BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025324
(254 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3THT|A Chain A, Crystal Structure And Rna Binding Properties Of The
RrmALKB DOMAINS In Human Abh8, An Enzyme Catalyzing Trna
Hypermodification, Northeast Structural Genomics
Consortium Target Hr5601b
pdb|3THT|B Chain B, Crystal Structure And Rna Binding Properties Of The
RrmALKB DOMAINS In Human Abh8, An Enzyme Catalyzing Trna
Hypermodification, Northeast Structural Genomics
Consortium Target Hr5601b
pdb|3THT|C Chain C, Crystal Structure And Rna Binding Properties Of The
RrmALKB DOMAINS In Human Abh8, An Enzyme Catalyzing Trna
Hypermodification, Northeast Structural Genomics
Consortium Target Hr5601b
pdb|3THT|D Chain D, Crystal Structure And Rna Binding Properties Of The
RrmALKB DOMAINS In Human Abh8, An Enzyme Catalyzing Trna
Hypermodification, Northeast Structural Genomics
Consortium Target Hr5601b
Length = 345
Score = 30.8 bits (68), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 19/98 (19%)
Query: 52 PNSCIVNIYDEGDCIPPHIDHHD-FLRPFCTVSFLTECNILFGSSLKIVGPGEFSGPISI 110
P+ +N Y+ G IP HID H F ++S +E + F I P +
Sbjct: 197 PDQMTINQYEPGQGIPAHIDTHSAFEDEIVSLSLGSEIVMDFKHPDGIAVP--------V 248
Query: 111 PLPVGSVLILNGNGADVAKHCVPAVPTKRISITFRKMD 148
LP S+L++ G + H IT RK D
Sbjct: 249 MLPRRSLLVMTGESRYLWTH----------GITCRKFD 276
>pdb|3A7F|A Chain A, Human Mst3 Kinase
pdb|3A7G|A Chain A, Human Mst3 Kinase
pdb|3A7G|B Chain B, Human Mst3 Kinase
pdb|3A7H|A Chain A, Human Mst3 Kinase In Complex With Atp
pdb|3A7H|B Chain B, Human Mst3 Kinase In Complex With Atp
pdb|3A7I|A Chain A, Human Mst3 Kinase In Complex With Adenine
pdb|3A7J|A Chain A, Human Mst3 Kinase In Complex With Mnadp
Length = 303
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 32/85 (37%), Gaps = 11/85 (12%)
Query: 158 PDPELMGIKAMVNSPSNKSPIEQNNRQKPLA-----------SYSPTTKSAFQQKNQNRN 206
P EL +K + P N P + N KPL S+ PT K + K RN
Sbjct: 218 PHSELHPMKVLFLIPKNNPPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLKHKFILRN 277
Query: 207 NKVPSGNTETPSRLKNNSFIIENDD 231
K S TE R K +DD
Sbjct: 278 AKKTSYLTELIDRYKRWKAEQSHDD 302
>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24) In Complex With Staurosporine
Length = 304
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 29/75 (38%), Gaps = 11/75 (14%)
Query: 158 PDPELMGIKAMVNSPSNKSPIEQNNRQKPLA-----------SYSPTTKSAFQQKNQNRN 206
P EL +K + P N P + N KPL S+ PT K + K RN
Sbjct: 203 PHSELHPMKVLFLIPKNNPPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLKHKFILRN 262
Query: 207 NKVPSGNTETPSRLK 221
K S TE R K
Sbjct: 263 AKKTSYLTELIDRYK 277
>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24)
Length = 304
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 29/75 (38%), Gaps = 11/75 (14%)
Query: 158 PDPELMGIKAMVNSPSNKSPIEQNNRQKPLA-----------SYSPTTKSAFQQKNQNRN 206
P EL +K + P N P + N KPL S+ PT K + K RN
Sbjct: 203 PHSELHPMKVLFLIPKNNPPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLKHKFILRN 262
Query: 207 NKVPSGNTETPSRLK 221
K S TE R K
Sbjct: 263 AKKTSYLTELIDRYK 277
>pdb|3THP|A Chain A, Crystal Structure And Rna Binding Properties Of The
RrmALKB DOMAINS In Human Abh8, An Enzyme Catalyzing Trna
Hypermodification, Northeast Structural Genomics
Consortium Target Hr5601b
Length = 345
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 56/151 (37%), Gaps = 32/151 (21%)
Query: 2 QFGCCYNYS---ADKDGNPPGIIRDEEVDPLPPMFKQMIKRMVRWHILPPTCIPNSCIVN 58
FG ++Y DKD G LP + + +++ +R + P+ +N
Sbjct: 154 HFGYEFHYENNNVDKDKPLSG--------GLPDICESFLEKWLRKGYIKHK--PDQXTIN 203
Query: 59 IYDEGDCIPPHIDHHD-FLRPFCTVSFLTECNILFGSSLKIVGPGEFSGPISIPLPVGSV 117
Y+ G IP HID H F ++S +E F I P + LP S+
Sbjct: 204 QYEPGQGIPAHIDTHSAFEDEIVSLSLGSEIVXDFKHPDGIAVP--------VXLPRRSL 255
Query: 118 LILNGNGADVAKHCVPAVPTKRISITFRKMD 148
L+ G + H IT RK D
Sbjct: 256 LVXTGESRYLWTH----------GITCRKFD 276
>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta
pdb|3ZHP|D Chain D, Human Mst3 (stk24) In Complex With Mo25beta
Length = 294
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 11/69 (15%)
Query: 158 PDPELMGIKAMVNSPSNKSPIEQNNRQKPLA-----------SYSPTTKSAFQQKNQNRN 206
P EL +K + P N P + N KPL S+ PT K + K RN
Sbjct: 223 PHSELHPMKVLFLIPKNNPPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLKHKFILRN 282
Query: 207 NKVPSGNTE 215
K S TE
Sbjct: 283 AKKTSYLTE 291
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,597,166
Number of Sequences: 62578
Number of extensions: 366462
Number of successful extensions: 715
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 711
Number of HSP's gapped (non-prelim): 10
length of query: 254
length of database: 14,973,337
effective HSP length: 97
effective length of query: 157
effective length of database: 8,903,271
effective search space: 1397813547
effective search space used: 1397813547
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)