYQKYVD 102 (147)
T ss_pred HHHHHHHHHHHHHHHHhcccCC
Confidence 33 4445777888887653333
Done!