Query 025323
Match_columns 254
No_of_seqs 114 out of 437
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 04:42:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025323.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025323hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05875 Ceramidase: Ceramidas 100.0 5.1E-66 1.1E-70 460.1 22.7 242 6-247 1-262 (262)
2 KOG2329 Alkaline ceramidase [L 100.0 1.7E-48 3.6E-53 341.7 13.3 249 5-254 8-272 (276)
3 PRK15087 hemolysin; Provisiona 98.1 0.0006 1.3E-08 59.5 18.0 180 29-221 15-211 (219)
4 PF03006 HlyIII: Haemolysin-II 97.7 0.0024 5.2E-08 54.9 15.3 188 29-217 5-220 (222)
5 PF04080 Per1: Per1-like ; In 97.5 0.014 3E-07 52.5 17.2 189 26-223 50-263 (267)
6 PF13965 SID-1_RNA_chan: dsRNA 97.4 0.01 2.3E-07 58.7 17.0 86 14-99 253-355 (570)
7 TIGR01065 hlyIII channel prote 97.4 0.023 5E-07 48.9 17.1 176 30-218 2-196 (204)
8 PF12036 DUF3522: Protein of u 97.3 0.0092 2E-07 50.9 13.9 43 33-83 11-53 (186)
9 PF15100 TMEM187: TMEM187 prot 97.1 0.089 1.9E-06 46.0 17.3 191 24-220 41-238 (242)
10 COG1272 Predicted membrane pro 96.6 0.062 1.3E-06 47.2 12.8 178 29-219 20-216 (226)
11 KOG2970 Predicted membrane pro 94.9 1.2 2.7E-05 40.5 14.3 188 27-223 101-307 (319)
12 KOG4243 Macrophage maturation- 93.8 0.015 3.2E-07 51.0 -0.5 168 31-215 87-277 (298)
13 COG5237 PER1 Predicted membran 92.7 3.8 8.2E-05 36.7 12.7 185 27-221 98-305 (319)
14 PF08255 Leader_Trp: Trp-opero 76.5 0.27 5.8E-06 24.1 -1.7 9 201-209 5-13 (14)
15 PF09726 Macoilin: Transmembra 48.1 3.3E+02 0.0072 28.1 12.8 62 168-248 97-166 (697)
16 PF03203 MerC: MerC mercury re 38.0 1.9E+02 0.004 22.3 11.1 17 88-104 1-17 (116)
17 COG4539 Predicted membrane pro 36.0 70 0.0015 26.7 4.4 62 75-138 12-75 (180)
18 PLN02806 complex I subunit 33.5 1.8E+02 0.004 21.3 5.8 37 187-225 16-53 (81)
19 TIGR02327 int_mem_ywzB conserv 21.4 2.9E+02 0.0062 19.6 4.9 16 33-48 3-18 (68)
20 PF14325 DUF4383: Domain of un 21.3 1.9E+02 0.0041 22.9 4.5 44 31-74 45-92 (125)
21 PF00599 Flu_M2: Influenza Mat 20.9 1.4E+02 0.0031 22.2 3.4 25 167-191 24-48 (97)
No 1
>PF05875 Ceramidase: Ceramidase; InterPro: IPR008901 This entry consists of several ceramidases. Ceramidases are enzymes involved in regulating cellular levels of ceramides, sphingoid bases, and their phosphates.; GO: 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0006672 ceramide metabolic process, 0016021 integral to membrane
Probab=100.00 E-value=5.1e-66 Score=460.12 Aligned_cols=242 Identities=39% Similarity=0.677 Sum_probs=209.4
Q ss_pred CCccccCCCc-chhhhcccccccccccchhhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHhHhHHHhhcccccc
Q 025323 6 SSFWGPVTST-DWCEKNYVYSSYIAEFLNTLSNVPCILLALFGLINALRQRFEKRFSVLHISNMILAIGSMLYHATLQHM 84 (254)
Q Consensus 6 ~g~Wg~~tS~-~wCE~nY~~s~~iaEf~NtlSNl~F~~~a~~gl~~~~~~~~~~~~~~~~~~l~~VGiGS~~FH~tl~~~ 84 (254)
||||||+||+ |||||||++|+|||||+||+||++|+++|++|+++.+|++.+.++.+.++++++||+||++||+|++++
T Consensus 1 ~g~wg~~ts~~dwCE~nY~~s~yiAEf~NtlSNl~fi~~al~gl~~~~~~~~~~~~~l~~~~l~~VGiGS~~FHaTl~~~ 80 (262)
T PF05875_consen 1 DGYWGPPTSTIDWCEENYVVSPYIAEFWNTLSNLAFIVAALYGLYLARRRGLERRFALLYLGLALVGIGSFLFHATLSYW 80 (262)
T ss_pred CCCCCCCCcccccchhccccCcccchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHhHHHHHhChhhh
Confidence 6999999999 999999999999999999999999999999999988888888899899999999999999999999999
Q ss_pred cccccchhHHHHHHHHHHHHHcCCc---cchhhhhHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhhhh-
Q 025323 85 QQQGDETPMVWEMLLYIYILYSPDW---HYKSTMPTFLFLYGAAFAVAHALFRFGIGFKVHYAVLCLLCIPRMYKYYIH- 160 (254)
Q Consensus 85 ~ql~Delpm~~~~~~~~~~~~~~~~---~~~~~~~~~l~l~~~~~~v~~~~~~~~~~~~~~y~~l~~~~i~~~~~~~~~- 160 (254)
+|++||+||+++++.+++.++.++. ..+...+..+..+.++.++.+...+++..+++.|+.++..++.+......+
T Consensus 81 ~ql~DelPMl~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~t~~~~~~~~p~~~~~~f~~~~~~~~~~~~~~~~~~ 160 (262)
T PF05875_consen 81 TQLLDELPMLWATLLFLYIVLTRRYSSPRYRLALPLLLFIYAVVVTVLYFVLDNPVFHQIAFASLVLLVILRSIYLIRRR 160 (262)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcccccCchhhHHHHHHHHHHHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998887655 233344566666666777777777888899999998777766665544443
Q ss_pred ----cCChhHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhcc--------ccCcccchHHHHHHHhHHHHHHHHHHHHHHh
Q 025323 161 ----TTDVPAKRLAKLYLATITVGSLCWLCDRLFCEKISLW--------YFNPQGHALWHTFMGFNSYFANTFLMFCRAQ 228 (254)
Q Consensus 161 ----~~~~~~~~~~~~~~~~f~la~~~w~~D~~~C~~l~~~--------~~~~~~H~~WHil~al~~y~~~~~~~~~~~~ 228 (254)
.++++.+|+.+.++++|++|+++|++|+.+|+.++.+ ++++|+|+||||+||+|+|+.+++.+|+|..
T Consensus 161 ~~~~~~~~~~~~l~~~~~~~f~~a~~~W~iD~~~C~~~~~~~~~~g~p~~~~le~H~~WHilt~ig~Y~~~~~~~~~~~~ 240 (262)
T PF05875_consen 161 VRDACRRRRARRLLLFGLALFLVAFFFWNIDRIFCSSLRAIRFPYGLPLGFLLELHAWWHILTGIGAYLLIVFVAYLRAL 240 (262)
T ss_pred cCchhhchHHHHHHHHHHHHHHHHHHHHHhHHHHHccccccccccCCcchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788899999999999999999999999999974 3567999999999999999999999999976
Q ss_pred hc--CCcceeee-eccccceEE
Q 025323 229 QR--GWNPKVVH-AMGWLPYVK 247 (254)
Q Consensus 229 ~~--~~~~~~~~-~~g~~p~v~ 247 (254)
++ +++++++| +.+.+|||+
T Consensus 241 ~~~~~~~~~~~~~~~~~~P~v~ 262 (262)
T PF05875_consen 241 YEGPEPKPKLKWPPWGGLPYVK 262 (262)
T ss_pred HhCCCCceEEEEecCCCCceeC
Confidence 65 55677887 467779985
No 2
>KOG2329 consensus Alkaline ceramidase [Lipid transport and metabolism]
Probab=100.00 E-value=1.7e-48 Score=341.68 Aligned_cols=249 Identities=35% Similarity=0.466 Sum_probs=195.7
Q ss_pred CCCccccCCCc-chhhhcccccccccccchhhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHhHhHHHhhccccc
Q 025323 5 LSSFWGPVTST-DWCEKNYVYSSYIAEFLNTLSNVPCILLALFGLINALRQRFEKRFSVLHISNMILAIGSMLYHATLQH 83 (254)
Q Consensus 5 ~~g~Wg~~tS~-~wCE~nY~~s~~iaEf~NtlSNl~F~~~a~~gl~~~~~~~~~~~~~~~~~~l~~VGiGS~~FH~tl~~ 83 (254)
.+|+||++||+ ||||+||+.|+|||||.||.||++|++.+.+++.+..|++.++|+.+..++++.||+||++|||||++
T Consensus 8 ~~g~W~~~tS~~dWCE~NY~~s~yIAEf~NT~sN~~fil~~~~~l~~~y~~~~e~~~~l~~v~~~ivgl~S~~fH~TL~~ 87 (276)
T KOG2329|consen 8 FSGLWGETTSTVDWCEENYAVSPYIAEFANTESNSPFILLAFIGLHCAYRQKLEKRAYLICVLFTIVGLGSMYFHMTLVY 87 (276)
T ss_pred CcccccCcCchhhhhhhchhhhHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 48999999999 99999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred ccccccchhHHHHHHHHHHHHHcCCccch----hhhhHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhhh
Q 025323 84 MQQQGDETPMVWEMLLYIYILYSPDWHYK----STMPTFLFLYGAAFAVAHALFRFGIGFKVHYAVLCLLCIPRMYKYYI 159 (254)
Q Consensus 84 ~~ql~Delpm~~~~~~~~~~~~~~~~~~~----~~~~~~l~l~~~~~~v~~~~~~~~~~~~~~y~~l~~~~i~~~~~~~~ 159 (254)
.+|++||+||+|.+..+....+.|+...+ +.......+..+++++.+.....+..++++|.++...+.+..+....
T Consensus 88 ~~QllDElamiw~i~~~~~~cy~p~~~~~~~~~~~~tF~~~~~~~avt~~~l~~~~p~~n~v~~~~~s~~v~v~~~~~~~ 167 (276)
T KOG2329|consen 88 KGQLLDELAMIWEIPLVSLLCYFPKFLVKETFSKRLTFILVLLILAVTIVGLSFLEPIVNAVALGFFSLPVAVVSMYEYY 167 (276)
T ss_pred hheehhhhhHHHHHHHHHHhhcchhhhccccccchhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhhhe
Confidence 99999999999933332222233332211 22222333444555566666666778888987665555554433333
Q ss_pred hcCChhHHHHHH-HHHHHHHHHHHHHhhhHHhhhhhhcccc--------CcccchHHHHHHHhHHHHHHHHHHHHHHhhc
Q 025323 160 HTTDVPAKRLAK-LYLATITVGSLCWLCDRLFCEKISLWYF--------NPQGHALWHTFMGFNSYFANTFLMFCRAQQR 230 (254)
Q Consensus 160 ~~~~~~~~~~~~-~~~~~f~la~~~w~~D~~~C~~l~~~~~--------~~~~H~~WHil~al~~y~~~~~~~~~~~~~~ 230 (254)
+..++ .+|... ...+.+++|+.+|..|+.+|+++..+++ .+++|+|||++++++.|....+..++|..+.
T Consensus 168 ~~~~~-~~r~l~~~~~i~~~v~~~~w~~D~~~c~f~~~~~~~l~~~~gi~l~~~a~Whv~s~~~~y~~~~~~~~~~~~~~ 246 (276)
T KOG2329|consen 168 IHVND-AKRNLGATGVILWLVGFIFWFLDRLLCSFWLRLRRYLALPLGILLELHAWWHVLTSIGSYRTITFLLYDRVLYL 246 (276)
T ss_pred eeccH-hHhccCceeeeehhhhcchhhhhHHHHHHHHHhhhhhccHHHHHHHHHHHHhheecCChhHHHHHHHHhHHhcc
Confidence 22222 344332 2577888999999999999999998653 2467999999999999999999999999999
Q ss_pred CCcceeee--eccccceEEecCCCCC
Q 025323 231 GWNPKVVH--AMGWLPYVKIDKPKVQ 254 (254)
Q Consensus 231 ~~~~~~~~--~~g~~p~v~~~~~~~~ 254 (254)
+.+++.++ +.|.+|++..++.|++
T Consensus 247 ~~~~~~~f~w~~g~~p~~l~~~~~~~ 272 (276)
T KOG2329|consen 247 PGEPKVKFYWPWGSLPERLHEKLKTG 272 (276)
T ss_pred CCCCCeEEEeecCCcceeeeccccCc
Confidence 88887775 4599999999988875
No 3
>PRK15087 hemolysin; Provisional
Probab=98.06 E-value=0.0006 Score=59.53 Aligned_cols=180 Identities=21% Similarity=0.270 Sum_probs=95.8
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHhh----hcch-h---HHHHHHHHHHHhHhHHHhhcccc----cccccccchhHHHH
Q 025323 29 AEFLNTLSNVPCILLALFGLINALRQ----RFEK-R---FSVLHISNMILAIGSMLYHATLQ----HMQQQGDETPMVWE 96 (254)
Q Consensus 29 aEf~NtlSNl~F~~~a~~gl~~~~~~----~~~~-~---~~~~~~~l~~VGiGS~~FH~tl~----~~~ql~Delpm~~~ 96 (254)
-|..|..|.+.=+++++.|...+..+ +.+. + ..+...++..-=..|+.||+..+ +..+-+|-..|...
T Consensus 15 eE~~N~~tH~ig~~~a~~~~~~l~~~~~~~~~~~~~~~~~~vy~~s~~~l~~~StlYH~~~~~~~~~~~~rlDh~~I~ll 94 (219)
T PRK15087 15 EEIANSISHGIGLVFGIVGLVLLLVQAVDANADATAITSYSLYGGSMILLFLASTLYHAIPHQRAKRWLKKFDHCAIYLL 94 (219)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHccHHHHHHH
Confidence 68899999997776677665433221 1111 1 11223557777778999998873 24477999998876
Q ss_pred HHHHH-H-HHHcCCccchhhhhHHHHHHHHHHHHhhh-hh--hcchhHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHH
Q 025323 97 MLLYI-Y-ILYSPDWHYKSTMPTFLFLYGAAFAVAHA-LF--RFGIGFKVHYAVLCLLCIPRMYKYYIHTTDVPAKRLAK 171 (254)
Q Consensus 97 ~~~~~-~-~~~~~~~~~~~~~~~~l~l~~~~~~v~~~-~~--~~~~~~~~~y~~l~~~~i~~~~~~~~~~~~~~~~~~~~ 171 (254)
+..-. - ..+..+...+..+..... ..+.+.+..- +. ++.......|..+....+..+.... ..-++..-.+..
T Consensus 95 IaGsytP~~~~~~~~~~~~~l~~~iW-~~a~~Gi~~~~~~~~~~r~l~~~~Yl~mGw~~v~~~~~l~-~~~~~~~l~~l~ 172 (219)
T PRK15087 95 IAGTYTPFLLVGLDSPLARGLMIVIW-SLALLGILFKLAFAHRFKVLSLVTYLAMGWLSLIVIYQLA-IKLAIGGVTLLA 172 (219)
T ss_pred HHHhhHHHHHHHccCHHHHHHHHHHH-HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHH
Confidence 66421 1 111111111221111111 1122222221 11 2222334557766555443221111 111222233455
Q ss_pred HHHHHHHHHHHHHhhhHHhhhhhhccccCcccchHHHHHHHhHHHHHHHH
Q 025323 172 LYLATITVGSLCWLCDRLFCEKISLWYFNPQGHALWHTFMGFNSYFANTF 221 (254)
Q Consensus 172 ~~~~~f~la~~~w~~D~~~C~~l~~~~~~~~~H~~WHil~al~~y~~~~~ 221 (254)
.+...+.+|-.+-..|+ .|+-|.+||++.-+|+......
T Consensus 173 ~GG~~Y~~G~~fY~~~~-----------~p~~H~IwH~fVl~ga~~H~~a 211 (219)
T PRK15087 173 VGGVVYSLGVIFYVCKR-----------IPYNHAIWHGFVLGGSVCHFLA 211 (219)
T ss_pred HHhHHHHhhHHHHccCC-----------CCCchhHHHHHHHHHHHHHHHH
Confidence 66778888887776663 2567999999999998655443
No 4
>PF03006 HlyIII: Haemolysin-III related; InterPro: IPR004254 Members of this family are integral membrane proteins. This family includes proteins that are hemolysin-III homologs.; GO: 0016021 integral to membrane
Probab=97.69 E-value=0.0024 Score=54.85 Aligned_cols=188 Identities=15% Similarity=0.091 Sum_probs=94.8
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHhh---hc-c--hh--HHHHHHHHHHHhHhHHHhhccc-------ccccccccchhH
Q 025323 29 AEFLNTLSNVPCILLALFGLINALRQ---RF-E--KR--FSVLHISNMILAIGSMLYHATL-------QHMQQQGDETPM 93 (254)
Q Consensus 29 aEf~NtlSNl~F~~~a~~gl~~~~~~---~~-~--~~--~~~~~~~l~~VGiGS~~FH~tl-------~~~~ql~Delpm 93 (254)
.|..|..|++.-.++.+......... +. + .+ ..+...+...--+.|+.||+.. .+..+.+|-..|
T Consensus 5 NEt~NiwtHll~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~St~yH~f~~~s~~~~~~~~~~lD~~gI 84 (222)
T PF03006_consen 5 NETVNIWTHLLGAILFLALLIFLLSLASSPSFSPWDYIPFLIYLLSAILCFLCSTLYHLFSCHSEGKVYHIFLRLDYAGI 84 (222)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhHHHhhCCCcCCcHHHHHHHHhcchhhh
Confidence 58899999998877665544332221 11 1 12 2233455677778999999932 234488899998
Q ss_pred HHHHHHH----HHHHHcCCccchhhhhHHHHHHHHHHHHhh---hh-hhc--chhHHHHHHHHHHHH-HHHHH-Hhhhhc
Q 025323 94 VWEMLLY----IYILYSPDWHYKSTMPTFLFLYGAAFAVAH---AL-FRF--GIGFKVHYAVLCLLC-IPRMY-KYYIHT 161 (254)
Q Consensus 94 ~~~~~~~----~~~~~~~~~~~~~~~~~~l~l~~~~~~v~~---~~-~~~--~~~~~~~y~~l~~~~-i~~~~-~~~~~~ 161 (254)
...+..- .+..+..+...+.....+..+ .+.+++.. .. .++ .......|..+.... +|... ......
T Consensus 85 ~l~i~gs~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~p~~~~~~~~~~ 163 (222)
T PF03006_consen 85 FLLIAGSYTPFIYYGFYCHPWLGWFYLAFIWI-LALIGIVLSLFPCFSSPRFRWLRTIFFLLLGWSGIIPIFHRIFFLGG 163 (222)
T ss_pred hHhHhhhhhhHHHhhccccchHHHHHHHHHHH-HHHHhHHhhcchhhcCCccceeeehHhHHHHHHHHhhhHHHHHHhcc
Confidence 8765543 122221122222211111111 11122211 11 111 111123455444332 33221 111111
Q ss_pred CC-hhHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhccccCcccchHHHHHHHhHHHH
Q 025323 162 TD-VPAKRLAKLYLATITVGSLCWLCDRLFCEKISLWYFNPQGHALWHTFMGFNSYF 217 (254)
Q Consensus 162 ~~-~~~~~~~~~~~~~f~la~~~w~~D~~~C~~l~~~~~~~~~H~~WHil~al~~y~ 217 (254)
.+ +..-+....+..++++|-++-..+-+.+-.-.......+.|-+||++..+|+..
T Consensus 164 ~~~~~~~~~~~~~~~~y~~G~~fy~~~~PEr~~pg~fD~~g~sHqi~Hi~v~~~~~~ 220 (222)
T PF03006_consen 164 WGSPDPLWLLILGGVLYLLGAVFYATRIPERWFPGKFDIWGHSHQIWHIFVVLAALC 220 (222)
T ss_pred ccchHHHHHHHHHHHHHHHhHHHhhhccccccCCCCcCCCCccHHHHHHHHHHHHHH
Confidence 11 111344566888999999999888544322111112356899999999998754
No 5
>PF04080 Per1: Per1-like ; InterPro: IPR007217 A member of this family has been implemented in protein processing in the endoplasmic reticulum [].
Probab=97.46 E-value=0.014 Score=52.52 Aligned_cols=189 Identities=19% Similarity=0.139 Sum_probs=95.6
Q ss_pred ccccccchhhhhHHHHHHHHHHHHHHHhhhc-c--hh--HHHHHHHHHHHhHhHHHhhcccccccccccchhHHHHHHHH
Q 025323 26 SYIAEFLNTLSNVPCILLALFGLINALRQRF-E--KR--FSVLHISNMILAIGSMLYHATLQHMQQQGDETPMVWEMLLY 100 (254)
Q Consensus 26 ~~iaEf~NtlSNl~F~~~a~~gl~~~~~~~~-~--~~--~~~~~~~l~~VGiGS~~FH~tl~~~~ql~Delpm~~~~~~~ 100 (254)
-.+-||.-++-++.=+++=..|+.+.+|+.. + .+ +....+.-+..=+-|+.||+-=..+|+-+|=..=...++.-
T Consensus 50 ~GiQEp~Sv~FSllNl~~h~~~~~~~~~~~~~~~p~~~~~~~~~~v~~naW~wStvFH~RD~~~TE~lDYf~A~a~vl~~ 129 (267)
T PF04080_consen 50 LGIQEPASVLFSLLNLLAHYRGLRKFRRQVPRNSPMYPYYIIYAIVSMNAWIWSTVFHTRDTPLTEKLDYFSAGATVLFG 129 (267)
T ss_pred hcCchHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCcCeeehHHHHHHHHHHHHHHHHHhcccHhhHhHHhhhHHHHHHH
Confidence 3578999988888777777777766554321 1 11 21222222333478999999999999999987654444433
Q ss_pred HHHHH----cCCccchhhhhHHHHHHHHHHHHhh---h-hhhcchh----HHHHHHHHHHHHHHHHHHhhhhcCChh---
Q 025323 101 IYILY----SPDWHYKSTMPTFLFLYGAAFAVAH---A-LFRFGIG----FKVHYAVLCLLCIPRMYKYYIHTTDVP--- 165 (254)
Q Consensus 101 ~~~~~----~~~~~~~~~~~~~l~l~~~~~~v~~---~-~~~~~~~----~~~~y~~l~~~~i~~~~~~~~~~~~~~--- 165 (254)
++... ...+ +...........+.+-+.| . +.+-+.+ .++..++.+.+....- ....+++.++
T Consensus 130 l~~~~~R~f~l~~--~~~~~~~~~~~~~~~~~~Hv~yL~~~~fdY~YNM~~nv~~G~~~~~lw~~~-~~~~~~~~~~~~~ 206 (267)
T PF04080_consen 130 LYAAIVRIFRLYR--RRRLRRIFTALCIAFYIAHVSYLSFVRFDYGYNMKANVAVGLLQNILWLLW-SFRNYRRYPSVKK 206 (267)
T ss_pred HHHHHHHHhcccc--cchHHHHHHHHHHHHHHHHHHHccccccccHhHHHHHHHHHHHHHHHHHHH-HHHhccccccccc
Confidence 33322 2211 1111111111111222223 2 2222222 1222223222211110 0111111111
Q ss_pred ---H-HH-HHHHHHHHHHHHHHHHhhhHHhhhhhhccccCcccchHHHHHHHhHHHHHHHHHH
Q 025323 166 ---A-KR-LAKLYLATITVGSLCWLCDRLFCEKISLWYFNPQGHALWHTFMGFNSYFANTFLM 223 (254)
Q Consensus 166 ---~-~~-~~~~~~~~f~la~~~w~~D~~~C~~l~~~~~~~~~H~~WHil~al~~y~~~~~~~ 223 (254)
. .+ ....-.++..+|..++..|-+= .. ..+--|++||+.|..-.++.-.+++
T Consensus 207 ~~~~~~~~~p~~~v~~~~lam~LEl~DFpP--~~----~~lDAHALWHl~Tip~~~~wy~Fl~ 263 (267)
T PF04080_consen 207 SYSKRWKLWPILFVVLTILAMSLELFDFPP--IF----WLLDAHALWHLATIPPTYLWYDFLI 263 (267)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhccCc--cc----ccchHHHHHHHHHhhHHHHHHHHHH
Confidence 0 11 1224567788899999999732 11 1356799999999988877655543
No 6
>PF13965 SID-1_RNA_chan: dsRNA-gated channel SID-1
Probab=97.39 E-value=0.01 Score=58.70 Aligned_cols=86 Identities=27% Similarity=0.352 Sum_probs=61.6
Q ss_pred Cc-chhhhcccccc---cccccchhhhhHHHHHHHHHHHHHHHhhh-c---------chhHH---HHHHHHHHHhHhHHH
Q 025323 14 ST-DWCEKNYVYSS---YIAEFLNTLSNVPCILLALFGLINALRQR-F---------EKRFS---VLHISNMILAIGSML 76 (254)
Q Consensus 14 S~-~wCE~nY~~s~---~iaEf~NtlSNl~F~~~a~~gl~~~~~~~-~---------~~~~~---~~~~~l~~VGiGS~~ 76 (254)
++ |-|==||..+. ...-|=|.+||+.+++.|+.-+....|++ . ++++. .+.++++.-|+-|+.
T Consensus 253 gn~D~CyyNf~Cs~p~~~~~~FN~v~Sn~gy~~lG~lfliiv~~r~~~~~~~~~~gi~~~~~~~~~~g~~li~egi~sa~ 332 (570)
T PF13965_consen 253 GNQDMCYYNFLCSHPLGGFSAFNNVFSNIGYVLLGLLFLIIVFRRKIFHRQPTSYGIPQHYGLFYAMGLALIMEGILSAC 332 (570)
T ss_pred CCCceeeeehhhhcccccccchhhhHhhHHHHHHHHHHHHHHHHhhhhccccccCCCCccchhHHHHHHHHHHHHHHHHH
Confidence 56 99999987664 44445579999999999987554333221 1 12233 334568889999999
Q ss_pred hhcccccccccccchhHHHHHHH
Q 025323 77 YHATLQHMQQQGDETPMVWEMLL 99 (254)
Q Consensus 77 FH~tl~~~~ql~Delpm~~~~~~ 99 (254)
||.=|++.+-..|.-=|-+....
T Consensus 333 yh~CPn~~~fqfdt~fmyvi~~L 355 (570)
T PF13965_consen 333 YHICPNRSNFQFDTSFMYVIAGL 355 (570)
T ss_pred hhcCcCchhhHHHHHHHHHHHHH
Confidence 99999999977998888764443
No 7
>TIGR01065 hlyIII channel protein, hemolysin III family. This family includes proteins from pathogenic and non-pathogenic bacteria, Homo sapiens and Drosophila. In Bacillus cereus, a pathogen, it has been show to function as a channel-forming cytolysin. The human protein is expressed preferentially in mature macrophages, consistent with a role cytolytic role.
Probab=97.37 E-value=0.023 Score=48.92 Aligned_cols=176 Identities=18% Similarity=0.128 Sum_probs=88.1
Q ss_pred ccchhhhhHHHHHHHHHHHHHHH-h--hhcc--hhHH--HHHHHHHHHhHhHHHhhccccc-----ccccccchhHHHHH
Q 025323 30 EFLNTLSNVPCILLALFGLINAL-R--QRFE--KRFS--VLHISNMILAIGSMLYHATLQH-----MQQQGDETPMVWEM 97 (254)
Q Consensus 30 Ef~NtlSNl~F~~~a~~gl~~~~-~--~~~~--~~~~--~~~~~l~~VGiGS~~FH~tl~~-----~~ql~Delpm~~~~ 97 (254)
|..|..|.+.=++.++.+...+. + +..+ .+.. +...+...-=..|+.||+.... ..+-+|-..|...+
T Consensus 2 e~~N~~tH~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~vy~~~~~~~~~~St~yH~~~~s~~~~~~~~rlD~~gI~~lI 81 (204)
T TIGR01065 2 EIANAITHGIGAVLSIIALALLVIYSWDHGGAVAVLGFSIYGISLILLFLVSTLYHSIPKGSKAKNWLRKIDHSMIYVLI 81 (204)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcCchhHHHHHHHccHHHHHHHH
Confidence 78999999966655554433221 1 1111 1222 2234466666789999998842 34678999888766
Q ss_pred HHH----HHHHHcCCccchhhhhHHHHHHHHHHHHhhhhh-h--cchhHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHH
Q 025323 98 LLY----IYILYSPDWHYKSTMPTFLFLYGAAFAVAHALF-R--FGIGFKVHYAVLCLLCIPRMYKYYIHTTDVPAKRLA 170 (254)
Q Consensus 98 ~~~----~~~~~~~~~~~~~~~~~~l~l~~~~~~v~~~~~-~--~~~~~~~~y~~l~~~~i~~~~~~~~~~~~~~~~~~~ 170 (254)
..- ++..+.+.+ +......... .+...+..-.. + +.......|..+....+...-... +..+...-...
T Consensus 82 aGsytP~~~~~~~~~~--~~~~~~~iw~-la~~gi~~~~~~~~~~r~~r~~~y~~~G~~~v~~~~~~~-~~~~~~~~~~l 157 (204)
T TIGR01065 82 AGTYTPFLLLALPGPL--GWTVLWIIWG-LAIGGIIYKLFFHKRPRWLSLFLYLIMGWLVVLVIKPLY-HNLPGAGFSLL 157 (204)
T ss_pred HHhhHHHHHHHcCCcH--HHHHHHHHHH-HHHHHHHHHHHccCCCchhHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHH
Confidence 543 222222211 1111111111 11222222211 1 112233456655544322111111 11222223344
Q ss_pred HHHHHHHHHHHHHHhhhHHhhhhhhccccCcccchHHHHHHHhHHHHH
Q 025323 171 KLYLATITVGSLCWLCDRLFCEKISLWYFNPQGHALWHTFMGFNSYFA 218 (254)
Q Consensus 171 ~~~~~~f~la~~~w~~D~~~C~~l~~~~~~~~~H~~WHil~al~~y~~ 218 (254)
..+...+.+|-.+-..|.+.- +.+ |.+||++.-+|+..-
T Consensus 158 ~~gg~~Y~~G~~fY~~~~p~~-------~~~--H~iwH~fV~~g~~~h 196 (204)
T TIGR01065 158 AAGGLLYTVGAIFYALKWPIP-------FTY--HAIWHLFVLGASACH 196 (204)
T ss_pred HHHhHHHHcchHheeecCCCC-------CCc--ChHHHHHHHHHHHHH
Confidence 566778888888877764320 112 999999999987544
No 8
>PF12036 DUF3522: Protein of unknown function (DUF3522); InterPro: IPR021910 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 220 to 787 amino acids in length.
Probab=97.33 E-value=0.0092 Score=50.86 Aligned_cols=43 Identities=23% Similarity=0.243 Sum_probs=25.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHhHhHHHhhccccc
Q 025323 33 NTLSNVPCILLALFGLINALRQRFEKRFSVLHISNMILAIGSMLYHATLQH 83 (254)
Q Consensus 33 NtlSNl~F~~~a~~gl~~~~~~~~~~~~~~~~~~l~~VGiGS~~FH~tl~~ 83 (254)
=|+||++|+-...... ||+.... ...-...++.|+.||+.-..
T Consensus 11 l~lSnl~~lP~i~~a~----rr~~~~E----a~v~~~tm~~S~~YHacd~~ 53 (186)
T PF12036_consen 11 LTLSNLAFLPTIYVAV----RRRYHFE----AFVYTFTMFFSTFYHACDSG 53 (186)
T ss_pred HHHHHHHHHHHHHHHH----HHhhHHH----HHHHHHHHHHHHhcccccCC
Confidence 4899999985544322 2222111 12234568899999998633
No 9
>PF15100 TMEM187: TMEM187 protein family
Probab=97.07 E-value=0.089 Score=45.96 Aligned_cols=191 Identities=18% Similarity=0.121 Sum_probs=93.9
Q ss_pred ccccccccchhhhhHHHHHHHHHHHHHHHhhhc---chhHH--HHHHHHHHHhHhHHHhhcccccccccccchhHHHHHH
Q 025323 24 YSSYIAEFLNTLSNVPCILLALFGLINALRQRF---EKRFS--VLHISNMILAIGSMLYHATLQHMQQQGDETPMVWEML 98 (254)
Q Consensus 24 ~s~~iaEf~NtlSNl~F~~~a~~gl~~~~~~~~---~~~~~--~~~~~l~~VGiGS~~FH~tl~~~~ql~Delpm~~~~~ 98 (254)
.+.+.+-|.|++.|++|++.|+|.+.+..+.+. +.++. ++...-..-|.=-+.+=+|.++..-.+|+-..+-.+.
T Consensus 41 LP~~LaMPfNslvNv~Y~llG~yWL~~~~~~~~~~~~a~Y~k~vfa~mAl~YgpVQwlri~Tq~r~~AvLDQW~tLPifA 120 (242)
T PF15100_consen 41 LPAFLAMPFNSLVNVAYVLLGWYWLRRAGKAPGTPARARYLKDVFAWMALHYGPVQWLRIATQTRRAAVLDQWFTLPIFA 120 (242)
T ss_pred chHHhhccHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHhHHHHHHHHHhhccHHHHHHHHhhHHHH
Confidence 567999999999999999999997643222111 22322 2222233445556677789999888888755442222
Q ss_pred -HHHHHHHcCCccchhhhhHHHHHHHH-HHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHH
Q 025323 99 -LYIYILYSPDWHYKSTMPTFLFLYGA-AFAVAHALFRFGIGFKVHYAVLCLLCIPRMYKYYIHTTDVPAKRLAKLYLAT 176 (254)
Q Consensus 99 -~~~~~~~~~~~~~~~~~~~~l~l~~~-~~~v~~~~~~~~~~~~~~y~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (254)
...|..+-+| ..+. ..++.+... ..+-...... +.|+-++-+.-...++....+...+..+..-.+.+..|+..
T Consensus 121 W~v~Wc~~l~~-GW~p--~~~l~ie~~Sl~SY~laLlH-p~GFEvaLG~hI~~av~~a~~~~~r~g~~~s~~yl~La~lS 196 (242)
T PF15100_consen 121 WVVAWCLYLDR-GWKP--WRFLAIECLSLLSYGLALLH-PRGFEVALGIHILAAVGQALRTQFRYGDASSLTYLVLAVLS 196 (242)
T ss_pred HHHHHHHHHHc-CccH--HHHHHHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHHHHHHHhhhCCcccHHHHHHHHHH
Confidence 2234443333 1111 111111111 1111111222 22333332222222222222223332333333444455554
Q ss_pred HHHHHHHHhhhHHhhhhhhccccCcccchHHHHHHHhHHHHHHH
Q 025323 177 ITVGSLCWLCDRLFCEKISLWYFNPQGHALWHTFMGFNSYFANT 220 (254)
Q Consensus 177 f~la~~~w~~D~~~C~~l~~~~~~~~~H~~WHil~al~~y~~~~ 220 (254)
.+.=.++-..|.++=.+ +-+. -+.||+|=-++..+-..+...
T Consensus 197 clgFvvLkl~D~~La~~-~lFq-~lTGhFWSKvcdvlqfH~af~ 238 (242)
T PF15100_consen 197 CLGFVVLKLLDHELARW-RLFQ-RLTGHFWSKVCDVLQFHFAFL 238 (242)
T ss_pred HHHHHHHHHhHHHHHhh-HHHH-HhcccHHHHHHHHHHHHHHHh
Confidence 44444556778766332 2111 267999988888776555443
No 10
>COG1272 Predicted membrane protein, hemolysin III homolog [General function prediction only]
Probab=96.58 E-value=0.062 Score=47.23 Aligned_cols=178 Identities=19% Similarity=0.160 Sum_probs=95.5
Q ss_pred cccchhhhhHHHHHHHHHHHHHHH----hhhcch-h--HHHHHHHHHHHhHhHHHhhcccc-----cccccccchhHHHH
Q 025323 29 AEFLNTLSNVPCILLALFGLINAL----RQRFEK-R--FSVLHISNMILAIGSMLYHATLQ-----HMQQQGDETPMVWE 96 (254)
Q Consensus 29 aEf~NtlSNl~F~~~a~~gl~~~~----~~~~~~-~--~~~~~~~l~~VGiGS~~FH~tl~-----~~~ql~Delpm~~~ 96 (254)
.|..|++|.+.=.++++.++.... .+.... . ..+...+++..=..|+.||..++ .+.|-+|-..|..+
T Consensus 20 ~e~~n~~tHlvGail~i~~l~~l~~~a~~~~~~~~~~~~~iy~~sl~~l~~~St~YH~~~~~~~~k~~~rk~DH~~I~vL 99 (226)
T COG1272 20 EEIANAITHLIGAILAIVGLVLLLVYALITGSALAVIVFSIYGLSLFLLFLVSTLYHSIPNGQKAKAILRKFDHSGIYVL 99 (226)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHhhhhhHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHccHHHHHHH
Confidence 567899999887777766654322 111111 1 22334568888889999999986 36689999998876
Q ss_pred HHHH-H---HHHHcCCccchhhhhHHHHHHHHHHHHhhh-hhh--cchhHHHHHHHHHHHHHHHHHHhhhhcCChhHHHH
Q 025323 97 MLLY-I---YILYSPDWHYKSTMPTFLFLYGAAFAVAHA-LFR--FGIGFKVHYAVLCLLCIPRMYKYYIHTTDVPAKRL 169 (254)
Q Consensus 97 ~~~~-~---~~~~~~~~~~~~~~~~~l~l~~~~~~v~~~-~~~--~~~~~~~~y~~l~~~~i~~~~~~~~~~~~~~~~~~ 169 (254)
+..- + +..+.+ + .++.... +....+.+.+.+- ..+ +.......|..+...+++....... .-+...-.+
T Consensus 100 IAgSyTP~~l~~l~~-~-~~~~~~~-iiW~lal~Gi~~kl~~~~~~r~ls~~~yl~mGw~~v~~~~~l~~-~l~~~~~~~ 175 (226)
T COG1272 100 IAGSYTPFLLVGLYG-P-LGWILLG-LIWGLALAGILFKLFFKKRFRKLSLVLYLAMGWLGLIVIKPLIA-KLGLIGLVL 175 (226)
T ss_pred HHHhhHHHhHHHhcc-c-hHHHHHH-HHHHHHHHHHhhhhhccCcCceeeehhhHHHHHHHHHHHHHHHH-hCchHHHHH
Confidence 6642 1 111111 1 2222111 1111222333322 111 1111124566665554443222222 112222234
Q ss_pred HHHHHHHHHHHHHHHhhhHHhhhhhhccccCcccchHHHHHHHhHHHHHH
Q 025323 170 AKLYLATITVGSLCWLCDRLFCEKISLWYFNPQGHALWHTFMGFNSYFAN 219 (254)
Q Consensus 170 ~~~~~~~f~la~~~w~~D~~~C~~l~~~~~~~~~H~~WHil~al~~y~~~ 219 (254)
+..+..+|.+|-.+-..|. + ..+.-|.+||++.-+|+....
T Consensus 176 l~~GGv~YsvG~ifY~~~~---~------~~~~~H~iwH~fVv~ga~~Hf 216 (226)
T COG1272 176 LALGGVLYSVGAIFYVLRI---D------RIPYSHAIWHLFVVGGAACHF 216 (226)
T ss_pred HHHHhHHheeeeEEEEEee---c------cCCchHHHHHHHHHHHHHHHH
Confidence 5566777887766655553 1 146789999999999975443
No 11
>KOG2970 consensus Predicted membrane protein [Function unknown]
Probab=94.95 E-value=1.2 Score=40.48 Aligned_cols=188 Identities=15% Similarity=0.071 Sum_probs=91.4
Q ss_pred cccccchhhhhHHHHHHHHHHHHHHH---hhhcch---hHHHHH-HHHHHHhHhHHHhhcccccccccccchhHHHHHHH
Q 025323 27 YIAEFLNTLSNVPCILLALFGLINAL---RQRFEK---RFSVLH-ISNMILAIGSMLYHATLQHMQQQGDETPMVWEMLL 99 (254)
Q Consensus 27 ~iaEf~NtlSNl~F~~~a~~gl~~~~---~~~~~~---~~~~~~-~~l~~VGiGS~~FH~tl~~~~ql~Delpm~~~~~~ 99 (254)
.|-||.-++-+..=++.=..|+..-+ |+..+. |....+ ..-+..=+-|..||+.-...++-+|=-.=...++.
T Consensus 101 GiQEp~SviFS~lNl~~h~~g~~~~r~~~~~~~~~r~~~l~~I~a~i~mnawiwSsvFH~rD~~lTEklDYf~A~~~vlf 180 (319)
T KOG2970|consen 101 GIQEPFSVIFSFLNLITHYKGLVKFRRPKKPNRPTRYERLWLIYAYIGMNAWIWSSVFHIRDVPLTEKLDYFSAYLTVLF 180 (319)
T ss_pred hccchHHHHHHHHHHHHHHHHHhheecccCCCCcchhccchhhHHHHHHHHHHHHHhhhhcCCchHhhhhHHHHHHHHHH
Confidence 57799876544444444444443222 111222 222222 22344557899999999999999997764443333
Q ss_pred HHHHHHc--CC-ccchhhhhHHHHHHHHHHHHhh---h-hhhcchh----HHHHHHHHHHHHHHHHHHhhhhcCChhHHH
Q 025323 100 YIYILYS--PD-WHYKSTMPTFLFLYGAAFAVAH---A-LFRFGIG----FKVHYAVLCLLCIPRMYKYYIHTTDVPAKR 168 (254)
Q Consensus 100 ~~~~~~~--~~-~~~~~~~~~~l~l~~~~~~v~~---~-~~~~~~~----~~~~y~~l~~~~i~~~~~~~~~~~~~~~~~ 168 (254)
-+|..+. .+ ...+.....+ .+.++.+-+.| . +.+-+.+ ..+..++++.+.... ..+++++-+..+|
T Consensus 181 ~ly~a~ir~~~i~~~~~~~~~i-ta~fla~ya~Hi~yls~~~fdYgyNm~~~v~~g~iq~vlw~~--~~~~~~~~~s~~~ 257 (319)
T KOG2970|consen 181 GLYVALIRMLSIQSLPALRGMI-TAIFLAFYANHILYLSFYNFDYGYNMIVCVAIGVIQLVLWLV--WSFKKRNLPSFWR 257 (319)
T ss_pred HHHHHHHHHHHHhcchhhhHHH-HHHHHHHHHHHHHHHhheecccccceeeehhhHHHHHHHHHH--HHHHhhcCcchhh
Confidence 3343221 01 1111111111 11111111122 1 2221111 122333443333221 1233333333334
Q ss_pred -HHHHHHHHHHHHHHHHhhhHHhhhhhhccccCcccchHHHHHHHhHHHHHHHHHH
Q 025323 169 -LAKLYLATITVGSLCWLCDRLFCEKISLWYFNPQGHALWHTFMGFNSYFANTFLM 223 (254)
Q Consensus 169 -~~~~~~~~f~la~~~w~~D~~~C~~l~~~~~~~~~H~~WHil~al~~y~~~~~~~ 223 (254)
....-+..+.+|..+++.|-+=... .+--|++||+.|---.++.--++.
T Consensus 258 i~~~~i~~~~~LA~sLEi~DFpPy~~------~iDAHALWHlaTIplt~~~~~Fv~ 307 (319)
T KOG2970|consen 258 IWPILIVIFFFLAMSLEIFDFPPYAW------LIDAHALWHLATIPLTILWYDFVS 307 (319)
T ss_pred hhHHHHHHHHHHHHHHHhhcCCchhh------hcchHHHHHhhcCccHHHHHHHhh
Confidence 2334456678999999999743322 356799999999887766655554
No 12
>KOG4243 consensus Macrophage maturation-associated protein [Defense mechanisms]
Probab=93.78 E-value=0.015 Score=50.99 Aligned_cols=168 Identities=17% Similarity=0.201 Sum_probs=89.3
Q ss_pred cchhhhhHHHHHHHHHHHHHHHhhhc---chhHHHHH-HHHHHHhHhHHHhhccc------------ccccccccchhHH
Q 025323 31 FLNTLSNVPCILLALFGLINALRQRF---EKRFSVLH-ISNMILAIGSMLYHATL------------QHMQQQGDETPMV 94 (254)
Q Consensus 31 f~NtlSNl~F~~~a~~gl~~~~~~~~---~~~~~~~~-~~l~~VGiGS~~FH~tl------------~~~~ql~Delpm~ 94 (254)
-.|+.|...-++.++.|-..+.+... +.-....| .++...-.-|+.||..- .+-..+.|+.-|-
T Consensus 87 vAN~~tHai~I~PaIl~~~~l~~~s~~d~q~i~awIYG~~lc~LFt~STvfH~~~~~~~hqn~~r~l~~~lH~cDRa~IY 166 (298)
T KOG4243|consen 87 VANCYTHAIWIVPAILGSALLHRLSDDDWQKITAWIYGMGLCALFTVSTVFHIVSWKKSHQNKLRTLEHCLHMCDRAVIY 166 (298)
T ss_pred HHhhHhhHhhhhHHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhh
Confidence 36999999999999998776554222 11122233 55777888899999753 3334578887665
Q ss_pred HHHHHHHHH-HHcCCccchh---hhhHHHHHHHHHHHHhhhh-hhc--chhHHHHHHHHHHHHHHHHHHhhhhcCChhHH
Q 025323 95 WEMLLYIYI-LYSPDWHYKS---TMPTFLFLYGAAFAVAHAL-FRF--GIGFKVHYAVLCLLCIPRMYKYYIHTTDVPAK 167 (254)
Q Consensus 95 ~~~~~~~~~-~~~~~~~~~~---~~~~~l~l~~~~~~v~~~~-~~~--~~~~~~~y~~l~~~~i~~~~~~~~~~~~~~~~ 167 (254)
.++.+ -|. .+..| ..+. -+..++++ ++...+.|-+ ..+ -.--...|.++.+ .|.+... ...+..--
T Consensus 167 ~FIAa-SY~PWLtLr-~~g~~~~~m~W~IWl-mA~~Gi~Yq~~fHErYK~lEt~~Ylvmg~--gPalvv~--sm~~~~Gl 239 (298)
T KOG4243|consen 167 FFIAA-SYAPWLTLR-ELGPLASHMRWFIWL-MAAGGIIYQFLFHERYKVLETFFYLVMGF--GPALVVT--SMNNTDGL 239 (298)
T ss_pred hhhhh-cccccccHH-hhCcHHHHHHHHHHH-HHhcchhhhhhHHHHHHHHHHHHHHHHhc--CceEEEE--EeCCchhH
Confidence 55543 222 11111 0111 11223332 2233333321 111 0111234443322 2221111 11222212
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhhccccCcccchHHHHHHHhHH
Q 025323 168 RLAKLYLATITVGSLCWLCDRLFCEKISLWYFNPQGHALWHTFMGFNS 215 (254)
Q Consensus 168 ~~~~~~~~~f~la~~~w~~D~~~C~~l~~~~~~~~~H~~WHil~al~~ 215 (254)
..+..+...+.+|.+|--.|-.. |--|+.||++.++|+
T Consensus 240 ~~l~~GG~~Y~lGvvFFK~DG~i----------pfAHAIWHLFV~l~A 277 (298)
T KOG4243|consen 240 QELATGGLFYCLGVVFFKSDGII----------PFAHAIWHLFVALAA 277 (298)
T ss_pred HHHHhCCEEEEEEEEEEecCCce----------ehHHHHHHHHHHHHc
Confidence 33456777888888888888643 567999999999997
No 13
>COG5237 PER1 Predicted membrane protein [Function unknown]
Probab=92.68 E-value=3.8 Score=36.67 Aligned_cols=185 Identities=18% Similarity=0.200 Sum_probs=89.1
Q ss_pred cccccchhhhhHHHHHHHHHHHHHHHh----hhcchh-HHHHH-HHHHHHhHhHHHhhcccccccccccchhHHHHHHHH
Q 025323 27 YIAEFLNTLSNVPCILLALFGLINALR----QRFEKR-FSVLH-ISNMILAIGSMLYHATLQHMQQQGDETPMVWEMLLY 100 (254)
Q Consensus 27 ~iaEf~NtlSNl~F~~~a~~gl~~~~~----~~~~~~-~~~~~-~~l~~VGiGS~~FH~tl~~~~ql~Delpm~~~~~~~ 100 (254)
.+-||+.++-+..=++.-..|..+-+| +....| ..+.+ ..=+.-=+-|..||.--+--++=+|-..--..++.=
T Consensus 98 G~qEfFS~~FS~~Nfi~hy~gfh~m~r~i~~e~~~~R~~~l~wv~igmlAwi~SsvFHird~~iTeklDYF~AgltVLfG 177 (319)
T COG5237 98 GMQEFFSALFSFMNFITHYIGFHRMLRKILRETRLGRLYYLQWVYIGMLAWISSSVFHIRDNTITEKLDYFLAGLTVLFG 177 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccceEEeeHHHHHHHHHHHHhheeeeccchhhhHHHHHhhHHHHHH
Confidence 456888876655555444444432222 111222 22222 112334468999999888888888865544333322
Q ss_pred HHHHH-------cCCccchhhhhHHH-HHHHHHHHHhhh----hhhc----chhHHHHHHHHHHHHHHHHHHhhhhcC-C
Q 025323 101 IYILY-------SPDWHYKSTMPTFL-FLYGAAFAVAHA----LFRF----GIGFKVHYAVLCLLCIPRMYKYYIHTT-D 163 (254)
Q Consensus 101 ~~~~~-------~~~~~~~~~~~~~l-~l~~~~~~v~~~----~~~~----~~~~~~~y~~l~~~~i~~~~~~~~~~~-~ 163 (254)
+|..+ .+. -.+.....+ +++.+.++ .|. ..+- ....+.+.++.+.+..... ....+++ .
T Consensus 178 fy~~lvrm~~~~~~p--~~K~~~~~~~aifia~fa-~Hi~rls~i~fdY~YNm~~n~aigv~q~iL~~~~-s~~ny~~~g 253 (319)
T COG5237 178 FYMALVRMILIVSPP--IEKATRGPLQAIFIAFFA-YHIHRLSNIEFDYVYNMISNCAIGVTQTILSHLV-SFLNYRKLG 253 (319)
T ss_pred HHHHHHHHHHhhcCc--hHHHHHhHHHHHHHHHHH-HHHHHHhhccceeeehhhhcchHHHHHHHHHHHH-HHhhhHhhh
Confidence 33322 111 112111111 11111111 121 1111 1112233333333322111 1111111 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhccccCcccchHHHHHHHhHHHHHHHH
Q 025323 164 VPAKRLAKLYLATITVGSLCWLCDRLFCEKISLWYFNPQGHALWHTFMGFNSYFANTF 221 (254)
Q Consensus 164 ~~~~~~~~~~~~~f~la~~~w~~D~~~C~~l~~~~~~~~~H~~WHil~al~~y~~~~~ 221 (254)
...+|....-+..+.+|-.+++.|-.-.+.+ +.-|++||+.|.....++..+
T Consensus 254 ~~~kr~p~~~v~~~~lA~slElfDf~pya~l------IDaHAlWHL~t~~~t~~ly~F 305 (319)
T COG5237 254 HTFKRIPLFFVFFFFLAGSLELFDFPPYAYL------IDAHALWHLITCISTPFLYLF 305 (319)
T ss_pred hhhhhhhHHHHHHHHHhhhhhhhccCcHHHH------hhHHHHhHhhhccchHHHHHh
Confidence 1125555566777888889999998655443 577999999999988666433
No 14
>PF08255 Leader_Trp: Trp-operon Leader Peptide; InterPro: IPR013205 The tryptophan operon regulatory region of Citrobacter freundii (leader transcript) encodes a 14-residue peptide containing characteristic tandem tryptophan residues. It is about 10 nucleotides shorter than those of Escherichia coli and Salmonella typhimurium [].
Probab=76.49 E-value=0.27 Score=24.12 Aligned_cols=9 Identities=33% Similarity=0.560 Sum_probs=7.6
Q ss_pred cccchHHHH
Q 025323 201 PQGHALWHT 209 (254)
Q Consensus 201 ~~~H~~WHi 209 (254)
+.+|+|||+
T Consensus 5 ~~L~~WWrt 13 (14)
T PF08255_consen 5 FSLHGWWRT 13 (14)
T ss_pred EEEeeEEEc
Confidence 678999996
No 15
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=48.09 E-value=3.3e+02 Score=28.07 Aligned_cols=62 Identities=18% Similarity=0.297 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhhccccCcccchHHHHHHHhHHHHHHHHHHH-HHHhhcCCcceee-------ee
Q 025323 168 RLAKLYLATITVGSLCWLCDRLFCEKISLWYFNPQGHALWHTFMGFNSYFANTFLMF-CRAQQRGWNPKVV-------HA 239 (254)
Q Consensus 168 ~~~~~~~~~f~la~~~w~~D~~~C~~l~~~~~~~~~H~~WHil~al~~y~~~~~~~~-~~~~~~~~~~~~~-------~~ 239 (254)
+++.+++-.|+-=-.+|..|+-+|-. -+.+++++++++. .|..+.+-.|.+. +.
T Consensus 97 ~~~~~~~~~~v~~~~~~~~~~~~~~~------------------~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ah~ 158 (697)
T PF09726_consen 97 HWLFFAASTYVWVQYVWHTDRGICLP------------------TVSLWILFVYVEASVRLKDLKSMPHLDLCRPFAAHC 158 (697)
T ss_pred HHHHHHHhHHHHHHHhhhccCCccHH------------------HHHHHHHHHHHHHHHhhcccCCCcchhhcccHHHhh
Confidence 34556666677777789999988822 2334556666654 3554444433331 45
Q ss_pred ccccceEEe
Q 025323 240 MGWLPYVKI 248 (254)
Q Consensus 240 ~g~~p~v~~ 248 (254)
+|. |.|-+
T Consensus 159 igy-pvv~~ 166 (697)
T PF09726_consen 159 IGY-PVVTL 166 (697)
T ss_pred cCC-ceeEe
Confidence 777 76654
No 16
>PF03203 MerC: MerC mercury resistance protein
Probab=37.97 E-value=1.9e+02 Score=22.30 Aligned_cols=17 Identities=24% Similarity=0.030 Sum_probs=12.8
Q ss_pred ccchhHHHHHHHHHHHH
Q 025323 88 GDETPMVWEMLLYIYIL 104 (254)
Q Consensus 88 ~Delpm~~~~~~~~~~~ 104 (254)
+|.+.|.......+...
T Consensus 1 ~D~~gi~~S~LC~iHCl 17 (116)
T PF03203_consen 1 LDRLGIGASLLCAIHCL 17 (116)
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 58888888777766663
No 17
>COG4539 Predicted membrane protein [Function unknown]
Probab=35.96 E-value=70 Score=26.72 Aligned_cols=62 Identities=13% Similarity=0.088 Sum_probs=36.0
Q ss_pred HHhhcccccccccccchhHHHHHHHHHHHHHcCCccch--hhhhHHHHHHHHHHHHhhhhhhcchh
Q 025323 75 MLYHATLQHMQQQGDETPMVWEMLLYIYILYSPDWHYK--STMPTFLFLYGAAFAVAHALFRFGIG 138 (254)
Q Consensus 75 ~~FH~tl~~~~ql~Delpm~~~~~~~~~~~~~~~~~~~--~~~~~~l~l~~~~~~v~~~~~~~~~~ 138 (254)
+.||-.+.+-.--.=-+||+....+.+.. ++..... +.......+..+.++++|...+++.|
T Consensus 12 aaYH~nprNI~iH~i~IP~ills~avllh--r~vi~l~~~~l~is~a~ll~va~~iFYl~Ldl~~G 75 (180)
T COG4539 12 AAYHHNPRNILIHFIGIPTILLSGAVLLH--RPVIGLSNSKLQISPALLLSVAFSIFYLRLDLPFG 75 (180)
T ss_pred HHHhcCCcceeeeeecchHHHHHHHHHhh--cceeeecCCcceecHHHHHHHHHHHHheeeccchh
Confidence 57899988877777789999877764332 2221111 11111122334577888887776544
No 18
>PLN02806 complex I subunit
Probab=33.51 E-value=1.8e+02 Score=21.31 Aligned_cols=37 Identities=22% Similarity=0.383 Sum_probs=27.9
Q ss_pred hHHhhhhhhccccCcccchHHHHH-HHhHHHHHHHHHHHH
Q 025323 187 DRLFCEKISLWYFNPQGHALWHTF-MGFNSYFANTFLMFC 225 (254)
Q Consensus 187 D~~~C~~l~~~~~~~~~H~~WHil-~al~~y~~~~~~~~~ 225 (254)
-..+|+.+|.+| +.-|=|-|++ +|+|+++........
T Consensus 16 ~qlysNalRKLP--~mrhPWeHV~~~G~GA~~~n~l~~we 53 (81)
T PLN02806 16 TQLYSNALRKLP--LMRHPWEHVLAMGLGAVFANQLVKWE 53 (81)
T ss_pred HHHHHhHHhhCc--cccCcHHHHHHHhhHHHHHHHHHHHH
Confidence 356788888743 4469999986 688899888777653
No 19
>TIGR02327 int_mem_ywzB conserved hypothetical integral membrane protein. Members of this protein family are small, typically about 80 residues in length, and are highly hydrophobic. The gene is found so far only in a subset of the Firmicutes in association with genes of the ATP synthase F1 complex or NADH-quinone oxidoreductase. This family includes ywzB from Bacillus subtilis; Pfam model pfam06612 describes the same family as Protein of unknown function DUF1146.
Probab=21.38 E-value=2.9e+02 Score=19.62 Aligned_cols=16 Identities=19% Similarity=0.306 Sum_probs=13.0
Q ss_pred hhhhhHHHHHHHHHHH
Q 025323 33 NTLSNVPCILLALFGL 48 (254)
Q Consensus 33 NtlSNl~F~~~a~~gl 48 (254)
+-+|++.|+..+.+.+
T Consensus 3 ~ii~hl~fI~lsf~al 18 (68)
T TIGR02327 3 AIVSHLLFIGISYWAL 18 (68)
T ss_pred ehHHHHHHHHHHHHHH
Confidence 4589999999988755
No 20
>PF14325 DUF4383: Domain of unknown function (DUF4383)
Probab=21.30 E-value=1.9e+02 Score=22.94 Aligned_cols=44 Identities=25% Similarity=0.315 Sum_probs=27.8
Q ss_pred cchhhhhHHHHHHHHHHHHHHHhhhcchhHH----HHHHHHHHHhHhH
Q 025323 31 FLNTLSNVPCILLALFGLINALRQRFEKRFS----VLHISNMILAIGS 74 (254)
Q Consensus 31 f~NtlSNl~F~~~a~~gl~~~~~~~~~~~~~----~~~~~l~~VGiGS 74 (254)
..|.+-|+.-++.|+.|+...++.+..+.+. +.|..+.+.|+..
T Consensus 45 ~vn~lhn~vHl~~Gv~gl~aa~~~~~Ar~~~~~~g~~y~~l~i~Gl~~ 92 (125)
T PF14325_consen 45 AVNPLHNIVHLLFGVAGLAAARSPRAARAFLRLFGVVYLALGIYGLFP 92 (125)
T ss_pred eccHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5899999999999999987555433333222 2344444444443
No 21
>PF00599 Flu_M2: Influenza Matrix protein (M2); InterPro: IPR002089 This entry contains Influenza virus matrix protein 2. It is an integral membrane protein that is expressed on the infected cell surface and incorporated into virions where it is a minor component. The protein spans the viral membrane with an extracellular amino-terminus and a cytoplasmic carboxy-terminus. The transmembrane domain of the M2 protein forms the channel pore. The M2 protein, which forms a homotetramer, has H+ ion channel which was found to be regulated by pH [ and may have a pivotal role in the biology of Influenza virus infection [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015992 proton transport, 0033644 host cell membrane, 0055036 virion membrane; PDB: 2L0J_A 2KWX_B 2KIH_A 2RLF_A 1MP6_A 2LJB_D 2LJC_A 2H95_B 1NYJ_B 3BKD_E ....
Probab=20.87 E-value=1.4e+02 Score=22.20 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHhh
Q 025323 167 KRLAKLYLATITVGSLCWLCDRLFC 191 (254)
Q Consensus 167 ~~~~~~~~~~f~la~~~w~~D~~~C 191 (254)
..+..+|-++=.+-+.+|.+||.+.
T Consensus 24 d~lv~aA~IiGILHLiLWI~DRlff 48 (97)
T PF00599_consen 24 DPLVIAANIIGILHLILWILDRLFF 48 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788889999999999663
Done!