BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025325
(254 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EKJ|A Chain A, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|B Chain B, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|C Chain C, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|D Chain D, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|E Chain E, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|F Chain F, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|G Chain G, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|H Chain H, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
Length = 221
Score = 201 bits (511), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 93/121 (76%), Positives = 101/121 (83%)
Query: 113 DSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAF 172
++ ERIK GF+HFK+EKY+KNPALY ELAKGQSP +MVFACSDSRVCPSHVLDFQPGEAF
Sbjct: 12 EASERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAF 71
Query: 173 VVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNS 232
VVRNVAN+VPPYDQ K LHLKVSNIVVIGHSACGGIKGL+SF FDG S
Sbjct: 72 VVRNVANLVPPYDQAKYAGTGAAIEYAVLHLKVSNIVVIGHSACGGIKGLLSFPFDGTYS 131
Query: 233 T 233
T
Sbjct: 132 T 132
>pdb|3QY1|A Chain A, 1.54a Resolution Crystal Structure Of A Beta-Carbonic
Anhydrase From Salmonella Enterica Subsp. Enterica
Serovar Typhimurium Str. Lt2
pdb|3QY1|B Chain B, 1.54a Resolution Crystal Structure Of A Beta-Carbonic
Anhydrase From Salmonella Enterica Subsp. Enterica
Serovar Typhimurium Str. Lt2
Length = 223
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 10/113 (8%)
Query: 131 EKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXX 190
E++P + +LA+ Q P+++ CSDSRV + +PGE FV RNVAN+V D
Sbjct: 23 EEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTDLNCLS 82
Query: 191 XXXXXXXXXXLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTYGLICKLIIH 243
L+V +I++ GHS CGGIK + N GLI ++H
Sbjct: 83 VVQYAVDV----LEVEHIIICGHSGCGGIKAAVE------NPELGLINNWLLH 125
>pdb|1DDZ|A Chain A, X-Ray Structure Of A Beta-Carbonic Anhydrase From The Red
Alga, Porphyridium Purpureum R-1
pdb|1DDZ|B Chain B, X-Ray Structure Of A Beta-Carbonic Anhydrase From The Red
Alga, Porphyridium Purpureum R-1
Length = 496
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 61/119 (51%), Gaps = 10/119 (8%)
Query: 125 FKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPY 184
+++E +++P ++ LA GQSP+Y+ C+DSRV + +LD GE FV RN+AN
Sbjct: 46 WRQEMLKQDPEFFNRLANGQSPEYLWIGCADSRVPANQLLDLPAGEVFVHRNIANQCIHS 105
Query: 185 DQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTYGLICKLIIH 243
D +LKV +I+V GH CGG K + +S GLI + H
Sbjct: 106 D----ISFLSVLQYAVQYLKVKHILVCGHYGCGGAKAALG------DSRLGLIDNWLRH 154
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 75/150 (50%), Gaps = 14/150 (9%)
Query: 96 VEQITAQL--QTPSDTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFAC 153
+E++TA+L QTP K + R+ +++++ +++P +S LA Q+P+ + C
Sbjct: 271 MEKLTAELVQQTPGKLK--EGANRVFVNNENWRQKMLKQDPQFFSNLAHTQTPEILWIGC 328
Query: 154 SDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGH 213
+DSRV + +++ GE FV RN+AN D + +LKV +VV GH
Sbjct: 329 ADSRVPANQIINLPAGEVFVHRNIANQCIHSDMS----FLSVLQYAVQYLKVKRVVVCGH 384
Query: 214 SACGGIKGLMSFTFDGNNSTYGLICKLIIH 243
ACGG + +S GLI + H
Sbjct: 385 YACGGCAAALG------DSRLGLIDNWLRH 408
>pdb|3E3G|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|C Chain C, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|D Chain D, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|E Chain E, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|F Chain F, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3I|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|C Chain C, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|D Chain D, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|E Chain E, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|F Chain F, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|G Chain G, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|H Chain H, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|I Chain I, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|J Chain J, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|K Chain K, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|L Chain L, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
Length = 229
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 67/132 (50%), Gaps = 13/132 (9%)
Query: 115 VERIKEGFIH---FKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEA 171
+++IK+ F + + + E+N + ELA Q+P Y+ ACSDSRV + + +PGE
Sbjct: 1 MDKIKQLFANNYSWAQRMKEENSTYFKELADHQTPHYLWIACSDSRVPAEKLTNLEPGEL 60
Query: 172 FVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIKGLMSFTFDGNN 231
FV RNVAN V D LK+ +I++ GH+ CGGI M+ +
Sbjct: 61 FVHRNVANQVIHTDFNCLSVVQYAVDV----LKIEHIIICGHTNCGGIHAAMA------D 110
Query: 232 STYGLICKLIIH 243
GLI ++H
Sbjct: 111 KDLGLINNWLLH 122
>pdb|2W3N|A Chain A, Structure And Inhibition Of The Co2-Sensing Carbonic
Anhydrase Can2 From The Pathogenic Fungus Cryptococcus
Neoformans
pdb|2W3N|B Chain B, Structure And Inhibition Of The Co2-Sensing Carbonic
Anhydrase Can2 From The Pathogenic Fungus Cryptococcus
Neoformans
pdb|2W3N|C Chain C, Structure And Inhibition Of The Co2-Sensing Carbonic
Anhydrase Can2 From The Pathogenic Fungus Cryptococcus
Neoformans
Length = 239
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 4/122 (3%)
Query: 97 EQITAQLQTPSDTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDS 156
++I L + F + + EG ++ R+ + P +E KGQ+P ++ C+DS
Sbjct: 12 DEIDMDLGHSVAAQKFKEIREVLEGNRYWARKVTSEEPEFMAEQVKGQAPNFLWIGCADS 71
Query: 157 RVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSAC 216
RV ++ +PG+ FV RNVAN P D + +++ V++++V+GH+ C
Sbjct: 72 RVPEVTIMARKPGDVFVQRNVANQFKPEDDSS----QALLNYAIMNVGVTHVMVVGHTGC 127
Query: 217 GG 218
GG
Sbjct: 128 GG 129
>pdb|2W3Q|A Chain A, Structure And Inhibition Of The Co2-Sensing Carbonic
Anhydrase Can2 From The Pathogenic Fungus Cryptococcus
Neoformans
Length = 243
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 4/122 (3%)
Query: 97 EQITAQLQTPSDTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDS 156
++I L + F + + EG ++ R+ + P +E KGQ+P ++ C+DS
Sbjct: 16 DEIDMDLGHSVAAQKFKEIREVLEGNRYWARKVTSEEPEFMAEQVKGQAPNFLWIGCADS 75
Query: 157 RVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSAC 216
RV ++ +PG+ FV RNVAN P D + +++ V++++V+GH+ C
Sbjct: 76 RVPEVTIMARKPGDVFVQRNVANQFKPEDDS----SQALLNYAIMNVGVTHVMVVGHTGC 131
Query: 217 GG 218
GG
Sbjct: 132 GG 133
>pdb|3E24|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant W39f
pdb|3E24|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant W39f
Length = 229
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 13/132 (9%)
Query: 115 VERIKEGFIH---FKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEA 171
+++IK+ F + + + E+N + ELA Q+P Y+ CSDSRV + + +PGE
Sbjct: 1 MDKIKQLFANNYSWAQRMKEENSTYFKELADHQTPHYLFIGCSDSRVPAEKLTNLEPGEL 60
Query: 172 FVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIKGLMSFTFDGNN 231
FV RNVAN V D LK+ +I++ GH+ CGGI M+ +
Sbjct: 61 FVHRNVANQVIHTDFNCLSVVQYAVDV----LKIEHIIICGHTNCGGIHAAMA------D 110
Query: 232 STYGLICKLIIH 243
GLI ++H
Sbjct: 111 KDLGLINNWLLH 122
>pdb|3E28|A Chain A, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|B Chain B, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|C Chain C, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|D Chain D, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|E Chain E, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|F Chain F, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E2A|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|C Chain C, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|D Chain D, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|E Chain E, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|F Chain F, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2W|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|C Chain C, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|D Chain D, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|E Chain E, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|F Chain F, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
Length = 229
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 13/132 (9%)
Query: 115 VERIKEGFIH---FKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEA 171
+++IK+ F + + + E+N + ELA Q+P Y+ CSDSRV + + +PGE
Sbjct: 1 MDKIKQLFANNYSWAQRMKEENSTYFKELADHQTPHYLWIGCSDSRVPAEKLTNLEPGEL 60
Query: 172 FVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIKGLMSFTFDGNN 231
FV RNVAN V D LK+ +I++ GH+ CGGI M+ +
Sbjct: 61 FVHRNVANQVIHTDFNCLSVVQYAVDV----LKIEHIIICGHTNCGGIHAAMA------D 110
Query: 232 STYGLICKLIIH 243
GLI ++H
Sbjct: 111 KDLGLINNWLLH 122
>pdb|2A8C|A Chain A, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|B Chain B, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|C Chain C, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|D Chain D, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|E Chain E, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|F Chain F, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8D|A Chain A, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|B Chain B, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|C Chain C, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|D Chain D, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|E Chain E, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|F Chain F, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
Length = 229
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 13/132 (9%)
Query: 115 VERIKEGFIH---FKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEA 171
+++IK+ F + + + E+N + ELA Q+P Y+ CSDSRV + + +PGE
Sbjct: 1 MDKIKQLFANNYSWAQRMKEENSTYFKELADHQTPHYLWIGCSDSRVPAEKLTNLEPGEL 60
Query: 172 FVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIKGLMSFTFDGNN 231
FV RNVAN V D LK+ +I++ GH+ CGGI M+ +
Sbjct: 61 FVHRNVANQVIHTDFNCLSVVQYAVDV----LKIEHIIICGHTNCGGIHAAMA------D 110
Query: 232 STYGLICKLIIH 243
GLI ++H
Sbjct: 111 KDLGLINNWLLH 122
>pdb|3MF3|A Chain A, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|B Chain B, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|C Chain C, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|D Chain D, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|E Chain E, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|F Chain F, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
Length = 221
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 13/132 (9%)
Query: 115 VERIKEGFIH---FKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEA 171
+++IK+ F + + + E+N + ELA Q+P Y+ CSDSRV + + +PGE
Sbjct: 1 MDKIKQLFANNYSWAQRMKEENSTYFKELADHQTPHYLWIGCSDSRVPAEKLTNLEPGEL 60
Query: 172 FVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIKGLMSFTFDGNN 231
FV RNVAN V D LK+ +I++ GH+ CGGI M+ +
Sbjct: 61 FVHRNVANQVIHTDFNCLSVVQYAVDV----LKIEHIIICGHTNCGGIHAAMA------D 110
Query: 232 STYGLICKLIIH 243
GLI ++H
Sbjct: 111 KDLGLINNWLLH 122
>pdb|1I6P|A Chain A, Crystal Structure Of E. Coli Beta Carbonic Anhydrase
(Ecca)
pdb|1T75|A Chain A, Crystal Structure Of Escherichia Coli Beta Carbonic
Anhydrase
pdb|1T75|B Chain B, Crystal Structure Of Escherichia Coli Beta Carbonic
Anhydrase
pdb|1T75|D Chain D, Crystal Structure Of Escherichia Coli Beta Carbonic
Anhydrase
pdb|1T75|E Chain E, Crystal Structure Of Escherichia Coli Beta Carbonic
Anhydrase
pdb|2ESF|A Chain A, Identification Of A Novel Non-catalytic Bicarbonate
Binding Site In Eubacterial Beta-carbonic Anhydrase
pdb|2ESF|B Chain B, Identification Of A Novel Non-catalytic Bicarbonate
Binding Site In Eubacterial Beta-carbonic Anhydrase
Length = 220
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 10/113 (8%)
Query: 131 EKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXX 190
E++P + +LA+ Q P+++ CSDSRV + +PGE FV RNVAN+V D
Sbjct: 20 EEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTDLNCLS 79
Query: 191 XXXXXXXXXXLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTYGLICKLIIH 243
L+V +I++ GH CGG++ + N GLI ++H
Sbjct: 80 VVQYAVDV----LEVEHIIICGHYGCGGVQAAVE------NPELGLINNWLLH 122
>pdb|1I6O|A Chain A, Crystal Structure Of E. Coli Beta Carbonic Anhydrase
(Ecca)
pdb|1I6O|B Chain B, Crystal Structure Of E. Coli Beta Carbonic Anhydrase
(Ecca)
Length = 220
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 10/113 (8%)
Query: 131 EKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXX 190
E++P + +LA+ Q P+++ CSDSRV + +PGE FV RNVAN+V D
Sbjct: 20 EEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTDLNCLS 79
Query: 191 XXXXXXXXXXLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTYGLICKLIIH 243
L+V +I++ GH CGG++ + N GLI ++H
Sbjct: 80 VVQYAVDV----LEVEHIIICGHYGCGGVQAAVE------NPELGLINNWLLH 122
>pdb|3E2X|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a
pdb|3E2X|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a
pdb|3E31|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a
pdb|3E31|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a
pdb|3E3F|A Chain A, H. Influenzae Beta-carbonic Anhydrase, Variant V47a With
100 Mm Bicarbonate
pdb|3E3F|B Chain B, H. Influenzae Beta-carbonic Anhydrase, Variant V47a With
100 Mm Bicarbonate
Length = 229
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 65/132 (49%), Gaps = 13/132 (9%)
Query: 115 VERIKEGFIH---FKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEA 171
+++IK+ F + + + E+N + ELA Q+P Y+ CSDSR + + +PGE
Sbjct: 1 MDKIKQLFANNYSWAQRMKEENSTYFKELADHQTPHYLWIGCSDSRAPAEKLTNLEPGEL 60
Query: 172 FVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIKGLMSFTFDGNN 231
FV RNVAN V D LK+ +I++ GH+ CGGI M+ +
Sbjct: 61 FVHRNVANQVIHTDFNCLSVVQYAVDV----LKIEHIIICGHTNCGGIHAAMA------D 110
Query: 232 STYGLICKLIIH 243
GLI ++H
Sbjct: 111 KDLGLINNWLLH 122
>pdb|3E1V|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant D44n
pdb|3E1V|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant D44n
pdb|3E1W|A Chain A, H. Influenzae Beta-carbonic Anhydrase, Variant D44n In 100
Mm Sodium Bicarbonate
pdb|3E1W|B Chain B, H. Influenzae Beta-carbonic Anhydrase, Variant D44n In 100
Mm Sodium Bicarbonate
Length = 229
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 13/132 (9%)
Query: 115 VERIKEGFIH---FKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEA 171
+++IK+ F + + + E+N + ELA Q+P Y+ CS+SRV + + +PGE
Sbjct: 1 MDKIKQLFANNYSWAQRMKEENSTYFKELADHQTPHYLWIGCSNSRVPAEKLTNLEPGEL 60
Query: 172 FVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIKGLMSFTFDGNN 231
FV RNVAN V D LK+ +I++ GH+ CGGI M+ +
Sbjct: 61 FVHRNVANQVIHTDFNCLSVVQYAVDV----LKIEHIIICGHTNCGGIHAAMA------D 110
Query: 232 STYGLICKLIIH 243
GLI ++H
Sbjct: 111 KDLGLINNWLLH 122
>pdb|3UCJ|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Acetazolamide
pdb|3UCJ|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Acetazolamide
pdb|3UCK|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Phosphate
pdb|3UCK|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Phosphate
pdb|3UCM|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Thiocyanate
pdb|3UCM|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Thiocyanate
pdb|3UCN|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With Azide
pdb|3UCN|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With Azide
pdb|3UCO|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With Iodide
pdb|3UCO|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With Iodide
Length = 227
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 125 FKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPY 184
+ E K+ +S++A Q+P+Y+ C+DSRV P+ + + PGE FV RNV N+V
Sbjct: 19 WADECAAKDSTYFSKVAGSQAPEYLYIGCADSRVSPAQLFNMAPGEVFVQRNVGNLV--- 75
Query: 185 DQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIK 220
K HLK+ +I+V GH CG K
Sbjct: 76 -SNKDLNCMSCLEYTVDHLKIKHILVCGHYNCGACK 110
>pdb|3EYX|A Chain A, Crystal Structure Of Carbonic Anhydrase Nce103 From
Saccharomyces Cerevisiae
pdb|3EYX|B Chain B, Crystal Structure Of Carbonic Anhydrase Nce103 From
Saccharomyces Cerevisiae
Length = 216
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 141 AKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXX 200
AKGQSP + CSDSR + L PGE F +NVANI D T
Sbjct: 40 AKGQSPHTLFIGCSDSRY-NENCLGVLPGEVFTWKNVANICHSEDLT----LKATLEFAI 94
Query: 201 LHLKVSNIVVIGHSACGGIKGLMS 224
+ LKV+ +++ GH+ CGGIK ++
Sbjct: 95 ICLKVNKVIICGHTDCGGIKTCLT 118
>pdb|1YM3|A Chain A, Crystal Structure Of Carbonic Anhydrase Rv3588c From
Mycobacterium Tuberculosis
Length = 215
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 140 LAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXX 199
LA GQ P ++F C+DSRV + D G+ FVVR +++
Sbjct: 46 LAAGQKPTAVIFGCADSRVAAEIIFDQGLGDMFVVRTAGHVID-------SAVLGSIEYA 98
Query: 200 XLHLKVSNIVVIGHSACGGIKGLMSFTFDG 229
L V IVV+GH +CG + ++ DG
Sbjct: 99 VTVLNVPLIVVLGHDSCGAVNAALAAINDG 128
>pdb|2A5V|A Chain A, Crystal Structure Of M. Tuberculosis Beta Carbonic
Anhydrase, Rv3588c, Tetrameric Form
pdb|2A5V|B Chain B, Crystal Structure Of M. Tuberculosis Beta Carbonic
Anhydrase, Rv3588c, Tetrameric Form
pdb|2A5V|C Chain C, Crystal Structure Of M. Tuberculosis Beta Carbonic
Anhydrase, Rv3588c, Tetrameric Form
pdb|2A5V|D Chain D, Crystal Structure Of M. Tuberculosis Beta Carbonic
Anhydrase, Rv3588c, Tetrameric Form
Length = 213
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 140 LAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXX 199
LA GQ P ++F C+DSRV + D G+ FVVR +++
Sbjct: 44 LAAGQKPTAVIFGCADSRVAAEIIFDQGLGDMFVVRTAGHVID-------SAVLGSIEYA 96
Query: 200 XLHLKVSNIVVIGHSACGGIKGLMSFTFDG 229
L V IVV+GH +CG + ++ DG
Sbjct: 97 VTVLNVPLIVVLGHDSCGAVNAALAAINDG 126
>pdb|3VQJ|A Chain A, Crystal Structutre Of Thiobacillus Thioparus Thi115
Carbonyl Sulfide Hydrolase
pdb|3VRK|A Chain A, Crystal Structutre Of Thiobacillus Thioparus Thi115
Carbonyl Sulfide Hydrolase / Thiocyanate Complex
Length = 219
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 11/84 (13%)
Query: 145 SPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLK 204
S + V AC D+R+ +L Q GEA ++RN ++ D + L
Sbjct: 36 SRRVAVVACMDARLDVEDLLGLQTGEAHIIRNAGGVI-NEDAIRCLIISHHL------LN 88
Query: 205 VSNIVVIGHSACGGIKGLMSFTFD 228
I+++ H+ C G+++FT D
Sbjct: 89 THEIILVHHTRC----GMLAFTDD 108
>pdb|1G5C|A Chain A, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
pdb|1G5C|B Chain B, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
pdb|1G5C|C Chain C, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
pdb|1G5C|D Chain D, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
pdb|1G5C|E Chain E, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
pdb|1G5C|F Chain F, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
Length = 170
Score = 34.7 bits (78), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 9/76 (11%)
Query: 144 QSPKYMVFACSDSRVCP--SHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXL 201
SPK + C DSR+ L G+A V++N NIV
Sbjct: 23 HSPKLCIITCMDSRLIDLLERALGIGRGDAKVIKNAGNIVDD-------GVIRSAAVAIY 75
Query: 202 HLKVSNIVVIGHSACG 217
L + I+++GH+ CG
Sbjct: 76 ALGDNEIIIVGHTDCG 91
>pdb|1YLK|A Chain A, Crystal Structure Of Rv1284 From Mycobacterium
Tuberculosis In Complex With Thiocyanate
pdb|1YLK|B Chain B, Crystal Structure Of Rv1284 From Mycobacterium
Tuberculosis In Complex With Thiocyanate
pdb|1YLK|C Chain C, Crystal Structure Of Rv1284 From Mycobacterium
Tuberculosis In Complex With Thiocyanate
pdb|1YLK|D Chain D, Crystal Structure Of Rv1284 From Mycobacterium
Tuberculosis In Complex With Thiocyanate
Length = 172
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 16/106 (15%)
Query: 128 EKYEKNPALYSELAKGQSP----KYM-VFACSDSRVCPSHVLDFQPGEAFVVRNVANIVP 182
+ Y N Y+ KG P K++ + AC D+R+ +L + GEA V+RN +V
Sbjct: 14 DDYLANNVDYASGFKGPLPMPPSKHIAIVACMDARLDVYRMLGIKEGEAHVIRNAGCVVT 73
Query: 183 PYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIKGLMSFTFD 228
D + L I+++ H+ C G+++FT D
Sbjct: 74 D-DVIRSLAISQRL------LGTREIILLHHTDC----GMLTFTDD 108
>pdb|3TEO|A Chain A, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|B Chain B, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|C Chain C, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|D Chain D, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|E Chain E, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|F Chain F, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|G Chain G, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|H Chain H, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|I Chain I, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|J Chain J, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|K Chain K, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|L Chain L, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|M Chain M, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|N Chain N, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|O Chain O, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|P Chain P, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
Length = 204
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 147 KYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVS 206
+ V C D RV L QP +A + RN IV D +
Sbjct: 29 RLWVLTCXDERVHIEQSLGIQPDDAHIYRNAGGIVTD-DAIRSASLTTN------FFGTK 81
Query: 207 NIVVIGHSACGGIK 220
I+V+ H+ CG ++
Sbjct: 82 EIIVVTHTDCGXLR 95
>pdb|3TEN|A Chain A, Holo Form Of Carbon Disulfide Hydrolase
pdb|3TEN|B Chain B, Holo Form Of Carbon Disulfide Hydrolase
pdb|3TEN|C Chain C, Holo Form Of Carbon Disulfide Hydrolase
pdb|3TEN|D Chain D, Holo Form Of Carbon Disulfide Hydrolase
pdb|3TEN|E Chain E, Holo Form Of Carbon Disulfide Hydrolase
pdb|3TEN|F Chain F, Holo Form Of Carbon Disulfide Hydrolase
pdb|3TEN|G Chain G, Holo Form Of Carbon Disulfide Hydrolase
pdb|3TEN|H Chain H, Holo Form Of Carbon Disulfide Hydrolase
Length = 204
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 147 KYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVS 206
+ V C D RV L QP +A + RN IV D +
Sbjct: 29 RLWVLTCMDERVHIEQSLGIQPDDAHIYRNAGGIVTD-DAIRSASLTTN------FFGTK 81
Query: 207 NIVVIGHSACGGIK 220
I+V+ H+ CG ++
Sbjct: 82 EIIVVTHTDCGMLR 95
>pdb|3VGJ|A Chain A, Crystal Of Plasmodium Falciparum Tyrosyl-Trna Synthetase
(Pftyrrs)in Complex With Adenylate Analog
pdb|3VGJ|B Chain B, Crystal Of Plasmodium Falciparum Tyrosyl-Trna Synthetase
(Pftyrrs)in Complex With Adenylate Analog
Length = 373
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 34 RLNSPASPPSLIRNEPVFAAPAPIINPNWRE 64
++ PP++I N P++A II P++ E
Sbjct: 269 KIKKAYCPPNVIENNPIYAYAKSIIFPSYNE 299
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.130 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,088,662
Number of Sequences: 62578
Number of extensions: 197032
Number of successful extensions: 450
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 405
Number of HSP's gapped (non-prelim): 26
length of query: 254
length of database: 14,973,337
effective HSP length: 97
effective length of query: 157
effective length of database: 8,903,271
effective search space: 1397813547
effective search space used: 1397813547
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)