BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025324
         (254 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|D3ZKD3|ALKB5_RAT RNA demethylase ALKBH5 OS=Rattus norvegicus GN=Alkbh5 PE=3 SV=1
          Length = 395

 Score = 77.4 bits (189), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 73/151 (48%), Gaps = 8/151 (5%)

Query: 3   FGCCYNYSADKDGNPPGIIRDE---EVDPLPPMFKQMIKRMVRWHILPPTCIPNSCIVNI 59
           FG  Y Y A      PG  R     +VD +P    Q++ + +  H + P    NS ++N 
Sbjct: 136 FGEGYTYGAQLQKRGPGQERLYPPGDVDEIPEWVHQLVIQKLVEHRVIPEGFVNSAVIND 195

Query: 60  YDEGDCIPPHID-HHDFLRPFCTVSFLTECNILFGSSLKIVGPGEFSGPI-SIPLPVGSV 117
           Y  G CI  H+D  H F RP  +VSF ++  + FG   +   P   S P+ S+P+  GSV
Sbjct: 196 YQPGGCIVSHVDPIHIFERPIVSVSFFSDSALCFGCKFQF-KPIRVSEPVLSLPVRRGSV 254

Query: 118 LILNGNGADVAKHCV--PAVPTKRISITFRK 146
            +L+G  AD   HC+    +  +R  I  RK
Sbjct: 255 TVLSGYAADEITHCIRPQDIKERRAVIILRK 285


>sp|Q66JG8|ALKB5_XENTR RNA demethylase ALKBH5 OS=Xenopus tropicalis GN=alkbh5 PE=2 SV=1
          Length = 358

 Score = 77.4 bits (189), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 72/151 (47%), Gaps = 8/151 (5%)

Query: 3   FGCCYNYSADKDGNPPGIIR---DEEVDPLPPMFKQMIKRMVRWHILPPTCIPNSCIVNI 59
           FG  Y Y A      PG  R     EVD +P    +++ R +  H + P    NS ++N 
Sbjct: 101 FGEGYTYGAQLQRRGPGQERLYPKGEVDEIPAWVNELVIRRLVEHRVIPEGFVNSAVIND 160

Query: 60  YDEGDCIPPHID-HHDFLRPFCTVSFLTECNILFGSSLKIVGPGEFSGPI-SIPLPVGSV 117
           Y  G CI  H+D  H F RP  +VSF ++  + FG   +   P   S P+  +P+  GSV
Sbjct: 161 YQPGGCIVSHVDPIHIFERPIVSVSFFSDSALCFGCKFQF-KPIRVSEPVFFLPVQRGSV 219

Query: 118 LILNGNGADVAKHCV--PAVPTKRISITFRK 146
            +L+G  AD   HC+    +  +R  +  RK
Sbjct: 220 TVLSGYAADEITHCIRPQDIKERRAVVILRK 250


>sp|Q6P6C2|ALKB5_HUMAN RNA demethylase ALKBH5 OS=Homo sapiens GN=ALKBH5 PE=1 SV=2
          Length = 394

 Score = 77.0 bits (188), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 73/151 (48%), Gaps = 8/151 (5%)

Query: 3   FGCCYNYSADKDGNPPGIIRDE---EVDPLPPMFKQMIKRMVRWHILPPTCIPNSCIVNI 59
           FG  Y Y A      PG  R     +VD +P    Q++ + +  H + P    NS ++N 
Sbjct: 135 FGEGYTYGAQLQKRGPGQERLYPPGDVDEIPEWVHQLVIQKLVEHRVIPEGFVNSAVIND 194

Query: 60  YDEGDCIPPHID-HHDFLRPFCTVSFLTECNILFGSSLKIVGPGEFSGPI-SIPLPVGSV 117
           Y  G CI  H+D  H F RP  +VSF ++  + FG   +   P   S P+ S+P+  GSV
Sbjct: 195 YQPGGCIVSHVDPIHIFERPIVSVSFFSDSALCFGCKFQF-KPIRVSEPVLSLPVRRGSV 253

Query: 118 LILNGNGADVAKHCV--PAVPTKRISITFRK 146
            +L+G  AD   HC+    +  +R  I  RK
Sbjct: 254 TVLSGYAADEITHCIRPQDIKERRAVIILRK 284


>sp|Q3TSG4|ALKB5_MOUSE RNA demethylase ALKBH5 OS=Mus musculus GN=Alkbh5 PE=1 SV=2
          Length = 395

 Score = 77.0 bits (188), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 73/151 (48%), Gaps = 8/151 (5%)

Query: 3   FGCCYNYSADKDGNPPGIIRDE---EVDPLPPMFKQMIKRMVRWHILPPTCIPNSCIVNI 59
           FG  Y Y A      PG  R     +VD +P    Q++ + +  H + P    NS ++N 
Sbjct: 136 FGEGYTYGAQLQKRGPGQERLYPPGDVDEIPDWVHQLVIQKLVEHRVIPEGFVNSAVIND 195

Query: 60  YDEGDCIPPHID-HHDFLRPFCTVSFLTECNILFGSSLKIVGPGEFSGPI-SIPLPVGSV 117
           Y  G CI  H+D  H F RP  +VSF ++  + FG   +   P   S P+ S+P+  GSV
Sbjct: 196 YQPGGCIVSHVDPIHIFERPIVSVSFFSDSALCFGCKFQF-KPIRVSEPVLSLPVRRGSV 254

Query: 118 LILNGNGADVAKHCV--PAVPTKRISITFRK 146
            +L+G  AD   HC+    +  +R  I  RK
Sbjct: 255 TVLSGYAADEITHCIRPQDIKERRAVIILRK 285


>sp|E1BH29|ALKB5_BOVIN RNA demethylase ALKBH5 OS=Bos taurus GN=ALKBH5 PE=3 SV=1
          Length = 394

 Score = 77.0 bits (188), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 73/151 (48%), Gaps = 8/151 (5%)

Query: 3   FGCCYNYSADKDGNPPGIIRDE---EVDPLPPMFKQMIKRMVRWHILPPTCIPNSCIVNI 59
           FG  Y Y A      PG  R     +VD +P    Q++ + +  H + P    NS ++N 
Sbjct: 135 FGEGYTYGAQLQKRGPGQERLYPPGDVDEIPEWVHQLVIQKLVEHRVIPEGFVNSAVIND 194

Query: 60  YDEGDCIPPHID-HHDFLRPFCTVSFLTECNILFGSSLKIVGPGEFSGPI-SIPLPVGSV 117
           Y  G CI  H+D  H F RP  +VSF ++  + FG   +   P   S P+ S+P+  GSV
Sbjct: 195 YQPGGCIVSHVDPIHIFERPIVSVSFFSDSALCFGCKFQF-KPIRVSEPVLSLPVRRGSV 253

Query: 118 LILNGNGADVAKHCV--PAVPTKRISITFRK 146
            +L+G  AD   HC+    +  +R  I  RK
Sbjct: 254 TVLSGYAADEITHCIRPQDIKERRAVIILRK 284


>sp|Q6GPB5|ALKB5_XENLA RNA demethylase ALKBH5 OS=Xenopus laevis GN=alkbh5 PE=2 SV=1
          Length = 360

 Score = 75.9 bits (185), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 75/152 (49%), Gaps = 10/152 (6%)

Query: 3   FGCCYNYSADKDGNPPGIIR---DEEVDPLPPMFKQM-IKRMVRWHILPPTCIPNSCIVN 58
           FG  Y Y A      PG  R     EVD +P    ++ I+R+V   I+P   + NS ++N
Sbjct: 103 FGEGYTYGAQLQRRGPGQERLYPKGEVDEIPGWVHELVIRRLVERRIIPEGFV-NSAVIN 161

Query: 59  IYDEGDCIPPHID-HHDFLRPFCTVSFLTECNILFGSSLKIVGPGEFSGPI-SIPLPVGS 116
            Y  G CI  H+D  H F RP  +VSF ++  + FG   +   P   S P+  +P+  GS
Sbjct: 162 DYQPGGCIVSHVDPIHIFERPIVSVSFFSDSALCFGCKFQF-KPIRVSEPVFFLPVRRGS 220

Query: 117 VLILNGNGADVAKHCV--PAVPTKRISITFRK 146
           V +L+G  AD   HC+    +  +R  +  RK
Sbjct: 221 VTVLSGYAADEITHCIRPQDIKERRAVVILRK 252


>sp|Q08BA6|ALKB5_DANRE RNA demethylase ALKBH5 OS=Danio rerio GN=alkbh5 PE=2 SV=1
          Length = 352

 Score = 74.3 bits (181), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 72/151 (47%), Gaps = 8/151 (5%)

Query: 3   FGCCYNYSADKDGNPPGIIR---DEEVDPLPPMFKQMIKRMVRWHILPPTCIPNSCIVNI 59
           FG  Y Y A  +   PG  R     EVD +P    +++   +  H + P    NS ++N 
Sbjct: 103 FGEGYTYGAQLEKRGPGQERLYSKGEVDDIPDWVHELVIDRLVTHGVIPEGFVNSAVIND 162

Query: 60  YDEGDCIPPHID-HHDFLRPFCTVSFLTECNILFGSSLKIVGPGEFSGPI-SIPLPVGSV 117
           Y  G CI  H+D  H F RP  +VSF ++  + FG    +  P   S P+  +P+  GSV
Sbjct: 163 YQPGGCIVSHVDPIHIFERPIVSVSFFSDSALCFGCKF-LFKPIRVSEPVLHLPVRRGSV 221

Query: 118 LILNGNGADVAKHCV--PAVPTKRISITFRK 146
            +L+G  AD   HC+    +  +R  I  RK
Sbjct: 222 TVLSGYAADDITHCIRPQDIKERRAVIILRK 252


>sp|Q5UR03|YL905_MIMIV Uncharacterized protein L905 OS=Acanthamoeba polyphaga mimivirus
           GN=MIMI_L905 PE=4 SV=1
          Length = 210

 Score = 41.6 bits (96), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 30/141 (21%)

Query: 29  LPPMFKQMIKRMVRWHILPPTCIPNSCIVNIYDEGDCIPPHIDHHDFLRPFCTVSFLTEC 88
           +P    Q+I +M+   I+     P+  IVN Y  G+ + PH D  D+ +           
Sbjct: 70  IPKYLDQLINQMILDKIIDQK--PDQIIVNEYKPGEGLKPHFDRKDYYQ----------- 116

Query: 89  NILFGSSLKIVGPGEF--SGPI----SIPLPVGSVLILNGNGADVAKHCVP--------- 133
           N++ G SL      EF  + PI     I +P  S+ I+  +   + KH +P         
Sbjct: 117 NVIIGLSLGSGTIMEFYKNKPIPEKKKIYIPPRSLYIIKDDARYIWKHGIPPRKYDEING 176

Query: 134 -AVPTK-RISITFRKMDDSKL 152
             +P + RISITFR +   K+
Sbjct: 177 KKIPRETRISITFRNVIKEKV 197


>sp|O60066|ALKBH_SCHPO Alpha-ketoglutarate-dependent dioxygenase abh1
           OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
           GN=abh1 PE=2 SV=3
          Length = 302

 Score = 38.9 bits (89), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 9/85 (10%)

Query: 53  NSCIVNIYDEGDCIPPHID--HHDFLRPFCTVSFLTECNILFGSSLKIVGPGEFSGPISI 110
            + IVN Y  GD +  HID    D   P  ++S   +C  L G+  +   P       ++
Sbjct: 189 EAAIVNFYSPGDTLSAHIDESEEDLTLPLISLSMGLDCIYLIGTESRSEKPS------AL 242

Query: 111 PLPVGSVLILNGNGADVAKHCVPAV 135
            L  G V+I+ G     A H VP +
Sbjct: 243 RLHSGDVVIMTGTSRK-AFHAVPKI 266


>sp|Q6PHQ8|NAA35_MOUSE N-alpha-acetyltransferase 35, NatC auxiliary subunit OS=Mus
           musculus GN=Naa35 PE=1 SV=1
          Length = 725

 Score = 35.8 bits (81), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 32  MFKQMIKRMVRWHILPPTCIPNSCIVNIYDEGDCIPPHIDHHDFLRPFCTV 82
           + + M+K  +R  + PP   P  C+ N +   DCI   + H   +RPFC++
Sbjct: 387 LMQDMVKDALRSFVSPPVLSPKCCLYNNHQAKDCIDSFVTH--CVRPFCSL 435


>sp|Q6DKG0|NAA35_RAT N-alpha-acetyltransferase 35, NatC auxiliary subunit OS=Rattus
           norvegicus GN=Naa35 PE=2 SV=1
          Length = 725

 Score = 35.8 bits (81), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 32  MFKQMIKRMVRWHILPPTCIPNSCIVNIYDEGDCIPPHIDHHDFLRPFCTV 82
           + + M+K  +R  + PP   P  C+ N +   DCI   + H   +RPFC++
Sbjct: 387 LMQDMVKDALRSFVSPPVLSPKCCLYNNHQAKDCIDSFVTH--CVRPFCSL 435


>sp|O01761|UNC89_CAEEL Muscle M-line assembly protein unc-89 OS=Caenorhabditis elegans
            GN=unc-89 PE=1 SV=3
          Length = 8081

 Score = 34.3 bits (77), Expect = 0.86,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 13/96 (13%)

Query: 133  PAVPTKR-------ISITFRKMDDSKLPYKFSPDPELMGIKAMVNSPSNKSPIEQNNRQK 185
            PA PTK+        S T +  ++ K P K    PE   ++ +  SP  KSP + +++ K
Sbjct: 1574 PASPTKKEKSPEKPASPTKKSENEVKSPTKKEKSPEKSVVEEL-KSPKEKSPEKADDKPK 1632

Query: 186  PLASYSPTTKSAFQQKNQNRNNKVPSGNTETPSRLK 221
                 SPT K    +K+   + K P+   ++P +++
Sbjct: 1633 -----SPTKKEKSPEKSATEDVKSPTKKEKSPEKVE 1663


>sp|Q9NXW9|ALKB4_HUMAN Alpha-ketoglutarate-dependent dioxygenase alkB homolog 4 OS=Homo
           sapiens GN=ALKBH4 PE=1 SV=1
          Length = 302

 Score = 34.3 bits (77), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 108 ISIPLPVGSVLILNGNGADVAKHCVPA--VPTKRISITFRKM 147
           ++IPLP  S+L+L G      KH +    +  +R+ +TFR++
Sbjct: 232 VAIPLPARSLLVLTGAARHQWKHAIHRRHIEARRVCVTFREL 273


>sp|Q918W3|RDRP_ICRSV RNA replication protein OS=Indian citrus ringspot virus (isolate
           Kinnow mandarin/India/K1/1996) GN=ORF1 PE=3 SV=1
          Length = 1658

 Score = 33.9 bits (76), Expect = 1.2,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 62/157 (39%), Gaps = 32/157 (20%)

Query: 53  NSCIVNIYDEGDCIPPHIDHHDFLRPFCTVSFLTECNILFGSSLKIVGPGEFS-----GP 107
           N+C+   +D+G  I  H D  D      TV+           ++ + G   FS     G 
Sbjct: 576 NTCLAQTHDQGARIGYHADDEDCYDKDVTVA-----------TVNLTGNATFSLKTATGT 624

Query: 108 ISIPLPVGSVLILNGNGADVAKHCVPAVPTKRISITFRKMDDSKLPYKFSPDP-ELMGIK 166
            +  L  G  ++L        KH +    T R S+TFR        ++  P P +L  + 
Sbjct: 625 RTWKLKPGDFIVLKPGAQGCTKHAISDCTTNRTSLTFR--------WQARPCPSQLRRVV 676

Query: 167 AM--VNSPSNKSPIEQ-----NNRQKPLASYSPTTKS 196
            +  VN+P  KS  +Q     +N   P  + +P + +
Sbjct: 677 NLGNVNNPKRKSKAQQWTPKTSNSDSPRLTQTPNSPT 713


>sp|Q07G10|ALKB8_XENTR Alkylated DNA repair protein alkB homolog 8 OS=Xenopus tropicalis
           GN=alkbh8 PE=2 SV=2
          Length = 628

 Score = 32.0 bits (71), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 19/126 (15%)

Query: 8   NYSADKDGNPPGIIRDEEVDPLPPMFKQMIKRMVRWHILPPTCIPNSCIVNIYDEGDCIP 67
           N + DKD   PG         LP    + +++ V+  ++     P+   +N Y+ G  IP
Sbjct: 185 NNNVDKDKPLPG--------GLPDFCTEALRKCVQRGLIKHD--PDQLTINQYEPGQGIP 234

Query: 68  PHIDHHD-FLRPFCTVSFLTECNILFGSSLKIVGPGEFSGPISIPLPVGSVLILNGNGAD 126
           PH+D H  F     ++S   E  + F      V P        + LP  S+LI++G    
Sbjct: 235 PHVDTHSAFEDEILSLSLGAEIVMDFKHPNGSVVP--------VMLPQRSLLIMSGESRY 286

Query: 127 VAKHCV 132
           +  H +
Sbjct: 287 LWTHGI 292


>sp|Q5RBT3|NAA35_PONAB N-alpha-acetyltransferase 35, NatC auxiliary subunit OS=Pongo
           abelii GN=NAA35 PE=2 SV=1
          Length = 725

 Score = 31.6 bits (70), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 32  MFKQMIKRMVRWHILPPTCIPNSCIVNIYDEGDCIPPHIDHHDFLRPFCTV 82
           + + M+K  +R  + PP   P   + N +   DCI   + H   +RPFC++
Sbjct: 387 LMQDMVKDALRSFVSPPVLSPKCYLYNNHQAKDCIDSFVTH--CVRPFCSL 435


>sp|Q5VZE5|NAA35_HUMAN N-alpha-acetyltransferase 35, NatC auxiliary subunit OS=Homo
           sapiens GN=NAA35 PE=1 SV=1
          Length = 725

 Score = 31.6 bits (70), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 32  MFKQMIKRMVRWHILPPTCIPNSCIVNIYDEGDCIPPHIDHHDFLRPFCTV 82
           + + M+K  +R  + PP   P   + N +   DCI   + H   +RPFC++
Sbjct: 387 LMQDMVKDALRSFVSPPVLSPKCYLYNNHQAKDCIDSFVTH--CVRPFCSL 435


>sp|Q4R708|NAA35_MACFA N-alpha-acetyltransferase 35, NatC auxiliary subunit OS=Macaca
           fascicularis GN=NAA35 PE=2 SV=1
          Length = 725

 Score = 31.6 bits (70), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 32  MFKQMIKRMVRWHILPPTCIPNSCIVNIYDEGDCIPPHIDHHDFLRPFCTV 82
           + + M+K  +R  + PP   P   + N +   DCI   + H   +RPFC++
Sbjct: 387 LMQDMVKDALRSFVSPPVLSPKCYLYNNHQAKDCIDSFVTH--CVRPFCSL 435


>sp|Q5ZHV2|NAA35_CHICK N-alpha-acetyltransferase 35, NatC auxiliary subunit OS=Gallus
           gallus GN=NAA35 PE=2 SV=1
          Length = 725

 Score = 31.6 bits (70), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 32  MFKQMIKRMVRWHILPPTCIPNSCIVNIYDEGDCIPPHIDHHDFLRPFCTV 82
           + + M+K  +R  + PP   P  C+ N +   D I   + H   +RPFC++
Sbjct: 387 LMQDMVKDALRSFVSPPVLSPKCCLYNNHQAKDYIDSFVTH--CVRPFCSL 435


>sp|P10401|POLY_DROME Retrovirus-related Pol polyprotein from transposon gypsy
           OS=Drosophila melanogaster GN=pol PE=4 SV=1
          Length = 1035

 Score = 30.8 bits (68), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 24/37 (64%)

Query: 210 PSGNTETPSRLKNNSFIIENDDFPPLGSSNSGNRARF 246
           P+ N+ET + +  NSF I+  + PPL SS++G   RF
Sbjct: 869 PAFNSETVTSMLKNSFGIDIVNAPPLHSSSNGQVERF 905


>sp|Q86I31|GACFF_DICDI Rho GTPase-activating protein gacFF OS=Dictyostelium discoideum
           GN=gacFF PE=2 SV=1
          Length = 885

 Score = 30.8 bits (68), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 62/164 (37%), Gaps = 35/164 (21%)

Query: 3   FGCCYNYSADKDGNPPGIIRDEEVDPLPPMFKQMIKRMVRWHILPPTCIPNSCIVNIYDE 62
            G C NY   K+    GI  ++E        K M + +  + + P T + +S    +Y  
Sbjct: 423 LGYCSNYYYLKNQQKGGICTNKE--------KYMNRAISMYGVTPLTSLSSSKEGWLYKR 474

Query: 63  GDCIPPHIDHHDFLRPFCTVSFLTECNILFGSSLKIVGPGEFSGPISIPLPVGSVLILNG 122
           GD         D LR +    F+   + LF           +    +   P G +L+ +G
Sbjct: 475 GD---------DLLRIWKKRYFVLRDSSLF-----------YFKHQNDNFPCGVILLNHG 514

Query: 123 N-----GADVAKHCVPAVPTKRISITFRKMDDSKLPYKFSPDPE 161
                  A   K+C   + +K  +IT   +   ++PY  S D E
Sbjct: 515 TKLKRASASTRKNCFKILQSKNSTITM--VHKKRMPYYLSTDKE 556


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.137    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,757,971
Number of Sequences: 539616
Number of extensions: 5021340
Number of successful extensions: 17288
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 16466
Number of HSP's gapped (non-prelim): 802
length of query: 254
length of database: 191,569,459
effective HSP length: 115
effective length of query: 139
effective length of database: 129,513,619
effective search space: 18002393041
effective search space used: 18002393041
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)