Query 025324
Match_columns 254
No_of_seqs 138 out of 1130
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 04:42:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025324.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025324hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4176 Uncharacterized conser 100.0 1.3E-29 2.8E-34 236.1 13.4 150 1-158 166-315 (323)
2 PF13532 2OG-FeII_Oxy_2: 2OG-F 100.0 1.1E-29 2.5E-34 216.3 7.8 130 3-145 53-194 (194)
3 PRK15401 alpha-ketoglutarate-d 100.0 9.3E-28 2E-32 212.7 14.2 129 5-147 75-213 (213)
4 TIGR00568 alkb DNA alkylation 99.9 8.6E-25 1.9E-29 187.6 12.5 114 4-132 53-169 (169)
5 COG3145 AlkB Alkylated DNA rep 99.9 2.7E-21 5.7E-26 169.3 11.2 108 27-142 82-194 (194)
6 KOG3200 Uncharacterized conser 99.8 1E-20 2.2E-25 163.2 10.8 134 13-148 48-215 (224)
7 KOG3959 2-Oxoglutarate- and ir 99.6 2.3E-16 4.9E-21 141.6 1.6 146 2-155 109-285 (306)
8 KOG2731 DNA alkylation damage 98.6 4E-08 8.6E-13 93.0 5.1 121 2-133 169-292 (378)
9 PF03171 2OG-FeII_Oxy: 2OG-Fe( 97.8 1.2E-05 2.6E-10 61.5 2.3 83 52-146 1-96 (98)
10 PF12933 FTO_NTD: FTO catalyti 97.0 0.0009 2E-08 61.0 4.4 95 49-147 135-251 (253)
11 PF13640 2OG-FeII_Oxy_3: 2OG-F 96.5 0.0023 4.9E-08 48.9 3.0 83 55-145 1-98 (100)
12 PF12851 Tet_JBP: Oxygenase do 95.6 0.11 2.4E-06 44.8 9.6 72 65-145 86-168 (171)
13 PRK05467 Fe(II)-dependent oxyg 95.5 0.089 1.9E-06 47.6 8.9 84 54-146 81-176 (226)
14 PF09859 Oxygenase-NA: Oxygena 94.5 0.21 4.7E-06 43.4 8.2 107 28-143 42-167 (173)
15 smart00702 P4Hc Prolyl 4-hydro 94.1 0.75 1.6E-05 38.7 10.6 107 31-145 59-176 (178)
16 COG3128 PiuC Uncharacterized i 93.1 0.24 5.3E-06 44.2 6.0 82 56-147 85-180 (229)
17 PF13759 2OG-FeII_Oxy_5: Putat 91.7 0.39 8.4E-06 37.2 5.0 86 55-144 2-100 (101)
18 TIGR02466 conserved hypothetic 90.1 5.4 0.00012 35.4 11.3 90 51-144 94-196 (201)
19 TIGR01762 chlorin-enz chlorina 82.8 15 0.00033 34.0 10.6 39 107-149 208-249 (288)
20 PF08007 Cupin_4: Cupin superf 75.9 7.8 0.00017 36.3 6.4 84 53-145 112-208 (319)
21 COG3826 Uncharacterized protei 65.3 41 0.00088 30.3 8.0 103 27-135 103-220 (236)
22 KOG2731 DNA alkylation damage 63.6 3.3 7.2E-05 40.1 1.1 44 51-95 313-362 (378)
23 PF05118 Asp_Arg_Hydrox: Aspar 58.8 12 0.00026 31.6 3.6 81 51-148 78-161 (163)
24 COG2850 Uncharacterized conser 54.2 73 0.0016 31.3 8.3 106 27-145 97-213 (383)
25 PLN02904 oxidoreductase 49.3 44 0.00096 31.9 6.1 42 107-148 255-305 (357)
26 PTZ00273 oxidase reductase; Pr 49.1 34 0.00073 31.9 5.2 42 107-148 226-275 (320)
27 COG3751 EGL-9 Predicted prolin 44.2 60 0.0013 30.1 5.9 83 53-143 136-235 (252)
28 PLN00052 prolyl 4-hydroxylase; 40.9 3.2E+02 0.007 25.9 12.9 116 31-147 111-251 (310)
29 PLN02997 flavonol synthase 38.4 58 0.0013 30.7 5.0 42 107-148 230-280 (325)
30 PLN02947 oxidoreductase 32.9 94 0.002 29.9 5.5 42 107-148 272-322 (374)
31 PLN03001 oxidoreductase, 2OG-F 30.1 1.4E+02 0.003 27.3 5.9 41 108-148 164-213 (262)
32 PLN02485 oxidoreductase 29.7 1.4E+02 0.0031 27.8 6.1 42 107-148 237-287 (329)
33 PLN02216 protein SRG1 29.1 1.8E+02 0.0039 27.7 6.7 41 108-148 259-308 (357)
34 PLN00417 oxidoreductase, 2OG-F 27.3 1.4E+02 0.003 28.4 5.6 42 107-148 251-301 (348)
35 PLN02750 oxidoreductase, 2OG-F 26.4 1.8E+02 0.0039 27.5 6.2 42 107-148 242-292 (345)
36 PLN02912 oxidoreductase, 2OG-F 26.2 1.1E+02 0.0024 29.1 4.7 43 107-149 244-295 (348)
37 PLN02515 naringenin,2-oxogluta 25.5 2.3E+02 0.0049 27.2 6.7 42 107-148 244-294 (358)
38 PF13621 Cupin_8: Cupin-like d 25.0 70 0.0015 27.4 2.9 37 107-147 208-246 (251)
39 COG5285 Protein involved in bi 22.4 85 0.0018 29.9 3.0 38 107-148 192-231 (299)
No 1
>KOG4176 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.96 E-value=1.3e-29 Score=236.15 Aligned_cols=150 Identities=43% Similarity=0.872 Sum_probs=141.8
Q ss_pred CccCceeecCCCCCCCCCCccCCCCCCCCcHHHHHHHHHHHHcccCCCCCCCCeEEEeecCCCCCCCCCCCCCCCCCCEE
Q 025324 1 MQFGCCYNYSADKDGNPPGIIRDEEVDPLPPMFKQMIKRMVRWHILPPTCIPNSCIVNIYDEGDCIPPHIDHHDFLRPFC 80 (254)
Q Consensus 1 ~~fG~~Y~Y~~~~~~~~pgi~~~~~~~piP~~L~~Li~rLv~~~ilp~~~~pn~clIN~Y~~Gd~I~pH~D~~~f~~pIv 80 (254)
+|||+.|+|.++.+++.++ .++||..++.++++|+.+.++++ .||+|+||+|++|++|.+|+|+++|++||+
T Consensus 166 iq~G~~f~y~~~~~d~~~~------~~piPs~~~~ii~rlv~~~~ip~--~pd~~~iN~Ye~G~~i~ph~~~~~F~~Pi~ 237 (323)
T KOG4176|consen 166 IQLGYPFDYRTNNVDESKP------VDPIPSLFKSIIDRLVSWRVIPE--RPDQCTINFYEPGDGIPPHIDHSAFLDPIS 237 (323)
T ss_pred eecCceeccCCCcccccCc------cCCCchHHHHHHHHhhhhccCCC--CCCeeEEEeeCCCCCCCCCCChHHhcCceE
Confidence 6999999999997766544 68999999999999999999998 799999999999999999999999999999
Q ss_pred EEcCCCceeEEeecccccCCCCCCCccEEEEcCCCcEEEeCCCcccccceecCCCCCCcEEEEEecccCCCCCCCCCC
Q 025324 81 TVSFLTECNILFGSSLKIVGPGEFSGPISIPLPVGSVLILNGNGADVAKHCVPAVPTKRISITFRKMDDSKLPYKFSP 158 (254)
Q Consensus 81 sLSLGs~~~m~Fg~~~~~~~~~~~~~~~~l~L~~GSLlVMsG~aR~~w~H~Ip~~r~~RISLTFR~~~~~~~p~~~~~ 158 (254)
+|||.++|+|.|++....+..+.+.+...++|+.|++++|.|.+.+..+|+++..+++|||||||++++.+++++|.|
T Consensus 238 slS~lSe~~m~Fg~~~~~~~~~~~~g~~s~p~~~g~~lvi~~~~ad~~~~~~~~~~~kRisitfrki~~~~~~~~~~~ 315 (323)
T KOG4176|consen 238 SLSFLSECTMEFGHGLLSDNIGNFRGSLSLPLRYGSVLVIRGRSADVAPHCIRPSRNKRISITFRKIRPDPCFCEPPP 315 (323)
T ss_pred EEEeecceeEEecccccccCccccccccccccccCeEEEeCCCcccccccccCCCCCceEEEEEEEeccCCCCCCCCC
Confidence 999999999999999877777888888999999999999999999999999999999999999999999999999999
No 2
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=99.96 E-value=1.1e-29 Score=216.30 Aligned_cols=130 Identities=33% Similarity=0.640 Sum_probs=96.0
Q ss_pred cCceeecCCCCCCCCCCccCCCCCCCCcHHHHHHHHHHHHcccCCCCCCCCeEEEeecCCCCCCCCCCCCCC--CCCCEE
Q 025324 3 FGCCYNYSADKDGNPPGIIRDEEVDPLPPMFKQMIKRMVRWHILPPTCIPNSCIVNIYDEGDCIPPHIDHHD--FLRPFC 80 (254)
Q Consensus 3 fG~~Y~Y~~~~~~~~pgi~~~~~~~piP~~L~~Li~rLv~~~ilp~~~~pn~clIN~Y~~Gd~I~pH~D~~~--f~~pIv 80 (254)
.|..|+|+... .+....++++|++|..+++++.+......++.||+|+||+|.+|++|++|+|+.+ ++.+|+
T Consensus 53 ~~~~y~y~~~~------~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~n~~liN~Y~~g~~i~~H~D~~~~~~~~~I~ 126 (194)
T PF13532_consen 53 DGPSYRYSGKR------PVRSKPWPPFPEWLSRLLERLVEATGIPPGWRPNQCLINYYRDGSGIGPHSDDEEYGFGPPIA 126 (194)
T ss_dssp CT--CCCTCC-------EECCCEBSCCHHHHHHHHHHHHHHHT-SHSS--SEEEEEEESSTT-EEEE---TTC-CCSEEE
T ss_pred CCCCeEcCCcc------ccCCCCCCCccHHHHHHHHHHHHHhccccCCCCCEEEEEecCCCCCcCCCCCcccccCCCcEE
Confidence 35677777651 2345678899999999999988754333456899999999999999999999875 588999
Q ss_pred EEcCCCceeEEeecccccCCCCCCCccEEEEcCCCcEEEeCCCcccccceecCCCCC----------CcEEEEEe
Q 025324 81 TVSFLTECNILFGSSLKIVGPGEFSGPISIPLPVGSVLILNGNGADVAKHCVPAVPT----------KRISITFR 145 (254)
Q Consensus 81 sLSLGs~~~m~Fg~~~~~~~~~~~~~~~~l~L~~GSLlVMsG~aR~~w~H~Ip~~r~----------~RISLTFR 145 (254)
+||||++|+|.|+... +..+.+.|.|++|||+||+|++|+.| |+|++... .|||||||
T Consensus 127 slSLG~~~~~~f~~~~------~~~~~~~~~L~~gsl~vm~g~~r~~~-H~I~~~~~~~~~~~~~~~~RislTfR 194 (194)
T PF13532_consen 127 SLSLGSSRVFRFRNKS------DDDEPIEVPLPPGSLLVMSGEARYDW-HGIPPVKKDTHPSHYVRGRRISLTFR 194 (194)
T ss_dssp EEEEES-EEEEEEECG------GTS-EEEEEE-TTEEEEEETTHHHHE-EEE-S-SCEEEESTEE-S-EEEEEEE
T ss_pred EEEEccCceEEEeecc------CCCccEEEEcCCCCEEEeChHHhhhe-eEcccccCCccccccCCCCEEEEEeC
Confidence 9999999999998752 12248899999999999999999999 99999444 89999999
No 3
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=99.95 E-value=9.3e-28 Score=212.70 Aligned_cols=129 Identities=25% Similarity=0.387 Sum_probs=102.1
Q ss_pred ceeecCCCCCCCCCCccCCCCCCCCcHHHHHHHHHHHHcccCCCCCCCCeEEEeecCCCCCCCCCCCCCC--CCCCEEEE
Q 025324 5 CCYNYSADKDGNPPGIIRDEEVDPLPPMFKQMIKRMVRWHILPPTCIPNSCIVNIYDEGDCIPPHIDHHD--FLRPFCTV 82 (254)
Q Consensus 5 ~~Y~Y~~~~~~~~pgi~~~~~~~piP~~L~~Li~rLv~~~ilp~~~~pn~clIN~Y~~Gd~I~pH~D~~~--f~~pIvsL 82 (254)
..|.|+... ......+++||++|.+|.+++....-+. .+.||+||||+|.+|++|+||+|+.+ +..||+||
T Consensus 75 ~~YrYs~~~------~~~~~pwp~~P~~l~~L~~~~~~~~~~~-~~~p~a~LvN~Y~~G~~mg~H~D~~E~~~~~pI~Sv 147 (213)
T PRK15401 75 RGYRYSPID------PLTGKPWPAMPASFLALAQRAAAAAGFP-GFQPDACLINRYAPGAKLSLHQDKDERDFRAPIVSV 147 (213)
T ss_pred CCcccCCcC------CCCCCCCCCchHHHHHHHHHHHHHcCCC-CCCCCEEEEEeccCcCccccccCCCcccCCCCEEEE
Confidence 367777541 0134567888999999999976542222 46899999999999999999999633 78899999
Q ss_pred cCCCceeEEeecccccCCCCCCCccEEEEcCCCcEEEeCCCcccccceecCCCC--------CCcEEEEEecc
Q 025324 83 SFLTECNILFGSSLKIVGPGEFSGPISIPLPVGSVLILNGNGADVAKHCVPAVP--------TKRISITFRKM 147 (254)
Q Consensus 83 SLGs~~~m~Fg~~~~~~~~~~~~~~~~l~L~~GSLlVMsG~aR~~w~H~Ip~~r--------~~RISLTFR~~ 147 (254)
|||++|+|.|+... ..+ ...+|.|++||||||+|++|+ |.|+|++.+ ..|||||||++
T Consensus 148 SLG~~~~F~~~~~~----~~~--~~~~l~L~~Gdllvm~G~sr~-~~HgVp~~~~~~~p~~g~~RINLTFR~~ 213 (213)
T PRK15401 148 SLGLPAVFQFGGLK----RSD--PLQRILLEHGDVVVWGGPSRL-RYHGILPLKAGEHPLTGECRINLTFRKA 213 (213)
T ss_pred eCCCCeEEEecccC----CCC--ceEEEEeCCCCEEEECchHhh-eeccCCcCCCCcCCCCCCCeEEEEeEcC
Confidence 99999999998752 122 367999999999999999997 559999843 37999999974
No 4
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=99.92 E-value=8.6e-25 Score=187.60 Aligned_cols=114 Identities=24% Similarity=0.392 Sum_probs=92.4
Q ss_pred CceeecCCCCCCCCCCccCCCCCCCCcHHHHHHHHHHHHc-ccCCCCCCCCeEEEeecCCCCCCCCCCCCCC--CCCCEE
Q 025324 4 GCCYNYSADKDGNPPGIIRDEEVDPLPPMFKQMIKRMVRW-HILPPTCIPNSCIVNIYDEGDCIPPHIDHHD--FLRPFC 80 (254)
Q Consensus 4 G~~Y~Y~~~~~~~~pgi~~~~~~~piP~~L~~Li~rLv~~-~ilp~~~~pn~clIN~Y~~Gd~I~pH~D~~~--f~~pIv 80 (254)
|+.|+|+++.+. ....+++||++|..|.+++.+. ++. .+.||+||||+|.+|++|+||+|..+ +..||+
T Consensus 53 g~~Y~ys~~~~~------~~~~~p~~P~~L~~L~~~v~~~~g~~--~~~~n~~LvN~Y~~Gd~mg~H~D~~e~~~~~pI~ 124 (169)
T TIGR00568 53 GQGYLYSPKDPQ------TNKPWPAMPQDLGDLCERVATAAGFP--DFQPDACLVNRYAPGATLSLHQDRDEPDLRAPLL 124 (169)
T ss_pred CCcccCCCcccC------CCCCCCCCCHHHHHHHHHHHHHhCCC--CCCCCEEEEEeecCCCccccccccccccCCCCEE
Confidence 899999988321 2344556999999999997543 332 35899999999999999999999755 467999
Q ss_pred EEcCCCceeEEeecccccCCCCCCCccEEEEcCCCcEEEeCCCcccccceec
Q 025324 81 TVSFLTECNILFGSSLKIVGPGEFSGPISIPLPVGSVLILNGNGADVAKHCV 132 (254)
Q Consensus 81 sLSLGs~~~m~Fg~~~~~~~~~~~~~~~~l~L~~GSLlVMsG~aR~~w~H~I 132 (254)
|||||++|+|.|+.+. .. ..+.+|.|++||||||+|++|+.| |||
T Consensus 125 SvSLG~~r~F~~~~~~----~~--~~~~~l~L~sGsllvM~G~sR~~~-Hgv 169 (169)
T TIGR00568 125 SVSLGLPAIFLIGGLK----RN--DPPKRLRLHSGDVVIMGGESRLAF-HGV 169 (169)
T ss_pred EEeCCCCEEEEecCCc----CC--CceEEEEeCCCCEEEECCchhccc-cCC
Confidence 9999999999998762 11 236899999999999999999855 987
No 5
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]
Probab=99.85 E-value=2.7e-21 Score=169.29 Aligned_cols=108 Identities=20% Similarity=0.307 Sum_probs=83.3
Q ss_pred CCCcHHHHHHHHHHHHcccCCCCCCCCeEEEeecCCCCCCCCCCCCCCCC--CCEEEEcCCCceeEEeecccccCCCCCC
Q 025324 27 DPLPPMFKQMIKRMVRWHILPPTCIPNSCIVNIYDEGDCIPPHIDHHDFL--RPFCTVSFLTECNILFGSSLKIVGPGEF 104 (254)
Q Consensus 27 ~piP~~L~~Li~rLv~~~ilp~~~~pn~clIN~Y~~Gd~I~pH~D~~~f~--~pIvsLSLGs~~~m~Fg~~~~~~~~~~~ 104 (254)
.+||+++....+...+.+.- .+.||+||||+|.+|++|+||+|.+.+. .+|+|||||++|+|.|+... . .
T Consensus 82 ~p~p~l~~~~~~~~~~~g~~--~~~~ea~Lvn~Y~pGd~ig~HqD~~e~~~~~~v~slSLg~~~~F~~~~~~----r--~ 153 (194)
T COG3145 82 KPWPPLLALFHDLFGAAGYP--FEGPEAVLVNRYRPGASIGWHQDKDEEDDRPPVASLSLGAPCIFRLRGRR----R--R 153 (194)
T ss_pred CCCCccHHHHHHHHHHhcCC--CCChhheeEEeccCCCccccccccccccCCCceEEEecCCCeEEEecccc----C--C
Confidence 34454443333333344543 4588999999999999999999986643 48999999999999999862 1 1
Q ss_pred CccEEEEcCCCcEEEeCCCcccccceecCC---CCCCcEEE
Q 025324 105 SGPISIPLPVGSVLILNGNGADVAKHCVPA---VPTKRISI 142 (254)
Q Consensus 105 ~~~~~l~L~~GSLlVMsG~aR~~w~H~Ip~---~r~~RISL 142 (254)
....++.|++||+|||.|.+|+.|.|+||+ ....||||
T Consensus 154 ~~~~~~~L~~Gdvvvm~G~~r~~~~h~~p~~~~~~~~Rinl 194 (194)
T COG3145 154 GPGLRLRLEHGDVVVMGGPSRLAWHHIIPKTSRLTGQRINL 194 (194)
T ss_pred CCceeEEecCCCEEEecCCccccccccccccccCCcccccC
Confidence 237899999999999999999999999998 34467764
No 6
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.84 E-value=1e-20 Score=163.18 Aligned_cols=134 Identities=23% Similarity=0.301 Sum_probs=109.7
Q ss_pred CCCCCCCccC--CCCCCCCcHHHHHHHHHHHHcccCCCCCCCCeEEEeecCCCCCCCCCCCCCCCCCCEEEEcCCCceeE
Q 025324 13 KDGNPPGIIR--DEEVDPLPPMFKQMIKRMVRWHILPPTCIPNSCIVNIYDEGDCIPPHIDHHDFLRPFCTVSFLTECNI 90 (254)
Q Consensus 13 ~~~~~pgi~~--~~~~~piP~~L~~Li~rLv~~~ilp~~~~pn~clIN~Y~~Gd~I~pH~D~~~f~~pIvsLSLGs~~~m 90 (254)
++.|..|+.. .+.++.+|+||+.+++++-..|+|+. ..|+++||+|.+|++|+||.|...|.+.|.+||||+.|+|
T Consensus 48 RLqNyGGvvh~~glipeelP~wLq~~v~kinnlglF~s--~~NHVLVNeY~pgqGImPHtDGPaf~piVstiSlGsh~vl 125 (224)
T KOG3200|consen 48 RLQNYGGVVHKTGLIPEELPPWLQYYVDKINNLGLFKS--PANHVLVNEYLPGQGIMPHTDGPAFHPIVSTISLGSHTVL 125 (224)
T ss_pred hhhhcCCccccCCcCccccCHHHHHHHHHhhcccccCC--CcceeEeecccCCCCcCcCCCCCcccceEEEEecCCceEE
Confidence 3445545332 34567899999999999888899865 7899999999999999999999999999999999999999
Q ss_pred EeecccccCCC-C--C----CCccEEEEcCCCcEEEeCCCcccccceecCC-------------------------CCCC
Q 025324 91 LFGSSLKIVGP-G--E----FSGPISIPLPVGSVLILNGNGADVAKHCVPA-------------------------VPTK 138 (254)
Q Consensus 91 ~Fg~~~~~~~~-~--~----~~~~~~l~L~~GSLlVMsG~aR~~w~H~Ip~-------------------------~r~~ 138 (254)
.|......+.. + . .+..+.+.|+++|+||+.+++..++.|+|.. +++.
T Consensus 126 df~~p~r~e~~d~te~~dqp~R~~fsllleprslLilkd~aYtd~LHgIs~s~~d~l~~~~sna~ac~s~k~Gd~lvr~t 205 (224)
T KOG3200|consen 126 DFYDPVRQEVNDGTESKDQPLRYLFSLLLEPRSLLILKDDAYTDFLHGISDSPTDCLNQVVSNALACSSRKDGDKLVRQT 205 (224)
T ss_pred ecccccccccCCccccCCCCccceeeeeeccceEEEEcCcHHHHHHhhcccChHHHHHHHhhhhhhccccCCcceeeecc
Confidence 99874332111 1 0 1234679999999999999999999999986 5789
Q ss_pred cEEEEEeccc
Q 025324 139 RISITFRKMD 148 (254)
Q Consensus 139 RISLTFR~~~ 148 (254)
|||||.|.+-
T Consensus 206 RvSLTiR~VP 215 (224)
T KOG3200|consen 206 RVSLTIRLVP 215 (224)
T ss_pred eeEEEEecch
Confidence 9999999763
No 7
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only]
Probab=99.59 E-value=2.3e-16 Score=141.63 Aligned_cols=146 Identities=21% Similarity=0.256 Sum_probs=114.9
Q ss_pred ccCceeecCCCCCCCCCCccCCCCCCCCcHHHHHHHHHHHHcccCCCCCCCCeEEEeecCC--CCCCCCCCCCCC-CCCC
Q 025324 2 QFGCCYNYSADKDGNPPGIIRDEEVDPLPPMFKQMIKRMVRWHILPPTCIPNSCIVNIYDE--GDCIPPHIDHHD-FLRP 78 (254)
Q Consensus 2 ~fG~~Y~Y~~~~~~~~pgi~~~~~~~piP~~L~~Li~rLv~~~ilp~~~~pn~clIN~Y~~--Gd~I~pH~D~~~-f~~p 78 (254)
.||...||..++++ ...+-.||+.-..++.||....++.-..++++|-+ +|.+ |..|.||+|+.| |+..
T Consensus 109 dyGPKvNFkk~Klk-------t~~F~G~P~~~~~v~rrm~~yp~l~gfqp~EqCnL-eYep~kgsaIdpH~DD~WiWGeR 180 (306)
T KOG3959|consen 109 DYGPKVNFKKKKLK-------TDTFVGMPEYADMVLRRMSEYPVLKGFQPFEQCNL-EYEPVKGSAIDPHQDDMWIWGER 180 (306)
T ss_pred ccCCccchhhhhhc-------cCcccCCchHHHHHHHHhhccchhhccCcHHHcCc-ccccccCCccCccccchhhhhhh
Confidence 48999999999754 35678999999999999987655443457899988 7876 568999999999 9999
Q ss_pred EEEEcCCCceeEEeeccccc------------CCCCCC--------------CccEEEEcCCCcEEEeCCCcccccceec
Q 025324 79 FCTVSFLTECNILFGSSLKI------------VGPGEF--------------SGPISIPLPVGSVLILNGNGADVAKHCV 132 (254)
Q Consensus 79 IvsLSLGs~~~m~Fg~~~~~------------~~~~~~--------------~~~~~l~L~~GSLlVMsG~aR~~w~H~I 132 (254)
++++.+..+.++.+-++.-. +++.-. .-.+.|+||++||+||.|+|||.|+|+|
T Consensus 181 lv~~n~l~d~vl~lc~~e~~~sg~~nL~~~~s~~~e~l~~~li~~s~~~l~~~~~~~ipmP~rSLlvl~g~aRyqwkH~v 260 (306)
T KOG3959|consen 181 LVRSNRLFDFVLKLCSKECLASGIINLNTNFSESNEFLSINLINGSVMTLNKSFLCYIPMPHRSLLVLAGEARYQWKHGV 260 (306)
T ss_pred eeehhhccHHHHHhhhhhhhccceeeeccCccccccccchhhcccchhhhccceEEEeecCcceeEEeechhHhhHHHHH
Confidence 99999888877776533110 011000 1135799999999999999999999999
Q ss_pred CC--CCCCcEEEEEecccCCCCCCC
Q 025324 133 PA--VPTKRISITFRKMDDSKLPYK 155 (254)
Q Consensus 133 p~--~r~~RISLTFR~~~~~~~p~~ 155 (254)
-. ++++||++|||...+...+|+
T Consensus 261 lr~hi~~RRvcvt~RE~~~~f~~Gg 285 (306)
T KOG3959|consen 261 LRHHIRGRRVCVTMREAAKDFAEGG 285 (306)
T ss_pred HHHhhhhceeeeeHHhhhHhhccch
Confidence 98 999999999999998766665
No 8
>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification]
Probab=98.61 E-value=4e-08 Score=92.99 Aligned_cols=121 Identities=22% Similarity=0.364 Sum_probs=87.1
Q ss_pred ccCceeecCCCCCCCCCCccCCCCCCCCcHHHHHHHHHHHH-cccCCCCCCCCeEEEeecCCCCCCCCCCCCCC--CCCC
Q 025324 2 QFGCCYNYSADKDGNPPGIIRDEEVDPLPPMFKQMIKRMVR-WHILPPTCIPNSCIVNIYDEGDCIPPHIDHHD--FLRP 78 (254)
Q Consensus 2 ~fG~~Y~Y~~~~~~~~pgi~~~~~~~piP~~L~~Li~rLv~-~~ilp~~~~pn~clIN~Y~~Gd~I~pH~D~~~--f~~p 78 (254)
..|+.|||++.++ + +.-......+|++|..+...-+. ..-+.+...+..+|+|+|..++.++-|.|..+ +..|
T Consensus 169 T~G~~~dw~s~~~---~-~~~s~k~~~~~~~ll~~~~~~~~~a~~~~~~~~~~Gli~nYlsi~~tl~ih~d~reld~~~p 244 (378)
T KOG2731|consen 169 TLGNQYDWSSKDI---F-IFLSKKHYNIKPSLLGLLREKVKAAKGFSHIVIRPGLIKNYLSIDDTLGIHLDCRELDLSKP 244 (378)
T ss_pred ccccccCCccccc---c-ccccccCCCCChHHhhhhhhhhhhhcCccceeccCcceeeecccCcEEEEEeehhhcccCCc
Confidence 5799999999941 2 22233445677776655443232 21122223445579999999999999999754 6778
Q ss_pred EEEEcCCCceeEEeecccccCCCCCCCccEEEEcCCCcEEEeCCCcccccceecC
Q 025324 79 FCTVSFLTECNILFGSSLKIVGPGEFSGPISIPLPVGSVLILNGNGADVAKHCVP 133 (254)
Q Consensus 79 IvsLSLGs~~~m~Fg~~~~~~~~~~~~~~~~l~L~~GSLlVMsG~aR~~w~H~Ip 133 (254)
+++.|||.+|.+..+.. ..++ .+..+.|..|++++|.|.+|. ..||||
T Consensus 245 f~s~s~g~~ai~lLg~m----~l~e--~p~p~~lrsGdv~im~Gfsrl-v~haIp 292 (378)
T KOG2731|consen 245 FYSPSLGQGAILLLGMM----CLGE--NPDPMTLRSGDVVIMDGFSRL-VEHAIP 292 (378)
T ss_pred cccccccccceeeeccc----ccCC--CCCccccccCceEeecchHHH-Hhhccc
Confidence 99999999999999875 2222 367899999999999999885 569999
No 9
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=97.80 E-value=1.2e-05 Score=61.52 Aligned_cols=83 Identities=23% Similarity=0.256 Sum_probs=48.4
Q ss_pred CCeEEEeecC---CCCCCCCCCCCCCCCCCEEEEcCC-CceeEEeecccccCCCCCCCccE-------EEEcCCCc-EEE
Q 025324 52 PNSCIVNIYD---EGDCIPPHIDHHDFLRPFCTVSFL-TECNILFGSSLKIVGPGEFSGPI-------SIPLPVGS-VLI 119 (254)
Q Consensus 52 pn~clIN~Y~---~Gd~I~pH~D~~~f~~pIvsLSLG-s~~~m~Fg~~~~~~~~~~~~~~~-------~l~L~~GS-LlV 119 (254)
++++.+|.|. .+.++++|.|.. ..+++|-+. ....+.|.... +-+ .+.+.-|| |.+
T Consensus 1 ~~~~~~~~Y~~~~~~~~~~~H~D~~---~~~~Til~~~~~~gL~~~~~~---------~~~~v~~~~~~~~v~~G~~l~~ 68 (98)
T PF03171_consen 1 PSQLRLNRYPPPENGVGIGPHTDDE---DGLLTILFQDEVGGLQVRDDG---------EWVDVPPPPGGFIVNFGDALEI 68 (98)
T ss_dssp --EEEEEEE-SCCGCEEEEEEEES-----SSEEEEEETSTS-EEEEETT---------EEEE----TTCEEEEEBHHHHH
T ss_pred CCEEEEEECCCcccCCceeCCCcCC---CCeEEEEecccchheeccccc---------cccCccCccceeeeeceeeeec
Confidence 3789999999 667899999985 455555554 55556665431 122 44455555 445
Q ss_pred eCCCcccccceecCCC-CCCcEEEEEec
Q 025324 120 LNGNGADVAKHCVPAV-PTKRISITFRK 146 (254)
Q Consensus 120 MsG~aR~~w~H~Ip~~-r~~RISLTFR~ 146 (254)
|++..+..+.|+|.+. .+.|+|+||+.
T Consensus 69 ~t~g~~~~~~HrV~~~~~~~R~s~~~f~ 96 (98)
T PF03171_consen 69 LTNGRYPATLHRVVPPTEGERYSLTFFL 96 (98)
T ss_dssp HTTTSS----EEEE--STS-EEEEEEEE
T ss_pred ccCCccCCceeeeEcCCCCCEEEEEEEE
Confidence 5566888999999996 59999999974
No 10
>PF12933 FTO_NTD: FTO catalytic domain; InterPro: IPR024367 Alpha-ketoglutarate-dependent dioxygenase FTO, also known as Fat mass and obesity-associated protein, is a nucleus protein which belongs to the FTO family. This enzyme is a dioxygenase that repairs alkylated DNA and RNA by oxidative demethylation []. FTO activity is highest towards single-stranded RNA containing 3-methyluracil, followed by single-stranded DNA containing 3-methylthymine. FTO has low demethylase activity towards single-stranded DNA containing 1-methyladenine or 3-methylcytosine []. FTO has no activity towards 1-methylguanine. It has no detectable activity towards double-stranded DNA. FTO requires molecular oxygen, alpha-ketoglutarate and iron. FTO contributes to the regulation of the global metabolic rate, energy expenditure and energy homeostasis. It contributes to the regulation of body size and body fat accumulation as well []. This domain is the catalytic AlkB-like domain from the FTO protein []. This domain catalyses a demethylase activity with a preference for 3-methylthymidine.; PDB: 3LFM_A.
Probab=96.97 E-value=0.0009 Score=61.01 Aligned_cols=95 Identities=21% Similarity=0.235 Sum_probs=51.0
Q ss_pred CCCCCeEEEeecCC--C--------------C-CCCCCCCCCCCC-CCE--EEEcCCC--ceeEEeecccccCCCCCCCc
Q 025324 49 TCIPNSCIVNIYDE--G--------------D-CIPPHIDHHDFL-RPF--CTVSFLT--ECNILFGSSLKIVGPGEFSG 106 (254)
Q Consensus 49 ~~~pn~clIN~Y~~--G--------------d-~I~pH~D~~~f~-~pI--vsLSLGs--~~~m~Fg~~~~~~~~~~~~~ 106 (254)
.+.+|.++||+++| . . .++||.|...-. .+| ++-|... ......+-+ . ..++ ..
T Consensus 135 ~~~fNvTLlN~MdP~~~~~~~LK~Ep~fgmGKmaVsWH~DenL~~~StVAVY~~s~~~~~~~~W~VgLk-a--~D~~-tP 210 (253)
T PF12933_consen 135 SCEFNVTLLNYMDPSSQAMPDLKEEPYFGMGKMAVSWHHDENLVERSTVAVYSYSCEEPEPADWHVGLK-A--WDIE-TP 210 (253)
T ss_dssp -----EEEEEEE-S--S-SSS--B-SSS---BEEEEEE---SB-TT--EEEEEEE-----TTSEEEEEE-T--T--S-S-
T ss_pred ceeeehhhhhccCcccccccccccccccCCcceeeeeccccccccccceEEEEecCCCCCCCceEEEEe-e--cCCC-CC
Confidence 35789999999998 1 1 278999975432 244 4555521 222333222 1 2222 23
Q ss_pred cEEEEcCCCcEEEeCCCcccccceecCCCCCCcEEEEEecc
Q 025324 107 PISIPLPVGSVLILNGNGADVAKHCVPAVPTKRISITFRKM 147 (254)
Q Consensus 107 ~~~l~L~~GSLlVMsG~aR~~w~H~Ip~~r~~RISLTFR~~ 147 (254)
.+.++|+.||++.|-++-...++|||-.-...|+|=|-|..
T Consensus 211 ~L~vPL~sgd~Y~Mldd~N~tHqH~VlaG~~~RfSSTHRVA 251 (253)
T PF12933_consen 211 GLAVPLRSGDCYYMLDDFNATHQHCVLAGSSARFSSTHRVA 251 (253)
T ss_dssp EEEEEE-TT-EEEE-TTHHHHEEEEEE--SS-EEEEEEE-B
T ss_pred eeEEeccCCCeEEEccccchhhHHHHhcCCCccccccceee
Confidence 58999999999999999999999999998888999999964
No 11
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=96.50 E-value=0.0023 Score=48.88 Aligned_cols=83 Identities=22% Similarity=0.223 Sum_probs=50.4
Q ss_pred EEEeecCCCCCCCCCCCCCCCCC----CEEEEcCC----CceeEEeecccccCCCCCCCccEEEE-----cCCCcEEEeC
Q 025324 55 CIVNIYDEGDCIPPHIDHHDFLR----PFCTVSFL----TECNILFGSSLKIVGPGEFSGPISIP-----LPVGSVLILN 121 (254)
Q Consensus 55 clIN~Y~~Gd~I~pH~D~~~f~~----pIvsLSLG----s~~~m~Fg~~~~~~~~~~~~~~~~l~-----L~~GSLlVMs 121 (254)
|-|+.|.+|+.+.||.|...... .|.-|+-- ....+.|..... .. .....+. ...|+++++.
T Consensus 1 ~~~~~y~~G~~~~~H~D~~~~~~~~~t~llyL~~~~~~~~GG~l~~~~~~~---~~--~~~~~~~~~~~~p~~g~~v~F~ 75 (100)
T PF13640_consen 1 MQLNRYPPGGFFGPHTDNSYDPHRRVTLLLYLNDPEWEFEGGELEFYPSKD---SD--DVSREVEDFDIVPKPGRLVIFP 75 (100)
T ss_dssp -EEEEEETTEEEEEEESSSCCCSEEEEEEEESS-CS-HCEE--EEETTTS----TS--STCEEEGGGSEE-BTTEEEEEE
T ss_pred CEEEEECcCCEEeeeECCCCCCcceEEEEEEECCCCcccCCCEEEEecccc---CC--CcceEEEeccccCCCCEEEEEe
Confidence 46899999999999999843222 22223311 123445543210 00 1123333 8999999999
Q ss_pred CCcccccceecCCC--CCCcEEEEEe
Q 025324 122 GNGADVAKHCVPAV--PTKRISITFR 145 (254)
Q Consensus 122 G~aR~~w~H~Ip~~--r~~RISLTFR 145 (254)
+ ....|+|.++ .++|++|++-
T Consensus 76 ~---~~~~H~v~~v~~~~~R~~l~~~ 98 (100)
T PF13640_consen 76 S---DNSLHGVTPVGEGGRRYSLTFW 98 (100)
T ss_dssp S---CTCEEEEEEE-EESEEEEEEEE
T ss_pred C---CCCeecCcccCCCCCEEEEEEE
Confidence 9 4456999986 7889999874
No 12
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=95.63 E-value=0.11 Score=44.80 Aligned_cols=72 Identities=25% Similarity=0.370 Sum_probs=48.1
Q ss_pred CCCCCCCCCCCC---CCEEEEcCC--CceeEEeecccccCCCCCCCccEEEEcCCCcEEEeCCCcccccceecCCCC---
Q 025324 65 CIPPHIDHHDFL---RPFCTVSFL--TECNILFGSSLKIVGPGEFSGPISIPLPVGSVLILNGNGADVAKHCVPAVP--- 136 (254)
Q Consensus 65 ~I~pH~D~~~f~---~pIvsLSLG--s~~~m~Fg~~~~~~~~~~~~~~~~l~L~~GSLlVMsG~aR~~w~H~Ip~~r--- 136 (254)
....|.|.+.+. ..++++-.| ....+.+-.. .+. -..+.|.+.+||+|++-|. ...|++.++.
T Consensus 86 ~t~~HrD~~~~~~~~~~~~t~~~gd~~~g~l~lp~~----~~~--~~g~~~~~~~GtVl~~~~~---~~~Hgvtpv~~~~ 156 (171)
T PF12851_consen 86 CTHSHRDTHNMPNGYDVLCTLGRGDYDGGRLELPGL----DPN--ILGVAFAYQPGTVLIFCAK---RELHGVTPVESPN 156 (171)
T ss_pred CccceecCCCCCCCeEEEEecCCccccCceEecccc----ccc--cCCEEEecCCCcEEEEccc---ceeeecCcccCCC
Confidence 578999976543 245555443 2333333220 000 1368999999999999877 5679999976
Q ss_pred ---CCcEEEEEe
Q 025324 137 ---TKRISITFR 145 (254)
Q Consensus 137 ---~~RISLTFR 145 (254)
+.||||.|=
T Consensus 157 ~~~~~R~slvfy 168 (171)
T PF12851_consen 157 RNHGTRISLVFY 168 (171)
T ss_pred CCCCeEEEEEEE
Confidence 899999874
No 13
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=95.49 E-value=0.089 Score=47.55 Aligned_cols=84 Identities=19% Similarity=0.270 Sum_probs=53.0
Q ss_pred eEEEeecCCCCCCCCCCCCCCCC---C--CEE-EEcCCCceeEEeecccccCCCCC-----CCccEEEEcCCCcEEEeCC
Q 025324 54 SCIVNIYDEGDCIPPHIDHHDFL---R--PFC-TVSFLTECNILFGSSLKIVGPGE-----FSGPISIPLPVGSVLILNG 122 (254)
Q Consensus 54 ~clIN~Y~~Gd~I~pH~D~~~f~---~--pIv-sLSLGs~~~m~Fg~~~~~~~~~~-----~~~~~~l~L~~GSLlVMsG 122 (254)
...++.|.+|+.-++|+|..... . .+- -|| +++-+...... +-|+ ..+...|.++.|+++++..
T Consensus 81 ~~~f~rY~~G~~y~~H~D~~~~~~~~~~~~~rs~lS----~~lyLnd~~~y-eGGEl~~~~~~g~~~Vkp~aG~~vlfps 155 (226)
T PRK05467 81 PPLFNRYEGGMSYGFHVDNAVRSLPGTGGRVRTDLS----ATLFLSDPDDY-DGGELVIEDTYGEHRVKLPAGDLVLYPS 155 (226)
T ss_pred cceEEEECCCCccCccccCCcccCCCCCcceeEEEE----EEEEeCCCCCC-cCCceEEecCCCcEEEecCCCeEEEECC
Confidence 56789999999999999985321 1 111 111 11111111000 0011 1134689999999999997
Q ss_pred CcccccceecCC-CCCCcEEEEEec
Q 025324 123 NGADVAKHCVPA-VPTKRISITFRK 146 (254)
Q Consensus 123 ~aR~~w~H~Ip~-~r~~RISLTFR~ 146 (254)
. ..|++.+ .++.|+++++.-
T Consensus 156 ~----~lH~v~pVt~G~R~~~~~Wi 176 (226)
T PRK05467 156 T----SLHRVTPVTRGVRVASFFWI 176 (226)
T ss_pred C----CceeeeeccCccEEEEEecH
Confidence 5 4499999 789999999863
No 14
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function.
Probab=94.55 E-value=0.21 Score=43.40 Aligned_cols=107 Identities=21% Similarity=0.232 Sum_probs=61.9
Q ss_pred CCcHHHHHHHHHHHHcccCCCCCCCCeEEEeecCCCCCCCCCCCC--CCCCC--CEEEEcCC----CceeEEeecccccC
Q 025324 28 PLPPMFKQMIKRMVRWHILPPTCIPNSCIVNIYDEGDCIPPHIDH--HDFLR--PFCTVSFL----TECNILFGSSLKIV 99 (254)
Q Consensus 28 piP~~L~~Li~rLv~~~ilp~~~~pn~clIN~Y~~Gd~I~pH~D~--~~f~~--pIvsLSLG----s~~~m~Fg~~~~~~ 99 (254)
.+|+.+.+++++-.+.|-. +| ..+|..|.+||+...|.|. +.+.+ .|+-||== ...+|.+...
T Consensus 42 ~yP~~~~~fl~~ch~aGQ~----rp-tplllrY~~gdyn~LHqdlyGe~vFPlQvv~lLs~Pg~DftGGEFVltEQ---- 112 (173)
T PF09859_consen 42 RYPATLAEFLARCHAAGQT----RP-TPLLLRYGPGDYNCLHQDLYGEHVFPLQVVILLSEPGEDFTGGEFVLTEQ---- 112 (173)
T ss_pred CCCccHHHHHHHHHhccCC----CC-chhhheeCCCCccccccCCCCCcccCeEEEEEcCCCCCcccCceEEEEEe----
Confidence 4555555555554333322 33 3467799999999999995 33443 33333310 0111222211
Q ss_pred CCCCCCccEEEEcCCCcEEEeC----------CCcccccceecCCC-CCCcEEEE
Q 025324 100 GPGEFSGPISIPLPVGSVLILN----------GNGADVAKHCVPAV-PTKRISIT 143 (254)
Q Consensus 100 ~~~~~~~~~~l~L~~GSLlVMs----------G~aR~~w~H~Ip~~-r~~RISLT 143 (254)
.+-..+...-+.|..||.+|+. |..|-.-+|+|..+ .++|..|.
T Consensus 113 rPR~QSR~~V~~L~qGda~if~t~~RPv~G~rG~yRv~~RHgVS~vrsG~R~tLg 167 (173)
T PF09859_consen 113 RPRMQSRAMVLPLRQGDALIFATNHRPVRGARGYYRVNMRHGVSRVRSGERHTLG 167 (173)
T ss_pred cCCccCccccCCcCCCCEEEEecCCCCcCCCccceecccccccccccccceEEEE
Confidence 1111123567999999999996 45555668999984 56777664
No 15
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=94.13 E-value=0.75 Score=38.66 Aligned_cols=107 Identities=17% Similarity=0.194 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHcccCC--CCCCCCeEEEeecCCCCCCCCCCCCCCCC---CCEEEEcCC-Cc----eeEEeecccccCC
Q 025324 31 PMFKQMIKRMVRWHILP--PTCIPNSCIVNIYDEGDCIPPHIDHHDFL---RPFCTVSFL-TE----CNILFGSSLKIVG 100 (254)
Q Consensus 31 ~~L~~Li~rLv~~~ilp--~~~~pn~clIN~Y~~Gd~I~pH~D~~~f~---~pIvsLSLG-s~----~~m~Fg~~~~~~~ 100 (254)
+....|.+++...-.++ .....+.+.|..|.+|+...+|.|..... ..++++-+- ++ ..+.|-..
T Consensus 59 ~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Y~~g~~~~~H~D~~~~~~~~~r~~T~~~yLn~~~~GG~~~f~~~----- 133 (178)
T smart00702 59 LVIERIRQRLADFLGLLRGLPLSAEDAQVARYGPGGHYGPHVDNFEDDENGDRIATFLLYLNDVEEGGELVFPGL----- 133 (178)
T ss_pred HHHHHHHHHHHHHHCCCchhhccCcceEEEEECCCCcccCcCCCCCCCCCCCeEEEEEEEeccCCcCceEEecCC-----
Confidence 44455555544321121 01245788999999999999999975321 334433210 00 11111110
Q ss_pred CCCCCccEEEEcCCCcEEEeCCCcccccceecCCCC-CCcEEEEEe
Q 025324 101 PGEFSGPISIPLPVGSVLILNGNGADVAKHCVPAVP-TKRISITFR 145 (254)
Q Consensus 101 ~~~~~~~~~l~L~~GSLlVMsG~aR~~w~H~Ip~~r-~~RISLTFR 145 (254)
+......|.-..|+++++...-. ...|++.++. +.|++++.+
T Consensus 134 --~~~~~~~v~P~~G~~v~f~~~~~-~~~H~v~pv~~G~r~~~~~W 176 (178)
T smart00702 134 --GLMVCATVKPKKGDLLFFPSGRG-RSLHGVCPVTRGSRWAITGW 176 (178)
T ss_pred --CCccceEEeCCCCcEEEEeCCCC-CccccCCcceeCCEEEEEEE
Confidence 00124578899999999985422 3559999954 899999865
No 16
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=93.14 E-value=0.24 Score=44.17 Aligned_cols=82 Identities=22% Similarity=0.404 Sum_probs=52.5
Q ss_pred EEeecCCCCCCCCCCCCCCCC-CCEE--EEcCCCceeEEeecccccCCCCCCC----------ccEEEEcCCCcEEEeCC
Q 025324 56 IVNIYDEGDCIPPHIDHHDFL-RPFC--TVSFLTECNILFGSSLKIVGPGEFS----------GPISIPLPVGSVLILNG 122 (254)
Q Consensus 56 lIN~Y~~Gd~I~pH~D~~~f~-~pIv--sLSLGs~~~m~Fg~~~~~~~~~~~~----------~~~~l~L~~GSLlVMsG 122 (254)
+-|.|..|+..++|+|...-. .|.. .|+---.|.+-+. .+.+++ +...|.|+-|||++..+
T Consensus 85 ~Fn~Y~eg~~f~fHvDgavr~~hp~~~~~lrtdls~tlfl~------DPedYdGGeLVv~dtYg~h~VklPAGdLVlypS 158 (229)
T COG3128 85 LFNRYQEGDFFGFHVDGAVRSIHPGSGFRLRTDLSCTLFLS------DPEDYDGGELVVNDTYGNHRVKLPAGDLVLYPS 158 (229)
T ss_pred hhhhccCCCcccccccCcccccCCCCCceeEeeeeeeeecC------CccccCCceEEEeccccceEEeccCCCEEEccc
Confidence 568999999999999974211 1110 1111111222222 122222 24579999999999998
Q ss_pred CcccccceecCC-CCCCcEEEEEecc
Q 025324 123 NGADVAKHCVPA-VPTKRISITFRKM 147 (254)
Q Consensus 123 ~aR~~w~H~Ip~-~r~~RISLTFR~~ 147 (254)
.+- |+|.+ .++.|+-.-|+..
T Consensus 159 tSl----H~VtPVTRg~R~asffW~q 180 (229)
T COG3128 159 TSL----HEVTPVTRGERFASFFWIQ 180 (229)
T ss_pred ccc----eeccccccCceEEEeeehH
Confidence 865 89988 7899998887643
No 17
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=91.68 E-value=0.39 Score=37.20 Aligned_cols=86 Identities=22% Similarity=0.243 Sum_probs=43.3
Q ss_pred EEEeecCCCCCCCCCCCCCCCCCCEEEEcCCCcee-EEeecccc-c--C-------CCCCCCccEEEEcCCCcEEEeCCC
Q 025324 55 CIVNIYDEGDCIPPHIDHHDFLRPFCTVSFLTECN-ILFGSSLK-I--V-------GPGEFSGPISIPLPVGSVLILNGN 123 (254)
Q Consensus 55 clIN~Y~~Gd~I~pH~D~~~f~~pIvsLSLGs~~~-m~Fg~~~~-~--~-------~~~~~~~~~~l~L~~GSLlVMsG~ 123 (254)
|=+|.|+.|+...+|.-...+...|+=|.+...+- +.|..... . . ..........+..+.|+|+|+.+-
T Consensus 2 ~W~ni~~~g~~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs~ 81 (101)
T PF13759_consen 2 SWANIYRKGGYNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPSW 81 (101)
T ss_dssp EEEEEE-TT--EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEETT
T ss_pred eeEEEeCCCCccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeCCC
Confidence 44789999999888866544444555555555442 45543210 0 0 000112346789999999999976
Q ss_pred cccccceecCC--CCCCcEEEEE
Q 025324 124 GADVAKHCVPA--VPTKRISITF 144 (254)
Q Consensus 124 aR~~w~H~Ip~--~r~~RISLTF 144 (254)
.. |++.+ ..+.||||-|
T Consensus 82 l~----H~v~p~~~~~~Risisf 100 (101)
T PF13759_consen 82 LW----HGVPPNNSDEERISISF 100 (101)
T ss_dssp SE----EEE----SSS-EEEEEE
T ss_pred CE----EeccCcCCCCCEEEEEc
Confidence 43 99998 4568999987
No 18
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=90.13 E-value=5.4 Score=35.40 Aligned_cols=90 Identities=22% Similarity=0.286 Sum_probs=56.2
Q ss_pred CCCeEEEeecCCCCCCCCCCCCCCCCCCEEEEcCCCc-eeEEeecccc---cC-------CCCCCCccEEEEcCCCcEEE
Q 025324 51 IPNSCIVNIYDEGDCIPPHIDHHDFLRPFCTVSFLTE-CNILFGSSLK---IV-------GPGEFSGPISIPLPVGSVLI 119 (254)
Q Consensus 51 ~pn~clIN~Y~~Gd~I~pH~D~~~f~~pIvsLSLGs~-~~m~Fg~~~~---~~-------~~~~~~~~~~l~L~~GSLlV 119 (254)
....+=+|.+.+|+....|.-...+...++=|++-.. ..+.|..... .. .+.....-+.+.-+.|+|++
T Consensus 94 ~i~~~W~ni~~~Gg~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvl 173 (201)
T TIGR02466 94 RIQKAWVNILPQGGTHSPHLHPGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLL 173 (201)
T ss_pred EEeeEeEEEcCCCCccCceECCCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeEEE
Confidence 4567778999999999999775544444444443322 2344542110 00 00011123457779999999
Q ss_pred eCCCcccccceecCC--CCCCcEEEEE
Q 025324 120 LNGNGADVAKHCVPA--VPTKRISITF 144 (254)
Q Consensus 120 MsG~aR~~w~H~Ip~--~r~~RISLTF 144 (254)
+.+-.+ |++.+ ..+.||||.|
T Consensus 174 FPS~L~----H~v~p~~~~~~RISiSF 196 (201)
T TIGR02466 174 FESWLR----HEVPPNESEEERISVSF 196 (201)
T ss_pred ECCCCc----eecCCCCCCCCEEEEEE
Confidence 998754 99999 4568999988
No 19
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=82.82 E-value=15 Score=33.99 Aligned_cols=39 Identities=13% Similarity=0.226 Sum_probs=31.2
Q ss_pred cEEEEcCCCcEEEeCCCcccccceecCCC---CCCcEEEEEecccC
Q 025324 107 PISIPLPVGSVLILNGNGADVAKHCVPAV---PTKRISITFRKMDD 149 (254)
Q Consensus 107 ~~~l~L~~GSLlVMsG~aR~~w~H~Ip~~---r~~RISLTFR~~~~ 149 (254)
.+.+.|+.||+++|.+.+- |+--+. ..+|+++++|.+.+
T Consensus 208 ~v~~~lkaGd~~~f~~~t~----HgS~~N~S~~~~R~~~~~ry~~~ 249 (288)
T TIGR01762 208 AVPMQMKAGQFIIFWSTLM----HASYPNSGESQMRMGFASRYVPS 249 (288)
T ss_pred eeeeeeCCceEEEECCCce----ecCCCCCCCCceEEEEEEEEcCC
Confidence 4688999999999998754 887662 24699999998854
No 20
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=75.92 E-value=7.8 Score=36.27 Aligned_cols=84 Identities=18% Similarity=0.122 Sum_probs=45.3
Q ss_pred CeEEEeecC-CCC--CCCCCCCCCCCCCCEEEEcCCCceeEEeeccccc----CCC------CCCCccEEEEcCCCcEEE
Q 025324 53 NSCIVNIYD-EGD--CIPPHIDHHDFLRPFCTVSFLTECNILFGSSLKI----VGP------GEFSGPISIPLPVGSVLI 119 (254)
Q Consensus 53 n~clIN~Y~-~Gd--~I~pH~D~~~f~~pIvsLSLGs~~~m~Fg~~~~~----~~~------~~~~~~~~l~L~~GSLlV 119 (254)
..|.+|.|- ++. ++++|.|.. -+..|=+.+...+.+...... ... ........+.|++||+|.
T Consensus 112 ~~~~~n~Y~tp~g~~g~~~H~D~~----dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LY 187 (319)
T PF08007_consen 112 CPVGANAYLTPPGSQGFGPHYDDH----DVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLY 187 (319)
T ss_dssp S-EEEEEEEETSSBEESECEE-SS----EEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEE
T ss_pred cccceEEEecCCCCCCccCEECCc----ccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEE
Confidence 568999994 444 899999985 344455556666666552110 000 001224679999999999
Q ss_pred eCCCcccccceecCCCCCCcEEEEEe
Q 025324 120 LNGNGADVAKHCVPAVPTKRISITFR 145 (254)
Q Consensus 120 MsG~aR~~w~H~Ip~~r~~RISLTFR 145 (254)
|.-. |-|...... .-++|||-
T Consensus 188 lPrG----~~H~~~~~~-~S~hltv~ 208 (319)
T PF08007_consen 188 LPRG----WWHQAVTTD-PSLHLTVG 208 (319)
T ss_dssp E-TT-----EEEEEESS--EEEEEEE
T ss_pred ECCC----ccCCCCCCC-CceEEEEe
Confidence 9855 335555444 66777766
No 21
>COG3826 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.26 E-value=41 Score=30.26 Aligned_cols=103 Identities=19% Similarity=0.211 Sum_probs=58.0
Q ss_pred CCCcHHHHHHHHHHHHcccCCCCCCCCeEEEeecCCCCCCCCCCCC--CCCCCCEEEEcCCCceeEEeeccc---ccCCC
Q 025324 27 DPLPPMFKQMIKRMVRWHILPPTCIPNSCIVNIYDEGDCIPPHIDH--HDFLRPFCTVSFLTECNILFGSSL---KIVGP 101 (254)
Q Consensus 27 ~piP~~L~~Li~rLv~~~ilp~~~~pn~clIN~Y~~Gd~I~pH~D~--~~f~~pIvsLSLGs~~~m~Fg~~~---~~~~~ 101 (254)
..+|..+.+.+++.-..|-+ .|.- ++-.|.+||+-..|.|. +-..+--+.| |.++-.-.|.... .+..+
T Consensus 103 ~r~P~tlad~L~~CHaAGQ~----RpTp-LlLqYgpgD~NcLHQDLYGelvFPLQvai-lLsePg~DfTGGEF~lvEQRP 176 (236)
T COG3826 103 ARYPATLADFLARCHAAGQV----RPTP-LLLQYGPGDYNCLHQDLYGELVFPLQVAI-LLSEPGTDFTGGEFVLVEQRP 176 (236)
T ss_pred CCCchhHHHHHHHHHhccCc----cCCc-eeEEecCCccchhhhhhhhceeeeeeEEE-eccCCCCcccCceEEEEeccc
Confidence 46777777777775555543 4444 55589999999999994 2222211222 2222222221110 00011
Q ss_pred CCCCccEEEEcCCCcEEEeC----------CCcccccceecCCC
Q 025324 102 GEFSGPISIPLPVGSVLILN----------GNGADVAKHCVPAV 135 (254)
Q Consensus 102 ~~~~~~~~l~L~~GSLlVMs----------G~aR~~w~H~Ip~~ 135 (254)
-..+.+..++|+.|+-+|+. |..+-...|+|..+
T Consensus 177 R~QSr~~vvpLrqG~g~vFavr~RPv~gtrG~~r~~lRHGvS~l 220 (236)
T COG3826 177 RMQSRPTVVPLRQGDGVVFAVRDRPVQGTRGWYRVPLRHGVSRL 220 (236)
T ss_pred ccccCCceeeccCCceEEEEeecCcccCccCccccchhcchhhh
Confidence 11123457999999999985 55555667888764
No 22
>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification]
Probab=63.59 E-value=3.3 Score=40.08 Aligned_cols=44 Identities=32% Similarity=0.629 Sum_probs=38.0
Q ss_pred CCCeEEEeecCCCCCCCCCCCCCCC------CCCEEEEcCCCceeEEeecc
Q 025324 51 IPNSCIVNIYDEGDCIPPHIDHHDF------LRPFCTVSFLTECNILFGSS 95 (254)
Q Consensus 51 ~pn~clIN~Y~~Gd~I~pH~D~~~f------~~pIvsLSLGs~~~m~Fg~~ 95 (254)
.|+-|++|+|.+-..++.|.|..++ +=||+.+|.|. ..|.++..
T Consensus 313 lp~i~~~~f~~~~g~~~~~Q~~~ey~ks~r~nl~Irqv~~~d-~~f~~~~~ 362 (378)
T KOG2731|consen 313 LPDICIVNFYSETGSLGLHQDKAEYLKSSRVNLPIRQVSIGD-AEFLYGDQ 362 (378)
T ss_pred CcccccccccCCCcccccchhHHHHHHhhhcCceeEEeccCc-cccccCch
Confidence 7899999999999999999996443 23999999988 89999876
No 23
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=58.83 E-value=12 Score=31.63 Aligned_cols=81 Identities=16% Similarity=0.164 Sum_probs=50.7
Q ss_pred CCCeEEEeecCCCCCCCCCCCCCCCC-CCEEEEcC-CCceeEEeecccccCCCCCCCccEEEEcCCCcEEEeCCCccccc
Q 025324 51 IPNSCIVNIYDEGDCIPPHIDHHDFL-RPFCTVSF-LTECNILFGSSLKIVGPGEFSGPISIPLPVGSVLILNGNGADVA 128 (254)
Q Consensus 51 ~pn~clIN~Y~~Gd~I~pH~D~~~f~-~pIvsLSL-Gs~~~m~Fg~~~~~~~~~~~~~~~~l~L~~GSLlVMsG~aR~~w 128 (254)
..-.|.+....+|..|.+|.|...+. +.-..|.. -..|.|..+. .....+.|.++++... +
T Consensus 78 ~~~~~~~s~l~pg~~I~pH~d~~~~~lR~Hl~L~~p~~~~~~~v~~-------------~~~~w~~G~~~~fD~s----~ 140 (163)
T PF05118_consen 78 PLGRVRFSRLPPGTHIKPHRDPTNLRLRLHLPLIVPNPGCYIRVGG-------------ETRHWREGECWVFDDS----F 140 (163)
T ss_dssp TCEEEEEEEEECTEEEEEE-SS-TTEEEEEEEEC--STTEEEEETT-------------EEEB--CTEEEEE-TT----S
T ss_pred chhhEEEEEECCCCEECCeeCCCCcceEEEEEEEcCCCCeEEEECC-------------eEEEeccCcEEEEeCC----E
Confidence 45668888999999999999975432 32233333 2566666533 2566899999999865 5
Q ss_pred ceecCC-CCCCcEEEEEeccc
Q 025324 129 KHCVPA-VPTKRISITFRKMD 148 (254)
Q Consensus 129 ~H~Ip~-~r~~RISLTFR~~~ 148 (254)
.|.+-. ....||.|.+--..
T Consensus 141 ~H~~~N~~~~~Rv~L~vD~~h 161 (163)
T PF05118_consen 141 EHEVWNNGDEDRVVLIVDFWH 161 (163)
T ss_dssp -EEEEESSSS-EEEEEEEEE-
T ss_pred EEEEEeCCCCCEEEEEEEeec
Confidence 577776 66789999986654
No 24
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=54.19 E-value=73 Score=31.25 Aligned_cols=106 Identities=19% Similarity=0.270 Sum_probs=62.3
Q ss_pred CCCcHHHHHHHHHHHHcccCCCCCCCCeEEEeecCCCCCCCCCCCCCCCCCCEEEEcCCCceeEEeecccc---------
Q 025324 27 DPLPPMFKQMIKRMVRWHILPPTCIPNSCIVNIYDEGDCIPPHIDHHDFLRPFCTVSFLTECNILFGSSLK--------- 97 (254)
Q Consensus 27 ~piP~~L~~Li~rLv~~~ilp~~~~pn~clIN~Y~~Gd~I~pH~D~~~f~~pIvsLSLGs~~~m~Fg~~~~--------- 97 (254)
+.|-+-+..+++. .+.+| .+..|.++|-+-.+|++.++|.|.=+ |..|=.-+.+....+....
T Consensus 97 d~w~p~v~~l~~~---FrflP-~wr~ddiMIS~a~~GGgvg~H~D~YD----VfliQg~G~RRW~v~~~~~~~~~~~~~d 168 (383)
T COG2850 97 DHWHPEVAALMEP---FRFLP-DWRIDDIMISFAAPGGGVGPHFDQYD----VFLIQGQGRRRWRVGKKCNMSTLCPHPD 168 (383)
T ss_pred hhcCHHHHHHHHH---hccCc-cccccceEEEEecCCCccCccccchh----eeEEeecccceeecCCcccccCcCCCcc
Confidence 4455555555554 35566 57789999986678899999999622 2222222333333332210
Q ss_pred --cCCCCCCCccEEEEcCCCcEEEeCCCcccccceecCCCCCCcEEEEEe
Q 025324 98 --IVGPGEFSGPISIPLPVGSVLILNGNGADVAKHCVPAVPTKRISITFR 145 (254)
Q Consensus 98 --~~~~~~~~~~~~l~L~~GSLlVMsG~aR~~w~H~Ip~~r~~RISLTFR 145 (254)
...+. .-.....|++||+|.+... .|.|+|+-...--.|+-||
T Consensus 169 ~~~~~~f--~~~~d~vlepGDiLYiPp~---~~H~gvae~dc~tySvG~r 213 (383)
T COG2850 169 LLILAPF--EPDIDEVLEPGDILYIPPG---FPHYGVAEDDCMTYSVGFR 213 (383)
T ss_pred hhhcCCC--CchhhhhcCCCceeecCCC---CCcCCcccccccceeeecc
Confidence 00111 1235688999999998754 4567887644445666666
No 25
>PLN02904 oxidoreductase
Probab=49.30 E-value=44 Score=31.90 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=32.8
Q ss_pred cEEEEcCCCcEEEeCCCcccccc--------eecCC-CCCCcEEEEEeccc
Q 025324 107 PISIPLPVGSVLILNGNGADVAK--------HCVPA-VPTKRISITFRKMD 148 (254)
Q Consensus 107 ~~~l~L~~GSLlVMsG~aR~~w~--------H~Ip~-~r~~RISLTFR~~~ 148 (254)
=+.|.-.+|+++|.-|++-..|+ |.|.. ....|+|+.|-...
T Consensus 255 Wi~V~p~pgalVVNiGD~Le~~TNG~~kSt~HRVv~~~~~~R~Si~~F~~p 305 (357)
T PLN02904 255 WVCVPYIEGALIVQLGDQVEVMSNGIYKSVVHRVTVNKDYKRLSFASLHSL 305 (357)
T ss_pred EEECCCCCCeEEEEccHHHHHHhCCeeeccCCcccCCCCCCEEEEEEeecC
Confidence 46788899999999999888884 66643 34569999998654
No 26
>PTZ00273 oxidase reductase; Provisional
Probab=49.08 E-value=34 Score=31.86 Aligned_cols=42 Identities=21% Similarity=0.219 Sum_probs=32.6
Q ss_pred cEEEEcCCCcEEEeCCCcccccc--------eecCCCCCCcEEEEEeccc
Q 025324 107 PISIPLPVGSVLILNGNGADVAK--------HCVPAVPTKRISITFRKMD 148 (254)
Q Consensus 107 ~~~l~L~~GSLlVMsG~aR~~w~--------H~Ip~~r~~RISLTFR~~~ 148 (254)
=+.|.-.+|+++|.-|++-..|+ |.|......|+||.|-...
T Consensus 226 Wi~V~p~pg~lvVNvGD~l~~~TnG~~kSt~HRVv~~~~~R~Si~~F~~p 275 (320)
T PTZ00273 226 WMDVPPLEGSFVVNIGDMMEMWSNGRYRSTPHRVVNTGVERYSMPFFCEP 275 (320)
T ss_pred EEeCCCCCCeEEEEHHHHHHHHHCCeeeCCCccccCCCCCeEEEEEEEcC
Confidence 35788889999999888877774 7665555679999988764
No 27
>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=44.23 E-value=60 Score=30.07 Aligned_cols=83 Identities=20% Similarity=0.269 Sum_probs=50.6
Q ss_pred CeEEEeecCCCCCCCCCCCCC-C-CCCCEEEEcCCCceeEEeecccccCCCCCC-------------CccEEEEcCCCcE
Q 025324 53 NSCIVNIYDEGDCIPPHIDHH-D-FLRPFCTVSFLTECNILFGSSLKIVGPGEF-------------SGPISIPLPVGSV 117 (254)
Q Consensus 53 n~clIN~Y~~Gd~I~pH~D~~-~-f~~pIvsLSLGs~~~m~Fg~~~~~~~~~~~-------------~~~~~l~L~~GSL 117 (254)
--+-++.|.+|+.+..|-|.- . -.+-|..+ ++ |.+.-+.+.-|+. ....+|.=.=++|
T Consensus 136 ve~~~~~y~~G~~l~~H~D~~~~~~~R~~~yv-~y------~~r~wkpe~GGeL~l~~s~~~~~~~~~~~~ti~P~fn~l 208 (252)
T COG3751 136 VEGQITVYNPGCFLLKHDDNGRDKDIRLATYV-YY------LTREWKPEYGGELRLFHSLQKNNTAADSFKTIAPVFNSL 208 (252)
T ss_pred eeeeeeEecCCceeEeecccCCCccceEEEEE-ec------cCCCCCcCCCCceeecccccccccccccccccCCCCceE
Confidence 356789999999999999963 2 33333322 22 2222111111111 1123466667889
Q ss_pred EEeCCCcccccceecCC--CCCCcEEEE
Q 025324 118 LILNGNGADVAKHCVPA--VPTKRISIT 143 (254)
Q Consensus 118 lVMsG~aR~~w~H~Ip~--~r~~RISLT 143 (254)
++|.-.....| |.|.+ ....|++||
T Consensus 209 v~F~s~~~Hs~-h~V~~~~~~~~RlsV~ 235 (252)
T COG3751 209 VFFKSRPSHSV-HSVEEPYAAADRLSVT 235 (252)
T ss_pred EEEEecCCccc-eeccccccccceEEEe
Confidence 99887766555 77777 788999999
No 28
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=40.89 E-value=3.2e+02 Score=25.87 Aligned_cols=116 Identities=15% Similarity=0.165 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHcccCCCCCCCCeEEEeecCCCCCCCCCCCCCC-------CCCCEEEEc-------CCCceeEEeeccc
Q 025324 31 PMFKQMIKRMVRWHILPPTCIPNSCIVNIYDEGDCIPPHIDHHD-------FLRPFCTVS-------FLTECNILFGSSL 96 (254)
Q Consensus 31 ~~L~~Li~rLv~~~ilp~~~~pn~clIN~Y~~Gd~I~pH~D~~~-------f~~pIvsLS-------LGs~~~m~Fg~~~ 96 (254)
+.+..|.+|+..+..++... -+..-|-.|..|+.-.+|.|... -+..++||- -|++.+|-.....
T Consensus 111 pvv~~I~~Ria~~t~lp~~~-~E~lQVlrY~~Gq~Y~~H~D~~~~~~~~~~gg~R~aTvL~YLndv~~GGeT~FP~~~~~ 189 (310)
T PLN00052 111 PVVSRIEERIAAWTFLPEEN-AENIQILRYEHGQKYEPHFDYFHDKINQALGGHRYATVLMYLSTVDKGGETVFPNAEGW 189 (310)
T ss_pred HHHHHHHHHHHHHhCCCccc-CcceEEEecCCCCCCCCCCCccccccccccCCceeEEEEEEeccCCCCCceecCCcccc
Confidence 45677888877655555332 35667778999999999999421 123455442 2223222111000
Q ss_pred ccCCCC----C-CCccEEEEcCCCcEEEeCC-----CcccccceecCC-CCCCcEEEEEecc
Q 025324 97 KIVGPG----E-FSGPISIPLPVGSVLILNG-----NGADVAKHCVPA-VPTKRISITFRKM 147 (254)
Q Consensus 97 ~~~~~~----~-~~~~~~l~L~~GSLlVMsG-----~aR~~w~H~Ip~-~r~~RISLTFR~~ 147 (254)
...... + ....+.|.-..|+.|++.- ..-..-.|+..+ ..+.++.+|..-.
T Consensus 190 ~~~~~~~~~s~c~~~gl~VkPkkG~ALlF~nl~~dG~~D~~SlHagcPVi~G~Kw~atkWi~ 251 (310)
T PLN00052 190 ENQPKDDTFSECAHKGLAVKPVKGDAVLFFSLHIDGVPDPLSLHGSCPVIEGEKWSAPKWIH 251 (310)
T ss_pred cccccccchhhhhcCCeEeccCcceEEEEeccCCCCCCCcccccCCCeeecCeEEEEEEeee
Confidence 000000 0 0124788899999999763 222334688888 5788999985433
No 29
>PLN02997 flavonol synthase
Probab=38.38 E-value=58 Score=30.68 Aligned_cols=42 Identities=14% Similarity=0.071 Sum_probs=32.1
Q ss_pred cEEEEcCCCcEEEeCCCcccccc--------eecCC-CCCCcEEEEEeccc
Q 025324 107 PISIPLPVGSVLILNGNGADVAK--------HCVPA-VPTKRISITFRKMD 148 (254)
Q Consensus 107 ~~~l~L~~GSLlVMsG~aR~~w~--------H~Ip~-~r~~RISLTFR~~~ 148 (254)
=+.|.-.+|+++|.-|++-..|+ |.|.. ....|+|+.|-..-
T Consensus 230 Wi~V~p~pgalvVNiGD~Le~~TNG~~kSt~HRVv~~~~~~R~Si~fF~~P 280 (325)
T PLN02997 230 WLDLNYINSAVVVIIGDQLMRMTNGRFKNVLHRAKTDKERLRISWPVFVAP 280 (325)
T ss_pred EEECCCCCCeEEEEechHHHHHhCCccccccceeeCCCCCCEEEEEEEecC
Confidence 45777889999999999988886 66653 23459999987664
No 30
>PLN02947 oxidoreductase
Probab=32.87 E-value=94 Score=29.95 Aligned_cols=42 Identities=19% Similarity=0.190 Sum_probs=31.7
Q ss_pred cEEEEcCCCcEEEeCCCcccccc--------eecCC-CCCCcEEEEEeccc
Q 025324 107 PISIPLPVGSVLILNGNGADVAK--------HCVPA-VPTKRISITFRKMD 148 (254)
Q Consensus 107 ~~~l~L~~GSLlVMsG~aR~~w~--------H~Ip~-~r~~RISLTFR~~~ 148 (254)
=+.|.-.+|.++|--|+.-..|+ |.|.. ....|+||.|-...
T Consensus 272 Wi~V~p~pga~VVNvGD~Lq~~SNG~~kS~~HRVv~~~~~~R~Sia~F~~P 322 (374)
T PLN02947 272 WVTVEPIPGSFVVNVGDHLEIFSNGRYKSVLHRVRVNSTKPRISVASLHSL 322 (374)
T ss_pred EEeCCCCCCeEEEEeCceeeeeeCCEEeccccccccCCCCCEEEEEEEecC
Confidence 35677788899998888888875 66642 45579999998764
No 31
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=30.08 E-value=1.4e+02 Score=27.28 Aligned_cols=41 Identities=17% Similarity=0.273 Sum_probs=31.4
Q ss_pred EEEEcCCCcEEEeCCCcccccc--------eecCC-CCCCcEEEEEeccc
Q 025324 108 ISIPLPVGSVLILNGNGADVAK--------HCVPA-VPTKRISITFRKMD 148 (254)
Q Consensus 108 ~~l~L~~GSLlVMsG~aR~~w~--------H~Ip~-~r~~RISLTFR~~~ 148 (254)
+.|.-.+|+++|.-|++-..|+ |.|-. ....|+||.|-...
T Consensus 164 i~V~p~p~a~vVNiGD~l~~~tng~~~S~~HRVv~~~~~~R~Sia~F~~p 213 (262)
T PLN03001 164 LMVPPISDAILIIIADQTEIITNGNYKSAQHRAIANANKARLSVATFHDP 213 (262)
T ss_pred EECCCCCCcEEEEccHHHHHHhCCccccccceEEcCCCCCEEEEEEEEcC
Confidence 5677788999999999998887 55543 34569999988653
No 32
>PLN02485 oxidoreductase
Probab=29.71 E-value=1.4e+02 Score=27.79 Aligned_cols=42 Identities=19% Similarity=0.106 Sum_probs=32.7
Q ss_pred cEEEEcCCCcEEEeCCCcccccc--------eecCC-CCCCcEEEEEeccc
Q 025324 107 PISIPLPVGSVLILNGNGADVAK--------HCVPA-VPTKRISITFRKMD 148 (254)
Q Consensus 107 ~~~l~L~~GSLlVMsG~aR~~w~--------H~Ip~-~r~~RISLTFR~~~ 148 (254)
=+.|.-.+|.++|.-|++-..|+ |.|.. ....|+|+.|-..-
T Consensus 237 Wi~V~p~pg~~vVNiGD~L~~~TnG~~~St~HRVv~~~~~~R~Si~~F~~p 287 (329)
T PLN02485 237 WIWAIPIPGTFVCNIGDMLKIWSNGVYQSTLHRVINNSPKYRVCVAFFYET 287 (329)
T ss_pred EEECCCCCCcEEEEhHHHHHHHHCCEeeCCCceecCCCCCCeEEEEEEecC
Confidence 36788889999999999988887 77654 34569999988553
No 33
>PLN02216 protein SRG1
Probab=29.07 E-value=1.8e+02 Score=27.71 Aligned_cols=41 Identities=12% Similarity=0.145 Sum_probs=31.7
Q ss_pred EEEEcCCCcEEEeCCCcccccc--------eecCC-CCCCcEEEEEeccc
Q 025324 108 ISIPLPVGSVLILNGNGADVAK--------HCVPA-VPTKRISITFRKMD 148 (254)
Q Consensus 108 ~~l~L~~GSLlVMsG~aR~~w~--------H~Ip~-~r~~RISLTFR~~~ 148 (254)
+.|.-.+|.++|.-|++-..|+ |.|.. ....|+||.|-...
T Consensus 259 i~V~p~pgalvVNiGD~L~~~TNG~~kS~~HRVv~~~~~~R~Si~~F~~P 308 (357)
T PLN02216 259 VSVKPLPNALVVNVGDILEIITNGTYRSIEHRGVVNSEKERLSVATFHNT 308 (357)
T ss_pred EECCCCCCeEEEEcchhhHhhcCCeeeccCceeecCCCCCEEEEEEEecC
Confidence 5677788999999999888886 77643 44579999998654
No 34
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=27.29 E-value=1.4e+02 Score=28.39 Aligned_cols=42 Identities=21% Similarity=0.265 Sum_probs=32.4
Q ss_pred cEEEEcCCCcEEEeCCCcccccc--------eecCC-CCCCcEEEEEeccc
Q 025324 107 PISIPLPVGSVLILNGNGADVAK--------HCVPA-VPTKRISITFRKMD 148 (254)
Q Consensus 107 ~~~l~L~~GSLlVMsG~aR~~w~--------H~Ip~-~r~~RISLTFR~~~ 148 (254)
=+.|.-.+|+++|.-|++-..|+ |.|-. ....|+||.|-..-
T Consensus 251 Wi~V~p~pg~lVVNiGD~Le~~Tng~~kSt~HRVv~~~~~~R~Si~fF~~P 301 (348)
T PLN00417 251 WYKAPIVPDTILINVGDQMEIMSNGIYKSPVHRVVTNREKERISVATFCIP 301 (348)
T ss_pred EEECCCCCCcEEEEcChHHHHHhCCeecccceEEecCCCCCEEEEEEEecC
Confidence 35677889999999999988886 55532 34579999998764
No 35
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=26.44 E-value=1.8e+02 Score=27.47 Aligned_cols=42 Identities=26% Similarity=0.200 Sum_probs=32.3
Q ss_pred cEEEEcCCCcEEEeCCCcccccc--------eecCC-CCCCcEEEEEeccc
Q 025324 107 PISIPLPVGSVLILNGNGADVAK--------HCVPA-VPTKRISITFRKMD 148 (254)
Q Consensus 107 ~~~l~L~~GSLlVMsG~aR~~w~--------H~Ip~-~r~~RISLTFR~~~ 148 (254)
=+.|.-.+|+++|--|++-..|+ |.|-. ....|+||.|-...
T Consensus 242 Wi~V~p~pg~~vVNiGD~L~~~Tng~~~St~HRVv~~~~~~R~Si~~F~~P 292 (345)
T PLN02750 242 WIPVKPIPDAFIINIGNCMQVWTNDLYWSAEHRVVVNSQKERFSIPFFFFP 292 (345)
T ss_pred EEEccCCCCeEEEEhHHHHHHHhCCeeecccceeccCCCCCEEEEEEeecC
Confidence 36788899999999999888886 55542 35679999988764
No 36
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=26.17 E-value=1.1e+02 Score=29.11 Aligned_cols=43 Identities=19% Similarity=0.134 Sum_probs=32.5
Q ss_pred cEEEEcCCCcEEEeCCCcccccc--------eecC-CCCCCcEEEEEecccC
Q 025324 107 PISIPLPVGSVLILNGNGADVAK--------HCVP-AVPTKRISITFRKMDD 149 (254)
Q Consensus 107 ~~~l~L~~GSLlVMsG~aR~~w~--------H~Ip-~~r~~RISLTFR~~~~ 149 (254)
=+.|.-.+|.++|--|++-..|+ |.|- +....|+||.|-..-.
T Consensus 244 Wi~V~p~pgalvVNiGD~L~~~TNG~~kSt~HRVv~~~~~~R~Sia~F~~p~ 295 (348)
T PLN02912 244 WIAVNPIPNTFIVNLGDQMQVISNDKYKSVLHRAVVNTDKERISIPTFYCPS 295 (348)
T ss_pred EEECCCcCCeEEEEcCHHHHHHhCCEEEcccccccCCCCCCEEEEEEEecCC
Confidence 45677889999999999887775 6653 3456699999987653
No 37
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=25.54 E-value=2.3e+02 Score=27.16 Aligned_cols=42 Identities=17% Similarity=0.137 Sum_probs=32.2
Q ss_pred cEEEEcCCCcEEEeCCCcccccc--------eecC-CCCCCcEEEEEeccc
Q 025324 107 PISIPLPVGSVLILNGNGADVAK--------HCVP-AVPTKRISITFRKMD 148 (254)
Q Consensus 107 ~~~l~L~~GSLlVMsG~aR~~w~--------H~Ip-~~r~~RISLTFR~~~ 148 (254)
=+.|.-.+|+++|.-|++-..|+ |.|. .....|+||.|-...
T Consensus 244 Wi~Vpp~pgalVVNiGD~L~~~TNG~~kSt~HRVv~~~~~~R~Si~~F~~P 294 (358)
T PLN02515 244 WITVQPVEGAFVVNLGDHGHYLSNGRFKNADHQAVVNSNCSRLSIATFQNP 294 (358)
T ss_pred EEECCCCCCeEEEEccHHHHHHhCCeeeeecceEECCCCCCEEEEEEEecC
Confidence 35788889999999999888885 6653 344679999998664
No 38
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=25.03 E-value=70 Score=27.35 Aligned_cols=37 Identities=24% Similarity=0.294 Sum_probs=26.9
Q ss_pred cEEEEcCCCcEEEeCCCcccccceecCCC--CCCcEEEEEecc
Q 025324 107 PISIPLPVGSVLILNGNGADVAKHCVPAV--PTKRISITFRKM 147 (254)
Q Consensus 107 ~~~l~L~~GSLlVMsG~aR~~w~H~Ip~~--r~~RISLTFR~~ 147 (254)
.+.+.|++||+|.+... |-|.|... .+--||++|.-.
T Consensus 208 ~~~~~l~pGD~LfiP~g----WwH~V~~~~~~~~sisvn~w~~ 246 (251)
T PF13621_consen 208 PYEVVLEPGDVLFIPPG----WWHQVENLSDDDLSISVNYWFR 246 (251)
T ss_dssp EEEEEEETT-EEEE-TT-----EEEEEESTTSSCEEEEEEEEE
T ss_pred eeEEEECCCeEEEECCC----CeEEEEEcCCCCeEEEEEEEec
Confidence 47899999999999865 78999887 444788887543
No 39
>COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.36 E-value=85 Score=29.85 Aligned_cols=38 Identities=24% Similarity=0.416 Sum_probs=31.4
Q ss_pred cEEEEcCCCcEEEeCCCcccccceecCC--CCCCcEEEEEeccc
Q 025324 107 PISIPLPVGSVLILNGNGADVAKHCVPA--VPTKRISITFRKMD 148 (254)
Q Consensus 107 ~~~l~L~~GSLlVMsG~aR~~w~H~Ip~--~r~~RISLTFR~~~ 148 (254)
.+.+.|+.||+|++.+.. | |+-.. ....|+.+||+-+.
T Consensus 192 ~~pv~lekGDallF~~~L---~-HaA~aNrT~~~R~A~~~~~~~ 231 (299)
T COG5285 192 AVPVELEKGDALLFNGSL---W-HAAGANRTSADRVALTLQFTV 231 (299)
T ss_pred ceeeeecCCCEEEEcchh---h-hhhhcCCCCcccceEEEEEee
Confidence 467999999999999874 3 77776 44689999999876
Done!