Query 025323
Match_columns 254
No_of_seqs 114 out of 437
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 08:01:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025323.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025323hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2dj7a1 g.39.1.3 (A:44-74) Act 46.6 1.3 9.7E-05 24.2 -0.7 9 16-24 20-28 (31)
2 d1g47a2 g.39.1.3 (A:36-70) Pin 9.1 24 0.0018 19.4 -0.6 8 16-23 22-29 (35)
3 d1nekd_ f.21.2.2 (D:) Succinat 7.0 71 0.0052 21.6 1.1 33 24-56 46-82 (113)
4 d2fomb1 b.47.1.3 (B:18-167) NS 7.0 45 0.0033 24.3 -0.0 12 203-214 29-40 (150)
5 d2fp7b1 b.47.1.3 (B:19-170) NS 6.9 46 0.0033 24.4 -0.0 12 203-214 28-39 (152)
6 d1kloa3 g.3.11.2 (A:122-172) L 4.6 1.2E+02 0.0086 17.4 0.9 8 6-13 38-45 (51)
7 d1rutx4 g.39.1.3 (X:114-146) L 4.5 84 0.0061 16.6 0.1 8 14-21 20-27 (33)
8 d1kloa2 g.3.11.2 (A:66-121) La 4.5 1.3E+02 0.0097 17.5 1.1 13 6-18 39-51 (56)
9 d1m0da_ c.52.1.17 (A:) Endonuc 4.2 90 0.0066 22.1 0.1 11 11-21 89-100 (129)
10 d1g9pa_ g.3.6.2 (A:) Atracotox 4.1 1.4E+02 0.01 16.4 0.8 11 10-20 9-20 (45)
No 1
>d2dj7a1 g.39.1.3 (A:44-74) Actin-binding LIM protein 3, abLIM-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.58 E-value=1.3 Score=24.22 Aligned_cols=9 Identities=33% Similarity=0.903 Sum_probs=7.6
Q ss_pred chhhhcccc
Q 025323 16 DWCEKNYVY 24 (254)
Q Consensus 16 ~wCE~nY~~ 24 (254)
.|||+||+.
T Consensus 20 PyCe~DY~~ 28 (31)
T d2dj7a1 20 PYCESDYHA 28 (31)
T ss_dssp EECTTHHHH
T ss_pred cccHHHHHH
Confidence 799999964
No 2
>d1g47a2 g.39.1.3 (A:36-70) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.05 E-value=24 Score=19.36 Aligned_cols=8 Identities=25% Similarity=1.086 Sum_probs=6.6
Q ss_pred chhhhccc
Q 025323 16 DWCEKNYV 23 (254)
Q Consensus 16 ~wCE~nY~ 23 (254)
-|||.+|.
T Consensus 22 pYCe~~Y~ 29 (35)
T d1g47a2 22 KYCEHDFQ 29 (35)
T ss_dssp EECHHHHH
T ss_pred ecChHhHH
Confidence 79999884
No 3
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=6.99 E-value=71 Score=21.57 Aligned_cols=33 Identities=12% Similarity=0.299 Sum_probs=23.8
Q ss_pred ccccccccchhhhhHHHHHHHHH----HHHHHHhhhc
Q 025323 24 YSSYIAEFLNTLSNVPCILLALF----GLINALRQRF 56 (254)
Q Consensus 24 ~s~~iaEf~NtlSNl~F~~~a~~----gl~~~~~~~~ 56 (254)
...+..+|+|.+-...|++...+ |++....++-
T Consensus 46 ~~~~~~~~~~~il~~l~l~~~~~H~~lGl~~IieDYi 82 (113)
T d1nekd_ 46 WIGFFASAFTKVFTLLALFSILIHAWIGMWQVLTDYV 82 (113)
T ss_dssp HHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHhHhhhHHHhc
Confidence 45678899999999999887765 5554455553
No 4
>d2fomb1 b.47.1.3 (B:18-167) NS3 protease {Dengue virus type 2 [TaxId: 11060]}
Probab=6.95 E-value=45 Score=24.34 Aligned_cols=12 Identities=33% Similarity=0.628 Sum_probs=9.0
Q ss_pred cchHHHHHHHhH
Q 025323 203 GHALWHTFMGFN 214 (254)
Q Consensus 203 ~H~~WHil~al~ 214 (254)
+|..||+--|-+
T Consensus 29 fHTmWHVTrGa~ 40 (150)
T d2fomb1 29 FHTMWHVTRGAV 40 (150)
T ss_dssp EEEEHHHHTTCC
T ss_pred EEEeeeecCCce
Confidence 599999865544
No 5
>d2fp7b1 b.47.1.3 (B:19-170) NS3 protease {West nile virus [TaxId: 11082]}
Probab=6.89 E-value=46 Score=24.36 Aligned_cols=12 Identities=50% Similarity=0.791 Sum_probs=9.0
Q ss_pred cchHHHHHHHhH
Q 025323 203 GHALWHTFMGFN 214 (254)
Q Consensus 203 ~H~~WHil~al~ 214 (254)
+|..||+--|.+
T Consensus 28 fHTmWHVTrGa~ 39 (152)
T d2fp7b1 28 FHTLWHTTKGAA 39 (152)
T ss_dssp EEEEHHHHTTCC
T ss_pred EEEeeeecCCce
Confidence 599999865544
No 6
>d1kloa3 g.3.11.2 (A:122-172) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.56 E-value=1.2e+02 Score=17.39 Aligned_cols=8 Identities=0% Similarity=0.339 Sum_probs=4.5
Q ss_pred CCccccCC
Q 025323 6 SSFWGPVT 13 (254)
Q Consensus 6 ~g~Wg~~t 13 (254)
+|||+.++
T Consensus 38 ~g~~~~~~ 45 (51)
T d1kloa3 38 PGYYNLQS 45 (51)
T ss_dssp TTCBCGGG
T ss_pred ccccCCCC
Confidence 56666543
No 7
>d1rutx4 g.39.1.3 (X:114-146) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.54 E-value=84 Score=16.62 Aligned_cols=8 Identities=25% Similarity=0.808 Sum_probs=6.0
Q ss_pred Ccchhhhc
Q 025323 14 STDWCEKN 21 (254)
Q Consensus 14 S~~wCE~n 21 (254)
.+-|||.|
T Consensus 20 G~lfCE~D 27 (33)
T d1rutx4 20 GSLFCEHD 27 (33)
T ss_dssp TEEEEGGG
T ss_pred CEEEEecC
Confidence 33799996
No 8
>d1kloa2 g.3.11.2 (A:66-121) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.47 E-value=1.3e+02 Score=17.48 Aligned_cols=13 Identities=15% Similarity=0.327 Sum_probs=7.6
Q ss_pred CCccccCCCcchh
Q 025323 6 SSFWGPVTSTDWC 18 (254)
Q Consensus 6 ~g~Wg~~tS~~wC 18 (254)
+||||.+++.+=|
T Consensus 39 ~G~yg~~~~~~~C 51 (56)
T d1kloa2 39 EGFFGNPLAPNPA 51 (56)
T ss_dssp TTEEECTTCSSGG
T ss_pred CCcccCCCCCCCC
Confidence 6888865543334
No 9
>d1m0da_ c.52.1.17 (A:) Endonuclease I (Holliday junction resolvase) {Bacteriophage T7 [TaxId: 10760]}
Probab=4.20 E-value=90 Score=22.10 Aligned_cols=11 Identities=45% Similarity=0.824 Sum_probs=7.7
Q ss_pred cCCCc-chhhhc
Q 025323 11 PVTST-DWCEKN 21 (254)
Q Consensus 11 ~~tS~-~wCE~n 21 (254)
.-|.- +|||++
T Consensus 89 sktTYa~WCek~ 100 (129)
T d1m0da_ 89 SPTSYGEFCEKH 100 (129)
T ss_dssp CSCBHHHHHHHH
T ss_pred CcCcHHHHHHHc
Confidence 34544 999996
No 10
>d1g9pa_ g.3.6.2 (A:) Atracotoxin-hv2a {Funnel-web spider (Hadronyche versuta) [TaxId: 6904]}
Probab=4.10 E-value=1.4e+02 Score=16.44 Aligned_cols=11 Identities=45% Similarity=0.806 Sum_probs=8.3
Q ss_pred ccCCCc-chhhh
Q 025323 10 GPVTST-DWCEK 20 (254)
Q Consensus 10 g~~tS~-~wCE~ 20 (254)
|+-+|+ |-||-
T Consensus 9 grcssnrdccel 20 (45)
T d1g9pa_ 9 GRCSSNRDCCEL 20 (45)
T ss_dssp SBCSSGGGSBTT
T ss_pred CcccCCcccccc
Confidence 456778 88887
Done!