Query 025322
Match_columns 254
No_of_seqs 159 out of 935
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 08:00:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025322.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025322hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f0n_A Mevalonate pyrophosphat 100.0 5.3E-54 1.8E-58 407.0 22.5 238 7-249 21-259 (414)
2 3lto_A Mevalonate diphosphate 100.0 1.2E-49 4.2E-54 367.6 21.9 210 10-249 3-224 (323)
3 3qt5_A Mevalonate diphosphate 100.0 7.2E-46 2.5E-50 342.6 22.2 225 5-249 5-230 (332)
4 2hke_A Diphosphomevalonate dec 100.0 7.8E-44 2.7E-48 334.0 24.7 225 8-248 4-232 (380)
5 1fi4_A Mevalonate 5-diphosphat 100.0 4.4E-42 1.5E-46 326.0 23.7 238 7-248 23-261 (416)
6 2gs8_A Mevalonate pyrophosphat 100.0 8.5E-36 2.9E-40 271.2 18.7 213 8-248 7-220 (317)
7 1h72_C HK, homoserine kinase; 99.9 1.5E-21 5E-26 174.6 20.7 174 9-223 2-186 (296)
8 3hul_A HSK, HK, homoserine kin 99.9 5.8E-22 2E-26 179.9 18.3 167 9-223 2-175 (298)
9 2v8p_A 4-diphosphocytidyl-2-C- 99.9 7.9E-21 2.7E-25 169.3 18.7 174 9-222 4-180 (271)
10 2hfs_A Mevalonate kinase, puta 99.8 2E-19 7E-24 163.3 20.6 182 9-223 13-208 (332)
11 3pyf_A 4-diphosphocytidyl-2-C- 99.8 1.2E-18 4E-23 158.9 20.5 176 9-223 5-188 (306)
12 2ww4_A 4-diphosphocytidyl-2C-m 99.8 2.9E-18 9.8E-23 154.3 19.5 176 10-222 3-187 (283)
13 2oi2_A Mevalonate kinase; enzy 99.8 6.8E-18 2.3E-22 150.1 20.7 173 9-227 5-186 (292)
14 1uek_A 4-(cytidine 5'-diphosph 99.8 2E-18 6.9E-23 153.6 16.6 171 9-223 1-172 (275)
15 4hac_A Mevalonate kinase; GHMP 99.8 2.3E-17 7.9E-22 150.7 21.0 174 4-222 16-200 (321)
16 2pg9_A Phosphomevalonate kinas 99.8 5E-17 1.7E-21 149.5 21.5 145 9-176 3-165 (337)
17 2x7i_A Mevalonate kinase; tran 99.8 2.5E-17 8.7E-22 148.0 18.5 170 8-221 5-192 (308)
18 1kkh_A Mevalonate kinase; mixe 99.7 9E-17 3.1E-21 145.0 17.9 145 8-175 4-172 (317)
19 2cz9_A Probable galactokinase; 99.7 2.3E-16 7.9E-21 143.7 14.2 126 9-162 1-138 (350)
20 1pie_A Galactokinase; galactos 99.7 1.5E-15 5.1E-20 143.0 19.9 166 10-209 49-242 (419)
21 3k17_A LIN0012 protein; protei 99.6 3.1E-14 1.1E-18 132.5 22.1 147 7-176 4-176 (365)
22 1kvk_A MK, mevalonate kinase; 99.6 3.2E-14 1.1E-18 132.7 21.8 176 9-221 5-248 (395)
23 1wuu_A Galactokinase; galactos 99.6 1.3E-14 4.4E-19 135.6 16.9 136 9-172 36-202 (399)
24 3gon_A Phosphomevalonate kinas 99.6 7.9E-14 2.7E-18 125.5 21.2 145 9-176 1-163 (335)
25 3k85_A D-glycero-D-manno-hepto 99.6 2.8E-14 9.5E-19 132.3 17.8 140 9-175 3-172 (357)
26 2a2c_A N-acetylgalactosamine k 99.6 7.9E-14 2.7E-18 133.9 18.8 166 9-209 55-248 (478)
27 3v2u_C Protein GAL3; rossmann 98.8 6.2E-07 2.1E-11 87.3 20.4 206 9-247 39-283 (520)
28 1z0w_A Putative protease LA ho 26.8 96 0.0033 25.8 5.4 31 119-149 83-114 (207)
29 3j20_K 30S ribosomal protein S 25.7 2.3E+02 0.008 22.2 7.1 23 50-74 13-35 (135)
30 2xzm_I RPS16E; ribosome, trans 24.6 2.2E+02 0.0077 22.6 6.9 77 50-145 18-96 (145)
31 3u5c_Q RP61R, 40S ribosomal pr 22.2 2.9E+02 0.01 21.8 8.7 82 50-150 16-99 (143)
No 1
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A
Probab=100.00 E-value=5.3e-54 Score=406.97 Aligned_cols=238 Identities=54% Similarity=0.844 Sum_probs=206.3
Q ss_pred eeEEEEEccceeeeeeccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCeeccCCcchHHHHHHHH
Q 025322 7 VLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEI 86 (254)
Q Consensus 7 ~~~~~a~ap~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~~~~~~~~~~~vl~~~ 86 (254)
..++|++||+||||||||||||+++|+|.|+|||+||++++|+|+|+|+++++.++|+++|||++.+....|+.+|++.+
T Consensus 21 ~~~~t~~A~~NIAlIKYWGKrd~~l~lP~n~SiS~TL~~~~l~T~TtV~~s~~~~~D~i~LNG~~~~~~~~ri~~~l~~i 100 (414)
T 3f0n_A 21 DLMVTCTAPVNIAVIKYWGKRDEALILPINSSLSVTLHQDQLKTTTTVAISKDFTEDRIWLNGREEDVGQPRLQACLREI 100 (414)
T ss_dssp CEEEEEEECCEEEEECCCCEEETTTTEESSCEEEEEBCTTTSCEEEEEEECTTCCSCEEEETTEEECTTCHHHHHHHHHH
T ss_pred CceEEEEecccchhhhhcccccccccCCCCCceEEEecCCCceEEEEEEEecCCCceEEEECCEecCcccHHHHHHHHHH
Confidence 35899999999999999999999999999999999999878999999999887667999999998765567899999999
Q ss_pred HHHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCCchh
Q 025322 87 RSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACR 166 (254)
Q Consensus 87 r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~~Gsa~~ 166 (254)
|++++..+....+..+| .+...+++|+++|+||+++|||||||++||++.|+++++|+ .++++++|++++||+||
T Consensus 101 R~~~~~~~~~~~~~~~~--~~~~~~~~I~~~~~iP~aaGLgSSaA~~aA~~~a~n~l~~l---~~el~~lA~~~sGs~~~ 175 (414)
T 3f0n_A 101 RRLARKRRSTEDGDTLP--LSLSYKVHVASVNNFPTAAGLASSAAGYACLAYTLAQVYGV---EGDLSEVARRGSGSACR 175 (414)
T ss_dssp HHHHHC-------CCHH--HHHHSCEEEEEEECCCGGGCCCHHHHHHHHHHHHHHHHHTC---CSCCHHHHHHHCGGGGG
T ss_pred HHHhccccccccccccc--ccccCcEEEEEEeCCCCCcCcchhHHHHHHHHHHHHHHhCC---hHHHHHHHHHhCCCcch
Confidence 99887532111111111 12246899999999999999999999999999999999997 47899999999999999
Q ss_pred hhccCceeeeccccCCCCCeeEEEcccCCCCCceeEEEEEEcCCCcccCcHHHHHhHhhcCccHHHHHHH-HHhhHHHHH
Q 025322 167 SLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKV-QFLILSDCL 245 (254)
Q Consensus 167 s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~vv~v~~~~~k~vsS~~gm~~~v~ts~~~~~r~~~-~~~~~~~~~ 245 (254)
|+|||+|+|..+...++.++++++++++.+||+|++++++++.+.|.++||++|++++.|+++|+.|++. ...++..++
T Consensus 176 s~~GG~v~w~~~~~~d~~ds~a~~i~~~~~wp~L~ivvlv~~~~~K~vsST~~mr~~l~ts~~~~~~v~~~~~~~~~~l~ 255 (414)
T 3f0n_A 176 SLYGGFVEWQMGEQADGKDSIARQIAPEWHWPQLRILILVVSADKKQTGSTVGMQTSVETSTLLKFRAESVVPERMKEMT 255 (414)
T ss_dssp GGSSSEEEECCCSCTTCTTCCEEEEECTTSCTTEEEEEEEESCCC-CCCHHHHHHHHHHHCHHHHHHHHHTHHHHHHHHH
T ss_pred HhhCCEEEEEeccCCCCCceEEEEcccccCCCCceEEEEEeCccccCCCchHHHHhhcccCccHHHHHHHHHHHHHHHHH
Confidence 9999999998775556678899999877789999999999999999999999999999999999999999 888888888
Q ss_pred Hhhc
Q 025322 246 EDIG 249 (254)
Q Consensus 246 e~~~ 249 (254)
++|.
T Consensus 256 ~AL~ 259 (414)
T 3f0n_A 256 RCIQ 259 (414)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8774
No 2
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}
Probab=100.00 E-value=1.2e-49 Score=367.63 Aligned_cols=210 Identities=31% Similarity=0.411 Sum_probs=181.0
Q ss_pred EEEEccceeeeeeccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceE---EecCeec---cC-CcchHHHH
Q 025322 10 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRM---WLNGKEI---SL-GGGRYQNC 82 (254)
Q Consensus 10 ~~a~ap~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i---~lnG~~~---~~-~~~~~~~v 82 (254)
.+|+||+||||||||||||+++|+|.|+|||+||+ ++||+|+|++ ++.++|++ ++||++. +. ...++...
T Consensus 3 ~~a~a~~nialiKYwGk~d~~l~lP~n~SiS~tl~--~~~t~T~v~~-~~~~~d~~~~~~lng~~~~~~~~~~~~~~~~~ 79 (323)
T 3lto_A 3 WFAQAPANIALIKYMGKKDENSNLPDNSSLSYTLS--NLLSSVKLEK-LPTKKDIWEPLTIPGAPEFNLSVEAQKRFIDH 79 (323)
T ss_dssp EEEEEEEEEEEECCTTCBCTTTCCBSSCEEEEEEE--EEEEEEEEEE-CSSSSCEECCBCTTSSBCCCCCSHHHHHHHHH
T ss_pred eEEEecchhHHhHhcCcccccccCCCCCceeEEcC--CCeeEEEEEe-cCCCCCeeeeEEECCEeccccccccchhHHHH
Confidence 47999999999999999999999999999999999 6999999999 66567899 9999843 22 11233445
Q ss_pred HHHHHHHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHH----HHHHHHhCCCC-CHHHHHHHH
Q 025322 83 LKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLV----FSLAKLMNLKE-NQSQLSAIA 157 (254)
Q Consensus 83 l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~----~A~~~l~~~~l-~~~el~~iA 157 (254)
+..+.+.++. ..+++|+++|+||+++|||||||++||++ .|+|+++|+++ +.+|++++|
T Consensus 80 i~~~l~~~~~----------------~~gv~I~~~n~IP~aaGLgSSAA~~aA~~~~~~~aln~l~gl~l~s~~eL~~lA 143 (323)
T 3lto_A 80 LVRLKEYFGY----------------VGGFLIQSSNNFPHSSGLASSASSFAALTKCASIALSELTQKPLPSIDEQAQLS 143 (323)
T ss_dssp HHHHHHHHTC----------------CCCEEEEEEESSCTTTTCCCHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHHHH
T ss_pred HHHHHHHhCC----------------CCCEEEEEEeCCCCccCcchhHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 5555555443 46899999999999999999999999999 99999999999 999999999
Q ss_pred HhccCCchhhhccCceeeeccccCCCCCeeEEEcccCCCCCceeEEEEEEcCCCcccCcHHHHHhHhhcCccHHHHHHHH
Q 025322 158 RQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKVQ 237 (254)
Q Consensus 158 ~~~~Gsa~~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~vv~v~~~~~k~vsS~~gm~~~v~ts~~~~~r~~~~ 237 (254)
++++||+|||+|||+++|..+ +++++. .+||++.+++++++..+|.+||+++|+. ++++|+|+.|++..
T Consensus 144 ~~gsGsaa~si~GG~v~~~~g--------~~~~l~--~~~~~l~~~v~vi~~~~~~vsT~~~~~~-l~~~~~~~~~~~~~ 212 (323)
T 3lto_A 144 RLGSGSSCRSFYAPWALWTGD--------KVSAID--LPYKDLLHQVIVISSQEKEIPSRVAHKL-VKTSPFYETRSERA 212 (323)
T ss_dssp HTTCGGGGGGGSCSEEEEETT--------EEEECC--CSCCSCEEEEEECCCCTTCCCHHHHHHH-GGGSTTTTTHHHHH
T ss_pred HHhCCCcchhhhCCEEEEecC--------cEEEcc--CCCCCCeEEEEEECCCCCCCCCHHHHhh-cccChhHHHHHHHh
Confidence 999999999999999999765 466764 2479999988888877899999999998 78999999999888
Q ss_pred HhhHHHHHHhhc
Q 025322 238 FLILSDCLEDIG 249 (254)
Q Consensus 238 ~~~~~~~~e~~~ 249 (254)
..+...++++|.
T Consensus 213 ~~~~~~l~~AL~ 224 (323)
T 3lto_A 213 EANLKLLLNAFE 224 (323)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888888775
No 3
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A
Probab=100.00 E-value=7.2e-46 Score=342.56 Aligned_cols=225 Identities=40% Similarity=0.568 Sum_probs=194.9
Q ss_pred cceeEEEEEccceeeeeeccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCeeccC-CcchHHHHH
Q 025322 5 KWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISL-GGGRYQNCL 83 (254)
Q Consensus 5 ~~~~~~~a~ap~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~~~~-~~~~~~~vl 83 (254)
.++.+++++||+||||||||||+|+.+++|+|||||++|+ .+|++++|+.+++.+.+++++||+..+. ..+++.+++
T Consensus 5 ~~~~~~~~~ap~nialiky~gk~~~~~~lP~~dslglal~--~~~~~~~v~~~~~~~~~~~~i~g~~~~~~~~n~v~~~~ 82 (332)
T 3qt5_A 5 SMVKSGKARAHTNIALIKYWGKADETYIIPMNNSLSVTLD--RFYTETKVTFDPDFTEDCLILNGNEVNAKEKEKIQNYM 82 (332)
T ss_dssp TTCEEEEEEEEEEEEEECCCCEEETTTTEESSCEEEEEEE--EEEEEEEEEEETTCSSCEEEETTEECCHHHHHHHHHHH
T ss_pred cceEEEEEEecCcEEEEeeeeeccCCccccCCCceEEEec--CCCCeeEEEEcCCCCccEEEECCccCCcchHHHHHHHH
Confidence 5778899999999999999999999999999999999998 5899999998765445889999987543 346788888
Q ss_pred HHHHHHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCC
Q 025322 84 KEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGS 163 (254)
Q Consensus 84 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~~Gs 163 (254)
+.+++.++. ..+++|+++|+||+++|||||||+++|++.|+++++|++++.+|+.++|+++|||
T Consensus 83 ~~~~~~~~~----------------~~~~~i~~~~~iP~~~GLgSSaa~~~a~~~a~~~l~~~~l~~~el~~la~~~~g~ 146 (332)
T 3qt5_A 83 NIVRDLAGN----------------RLHARIESENYVPTAAGLASSASAYAALAAACNEALSLNLSDTDLSRLARRGSGS 146 (332)
T ss_dssp HHHHHHHTC----------------CCEEEEEEEEESCGGGTCCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHCGG
T ss_pred HHHHHhcCC----------------CCCEEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcCC
Confidence 888887764 3579999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCceeeeccccCCCCCeeEEEcccCCCCCceeEEEEEEcCCCcccCcHHHHHhHhhcCccHHHHHHHHHhhHHH
Q 025322 164 ACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKVQFLILSD 243 (254)
Q Consensus 164 a~~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~vv~v~~~~~k~vsS~~gm~~~v~ts~~~~~r~~~~~~~~~~ 243 (254)
+++|+|||+++|..+. ++.++++++++....||++++++++++.+.|.++||.+|++.++++++|+.|+....++...
T Consensus 147 ~~~~~~GG~~~~~~g~--~~~~~~~~~l~~~~~~~~l~~vv~vp~~~~~~~ss~~~~~~~~~~s~~~~~~v~~~~~~~~~ 224 (332)
T 3qt5_A 147 ASRSIFGGFAEWEKGH--DDLTSYAHGINSNGWEKDLSMIFVVINNQSKKVSSRSGMSLTRDTSRFYQYWLDHVDEDLNE 224 (332)
T ss_dssp GGGGGSCSEEEEECCS--STTTCEEEEECCTTGGGGEEEEEECCCCCCCC--CHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred chhhhcCCeEEEecCC--CCccceeeecccccCCCCcEEEEEEEcCCCCCCchHHHHHHhhhcChhHHHHHHHHHHHHHH
Confidence 9999999999997653 33567778886433468999999999998899999999999989999999999887777777
Q ss_pred HHHhhc
Q 025322 244 CLEDIG 249 (254)
Q Consensus 244 ~~e~~~ 249 (254)
++++|.
T Consensus 225 l~~Al~ 230 (332)
T 3qt5_A 225 AKEAVK 230 (332)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777764
No 4
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei}
Probab=100.00 E-value=7.8e-44 Score=334.00 Aligned_cols=225 Identities=43% Similarity=0.674 Sum_probs=191.0
Q ss_pred eEEEEEccceeeeeecccccc--ccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCeeccC-CcchHHHHHH
Q 025322 8 LMVTAQTPTNIAVIKYWGKRD--ETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISL-GGGRYQNCLK 84 (254)
Q Consensus 8 ~~~~a~ap~nIaliKYwGk~d--~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~~~~-~~~~~~~vl~ 84 (254)
+++++.||+|||||||||||| .++++|.|||||++|++.+||++++|+..++.+++++++||++.+. ..+++.++++
T Consensus 4 ~~~~a~A~~Nial~ky~Gkrddg~~~~vP~~dslglaL~~~~l~~~~~v~~~~~~~~~~i~i~g~~~~~~~~~~v~~~~~ 83 (380)
T 2hke_A 4 QCVTVEAPINIAFIKYWGKREGGETLILPTNDSFSITLSASPFRSKTSVELRDDIETDTLRLNGTEVDVGKTPRVQSMLL 83 (380)
T ss_dssp CEEEEEECCEEEEECCCCBCTTCTTTTCBSSCEEEEEBCSSSCCEEEEEEEESSCSSCEEEETTEEECGGGCHHHHHHHH
T ss_pred ccEEEEcCccchhhhhcccccCcccccCCCCCceEEEecCCCCceEEEEEECCCCCccEEEECCcccCchhHHHHHHHHH
Confidence 478999999999999999999 9999999999999998656999999998643235889999987554 4567788888
Q ss_pred HHHHHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCCc
Q 025322 85 EIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSA 164 (254)
Q Consensus 85 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~~Gsa 164 (254)
.++++++.. +...+++|+++|+||+++|||||||+++|++.|+++++|++ ++++++|++++||+
T Consensus 84 ~~~~~~~~~-------------~~~~~v~I~~~~~IP~aaGLGSSAA~aaA~l~Aln~l~gl~---~eL~~lA~~g~Gsv 147 (380)
T 2hke_A 84 HLRSTCPEE-------------LKNKKVNIVSENNFPTAAGMASSASGYCAMSAALIRAFKST---TNVSMLARLGSGSA 147 (380)
T ss_dssp HHHTSSCHH-------------HHTCEEEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHTCS---SCHHHHHHHHCGGG
T ss_pred HHHHHhccc-------------CCCCCEEEEEeccCCCccCcchHHHHHHHHHHHHHHHcCCH---HHHHHHHhhcCcce
Confidence 888766520 01358999999999999999999999999999999999987 89999999999999
Q ss_pred hhhhccCceeeeccccCCCCCeeEEEcccCCCCCceeEEEEEEcCCCcccCcHHHHHhHhhcCccHHHHHHH-HHhhHHH
Q 025322 165 CRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKV-QFLILSD 243 (254)
Q Consensus 165 ~~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~vv~v~~~~~k~vsS~~gm~~~v~ts~~~~~r~~~-~~~~~~~ 243 (254)
+||+|||+++|..+...++.+++..+++.+.+||++++++++++.+.+.++||.+|++++.++++|+.+++. ....+..
T Consensus 148 a~s~~GG~v~~~~g~~~~~~~~~~~~l~~~~~~p~l~~~vlv~~~~~~~~sst~~~r~~~~~~~~~~~~~~~~~~~~~~~ 227 (380)
T 2hke_A 148 CRSAFGGFVIWNKGEKPDGSDCVATQFVDETHWPEIQVMCAVLKGAQKDVSSTKGMQQSLKTSPLMKKRISETVPERMKI 227 (380)
T ss_dssp GGGGSSSEEEEECCSCTTSTTCEEEEEECTTSCTTEEEEEEECCCCSCCCCHHHHHHHHHHHCTTHHHHHHTHHHHHHHH
T ss_pred eeehhCCeEEEecCCCCCCCcceEEeccCcccCCcceEEEEEecCCCCCCCCHHHHHHHHhcChhHHHHHHHHHHHHHHH
Confidence 999999999988665445557788888766678999999999897789999999999998999999998876 5666666
Q ss_pred HHHhh
Q 025322 244 CLEDI 248 (254)
Q Consensus 244 ~~e~~ 248 (254)
++++|
T Consensus 228 l~~Al 232 (380)
T 2hke_A 228 ASRAI 232 (380)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66555
No 5
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2
Probab=100.00 E-value=4.4e-42 Score=326.03 Aligned_cols=238 Identities=47% Similarity=0.752 Sum_probs=196.0
Q ss_pred eeEEEEEccceeeeeeccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCeeccCCcchHHHHHHHH
Q 025322 7 VLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEI 86 (254)
Q Consensus 7 ~~~~~a~ap~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~~~~~~~~~~~vl~~~ 86 (254)
+.+++++||+||||||||||||+.+++|.+||||++|++.++|++++|+.+++.+.+++++||+..+...+++.++++.+
T Consensus 23 ~~~~~~~Ap~nialik~~gkr~~~~~~P~~dslg~aL~~~~l~~~~~v~~~~~~~~~~i~i~G~~~~~~~~~v~~~~~~~ 102 (416)
T 1fi4_A 23 VYTASVTAPVNIATLKYWGKRDTKLNLPTNSSISVTLSQDDLRTLTSAATAPEFERDTLWLNGEPHSIDNERTQNCLRDL 102 (416)
T ss_dssp CEEEEEEECCEEEEECCCCEEETTTTEESSCEEEEEBCTTTSCEEEEEEECTTCCSCBCTTTCCBSSSSSSSHHHHHHHH
T ss_pred ceEEEEEecceEEEEecccccCCceecccccceEEEEEcCCCcceEEEEEcCCCCccEEEECCccccccchHHHHHHHHH
Confidence 35689999999999999999999999999999999998555999999998643235788899986544457888999999
Q ss_pred HHHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCCchh
Q 025322 87 RSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACR 166 (254)
Q Consensus 87 r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~~Gsa~~ 166 (254)
++.++..++... ..| .+...+++|+++|+||+++|||||||+++|++.|+++++|++++.+||+++|++++||+|+
T Consensus 103 ~~~~~~~~~~~~--~~~--~~~~~gv~I~i~~~IP~~aGLGSSAA~aaA~l~Aln~l~gl~Ls~~eLa~lA~~g~Gs~~~ 178 (416)
T 1fi4_A 103 RQLRKEMESKDA--SLP--TLSQWKLHIVSENNFPTAAGLASSAAGFAALVSAIAKLYQLPQSTSEISRIARKGSGSACR 178 (416)
T ss_dssp HHHHHHHHTTCT--TSC--CGGGSCEEEEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHGGGGG
T ss_pred HHHhcccccccc--ccc--cccCCcEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhccCCchhe
Confidence 987653100000 000 0114689999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCceeeeccccCCCCCeeEEEcccCCCCCceeEEEEEEcCCCcccCcHHHHHhHhhcCccHHHHHHH-HHhhHHHHH
Q 025322 167 SLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKV-QFLILSDCL 245 (254)
Q Consensus 167 s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~vv~v~~~~~k~vsS~~gm~~~v~ts~~~~~r~~~-~~~~~~~~~ 245 (254)
|+|||+++|..+...++.+++..+++.+.+||++++++++++++.+.++||.+|++.+.++++|+.|++. ....+..++
T Consensus 179 sl~GG~v~~~~G~~~~~~~~~~~~l~~~~~~p~l~~vvlv~~~~~~~~sst~~~~~~~~~~~~~~~~~~~i~~~~~~~l~ 258 (416)
T 1fi4_A 179 SLFGGYVAWEMGKAEDGHDSMAVQIADSSDWPQMKACVLVVSDIKKDVSSTQGMQLTVATSELFKERIEHVVPKRFEVMR 258 (416)
T ss_dssp GGSSSEEEEECCSCTTCTTCEEEEEECGGGSTTEEEEEEEECCCSCCCCHHHHHHHHHHHCSHHHHHHHTHHHHHHHHHH
T ss_pred EeeCCcEEEecCCcCCCCCceeEEecCccCCcccEEEEEEECCCCCCcCCHHHHHHHhhcCHhHHHHHHHHHHHHHHHHH
Confidence 9999999987664344557788888755568999999999999889999999999988899999988876 556666666
Q ss_pred Hhh
Q 025322 246 EDI 248 (254)
Q Consensus 246 e~~ 248 (254)
++|
T Consensus 259 ~AL 261 (416)
T 1fi4_A 259 KAI 261 (416)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
No 6
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas}
Probab=100.00 E-value=8.5e-36 Score=271.21 Aligned_cols=213 Identities=29% Similarity=0.435 Sum_probs=167.7
Q ss_pred eEEEEEccceeeeeeccccccccCCCCCCCeeEEeeCCCCceeEEEEEe-cCCCCCceEEecCeeccCCcchHHHHHHHH
Q 025322 8 LMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAV-SPSFDQDRMWLNGKEISLGGGRYQNCLKEI 86 (254)
Q Consensus 8 ~~~~a~ap~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~-~~~~~~~~i~lnG~~~~~~~~~~~~vl~~~ 86 (254)
.++++.||+||+|||||||||+.+++|+|||+|++|+ ++|++++|+. +++.+.+++.++|.+.+. +. .+.+..+
T Consensus 7 ~~~~~~ap~~i~l~~~~g~~~~g~~lp~~dslg~al~--~l~~~~~v~~~~~~~~~~~~~~~g~~~~~--~~-~n~v~~~ 81 (317)
T 2gs8_A 7 NVITVTSYANIAIIKYWGKENQAKMIPSTSSISLTLE--NMFTTTSVSFLPDTATSDQFYINGILQND--EE-HTKISAI 81 (317)
T ss_dssp CEEEEEEEEEEEEECCCCEEETTTTEESSCEEEEEEE--EEEEEEEEEECCTTCCSCEEEETTEECCH--HH-HHHHHHH
T ss_pred CcEEEEecCcEEEEeeeeeccCCcccCCCCceEEEee--cccceEEEEEEcCCCCeEEEEECCCcccc--ch-HHHHHHH
Confidence 3578999999999999999999999999999999996 4999999997 542224778899975432 11 1223333
Q ss_pred HHHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCCchh
Q 025322 87 RSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACR 166 (254)
Q Consensus 87 r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~~Gsa~~ 166 (254)
.+.+... .. .+++|+++++||+++|||||||+++|++.|+++++|++++.+|+.++|++++|++++
T Consensus 82 ~~~~~~~-------------~~-~g~~I~i~~~IP~~~GLGSSaA~~vA~~~al~~l~g~~ls~~el~~la~~~~G~~~~ 147 (317)
T 2gs8_A 82 IDQFRQP-------------GQ-AFVKMETQNNMPTAAGLSSSSSGLSALVKACDQLFDTQLDQKALAQKAKFASGSSSR 147 (317)
T ss_dssp HTTTCCT-------------TC-CCEEEEEECCSCGGGCCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGG
T ss_pred HHHHHHh-------------cC-CCeEEEEeCCCCCCCchHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcchhHh
Confidence 3332220 11 579999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCceeeeccccCCCCCeeEEEcccCCCCCceeEEEEEEcCCCcccCcHHHHHhHhhcCccHHHHHHHHHhhHHHHHH
Q 025322 167 SLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKVQFLILSDCLE 246 (254)
Q Consensus 167 s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~vv~v~~~~~k~vsS~~gm~~~v~ts~~~~~r~~~~~~~~~~~~e 246 (254)
+++||+++|.. ++.++...+++ ++++++++|++++.+.++|++.|++.+.+++.++.|..........+++
T Consensus 148 ~~~GG~~~~~~----~~~~~~~~~~~-----~~~~~~v~i~~~~~~~~~tt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (317)
T 2gs8_A 148 SFFGPVAAWDK----DSGAIYKVETD-----LKMAMIMLVLNAAKKPISSREGMKLCRDTSTTFDQWVEQSAIDYQHMLT 218 (317)
T ss_dssp GGSCSEEEECT----TTCCEEECCCC-----CCEEEEEEECCCSSCCSCHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHH
T ss_pred hhcCChheEee----CCCceeEEEcc-----ccccEEEEEEECCCcCcccHHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Confidence 99999998864 22344444442 3678778888887788999999998877888888777666666666665
Q ss_pred hh
Q 025322 247 DI 248 (254)
Q Consensus 247 ~~ 248 (254)
++
T Consensus 219 al 220 (317)
T 2gs8_A 219 YL 220 (317)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 7
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*
Probab=99.89 E-value=1.5e-21 Score=174.60 Aligned_cols=174 Identities=16% Similarity=0.120 Sum_probs=130.2
Q ss_pred EEEEEccceeeeeeccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCeeccC--CcchHHHHHHHH
Q 025322 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISL--GGGRYQNCLKEI 86 (254)
Q Consensus 9 ~~~a~ap~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~~~~--~~~~~~~vl~~~ 86 (254)
+++++||+.|+++ .|++|++|+++| ..+++++++..++ +..++..+|...+. ..+.+.++++.+
T Consensus 2 ~i~v~aPaki~nl-----------G~g~~vl~~a~d--~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~n~v~~a~~~~ 67 (296)
T 1h72_C 2 KVRVKAPCTSANL-----------GVGFDVFGLCLK--EPYDVIEVEAIDD-KEIIIEVDDKNIPTDPDKNVAGIVAKKM 67 (296)
T ss_dssp EEEEEEEEEEECT-----------GGGTTTEEEEEE--EEEEEEEEEEESS-SSEEEEESCTTSCCCTTTSHHHHHHHHH
T ss_pred eEEEEEEeehhcc-----------ccchhhhHHhcc--cccEEEEEEecCC-CeEEEEEcCCcCCCCCccCcHHHHHHHH
Confidence 5788999999986 589999999998 3466667765432 12334446643322 346778888888
Q ss_pred HHHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccC----
Q 025322 87 RSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSG---- 162 (254)
Q Consensus 87 r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~~G---- 162 (254)
++.++. ..+++|+++++||+++|||||||.++|++.|+++++|++++.+++.++|+++++
T Consensus 68 ~~~~g~----------------~~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~l~~~~l~~~~l~~la~~~e~~~~g 131 (296)
T 1h72_C 68 IDDFNI----------------GKGVKITIKKGVKAGSGLGSSAASSAGTAYAINELFKLNLDKLKLVDYASYGELASSG 131 (296)
T ss_dssp HHHTTC----------------CCEEEEEEECSSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHS
T ss_pred HHHhCC----------------CCCeEEEEEcCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcCcccC
Confidence 887664 358999999999999999999999999999999999999999999999998877
Q ss_pred -----CchhhhccCceeeeccccCCCCCeeEEEcccCCCCCceeEEEEEEcCCCcccCcHHHHHhH
Q 025322 163 -----SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRES 223 (254)
Q Consensus 163 -----sa~~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~vv~v~~~~~k~vsS~~gm~~~ 223 (254)
+++++++||++++... ......+++.+ ++++ ++++++ ...++|.+.++..
T Consensus 132 ~~~~ddv~~~~~gg~~~~~~~-----~~~~~~~~~~~---~~~~--~vl~~p-~~~~~T~~~~~~l 186 (296)
T 1h72_C 132 AKHADNVAPAIFGGFTMVTNY-----EPLEVLHIPID---FKLD--ILIAIP-NISINTKEAREIL 186 (296)
T ss_dssp SCCCTTHHHHHHCSEEEEEET-----TTTEEEEECCC---SCCC--EEEECC-SSCCCHHHHHHTS
T ss_pred CCCccchHHHHhCCEEEEEeC-----CceEEEEEcCC---CCeE--EEEEeC-CCCccHHHHHHhc
Confidence 8888999999987532 12224555432 3666 445555 3467888876643
No 8
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}
Probab=99.89 E-value=5.8e-22 Score=179.95 Aligned_cols=167 Identities=18% Similarity=0.204 Sum_probs=117.9
Q ss_pred EEEEEccceeeeeeccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCee---ccC-CcchHHHHHH
Q 025322 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE---ISL-GGGRYQNCLK 84 (254)
Q Consensus 9 ~~~a~ap~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~---~~~-~~~~~~~vl~ 84 (254)
|+++++|++.|++ .|+|||||++|+ +|++++++... +.+.+.+.. ++. +.+. +++
T Consensus 2 m~~v~vPat~anl-----------G~Gfd~lg~al~---l~d~v~~~~~~----~~~~i~~~~~~~~p~~~~nl---v~~ 60 (298)
T 3hul_A 2 SLRIRVPATTANL-----------GPGFDSCGLALT---LYLTLDIGAEA----DSWYIEHNIGGGIPHDETNV---IIE 60 (298)
T ss_dssp CEEEEEEEEEESC-----------TTCTTTEEEEEE---EEEEEEEEEEC----SSCEEECCCCTTCCSSTTSH---HHH
T ss_pred eEEEEEeeceecc-----------CCCcchhhhhcc---cceEEEEEEcC----CceEEEecCcccCCCCCCcH---HHH
Confidence 5899999999998 999999999997 99988886422 234444432 221 2233 444
Q ss_pred HHHHHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccC--
Q 025322 85 EIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSG-- 162 (254)
Q Consensus 85 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~~G-- 162 (254)
.++..+.. ..+++|+++++||.++|||||||.++|++.|+++++|++++.+++.++|.+++|
T Consensus 61 a~~~~~~~----------------~~g~~i~i~~~iP~~~GLGsssa~~~a~~~al~~~~~~~l~~~el~~la~~~eg~~ 124 (298)
T 3hul_A 61 TALNLAPN----------------LTPHHLVMTCDIPPARGLGSSSAAVVAGIELANTLAELNLSKEEKVRIAAEIEGHP 124 (298)
T ss_dssp HHHHHCTT----------------CCCEEEEEEECSCTTSSSSHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHSCS
T ss_pred HHHHHhcc----------------CCceEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCc
Confidence 44444332 358999999999999999999999999999999999999999999999999998
Q ss_pred -CchhhhccCceeeeccccCCCCCeeEEEcccCCCCCceeEEEEEEcCCCcccCcHHHHHhH
Q 025322 163 -SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRES 223 (254)
Q Consensus 163 -sa~~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~vv~v~~~~~k~vsS~~gm~~~ 223 (254)
+++++++||+++ ..+.+ +.....+++ +|++++++++++ ..++|.+.++..
T Consensus 125 ddv~~~~~GG~~~-~~g~g---e~~~~~~~~----~p~~~~vlv~p~---~~~sT~~a~~~l 175 (298)
T 3hul_A 125 DNVAPAVLGNWVV-GAKLD---GEDFYVRHL----FPDCALIAFIPK---AELLTSESRGVL 175 (298)
T ss_dssp TTHHHHHHCSEEE-EEEET---TEEEEEEEC----CC-CEEEEEECC---CCCC--------
T ss_pred ccCcccccCCEEE-EEeCC---CcEEEEEcC----CCCeEEEEEECC---CCCCcHHHHHHH
Confidence 789999999986 33321 222234543 467776655554 347777776544
No 9
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Probab=99.86 E-value=7.9e-21 Score=169.29 Aligned_cols=174 Identities=14% Similarity=0.102 Sum_probs=128.6
Q ss_pred EEEEEccceeee-eeccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCeeccC-CcchHHHHHHHH
Q 025322 9 MVTAQTPTNIAV-IKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISL-GGGRYQNCLKEI 86 (254)
Q Consensus 9 ~~~a~ap~nIal-iKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~~~~-~~~~~~~vl~~~ 86 (254)
|++++||+.|-| .+++|+|+.. ...-+|++++++ +|+++ ++. + +.+.++|...+. ..+.+.++++.+
T Consensus 4 m~~~~aPakinl~l~v~g~r~dg--yh~~~sl~~ai~---l~~~v-~~~-~----~~i~i~~~~~~~~~~nlv~~a~~~~ 72 (271)
T 2v8p_A 4 MIKVLSPAKINLGLWVLGRLPSG--YHEILTLYQEIP---FYDEI-YIR-E----GVLRVETNIGIPQEENLVYKGLREF 72 (271)
T ss_dssp CEEEEEEEEEEEEEEEEEECTTS--CEEEEEEEEEEE---EEEEE-EEE-E----SSCEEEESSCCCTTTCHHHHHHHHH
T ss_pred eEEEeecceEEeeEeecccCCCC--CceEEEEEEEcC---cccEE-EEe-C----CeEEEEeCCCCCCCchHHHHHHHHH
Confidence 566777765543 3778998652 222349999997 89988 765 2 235565532222 346778888888
Q ss_pred HHHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCCchh
Q 025322 87 RSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACR 166 (254)
Q Consensus 87 r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~~Gsa~~ 166 (254)
++.++. ..+++|+++++||+++|||||||.++|++.|+++++|++++.+++.++|+++++|+++
T Consensus 73 ~~~~g~----------------~~g~~i~i~~~IP~g~GLGsSsa~a~a~l~al~~l~~~~l~~~el~~la~~~e~dv~~ 136 (271)
T 2v8p_A 73 ERITGI----------------EINYSIFIQKNIPPGAGLGGGSSNLAVVLKKVNELLGSPLSEEELRELVGSISADAPF 136 (271)
T ss_dssp HHHHCC----------------CCCEEEEEECCSCTTSSSCHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHCTTTGG
T ss_pred HHHhCC----------------CCCeEEEEEeCCCCCCCCchHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCCHHH
Confidence 877654 3579999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCceeeeccccCCCCCeeEEEcccCCCCC-ceeEEEEEEcCCCcccCcHHHHHh
Q 025322 167 SLFGGFVKWILGKEGNGSDSLAVQLVDEEHWN-DLVIIIAVVSSRQKETSSTTGMRE 222 (254)
Q Consensus 167 s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~-~l~~vv~v~~~~~k~vsS~~gm~~ 222 (254)
+++||+++.. +.+ + ...+++ +| +++++++ ++ ..+++|.+.++.
T Consensus 137 ~~~gg~~~~~-g~g---~--~~~~l~----~~~~~~~vl~--~p-~~~~sT~~~~~~ 180 (271)
T 2v8p_A 137 FLLGKSAIGR-GKG---E--VLEPVE----TEISGKITLV--IP-QVSSSTGRVYSS 180 (271)
T ss_dssp GGTCSEEEEE-TTT---T--EEEECC----CCCCSEEEEE--EC-SSCCCHHHHHHT
T ss_pred HhcCCeEEEE-EcC---C--EEEEcc----CCCCcEEEEE--eC-CCCCCHHHHHHh
Confidence 9999999754 221 1 244553 35 7775544 44 356777776653
No 10
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Probab=99.84 E-value=2e-19 Score=163.33 Aligned_cols=182 Identities=12% Similarity=0.131 Sum_probs=126.4
Q ss_pred EEEEEccceeeeeeccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCee-ccC----CcchHHHHH
Q 025322 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE-ISL----GGGRYQNCL 83 (254)
Q Consensus 9 ~~~a~ap~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~-~~~----~~~~~~~vl 83 (254)
.++++||+.|-|. |.|...+ +..+|+++++ +|++++|+..++.+...+ .++.. .+. ..+.+.+++
T Consensus 13 ~~~~~ApgKi~L~---Geh~~~~---G~~~l~~ai~---~~~~v~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~ 82 (332)
T 2hfs_A 13 TGKNIGYGKVILF---GEHFVVH---GAEAIVAGIS---EYTECRLEINPGVPGLQV-DDQRPAIPGYIAQKRDEQIKAH 82 (332)
T ss_dssp CSCCEEEEEEEEE---CTTGGGG---TCCEEEEEEE---EEEEEEEEEETTCCSEEE-EECCCCCTTHHHHHHHHHHHHH
T ss_pred eEEEEEeEEEEEe---cCCEEEc---CCeEEEEEec---ccEEEEEEEcCCCCCeEE-EecCccccccccccchhHHHHH
Confidence 3567899999986 7776654 4559999997 899888887531112222 23321 111 113345566
Q ss_pred HHHHHHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccC-
Q 025322 84 KEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSG- 162 (254)
Q Consensus 84 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~~G- 162 (254)
+.+++.++.. ....+++|+++++||.++|||||||.++|++.|+++++|.+++.+++.++|+++|+
T Consensus 83 ~~~~~~~g~~-------------~~~~g~~i~i~~~iP~g~GLGSSsA~~~a~~~al~~l~~~~l~~~~l~~~a~~~E~~ 149 (332)
T 2hfs_A 83 QLVLDHLKVD-------------LSGDGLKMFIGGPLVPSSGIGASASDVVAFSRALSELYQLNLTDEEVNLSAFVGEGG 149 (332)
T ss_dssp HHHHHHTTBC-------------CSSSEEEEEEECSCCCCTTSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHcCCc-------------cCCCceEEEEEcCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 6666555430 01258999999999999999999999999999999999999999999999987762
Q ss_pred --------CchhhhccCceeeeccccCCCCCeeEEEcccCCCCCceeEEEEEEcCCCcccCcHHHHHhH
Q 025322 163 --------SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRES 223 (254)
Q Consensus 163 --------sa~~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~vv~v~~~~~k~vsS~~gm~~~ 223 (254)
|.+++++||++.+..+.+ .....+++.+ |+++++ ++++ ..+++|.+.+++.
T Consensus 150 ~~G~~~G~D~~~~~~Gg~~~~~~~~g----~~~~~~~~~~---~~~~~v--l~~~-~~~~~T~~~~~~~ 208 (332)
T 2hfs_A 150 YHGTPSGADNTAATYGGLILYRRQNG----KSVFKPIAFQ---QRLYLV--VVGT-GINASTAKVVNDV 208 (332)
T ss_dssp SSSCCCSHHHHHHHHCEEEEEEECSS----SEEEEEECCC---SCEEEE--EEEC-SCCCCHHHHHHHH
T ss_pred hcCCCCcHhHHHHhcCCeEEEecCCC----CcceeeecCC---CCcEEE--EEEC-CCCccHHHHHHHH
Confidence 678899999987764421 1234555432 567744 5555 4677787776643
No 11
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Probab=99.82 E-value=1.2e-18 Score=158.86 Aligned_cols=176 Identities=15% Similarity=0.182 Sum_probs=129.3
Q ss_pred EEEEEccceeeee-eccccccccCCCCCCCeeE---EeeCCCCceeEEEEEecCCCCCceEEecCee---ccC-CcchHH
Q 025322 9 MVTAQTPTNIAVI-KYWGKRDETLILPVNDSIS---VTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE---ISL-GGGRYQ 80 (254)
Q Consensus 9 ~~~a~ap~nIali-KYwGk~d~~~~~P~~dSis---ltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~---~~~-~~~~~~ 80 (254)
+++.+||+.|=|- .=-|||+. +|+.|. ++|+ ||++.+++..+ ..++.+.|.. ++. +.+.+.
T Consensus 5 ~~~~~apAKiNL~L~v~~~r~D-----Gyh~l~s~~~al~---l~D~l~~~~~~---~~~i~~~g~~~~~~p~~~~Nlv~ 73 (306)
T 3pyf_A 5 SVTVRVPGKVNLYLAVGDRRED-----GYHELTTVFHAVS---LVDEVTVRNAD---VLSLELVGEGADQLPTDERNLAW 73 (306)
T ss_dssp CEEEEEEEEEEEEEEECCCCTT-----SCCCEEEEEEEEE---EEEEEEEEECS---SCEEEEESTTGGGSCCSTTSHHH
T ss_pred cEEEEecceEEeecccCCcCCC-----CCcchheeEEEcc---cCCEEEEEECC---CCEEEEeCCCccCCCCCCccHHH
Confidence 5778888887330 11455543 355554 8997 99999998753 3567777642 222 356788
Q ss_pred HHHHHHHHHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 025322 81 NCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQG 160 (254)
Q Consensus 81 ~vl~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~ 160 (254)
++++.+++.++. ..+++|+++++||.++|||||||.++|++.|++++++++++.+++.++|.++
T Consensus 74 ~A~~~l~~~~g~----------------~~~~~i~i~~~iP~~~GLGsssa~a~a~l~al~~~~~~~l~~~~l~~la~~~ 137 (306)
T 3pyf_A 74 QAAELMAEHVGR----------------APDVSIMIDKSIPVAGGMAGGSADAAAVLVAMNSLWELNVPRRDLRMLAARL 137 (306)
T ss_dssp HHHHHHHHHTTC----------------CCCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC----------------CCCeEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHh
Confidence 888888887764 3589999999999999999999999999999999999999999999999999
Q ss_pred cCCchhhhccCceeeeccccCCCCCeeEEEcccCCCCCceeEEEEEEcCCCcccCcHHHHHhH
Q 025322 161 SGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRES 223 (254)
Q Consensus 161 ~Gsa~~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~vv~v~~~~~k~vsS~~gm~~~ 223 (254)
++|++++++||+++ ..+.+ + ...+++.+ +++++++++++ ..++|.+.++..
T Consensus 138 ~~Dv~~~~~Gg~~~-~~g~g---e--~~~~l~~~---~~~~~vl~~P~---~~vsT~~a~~~l 188 (306)
T 3pyf_A 138 GSDVPFALHGGTAL-GTGRG---E--ELATVLSR---NTFHWVLAFAD---SGLLTSAVYNEL 188 (306)
T ss_dssp CTTHHHHHHBSEEE-ECSSS---S--CCEEECCS---SCEEEEEEECS---SCCCHHHHHHHH
T ss_pred CCCCceeecCceEE-EEeeC---C--eEEEccCC---CCcEEEEEECC---CCCcHHHHHHhh
Confidence 99999999999975 33322 1 23444332 56775544443 458877776543
No 12
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*
Probab=99.80 E-value=2.9e-18 Score=154.32 Aligned_cols=176 Identities=11% Similarity=0.079 Sum_probs=126.6
Q ss_pred EEEEccceeee-eeccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCee--ccCCcchHHHHHHHH
Q 025322 10 VTAQTPTNIAV-IKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE--ISLGGGRYQNCLKEI 86 (254)
Q Consensus 10 ~~a~ap~nIal-iKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~--~~~~~~~~~~vl~~~ 86 (254)
++++||+.|-| +.=.|+|... ...-.|+.++++ +|++++++..++ ..+.+.+.. ++...+.+.++++.+
T Consensus 3 ~~~~apaKinL~L~v~g~~~dG--yh~l~sl~~ai~---l~~~v~v~~~~~---~~i~i~~~~~~~~~~~nlv~~a~~~~ 74 (283)
T 2ww4_A 3 TQWPSPAKLNLFLYITGQRADG--YHTLQTLFQFLD---YGDTISIELRDD---GDIRLLTPVEGVEHEDNLIVRAARLL 74 (283)
T ss_dssp EEEEEEEEEEEEEEEEEECTTS--CEEEEEEEEEEE---EEEEEEEEEESS---SCEEECSCBTTBCGGGSHHHHHHHHH
T ss_pred ccccCceeEEeeeeccCCCCCC--CcceEEEEEECC---CCcEEEEEECCC---CcEEEEeCCCCCCCcccHHHHHHHHH
Confidence 44668888877 1224787532 222238899997 999999987532 346665531 112235677788877
Q ss_pred HHHc------cccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 025322 87 RSRA------CDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQG 160 (254)
Q Consensus 87 r~~~------~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~ 160 (254)
++.+ +. ..+++|+++++||+++|||||||.++|++.|+++++|++++.+++.++|.++
T Consensus 75 ~~~~~~~~~~g~----------------~~g~~i~i~~~IP~g~GLGsSsa~~~a~l~al~~l~~~~l~~~~l~~la~~~ 138 (283)
T 2ww4_A 75 MKTAADSGRLPT----------------GSGANISIDKRLPMGGGLGGGSSNAATVLVALNHLWQCGLSMDELAEMGLTL 138 (283)
T ss_dssp HHHHHHTTCSCT----------------TCEEEEEEECCCC-CTTSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTT
T ss_pred HHHhhhhcccCC----------------CCceEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHh
Confidence 7765 32 3589999999999999999999999999999999999999999999999999
Q ss_pred cCCchhhhccCceeeeccccCCCCCeeEEEcccCCCCCceeEEEEEEcCCCcccCcHHHHHh
Q 025322 161 SGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRE 222 (254)
Q Consensus 161 ~Gsa~~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~vv~v~~~~~k~vsS~~gm~~ 222 (254)
++|++++++||+++.. +.+. ...+++ +|+++ ++++++ ...++|.+.++.
T Consensus 139 e~dv~~~~~gg~~~~~-g~g~-----~~~~l~----~~~~~--~vl~~p-~~~~sT~~~~~~ 187 (283)
T 2ww4_A 139 GADVPVFVRGHAAFAE-GVGE-----ILTPVD----PPEKW--YLVAHP-GVSIPTPVIFKD 187 (283)
T ss_dssp CTTHHHHHHTBCEEEE-TTTT-----EEEECC----CCCCE--EEEECC-SCCCCHHHHHTC
T ss_pred CCCHHHhhcCCeEEEE-ecCc-----cceEcC----CCCcE--EEEEeC-CCCCchHHHHhc
Confidence 9999999999998543 3211 234552 36677 445555 467888777654
No 13
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}
Probab=99.79 E-value=6.8e-18 Score=150.07 Aligned_cols=173 Identities=12% Similarity=0.046 Sum_probs=116.4
Q ss_pred EEEEEccceeeeeeccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCeeccCCcchHHHHHHHHHH
Q 025322 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIRS 88 (254)
Q Consensus 9 ~~~a~ap~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~~~~~~~~~~~vl~~~r~ 88 (254)
+++++||..|-|+ |+|.. .+++++|+++++ ++|++++|+..+ +.+.+++... .+.+.++.+ .
T Consensus 5 ~~~~~aP~ki~L~---Ge~~~---~~g~~~l~~ai~--~~~~~v~v~~~~----~~~~i~~~~~---~~~~~~~~~---~ 66 (292)
T 2oi2_A 5 VGVGQAHSKIILI---GEHAV---VYGYPAISLPLL--EVEVTCKVVPAE----SPWRLYEEDT---LSMAVYASL---E 66 (292)
T ss_dssp CEEEEEEEEEEEE---CTTGG---GGTCCEEEEEEE--EEEEEEEEEECS----SCCCCCCCSH---HHHHHHHHH---H
T ss_pred cEEEEeeeEEEEE---eCCee---ecCCcEEEEEEc--CcEEEEEEEECC----CceEEEecCc---cchhhhhhH---H
Confidence 6789999999985 88765 478899999993 389999997642 2344554311 122222222 2
Q ss_pred HccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcc----CCc
Q 025322 89 RACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGS----GSA 164 (254)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~~----Gsa 164 (254)
..+. ...+++|+++++||.++|||||||.++|++.|+++++|++++.+++.++|++++ |+.
T Consensus 67 ~~~~---------------~~~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~~~~~~l~~~~l~~la~~~E~~~~~~p 131 (292)
T 2oi2_A 67 YLNI---------------TEACIRCEIDSAIPEKRGMGSSAAISIAAIRAVFDYYQADLPHDVLEILVNRAEMIAHMNP 131 (292)
T ss_dssp HHTC---------------SCCCEEEEEC----CCGGGSCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHTTCCC
T ss_pred Hhcc---------------cCCceEEEEEecCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 2121 135799999999999999999999999999999999999999999999998874 332
Q ss_pred -----hhhhccCceeeeccccCCCCCeeEEEcccCCCCCceeEEEEEEcCCCcccCcHHHHHhHhhcC
Q 025322 165 -----CRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETS 227 (254)
Q Consensus 165 -----~~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~vv~v~~~~~k~vsS~~gm~~~v~ts 227 (254)
+.+.+||++.+..+. ...+++. +++.+ ++++++ ..+++|.+.++...+..
T Consensus 132 ~g~d~~~~~~gg~~~~~~~~-------~~~~~~~--~~~~~---~~i~~~-~~~~sT~~~~~~l~~~~ 186 (292)
T 2oi2_A 132 SGLDAKTCLSDQPIRFIKNV-------GFTELEM--DLSAY---LVIADT-GVYGHTREAIQVVQNKG 186 (292)
T ss_dssp CSHHHHHHTCSSCEEEETTT-------EEEECCC--CCSCE---EEEEEC-SSCCCHHHHHHHHHHTG
T ss_pred CchhHHHHhcCceEEEEcCC-------CceeecC--CCCCE---EEEEEC-CCCCcHHHHHHHHHHHH
Confidence 337899998774331 1344432 23432 566776 46788887766554333
No 14
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5
Probab=99.79 E-value=2e-18 Score=153.62 Aligned_cols=171 Identities=14% Similarity=0.098 Sum_probs=126.1
Q ss_pred EEEEEccceeeee-eccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCeeccCCcchHHHHHHHHH
Q 025322 9 MVTAQTPTNIAVI-KYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIR 87 (254)
Q Consensus 9 ~~~a~ap~nIali-KYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~~~~~~~~~~~vl~~~r 87 (254)
|++. ||+.|-|- .--|+|... ...-+|++++++ +|++++++.+ ..++..++ ..+ ..+.+.++++.++
T Consensus 1 mi~~-aPakinl~l~v~g~r~dg--yh~~~sl~~ai~---l~~~v~~~~~----~~~i~~~~-~~~-~~n~v~~a~~~~~ 68 (275)
T 1uek_A 1 MERL-APAKVNLGLSVRFRREDG--YHELHTLFAPFS---LADRLVVEPV----SSGLHFQG-PYG-RENLAYRAASLYL 68 (275)
T ss_dssp CEEE-EEEEEEEEEEEEEECTTS--SEEEEEEEEEEE---EEEEEEEEEE----SSCEEEES-TTG-GGSHHHHHHHHHH
T ss_pred Ccee-ecCeEEEeeeecCcCCCC--CceeeEEEEEcC---CCCEEEEEEC----cEEEEEcC-CCC-CccHHHHHHHHHH
Confidence 4566 88888772 113665432 334459999997 8999888762 24566666 222 3467778888888
Q ss_pred HHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCCchhh
Q 025322 88 SRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRS 167 (254)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~~Gsa~~s 167 (254)
+.++. ..+++|+++++||+++|||||||.++|++.|+++++|+++ ++.++|+++++|++++
T Consensus 69 ~~~g~----------------~~g~~i~i~~~IP~g~GLGSSsa~a~a~l~al~~l~~~~l---~l~~la~~~g~dv~~~ 129 (275)
T 1uek_A 69 EAAGQ----------------PGGVRILLEKRIPEGAGLGGGSSDAAQVLLALQALYPAEV---DLFALARTLGADVPFF 129 (275)
T ss_dssp HHTTC----------------CCEEEEEEECCSCSSSSSCHHHHHHHHHHHHHHHHSCSCC---CHHHHHHHHCTTHHHH
T ss_pred HHhCC----------------CCCEEEEEecCCCCcCcccHHHHHHHHHHHHHHHHcCCCh---HHHHHHHHhCCChHHH
Confidence 77654 3579999999999999999999999999999999999998 8999999999999999
Q ss_pred hccCceeeeccccCCCCCeeEEEcccCCCCCceeEEEEEEcCCCcccCcHHHHHhH
Q 025322 168 LFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRES 223 (254)
Q Consensus 168 ~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~vv~v~~~~~k~vsS~~gm~~~ 223 (254)
++||+++.. +.+ + ...+++ .|++++++ +++ ...++|.+.++..
T Consensus 130 ~~Gg~~~~~-g~g---~--~~~~l~----~~~~~~vl--~~p-~~~~sT~~~~~~~ 172 (275)
T 1uek_A 130 LLGRGAEAR-GVG---E--RLKPLA----LPPVPAVV--FFP-GLRVPTPLVYRAV 172 (275)
T ss_dssp HHCSEEEEE-TTT---T--EEEEEC----CCCEEEEE--EEC-CCCCCHHHHHHTC
T ss_pred hcCCeEEEE-ccC---c--eeEEcc----CCCcEEEE--EeC-CCCCchHHHHHhC
Confidence 999998654 221 1 244553 36777544 444 3678888777643
No 15
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei}
Probab=99.78 E-value=2.3e-17 Score=150.73 Aligned_cols=174 Identities=15% Similarity=0.145 Sum_probs=121.5
Q ss_pred ccceeEEEEEccceeeeeeccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCe--eccCCcchHHH
Q 025322 4 EKWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGK--EISLGGGRYQN 81 (254)
Q Consensus 4 ~~~~~~~~a~ap~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~--~~~~~~~~~~~ 81 (254)
|..-+|++++||..|-|+ |.|... +++++|+++++ +|++++++..+ ..++..++. ..+...+.
T Consensus 16 ~~~~~mi~~~APgkinL~---GeH~~~---~Gg~~l~~aI~---~~~~v~v~~~~---~i~i~~~~~~~~~~~~~~~--- 80 (321)
T 4hac_A 16 PRGSHMVSCSAPGKIYLF---GEHAVV---YGETAIACAVE---LRTRVRAELND---SITIQSQIGRTGLDFEKHP--- 80 (321)
T ss_dssp CCSCCCEEEEEEEEEEEE---CTTTGG---GTCCEEEEEEE---EEEEEEEEECS---SEEEEETTEEESSCTTTSH---
T ss_pred CCCCCEEEEEeeEEEEEE---ccCEEE---cCCEEEEEEec---cCEEEEEEECC---CEEEEECCCCcccccchhH---
Confidence 445568999999999997 666553 56779999997 89988887643 233433332 12211122
Q ss_pred HHHHHHHHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcc
Q 025322 82 CLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGS 161 (254)
Q Consensus 82 vl~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~~ 161 (254)
.++.+...+...+ ...+++|+++++||.++|||||||.++|++.|+++++|++++.+++.++|.+++
T Consensus 81 ~~~~~~~~l~~~~-------------~~~g~~i~i~~~iP~g~GLGSSsa~~va~~~al~~l~~~~l~~~~l~~la~~~e 147 (321)
T 4hac_A 81 YVSAVIEKMRKSI-------------PINGVFLTVDSDIPVGSGLGSSAAVTIASIGALNELFGFGLSLQEIAKLGHEIE 147 (321)
T ss_dssp HHHHHHHHHTTTS-------------CCCCEEEEEEECCCSCTTCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-------------CCCCEEEEEECCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 2233333222210 146899999999999999999999999999999999999999999999999886
Q ss_pred --------C-CchhhhccCceeeeccccCCCCCeeEEEcccCCCCCceeEEEEEEcCCCcccCcHHHHHh
Q 025322 162 --------G-SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRE 222 (254)
Q Consensus 162 --------G-sa~~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~vv~v~~~~~k~vsS~~gm~~ 222 (254)
| |++.+++||+++. +. .+++. +|+++ ++++++ ..+++|.+.++.
T Consensus 148 ~~~~g~~~~~D~~~~~~Gg~~~~--~~--------~~~l~----~p~~~--~vlv~p-~~~~sT~~~~~~ 200 (321)
T 4hac_A 148 IKVQGAASPTDTYVSTFGGVVTI--PE--------RRKLK----TPDCG--IVIGDT-GVFSSTKELVAN 200 (321)
T ss_dssp HHHHSCCCSHHHHHHHHCSEEEE--TT--------CCEEC----CCCCE--EEEEEC-CCCCCHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHcCCeEEE--cC--------Cceec----cCCCE--EEEEEC-CCCccHHHHHHH
Confidence 2 7788999999866 21 12232 35666 445555 355677665543
No 16
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A* 3gon_A*
Probab=99.76 E-value=5e-17 Score=149.53 Aligned_cols=145 Identities=15% Similarity=0.106 Sum_probs=112.4
Q ss_pred EEEEEccceeeeeeccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCee--ccC----CcchHHHH
Q 025322 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE--ISL----GGGRYQNC 82 (254)
Q Consensus 9 ~~~a~ap~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~--~~~----~~~~~~~v 82 (254)
|++++||..+-|+ |.|-.. .|++++|+++|+ ++++++++..+ ..++.-++.. .+. ..+.+..+
T Consensus 3 mi~~~aPgkv~L~---GeH~v~--y~G~~~l~~Ai~---~~~~v~v~~~~---~~~i~s~~~~~~~~~~~~~~~~~v~~~ 71 (337)
T 2pg9_A 3 MIAVKTCGKLYWA---GEYAIL--EPGQLALIKDIP---IYMRAEIAFSD---SYRIYSDMFDFAVDLRPNPDYSLIQET 71 (337)
T ss_dssp CEEEEEEEEEEEE---CTTGGG--STTCEEEEEEEE---EEEEEEEEECS---SCEEEETTSSSCBCSSCCTTTHHHHHH
T ss_pred eEEEeeCceEEEe---ccceEe--cCCCEEEEEEcc---ccEEEEEEeCC---cEEEecCCCCceeeecCCCCcHHHHHH
Confidence 6889999999996 888765 689999999997 88888887653 2344433221 111 12345667
Q ss_pred HHHHHHHccccccccccchhhcccccccceEEEEEcCCCCC---CccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHh
Q 025322 83 LKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTA---AGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQ 159 (254)
Q Consensus 83 l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~---~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~ 159 (254)
++.++++++..+ ....+++|+++++||.+ +|||||||.++|++.|++++++++++.+++.++|..
T Consensus 72 i~~~~~~~~~~g------------~~~~g~~i~i~s~iP~~g~k~GLgSSaa~~va~~~al~~~~~~~l~~~~l~~la~~ 139 (337)
T 2pg9_A 72 IALMGDFLAVRG------------QNLRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSA 139 (337)
T ss_dssp HHHHHHHHHHTT------------CCCCCEEEEEECCSEETTEECSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcC------------CCCCCEEEEEEccCCCCCCCccccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 777777654211 12468999999999999 999999999999999999999999999999999987
Q ss_pred cc--------C-CchhhhccCceeee
Q 025322 160 GS--------G-SACRSLFGGFVKWI 176 (254)
Q Consensus 160 ~~--------G-sa~~s~~GG~v~~~ 176 (254)
++ | |++.|++||++.+.
T Consensus 140 ~E~~~~~~~~~~D~~~~~~Gg~~~~~ 165 (337)
T 2pg9_A 140 VLLKRGDNGSMGDLACIAAEDLVLYQ 165 (337)
T ss_dssp HHHHTTCCSCSHHHHHHHHTSCEEEE
T ss_pred HHHHhCCCCCHHHHHHHHhCCEEEEe
Confidence 63 3 77899999998754
No 17
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus}
Probab=99.76 E-value=2.5e-17 Score=148.01 Aligned_cols=170 Identities=16% Similarity=0.102 Sum_probs=116.4
Q ss_pred eEEEEEccceeeeeeccccccccCCCCCCCeeEEeeCCCCc-eeEEEEEecCCCCCce-EEecCee----ccC---Ccch
Q 025322 8 LMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHL-CTTTTVAVSPSFDQDR-MWLNGKE----ISL---GGGR 78 (254)
Q Consensus 8 ~~~~a~ap~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L-~t~t~V~~~~~~~~~~-i~lnG~~----~~~---~~~~ 78 (254)
.+++++||++|.|+ |+|.. +++.++|+++++ + +++++|+..++ .. +.+.... .+. ..+.
T Consensus 5 ~~~~~~APgkinL~---Ge~~d---~~g~~~l~~ai~---~~~~~v~v~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~ 72 (308)
T 2x7i_A 5 RKGYGESTGKIILI---GEHAV---TFGEPAIAVPFN---AGKIKVLIEALES---GNYSSIKSDVYDGMLYDAPDHLKS 72 (308)
T ss_dssp CEEEEEEEEEEEEE---EBTTC---CTTSCEEEEEEE---EEEEEEEEEECCT---TCCCEEEEEECSSCCCCTTSCHHH
T ss_pred cceEEEEeeEEEEE---ecCee---ecCCeEEEEEEc---CCEEEEEEEECCC---CCeeEEEecCCCCChhhhhHHHHH
Confidence 56889999999996 77764 578889999997 5 48888876542 12 3332211 111 1123
Q ss_pred HHHHHHHHHHHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 025322 79 YQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIAR 158 (254)
Q Consensus 79 ~~~vl~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~ 158 (254)
+..+++.+++ . ..+++|+++++||+++|||||||.++|++.|+++++|++++.+++.++|.
T Consensus 73 v~~~~~~~~~---~----------------~~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~l~~~~l~~~~l~~la~ 133 (308)
T 2x7i_A 73 LVNRFVELNN---I----------------TEPLAVTIQTNLPPSRGLGSSAAVAVAFVRASYDFLGKSLTKEELIEKAN 133 (308)
T ss_dssp HHHHHHHHTT---C----------------CSCEEEEEEECCCTTSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHh---h----------------CCCeEEEEeccCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3444443322 1 13799999999999999999999999999999999999999999999999
Q ss_pred hcc--------C-CchhhhccCceeeeccccCCCCCeeEEEcccCCCCCceeEEEEEEcCCCcccCcHHHHH
Q 025322 159 QGS--------G-SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMR 221 (254)
Q Consensus 159 ~~~--------G-sa~~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~vv~v~~~~~k~vsS~~gm~ 221 (254)
++| | +++.+++||++.++.+. ...+++.+ +++. +++++++ .+++|.+.++
T Consensus 134 ~~E~~~~g~~sG~d~~~~~~g~~~~~~~g~-------~~~~~~~~---~~~~--~vi~~~~-~~~sT~~~~~ 192 (308)
T 2x7i_A 134 WAEQIAHGKPSGIDTQTIVSGKPVWFQKGH-------AETLKTLS---LDGY--MVVIDTG-VKGSTRQAVH 192 (308)
T ss_dssp HHHHHHHSSCCHHHHHHHHHTSCEEEETTE-------EEECSCCC---BSSE--EEEEECC-C--CCSCCCC
T ss_pred HHHHHHCCCCchHHHHHhhCCceEEEEcCC-------CceEeccC---CCce--EEEEECc-CCCCHHHHHH
Confidence 884 5 45567889988766331 13344321 2344 6677763 5566666544
No 18
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Probab=99.73 E-value=9e-17 Score=144.97 Aligned_cols=145 Identities=18% Similarity=0.271 Sum_probs=106.2
Q ss_pred eEEEEEccceeeeeeccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCee------------ccC-
Q 025322 8 LMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE------------ISL- 74 (254)
Q Consensus 8 ~~~~a~ap~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~------------~~~- 74 (254)
.+++++||..|-|+ |.+... .++++|+++++ +|++++++..++ ..+.+.+.. .+.
T Consensus 4 ~~~~~~APgki~L~---geh~~~---~G~~~l~~ai~---~~~~v~v~~~~~---~~i~i~~~~~~~~~~~~~~~~~~~~ 71 (317)
T 1kkh_A 4 SHMIIETPSKVILF---GEHAVV---YGYRAISMAID---LTSTIEIKETQE---DEIILNLNDLNKSLGLNLNEIKNIN 71 (317)
T ss_dssp CCEEEEEEEEEEEE---CTTGGG---GTCCEEEEEEE---EEEEEEEEECCS---SEEEEEETTTTEEEEEETTTGGGCC
T ss_pred CCEEEEccEEEEEE---cCCeeE---cCCEEEEEEec---CeEEEEEEECCC---CeEEEEeCCCCCceEEEeccCCccC
Confidence 46789999999985 665543 47779999997 899888876532 234443211 011
Q ss_pred Cc--chHHHHHHHHHHHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHH
Q 025322 75 GG--GRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQ 152 (254)
Q Consensus 75 ~~--~~~~~vl~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~e 152 (254)
.. +.+..+++.++..+...+ . ....+++|+++++||.++|||||||.++|++.|+++++|++++.++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~-----~------~~~~g~~i~i~~~iP~~~GLGsSsa~~~a~~~al~~l~~~~l~~~~ 140 (317)
T 1kkh_A 72 PNNFGDFKYCLCAIKNTLDYLN-----I------EPKTGFKINISSKIPISCGLGSSASITIGTIKAVSGFYNKELKDDE 140 (317)
T ss_dssp GGGSGGGHHHHHHHHHHHHHTT-----C------CCCSCEEEEEEECSCSSSSSCHHHHHHHHHHHHHHHTTTCCCCHHH
T ss_pred cccchHHHHHHHHHHHHHHhhc-----c------cCCCCeEEEEecCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 11 224455555544211100 0 0135899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcc--------C-CchhhhccCceee
Q 025322 153 LSAIARQGS--------G-SACRSLFGGFVKW 175 (254)
Q Consensus 153 l~~iA~~~~--------G-sa~~s~~GG~v~~ 175 (254)
+.++|.++| | |++++++||++++
T Consensus 141 l~~~a~~~E~~~~g~~sg~D~~~~~~Gg~~~~ 172 (317)
T 1kkh_A 141 IAKLGYMVEKEIQGKASITDTSTITYKGILEI 172 (317)
T ss_dssp HHHHHHHHHHHHSSSCCSHHHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHhCCeEEE
Confidence 999999875 5 8889999999866
No 19
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*
Probab=99.69 E-value=2.3e-16 Score=143.75 Aligned_cols=126 Identities=17% Similarity=0.155 Sum_probs=93.8
Q ss_pred EEEEEccceeeeeeccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCee-------c--c--CC-c
Q 025322 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE-------I--S--LG-G 76 (254)
Q Consensus 9 ~~~a~ap~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~-------~--~--~~-~ 76 (254)
|++++||..|.|+ |+|..-+..+ +|+++++ +|++++++..+ ...+.+.+.. . + .. .
T Consensus 1 m~~~~aP~ki~L~---Ge~~d~~~~~---~l~~ai~---~~~~v~v~~~~---~~~i~i~~~~~~~~~~~l~~~~~~~~~ 68 (350)
T 2cz9_A 1 MIKVKSPGRVNLI---GEHTDYTYGY---VMPMAIN---LYTKIEAEKHG---EVILYSEHFGEERKFSLNDLRKENSWI 68 (350)
T ss_dssp CEEEEEEEEEEEE---CTTCGGGTCE---EEEEEEE---EEEEEEEEEES---SEEEEETTTTEEEEECTTCCCCCSSTH
T ss_pred CeEEEeccEEEEe---ecChhhCCCE---EEEEEee---ceEEEEEEECC---CCeEEEEECCCCccccccCCCCCCcHH
Confidence 5788999999995 8887755555 8999997 89988887653 2335553321 1 1 11 1
Q ss_pred chHHHHHHHHHHHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHH
Q 025322 77 GRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAI 156 (254)
Q Consensus 77 ~~~~~vl~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~i 156 (254)
+.+..+++.+++. +. ...+++|+++++||+++|||||||.++|++.|+++++|.+++.+++.++
T Consensus 69 ~~~~~~~~~l~~~-~~---------------~~~g~~i~i~s~IP~g~GLGSSaA~~vA~~~al~~l~~~~l~~~el~~l 132 (350)
T 2cz9_A 69 DYVKGIFWVLKES-DY---------------EVGGIKGRVSGNLPLGAGLSSSASFEVGILETLDKLYNLKLDSLSKVLL 132 (350)
T ss_dssp HHHHHHHHHHHHT-TC---------------CCCEEEEEEECSCCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhc-CC---------------CCCCeEEEEECCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 2333344444332 21 1257999999999999999999999999999999999999999999999
Q ss_pred HHhccC
Q 025322 157 ARQGSG 162 (254)
Q Consensus 157 A~~~~G 162 (254)
|..+++
T Consensus 133 a~~~e~ 138 (350)
T 2cz9_A 133 AKKAEN 138 (350)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998874
No 20
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Probab=99.69 E-value=1.5e-15 Score=142.99 Aligned_cols=166 Identities=15% Similarity=0.148 Sum_probs=113.5
Q ss_pred EEEEccceeeeeeccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCe--------eccC-------
Q 025322 10 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGK--------EISL------- 74 (254)
Q Consensus 10 ~~a~ap~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~--------~~~~------- 74 (254)
++++||..|.|+ |++... .++++|+++++ ++++++++..++ ...++...+. +.+.
T Consensus 49 ~~~~APgkv~L~---Geh~d~---~G~~~l~~aI~---l~~~v~v~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 118 (419)
T 1pie_A 49 EYFFSPGRINLI---GEHTDY---NGGYVFPASIT---IGTTGLARLRED-KKVKLYSENFPKLGVIEFDLDEVEKKDGE 118 (419)
T ss_dssp EEEEEEEEEEEE---CCSCTT---TTCEEEEEEEE---EEEEEEEEECSS-SEEEEEETTCGGGCCEEEETTCTTSCCTT
T ss_pred EEEEeeEEEEEc---ccceee---CCCEEEEEEEc---ccEEEEEEECCC-CEEEEEECCCCCcceeEEecccccCCCCc
Confidence 789999999996 888553 56679999997 899888876532 1123333331 1110
Q ss_pred -CcchHHHHHHHHHHHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHH
Q 025322 75 -GGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQL 153 (254)
Q Consensus 75 -~~~~~~~vl~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el 153 (254)
..+.+..+++.+++. +. . ...+++|.++++||+++|||||||.++|++.|+++++|++++.++|
T Consensus 119 ~~~n~v~~~~~~l~~~-g~--------~------~~~g~~i~i~s~IP~gaGLGSSaA~~vA~~~al~~l~g~~ls~~el 183 (419)
T 1pie_A 119 LWSNYVKGMIVMLKGA-GY--------E------IDKGFELLIKGEIPTASGLSSSASLELLVGVVLDDLFNLNVPRLEL 183 (419)
T ss_dssp CTHHHHHHHHHHHHHT-TC--------C------CCSCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred CHHHHHHHHHHHHHHh-CC--------C------CCCCEEEEEECCCCCCCChhHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 012344455555443 11 0 0258999999999999999999999999999999999999999999
Q ss_pred HHHHHhcc--------C--CchhhhccC--ceeeeccccCCCCCeeEEEcccCCCCCceeEEEEEEcC
Q 025322 154 SAIARQGS--------G--SACRSLFGG--FVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSS 209 (254)
Q Consensus 154 ~~iA~~~~--------G--sa~~s~~GG--~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~vv~v~~~ 209 (254)
.++|.++| | |.++|++|| .+++.++.. ....+++.+ +++++++ ++++
T Consensus 184 ~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~d~~~-----~~~~~l~~~--~~~~~~v--l~~~ 242 (419)
T 1pie_A 184 VQLGQKTENDYIGVNSGILDQFAIGFGEVKKAIELDCNT-----LKYEMVPVE--LRDYDIV--IMNT 242 (419)
T ss_dssp HHHHHHHHHHTTCCCCCSHHHHHHHHCBTTEEEEEETTT-----CCEEEEECC--CTTEEEE--EEEC
T ss_pred HHHHHHHHHHhcCCCccchhHHHHHhccCCeEEEeecCC-----CceEEeecC--CCCcEEE--EEEC
Confidence 99998863 3 678899998 344443321 124555422 2567744 4555
No 21
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}
Probab=99.64 E-value=3.1e-14 Score=132.49 Aligned_cols=147 Identities=13% Similarity=0.133 Sum_probs=108.0
Q ss_pred eeEEEEEccceeeeeeccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCee----------ccC--
Q 025322 7 VLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE----------ISL-- 74 (254)
Q Consensus 7 ~~~~~a~ap~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~----------~~~-- 74 (254)
..|++++||..+-|+ |.|-..+ |+.++|+++|+ ++++++++..++ .++...+.. .+.
T Consensus 4 ~~~i~~~APGrv~L~---GEh~~~~--~g~~~l~~Ai~---~~~~v~v~~~~~---~~i~s~~~~~~~~~~~~~~~~~~~ 72 (365)
T 3k17_A 4 KNKLQVKIPGKLYVA---GEYAVVE--SGHTAILTAVN---RYITLTLEDSER---NELWIPHYENPVSWPIGGELKPDG 72 (365)
T ss_dssp -CCEEEEEEEEEEEE---CTTGGGS--TTCEEEEEEEE---EEEEEEEEECSS---CEEECTTCSSCBCCCTTSCCCCSC
T ss_pred eeEEEEEecceEEEe---cccEEec--CCCEEEEEEcc---CcEEEEEEECCC---cEEEecCCCcceeeecccCCCCCC
Confidence 348899999999996 7776531 67779999997 788888876542 234433211 000
Q ss_pred -CcchHHHHHHHHHHHccccccccccchhhcccccccceEEEEEcCCCC----CCccccchhhHHHHHHHHHHHhCCCCC
Q 025322 75 -GGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPT----AAGLASSAAGFACLVFSLAKLMNLKEN 149 (254)
Q Consensus 75 -~~~~~~~vl~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~----~~GLgSSaA~~aA~~~A~~~l~~~~l~ 149 (254)
..+.+..+++.+.+++...+ ....+++|.++++||. ++|||||||.++|++.|++++++++++
T Consensus 73 ~~~~yv~~~i~~~~~~~~~~g------------~~~~g~~i~i~s~iP~~~g~~~GLgSSaa~~va~~~al~~~~~~~l~ 140 (365)
T 3k17_A 73 EHWTFTAEAINIATTFLKSEG------------IELTPVKMVIETELIDQSGAKYGLGSSAAATVAVINALMTKFYPEIS 140 (365)
T ss_dssp GGGHHHHHHHHHHHHHHHHTT------------CCCCCEEEEEEESSBCTTSCBCSSCHHHHHHHHHHHHHHHHHCTTSC
T ss_pred ChHHHHHHHHHHHHHHHHhcC------------CCCCCEEEEEEcCCCCCCCCCCcccHHHHHHHHHHHHHHHHhCCCCC
Confidence 11235566666665543211 1236899999999996 679999999999999999999999999
Q ss_pred HHHHHHHHHhcc--------C-CchhhhccCceeee
Q 025322 150 QSQLSAIARQGS--------G-SACRSLFGGFVKWI 176 (254)
Q Consensus 150 ~~el~~iA~~~~--------G-sa~~s~~GG~v~~~ 176 (254)
.+++.++|...+ | |.+.|+|||++.+.
T Consensus 141 ~~~l~~~a~~~E~~~~g~~~g~D~~~~~~Gg~~~~~ 176 (365)
T 3k17_A 141 MLKKFKLAALSHLVVQGNGSCGDIASCMYGGWIAYT 176 (365)
T ss_dssp HHHHHHHHHHHHHHHHSSCCSHHHHHHHHCSEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCcccHHHHhcCCEEEEe
Confidence 999999997643 3 77899999998765
No 22
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A
Probab=99.63 E-value=3.2e-14 Score=132.67 Aligned_cols=176 Identities=19% Similarity=0.224 Sum_probs=111.4
Q ss_pred EEEEEccceeeeeeccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCee---------cc-CC---
Q 025322 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE---------IS-LG--- 75 (254)
Q Consensus 9 ~~~a~ap~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~---------~~-~~--- 75 (254)
++.++||..|.|+ |+|-..+ +.++|.++++ +|++++++..++ ...++...+.. .. ..
T Consensus 5 ~~~~~APgrv~L~---Geh~d~~---g~~~l~~ai~---~~~~v~v~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 74 (395)
T 1kvk_A 5 VLLVSAPGKVILH---GEHAVVH---GKVALAVALN---LRTFLVLRPQSN-GKVSLNLPNVGIKQVWDVATLQLLDTGF 74 (395)
T ss_dssp CEEEEEEEEEEEE---CTTGGGG---TCCEEEEEEE---EEEEEEEEECSS-SEEEEEETTTTEEEEEEHHHHHTSCC--
T ss_pred cEEEEeCeEEEEe---cCCeeeE---CCEeeeeEee---ccEEEEEEECCC-CeEEEEcCCCCceEEEEhHhhhhhhccc
Confidence 5789999999996 8887755 4559999997 899988876532 11222222110 00 00
Q ss_pred --------------------------cch-----HHHHHHHHHHHccccccccccchhhcccccccceEEEEEcCCCCCC
Q 025322 76 --------------------------GGR-----YQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAA 124 (254)
Q Consensus 76 --------------------------~~~-----~~~vl~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~ 124 (254)
.+. +..+++.+++..+.. ....+++|+++++||.++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~-------------~~~~g~~i~i~s~iP~g~ 141 (395)
T 1kvk_A 75 LEQGDVPAPTLEQLEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICRKQ-------------RTLPSLDIMVWSELPPGA 141 (395)
T ss_dssp --------------CHHHHHHTSSCCCSCTTHHHHHHHHHHHHHHHTTS-------------SSCCCEEEEEEESSCTTS
T ss_pred ccccccccccHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHhccc-------------cCCCCEEEEEEecCCCCC
Confidence 000 111222222221110 013589999999999999
Q ss_pred ccccchhhHHHHHHHHHHHhCC-----CCC-------HHHHHHH---HHhcc------C---CchhhhccCceeeecccc
Q 025322 125 GLASSAAGFACLVFSLAKLMNL-----KEN-------QSQLSAI---ARQGS------G---SACRSLFGGFVKWILGKE 180 (254)
Q Consensus 125 GLgSSaA~~aA~~~A~~~l~~~-----~l~-------~~el~~i---A~~~~------G---sa~~s~~GG~v~~~~~~~ 180 (254)
|||||||.++|++.|+++++|. +++ .+++.++ |..+| + |.+.|++||++.+..+
T Consensus 142 GLGSSaA~~va~~~al~~l~~~~~~~~~l~~~~~~~~~~~l~~l~~~A~~~E~~~~G~~sG~D~~~~~~Gg~~~~~~~-- 219 (395)
T 1kvk_A 142 GLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEEDLKSINKWAYEGERVIHGNPSGVDNSVSTWGGALRYQQG-- 219 (395)
T ss_dssp SSCHHHHHHHHHHHHHHHHTTSSCCGGGGCCSEECCCHHHHHHHHHHHHHHHHHHHSSCCSHHHHHHHHCSEEEESSS--
T ss_pred CccHHHHHHHHHHHHHHHHhCcccccccccccccccchhhHHHHHHHHHHhhheEecCCCCcchHHhhhcceEEEcCC--
Confidence 9999999999999999999998 788 8555555 44333 2 5667999999876322
Q ss_pred CCCCCeeEEEcccCCCCCceeEEEEEEcCCCcccCcHHHHH
Q 025322 181 GNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMR 221 (254)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~l~~vv~v~~~~~k~vsS~~gm~ 221 (254)
...+++. .++++ ++++++ ..+.+|.+.++
T Consensus 220 ------~~~~l~~---~~~~~--~vl~~~-~~~~~T~~~~~ 248 (395)
T 1kvk_A 220 ------KMSSLKR---LPALQ--ILLTNT-KVPRSTKALVA 248 (395)
T ss_dssp ------CEEECSC---CCCEE--EEEEEC-CCCCCHHHHHH
T ss_pred ------CceeccC---CCCcE--EEEEEC-CCCCchHHHHH
Confidence 1455542 26677 445555 35566655443
No 23
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Probab=99.61 E-value=1.3e-14 Score=135.64 Aligned_cols=136 Identities=14% Similarity=0.108 Sum_probs=97.1
Q ss_pred EEEEEccceeeeeeccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCee----------cc-----
Q 025322 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE----------IS----- 73 (254)
Q Consensus 9 ~~~a~ap~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~----------~~----- 73 (254)
+++++||..|.|+ |+|-.-..+ .+|+++++ ++++++++..++ ...++...+.. .+
T Consensus 36 ~~~~~APgkv~L~---Geh~Dy~~~---~~l~~ai~---~~~~v~v~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 105 (399)
T 1wuu_A 36 ELAVSAPGRVNLI---GEHTDYNQG---LVLPMALE---LMTVLVGSPRKD-GLVSLLTTSEGADEPQRLQFPLPTAQRS 105 (399)
T ss_dssp SEEEEEEEEEEEE---CTTCGGGTC---EEEEEEEE---EEEEEEEEEETT-CEEEEEECCSSSCSCSEEEEECCCSSCC
T ss_pred CEEEEeeeeEEEe---ccccccCCC---EEEeEEec---ccEEEEEEECCC-CeEEEEECCCCCccccceEEecCccccc
Confidence 5789999999996 887652222 39999997 899888876432 12223322211 11
Q ss_pred --C----CcchHHHHHHHHHHHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCC
Q 025322 74 --L----GGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLK 147 (254)
Q Consensus 74 --~----~~~~~~~vl~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~ 147 (254)
. ..+.+..+++.+ .. ....+++|.++++||+++|||||||.++|++.|+++++|++
T Consensus 106 ~~~~~~~~~n~v~~a~~~l----~~--------------~~~~g~~i~i~s~IP~gaGLGSSaA~~vA~~~al~~l~~~~ 167 (399)
T 1wuu_A 106 LEPGTPRWANYVKGVIQYY----PA--------------APLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDS 167 (399)
T ss_dssp CCCCSSGGGHHHHHHHHHC----SS--------------SCCCEEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHSCCC
T ss_pred cccCCCCHHHHHHHHHHHh----cC--------------CCCCCeEEEEECCCCCCCCccHHHHHHHHHHHHHHHHhCCC
Confidence 0 012233333322 11 11358999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhc--------cC--CchhhhccCc
Q 025322 148 ENQSQLSAIARQG--------SG--SACRSLFGGF 172 (254)
Q Consensus 148 l~~~el~~iA~~~--------~G--sa~~s~~GG~ 172 (254)
++.+++.++|.++ +| +...|++||+
T Consensus 168 l~~~~l~~la~~~E~~~~G~~~G~~D~~~~~~Gg~ 202 (399)
T 1wuu_A 168 GTIAARAQVCQQAEHSFAGMPCGIMDQFISLMGQK 202 (399)
T ss_dssp SCHHHHHHHHHHHHHHHTCCCCCSHHHHHHHHCCT
T ss_pred CCHHHHHHHHHHHHHHhcCCCCccHHHHHHHhccC
Confidence 9999999999876 34 6678999995
No 24
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A
Probab=99.61 E-value=7.9e-14 Score=125.45 Aligned_cols=145 Identities=15% Similarity=0.099 Sum_probs=109.1
Q ss_pred EEEEEccceeeeeeccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCee--ccC----CcchHHHH
Q 025322 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE--ISL----GGGRYQNC 82 (254)
Q Consensus 9 ~~~a~ap~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~--~~~----~~~~~~~v 82 (254)
|++++||..+-| .|.|-.. .|+.++|.++++ +|++++|+..+ ..++..+... .+. ..+.+...
T Consensus 1 mi~v~apGKviL---~GEhaVv--~~G~~Ala~ai~---~~~~v~i~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~ 69 (335)
T 3gon_A 1 MIAVKTCGKLYW---AGEYAIL--EPGQLALIKDIP---IYMRAEIAFSD---SYRIYSDMFDFAVDLRPNPDYSLIQET 69 (335)
T ss_dssp CEEEEEEEEEEE---ECTTGGG--STTCEEEEEEEE---EEEEEEEEECS---SCEEEETTSSSCBCSSCCTTTHHHHHH
T ss_pred CEEEEECCEEEE---EeeeeEE--cCCCcEEEEEec---ceEEEEEEECC---CCEEEEeCCCcccccCcCCCcHHHHHH
Confidence 789999999998 7999987 467779999997 78888887754 3445543221 111 12234445
Q ss_pred HHHHHHHccccccccccchhhcccccccceEEEEEcCCCCC---CccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHh
Q 025322 83 LKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTA---AGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQ 159 (254)
Q Consensus 83 l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~---~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~ 159 (254)
++.+.+++...+ ....++.|.+.+++|.+ +|||||||..+|++.|++.+++++++.+++.++|..
T Consensus 70 i~~~~~~l~~~~------------~~~~~~~i~I~s~lp~~~~~~GLgSSaa~~va~~~al~~~~~~~~~~~~l~~la~~ 137 (335)
T 3gon_A 70 IALMGDFLAVRG------------QNLRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSA 137 (335)
T ss_dssp HHHHHHHHHHTT------------CCCCCEEEEEECCSEETTEECSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcC------------CCCCceEEEEEecCCcccCCCCcchHHHHHHHHHHhhhhcccccchHHHHHHHHHH
Confidence 555555443211 12468999999999987 599999999999999999999999999999999976
Q ss_pred cc--------C-CchhhhccCceeee
Q 025322 160 GS--------G-SACRSLFGGFVKWI 176 (254)
Q Consensus 160 ~~--------G-sa~~s~~GG~v~~~ 176 (254)
.+ | |.+.|.|||++.+.
T Consensus 138 ~E~~~~g~~sg~D~a~a~~Gg~i~~~ 163 (335)
T 3gon_A 138 VLLKRGDNGSMGDLACIAAEDLVLYQ 163 (335)
T ss_dssp HHHHTTCCSCSHHHHHHHHTSCEEEE
T ss_pred HHHHhcCCCCCCCcceeecCCeEEEE
Confidence 53 3 67889999998654
No 25
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Probab=99.60 E-value=2.8e-14 Score=132.26 Aligned_cols=140 Identities=18% Similarity=0.269 Sum_probs=104.3
Q ss_pred EEEEEccceeeeeeccccc-cc-----cCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEe--cCe----ecc---
Q 025322 9 MVTAQTPTNIAVIKYWGKR-DE-----TLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWL--NGK----EIS--- 73 (254)
Q Consensus 9 ~~~a~ap~nIaliKYwGk~-d~-----~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~l--nG~----~~~--- 73 (254)
|++++||.-|-|+ |.| |- .+..+ +|.++++ ++++++++..++ ..+.+ ++. ..+
T Consensus 3 mi~~~APgRvnL~---GehtD~~~~~~~~gG~---vl~~AId---~~~~v~i~~~~d---~~i~i~s~~~~~~~~~~~~~ 70 (357)
T 3k85_A 3 LVRSKAPLRLGLA---GGGSDVSPYSDIYGGL---ILNATIN---LYAYCTIEETNS---GRIEINAYDAQCCKSYLSMS 70 (357)
T ss_dssp CEEEEEEEEEEEE---CTTTTSTTHHHHTCEE---EEEEEEE---EEEEEEEEECSS---SEEEEEETTTTEEEEEECCS
T ss_pred EEEEECceEEEEe---cCCccCcchhhcCCCE---EEEEEEe---CcEEEEEEECCC---CeEEEEECCCCceEEEeccc
Confidence 6889999999996 554 32 12233 8999997 899888876542 23333 211 111
Q ss_pred -----CCcchHHHHHHHHHHHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCC
Q 025322 74 -----LGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKE 148 (254)
Q Consensus 74 -----~~~~~~~~vl~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l 148 (254)
...+.+..+++.+++.... ...+++|.++++||.++|||||||.++|++.|+++++++++
T Consensus 71 ~~~~~~~~~~v~~~~~~l~~~~~~---------------~~~g~~i~i~~~iP~g~GLgSSaa~~va~~~al~~~~~~~l 135 (357)
T 3k85_A 71 QLEIDGEASLIKGVYNRIIRDYRL---------------EPKSFKITTYNDAPAGSGLGTSSTMVVCILKAFIEWLSLPL 135 (357)
T ss_dssp SCCCCSSSHHHHHHHHHHHHHTTC---------------CCCCEEEEEEESSCSSSSSCHHHHHHHHHHHHHHHHHTCCC
T ss_pred cccccchHHHHHHHHHHHHHhcCC---------------CCCCEEEEEecCCCCCCCchHHHHHHHHHHHHHHHHhCCCC
Confidence 1234566777777664321 13589999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhcc--------C--CchhhhccCceee
Q 025322 149 NQSQLSAIARQGS--------G--SACRSLFGGFVKW 175 (254)
Q Consensus 149 ~~~el~~iA~~~~--------G--sa~~s~~GG~v~~ 175 (254)
+.+++.++|..+| | |...+.|||++..
T Consensus 136 ~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~Gg~~~~ 172 (357)
T 3k85_A 136 GDYETSRLAYEIERKDLGLSGGKQDQYAAAFGGFNYM 172 (357)
T ss_dssp CHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHCSEEEE
T ss_pred CHHHHHHHHHHHHHHHccCCCcHHHHHHHHhCCceEE
Confidence 9999999999886 5 5566889999853
No 26
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Probab=99.57 E-value=7.9e-14 Score=133.92 Aligned_cols=166 Identities=13% Similarity=0.105 Sum_probs=113.5
Q ss_pred EEEEEccceeeeeeccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCe-----ec--c-----C-C
Q 025322 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGK-----EI--S-----L-G 75 (254)
Q Consensus 9 ~~~a~ap~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~-----~~--~-----~-~ 75 (254)
++.++||..|.|+ |+|-. .|++++|+++++ ++++++++..++ ...++...+. .. + . .
T Consensus 55 ~~~~~APgrv~L~---Geh~D---~~g~~vl~~AI~---~~~~v~v~~~~~-~~i~i~~~~~~~~~~~~~~~~l~~~~~~ 124 (478)
T 2a2c_A 55 KFYVRAPGRVNII---GEHID---YCGYSVLPMAVE---QDVLIAVEPVKT-YALQLANTNPLYPDFSTSANNIQIDKTK 124 (478)
T ss_dssp SEEEEEEEEEEEE---CTTCG---GGTCCBEEEEEE---EEEEEEEEECSS-SCEEEEESSTTSCCEEECCCCC--CCSS
T ss_pred CEEEEeceEEEEe---cccee---eCCCeEEEEEec---ccEEEEEEECCC-CeEEEEECCCCCcceeccchhcccCCCc
Confidence 4788999999996 88754 477899999997 899888876532 1233322221 00 0 1 1
Q ss_pred c---chHHHHHHHHHHHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHH
Q 025322 76 G---GRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQ 152 (254)
Q Consensus 76 ~---~~~~~vl~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~e 152 (254)
. +.+..+++.+.+.++.. ...+++|.++++||+++|||||||.++|++.|++.++|.+++.++
T Consensus 125 ~~~~n~v~~a~~~v~~~~~~~--------------~~~g~~i~i~s~IP~g~GLgSSAA~~va~~~al~~~~~~~ls~~~ 190 (478)
T 2a2c_A 125 PLWHNYFLCGLKGIQEHFGLS--------------NLTGMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGRNLSKVE 190 (478)
T ss_dssp CCHHHHHHHHHHHHHHHTTCC--------------SCCCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHHTCCCCHHH
T ss_pred ccHHHHHHHHHHHHHHHHhcc--------------CCCceEEEEECCCCCCCCchHHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 1 22333445555554320 135899999999999999999999999999999999999999999
Q ss_pred HHHHHHhccC---------Cchhhhcc---CceeeeccccCCCCCeeEEEcccCCCCCceeEEEEEEcC
Q 025322 153 LSAIARQGSG---------SACRSLFG---GFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSS 209 (254)
Q Consensus 153 l~~iA~~~~G---------sa~~s~~G---G~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~vv~v~~~ 209 (254)
+.++|..+|. +...|++| |++..+..+ ....+++.+ +++. ++|+++
T Consensus 191 l~~la~~~E~~~g~~~g~~D~~a~~~G~~g~~~~i~f~~------~~~~~~~~~---~~~~--~vi~~s 248 (478)
T 2a2c_A 191 LAEICAKSERYIGTEGGGMDQSISFLAEEGTAKLIEFSP------LRATDVKLP---SGAV--FVIANS 248 (478)
T ss_dssp HHHHHHHHHGGGTCCCCSHHHHHHHHCBTTBEEEEETTT------TEEEEECCC---TTEE--EEEEEC
T ss_pred HHHHHHHHHhhcCCCCccHHHHHHHhccCCcEEEEEcCC------CceEEecCC---CCcE--EEEEeC
Confidence 9999988862 44568897 665444321 234455432 4566 445555
No 27
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Probab=98.77 E-value=6.2e-07 Score=87.26 Aligned_cols=206 Identities=13% Similarity=0.149 Sum_probs=121.7
Q ss_pred EEEEEccceeeeeeccccccccCCCCCCCeeEEeeCCCCceeEEEEEec--CCCCCce------------EEe--cCe--
Q 025322 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVS--PSFDQDR------------MWL--NGK-- 70 (254)
Q Consensus 9 ~~~a~ap~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~--~~~~~~~------------i~l--nG~-- 70 (254)
...++||.-+-|| |.|=.-+.. ..|.++++ +++.+.|... ++ ...+ +.+ ++.
T Consensus 39 ~~v~~APGRVnLi---GEHtDyngG---~VLp~AI~---~~~~vav~~~~~~d-~~i~i~S~~~~~~~~~~~l~~~~~~~ 108 (520)
T 3v2u_C 39 DFIARSPGRVNLI---GEHIDYCDF---SVLPLAID---VDMLCAVKILDEKN-PSITLTNADPKFAQRKFDLPLDGSYM 108 (520)
T ss_dssp SEEEEEEEEEEEE---CTTCGGGTC---CBEEEEEE---EEEEEEEEECCCSS-CEEEEEESSTTSCCEEEECCTTCCCC
T ss_pred CEEEEcceeEEEe---ccCeeeCCC---EEEEEEee---cceEEEEEeccCCC-CEEEEEECCCCCCceEEEeccCcccc
Confidence 3568999999996 887554444 49999997 7888888764 21 1111 222 211
Q ss_pred eccCC-c---chHHHHHHHHHHHccccc-cccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHh-
Q 025322 71 EISLG-G---GRYQNCLKEIRSRACDVE-DTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLM- 144 (254)
Q Consensus 71 ~~~~~-~---~~~~~vl~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~- 144 (254)
.++.. . +.+..+++.+.+++...+ ....| ....++.|.+.++||.|+|| |||..+|++.|++.++
T Consensus 109 ~i~~~~~~W~~Yv~g~i~~v~~~l~~~~~~~~~g-------~~~~G~~i~i~s~vP~gsGL--SAA~~va~~~Al~~~~~ 179 (520)
T 3v2u_C 109 AIDPSVSEWSNYFKCGLHVAHSYLKKIAPERFNN-------TPLVGAQIFCQSDIPTGGGL--SSAFTCAAALATIRANM 179 (520)
T ss_dssp CCCTTSCCHHHHHHHHHHHHHHHHHHHCHHHHSS-------SCCCCEEEEEEECCCTTSSH--HHHHHHHHHHHHHHHHH
T ss_pred ccCcccccHHHHHHHHHHHHHHHHHhhccccccc-------CCCCceEEEEecCCCCCCCH--HHHHHHHHHHHHHHHhh
Confidence 11111 1 223333322222221100 00000 01368999999999999999 9999999999999998
Q ss_pred --CCCCCHHHHHHHHHhcc---C------CchhhhccC---ceeeeccccCCCCCeeEEEcccCC-CCCceeEEEEEEcC
Q 025322 145 --NLKENQSQLSAIARQGS---G------SACRSLFGG---FVKWILGKEGNGSDSLAVQLVDEE-HWNDLVIIIAVVSS 209 (254)
Q Consensus 145 --~~~l~~~el~~iA~~~~---G------sa~~s~~GG---~v~~~~~~~~~~~~~~~~~l~~~~-~~~~l~~vv~v~~~ 209 (254)
+++++..++.++|...+ | +-..|++|| ++.++..+. .-..+++.++ ..+++. ++|++.
T Consensus 180 g~~~~l~~~~la~la~~aE~~vG~~~G~mDQ~as~~G~~g~~l~id~~~~-----l~~~~v~~p~~~~~~~~--~vI~ns 252 (520)
T 3v2u_C 180 GKNFDISKKDLTRITAVAEHYVGVNNGGMDQATSVYGEEDHALYVEFRPK-----LKATPFKFPQLKNHEIS--FVIANT 252 (520)
T ss_dssp CTTCCCBHHHHHHHHTTGGGGGTCCCCSHHHHHHHHCBTTBEEEEECSSS-----CEEEEECCCCCSSCEEE--EEEEEC
T ss_pred ccCCCCCHHHHHHHHHHHHHHhCCCCchhhHHHHHhCCCCeEEEEEcCCC-----ceeEEeeCCCccCCCeE--EEEEEC
Confidence 77899999999998765 2 335699998 555554320 1133343221 123565 667776
Q ss_pred CCcccCcHHHHHhHhhcCccHHHHHHHHHhhHHHHHHh
Q 025322 210 RQKETSSTTGMRESVETSLLLQHRAKVQFLILSDCLED 247 (254)
Q Consensus 210 ~~k~vsS~~gm~~~v~ts~~~~~r~~~~~~~~~~~~e~ 247 (254)
.- .+.. +. + ...-|+.|...-+...+.+...
T Consensus 253 ~v---~~~k-~~-l--a~s~YN~Rr~eCe~Aa~~L~~~ 283 (520)
T 3v2u_C 253 LV---KSNK-FE-T--APTNYNLRVIEVTVAANALATR 283 (520)
T ss_dssp CC---CCCH-HH-H--TTTTHHHHHHHHHHHHHHHHHH
T ss_pred CC---cccc-cc-c--ccchhhHHHHHHHHHHHHHHHh
Confidence 41 1111 11 2 2346899988888877776543
No 28
>1z0w_A Putative protease LA homolog type; ATP-dependent protease, catalytic Ser-Lys DYAD, B-type LON, hydrolase; 1.20A {Archaeoglobus fulgidus} PDB: 1z0b_A 1z0c_A 1z0e_A 1z0g_A 1z0t_A 1z0v_A
Probab=26.75 E-value=96 Score=25.81 Aligned_cols=31 Identities=10% Similarity=0.242 Sum_probs=16.3
Q ss_pred CCCCC-CccccchhhHHHHHHHHHHHhCCCCC
Q 025322 119 NFPTA-AGLASSAAGFACLVFSLAKLMNLKEN 149 (254)
Q Consensus 119 ~iP~~-~GLgSSaA~~aA~~~A~~~l~~~~l~ 149 (254)
++|.+ --..+++++.+-.+.-++.+.+.+++
T Consensus 83 nl~~g~~~k~GpsadLaia~AilSa~~~~p~~ 114 (207)
T 1z0w_A 83 QFVGTYEGVEGDSASISIATAVISAIEGIPVD 114 (207)
T ss_dssp EESSCCTTEECCTTBHHHHHHHHHHHHTCCEE
T ss_pred EEecccccccCCcchHHHHHHHHHHcCCCCCC
Confidence 45665 34455555554444444555566654
No 29
>3j20_K 30S ribosomal protein S9P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.68 E-value=2.3e+02 Score=22.20 Aligned_cols=23 Identities=17% Similarity=0.461 Sum_probs=15.3
Q ss_pred eEEEEEecCCCCCceEEecCeeccC
Q 025322 50 TTTTVAVSPSFDQDRMWLNGKEISL 74 (254)
Q Consensus 50 t~t~V~~~~~~~~~~i~lnG~~~~~ 74 (254)
+.+.|.+.++ ...|.|||.+.+.
T Consensus 13 AvArv~l~~G--~G~i~VNg~~l~~ 35 (135)
T 3j20_K 13 AIARAVIREG--KGRVRINGKPVEI 35 (135)
T ss_dssp EEEEEEEEES--SCCEEETTEEGGG
T ss_pred EEEEEEEEeC--ceEEEECCeeHHH
Confidence 3445555544 3579999998765
No 30
>2xzm_I RPS16E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_I
Probab=24.60 E-value=2.2e+02 Score=22.62 Aligned_cols=77 Identities=17% Similarity=0.186 Sum_probs=38.1
Q ss_pred eEEEEEecCCCCCceEEecCeeccC-CcchHHHHHHHHHHHccccccccccchhhcccccccceEEEEEcCCCCCCcccc
Q 025322 50 TTTTVAVSPSFDQDRMWLNGKEISL-GGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLAS 128 (254)
Q Consensus 50 t~t~V~~~~~~~~~~i~lnG~~~~~-~~~~~~~vl~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgS 128 (254)
+.+.|.+.++ ...|.|||.+.+. +.+.....+..=...++. +.+...++.|.+ .|-|+.+
T Consensus 18 AvArv~l~~G--~G~i~VNg~~l~yf~~~~~r~~v~~Pl~l~~~------------~~~~~~Di~v~V-----~GGG~sg 78 (145)
T 2xzm_I 18 AVAVASVRPG--KGLLKVNGSPIDMINPQILQAKIYEPILLLGQ------------QKFANLDIRIRV-----RGSGYTS 78 (145)
T ss_dssp EEEEEEEEES--SCEEEESSSBGGGCSSTTTHHHHHHHHHHHCH------------HHHHHEEEEEEE-----CCSSHHH
T ss_pred EEEEEEEEeC--ceEEEECCEeHHHcCcHHHHHHHHHHHHHhCh------------hhhCceeEEEEE-----EcCCeec
Confidence 4455555554 3679999998763 222222222222223320 001123444444 3555544
Q ss_pred ch-hhHHHHHHHHHHHhC
Q 025322 129 SA-AGFACLVFSLAKLMN 145 (254)
Q Consensus 129 Sa-A~~aA~~~A~~~l~~ 145 (254)
=| |.-.|++.||..+++
T Consensus 79 QA~AiR~aIArAL~~~~~ 96 (145)
T 2xzm_I 79 QVYAIRQALSKGIVAYHA 96 (145)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 33 444577788888765
No 31
>3u5c_Q RP61R, 40S ribosomal protein S16-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_I 3o30_J 3o2z_J 3u5g_Q 1s1h_I 3jyv_I*
Probab=22.21 E-value=2.9e+02 Score=21.82 Aligned_cols=82 Identities=15% Similarity=0.093 Sum_probs=40.8
Q ss_pred eEEEEEecCCCCCceEEecCeeccC-CcchHHHHHHHHHHHccccccccccchhhcccccccceEEEEEcCCCCCCcccc
Q 025322 50 TTTTVAVSPSFDQDRMWLNGKEISL-GGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLAS 128 (254)
Q Consensus 50 t~t~V~~~~~~~~~~i~lnG~~~~~-~~~~~~~vl~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgS 128 (254)
+.+.|.+.++ ...|.|||.+.+. .++.....+..=...++.. .+...++.+.+ .|-|+.+
T Consensus 16 AvArv~l~~G--~G~i~VNg~~l~~y~~~~~r~~v~~Pl~l~~~~------------~~~~~Di~v~V-----~GGG~sg 76 (143)
T 3u5c_Q 16 ATAVAHVKAG--KGLIKVNGSPITLVEPEILRFKVYEPLLLVGLD------------KFSNIDIRVRV-----TGGGHVS 76 (143)
T ss_dssp CEEEEEEEEC--SCCEEETTEETTTCSSCSTHHHHHHHHHHTCST------------TSTTEEEEEEE-----ESSCHHH
T ss_pred eEEEEEEEeC--ceEEEECCCcHHHHChHHHHHHHHHHHHHHhhh------------ccCceeEEEEE-----ECCCEec
Confidence 3445555544 3579999998765 2232222222223333310 01234455555 3555544
Q ss_pred ch-hhHHHHHHHHHHHhCCCCCH
Q 025322 129 SA-AGFACLVFSLAKLMNLKENQ 150 (254)
Q Consensus 129 Sa-A~~aA~~~A~~~l~~~~l~~ 150 (254)
=| |.-.|++.||..+++.-.++
T Consensus 77 QA~AiR~aIArAL~~~~~~~vd~ 99 (143)
T 3u5c_Q 77 QVYAIRQAIAKGLVAYHQKYVDE 99 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCH
T ss_pred HHhHHHHHHHHHHHHHhhhcCCH
Confidence 33 34457778887776533343
Done!