Query 025323
Match_columns 254
No_of_seqs 114 out of 437
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 08:00:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025323.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025323hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bkd_A Transmembrane domain of 34.2 47 0.0016 18.1 3.0 22 169-190 5-26 (26)
2 2kih_A Matrix protein 2; S31N, 26.9 80 0.0028 19.1 3.5 23 168-190 8-30 (43)
3 3lbw_A M2 protein; proton chan 22.4 97 0.0033 16.4 3.2 18 172-189 5-22 (23)
4 2ljb_A M2 protein, BM2 protein 21.8 1E+02 0.0036 18.0 3.1 22 169-190 9-30 (35)
5 3p8c_F ABL interactor 2; actin 13.2 34 0.0012 27.3 -0.5 8 16-23 32-39 (159)
6 2qdr_A Uncharacterized protein 12.6 34 0.0012 29.7 -0.7 23 6-28 226-249 (303)
7 2lx0_A Membrane fusion protein 12.0 1.7E+02 0.0059 16.3 2.3 15 204-218 3-17 (32)
8 1m0d_A Endonuclease, endodeoxy 10.8 57 0.0019 25.4 0.1 12 10-21 93-105 (138)
9 3msq_A Putative ubiquinone bio 9.4 67 0.0023 26.8 0.0 14 202-215 124-137 (224)
10 3rf3_C Invasin IPAA, 70 kDa an 9.4 89 0.0031 17.1 0.5 8 32-39 17-24 (29)
No 1
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=34.15 E-value=47 Score=18.08 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHh
Q 025323 169 LAKLYLATITVGSLCWLCDRLF 190 (254)
Q Consensus 169 ~~~~~~~~f~la~~~w~~D~~~ 190 (254)
+...+-++=.+-+.+|.+||.+
T Consensus 5 lv~aa~iiGilHLiLwIldrlf 26 (26)
T 3bkd_A 5 LVVAASIMGILHLILWILDRLX 26 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-
T ss_pred chhHHHHHHHHHHHHHHHhhcC
Confidence 3445556667788899999853
No 2
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* 2l0j_A 2kwx_A
Probab=26.86 E-value=80 Score=19.14 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHh
Q 025323 168 RLAKLYLATITVGSLCWLCDRLF 190 (254)
Q Consensus 168 ~~~~~~~~~f~la~~~w~~D~~~ 190 (254)
.+...+.++=.+-+.+|.+||.+
T Consensus 8 plv~aa~iiGIlHLiLwildRlf 30 (43)
T 2kih_A 8 PLVVAANIIGILHLILWILDRLF 30 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777778889999999976
No 3
>3lbw_A M2 protein; proton channel, M2TM, HOST CEL membrane, hydrogen ION transport, ionic channel, transmembr virion, transport protein; HET: XYL; 1.65A {Influenza a virus}
Probab=22.45 E-value=97 Score=16.37 Aligned_cols=18 Identities=22% Similarity=0.375 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHhhhHH
Q 025323 172 LYLATITVGSLCWLCDRL 189 (254)
Q Consensus 172 ~~~~~f~la~~~w~~D~~ 189 (254)
.+..+-.+-+.+|.+||.
T Consensus 5 aa~iigIlHLiLwIlDrL 22 (23)
T 3lbw_A 5 AASIIAILHLILWILDRL 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHhhc
Confidence 444555677788988873
No 4
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=21.76 E-value=1e+02 Score=17.98 Aligned_cols=22 Identities=14% Similarity=0.074 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHh
Q 025323 169 LAKLYLATITVGSLCWLCDRLF 190 (254)
Q Consensus 169 ~~~~~~~~f~la~~~w~~D~~~ 190 (254)
+...+.++=.+-+.+|.+|+.+
T Consensus 9 lviaA~IigiLHlilWildrLf 30 (35)
T 2ljb_A 9 LVVAASIIGILHFIAWTIGHLN 30 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhH
Confidence 4556667777889999999976
No 5
>3p8c_F ABL interactor 2; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=13.17 E-value=34 Score=27.29 Aligned_cols=8 Identities=63% Similarity=1.639 Sum_probs=6.1
Q ss_pred chhhhccc
Q 025323 16 DWCEKNYV 23 (254)
Q Consensus 16 ~wCE~nY~ 23 (254)
||||.||.
T Consensus 32 dYCE~nY~ 39 (159)
T 3p8c_F 32 DYCENNYI 39 (159)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 78888873
No 6
>2qdr_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE EPE; 2.60A {Nostoc punctiforme}
Probab=12.62 E-value=34 Score=29.74 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=19.6
Q ss_pred CCccccCCCc-chhhhcccccccc
Q 025323 6 SSFWGPVTST-DWCEKNYVYSSYI 28 (254)
Q Consensus 6 ~g~Wg~~tS~-~wCE~nY~~s~~i 28 (254)
+|++...... |+|||.|.++++.
T Consensus 226 Pg~dt~~v~iHdy~EEvY~LeG~~ 249 (303)
T 2qdr_A 226 PHFDNKYQMIQPYNEEGYCLTGYC 249 (303)
T ss_dssp SSEECCSEEEECSCEEEEEEEEEE
T ss_pred CCCCCCCceeeccceeEEEEeeec
Confidence 6778888888 9999999988865
No 7
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=11.96 E-value=1.7e+02 Score=16.28 Aligned_cols=15 Identities=20% Similarity=0.764 Sum_probs=12.1
Q ss_pred chHHHHHHHhHHHHH
Q 025323 204 HALWHTFMGFNSYFA 218 (254)
Q Consensus 204 H~~WHil~al~~y~~ 218 (254)
|..|.+..|+.+.+-
T Consensus 3 htiweviaglvallt 17 (32)
T 2lx0_A 3 HTIWEVIAGLVALLT 17 (32)
T ss_dssp SSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH
Confidence 899999999886543
No 8
>1m0d_A Endonuclease, endodeoxyribonuclease I; holliday junction resolvase, homodimer, domain swapped, composite active site, hydrolase; 1.90A {Enterobacteria phage T7} SCOP: c.52.1.17 PDB: 1m0i_A 2pfj_A 1fzr_A 3cae_A
Probab=10.77 E-value=57 Score=25.39 Aligned_cols=12 Identities=50% Similarity=0.938 Sum_probs=9.8
Q ss_pred ccCCCc-chhhhc
Q 025323 10 GPVTST-DWCEKN 21 (254)
Q Consensus 10 g~~tS~-~wCE~n 21 (254)
|-+||. +|||.+
T Consensus 93 ~s~ttya~Wc~k~ 105 (138)
T 1m0d_A 93 GSPTSYGEFCEKH 105 (138)
T ss_dssp TCSCBHHHHHHHH
T ss_pred cCCCcHHHHHHHc
Confidence 457888 999996
No 9
>3msq_A Putative ubiquinone biosynthesis protein; COQ4 superfamily, structural genomics, joint center for STRU genomics, JCSG; 2.85A {Nostoc punctiforme}
Probab=9.41 E-value=67 Score=26.83 Aligned_cols=14 Identities=29% Similarity=0.819 Sum_probs=12.4
Q ss_pred ccchHHHHHHHhHH
Q 025323 202 QGHALWHTFMGFNS 215 (254)
Q Consensus 202 ~~H~~WHil~al~~ 215 (254)
++|=+||+++|.+.
T Consensus 124 e~HD~~HvLtG~~t 137 (224)
T 3msq_A 124 STHDIYHVVAGFDT 137 (224)
T ss_dssp HHHHHHHHHHTCCS
T ss_pred cchhhhhhccCCCC
Confidence 78999999999865
No 10
>3rf3_C Invasin IPAA, 70 kDa antigen; alpha-helix bundle domain, cytoskeletal protein, protein-Pro interactions, cell adhesion, cytoskeleton; 1.61A {Shigella flexneri}
Probab=9.37 E-value=89 Score=17.08 Aligned_cols=8 Identities=50% Similarity=0.551 Sum_probs=6.0
Q ss_pred chhhhhHH
Q 025323 32 LNTLSNVP 39 (254)
Q Consensus 32 ~NtlSNl~ 39 (254)
-|.+||+.
T Consensus 17 tnslsnli 24 (29)
T 3rf3_C 17 TNSLSNLI 24 (29)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 48888875
Done!