Query 025326
Match_columns 254
No_of_seqs 116 out of 1125
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 08:05:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025326.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025326hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1aua_A Phosphatidylinositol tr 100.0 4.7E-50 1.6E-54 338.8 21.8 235 3-248 30-269 (296)
2 3q8g_A CRAL-TRIO domain-contai 100.0 2.5E-50 8.5E-55 342.7 18.5 236 4-248 40-284 (320)
3 3hx3_A Retinaldehyde-binding p 100.0 2.3E-48 8E-53 330.5 22.4 231 4-246 59-294 (316)
4 1r5l_A Alpha-TTP, protein (alp 100.0 3.7E-48 1.3E-52 321.9 18.9 227 4-248 9-237 (262)
5 1olm_A SEC14-like protein 2; l 100.0 4.2E-47 1.4E-51 333.6 22.2 232 3-248 12-249 (403)
6 3pg7_A Neurofibromin; SEC lipi 99.4 5.1E-13 1.7E-17 109.3 6.3 136 85-236 8-144 (256)
7 3peg_A Neurofibromin; SEC14 do 99.2 1.8E-11 6.1E-16 101.6 5.7 135 86-236 28-163 (290)
8 1wgl_A TOLL-interacting protei 93.4 0.17 5.9E-06 30.9 4.9 27 31-57 22-48 (59)
9 3e21_A HFAF1, FAS-associated f 91.9 0.35 1.2E-05 27.7 4.6 24 31-54 17-41 (45)
10 2di0_A Activating signal coint 89.6 0.66 2.2E-05 29.3 4.6 27 31-57 26-52 (71)
11 1z96_A DNA-damage, UBA-domain 88.5 1 3.6E-05 24.6 4.7 25 31-55 15-39 (40)
12 2dhy_A CUE domain-containing p 88.5 0.95 3.3E-05 28.3 4.8 28 31-58 31-58 (67)
13 2dah_A Ubiquilin-3; UBA domain 88.3 1.4 4.7E-05 26.2 5.3 28 31-58 20-48 (54)
14 1otr_A Protein CUE2; protein-p 87.8 1.2 4E-05 26.0 4.6 28 31-58 17-44 (49)
15 1ufz_A Hypothetical protein BA 86.9 2.6 9E-05 27.3 6.3 43 13-58 33-75 (83)
16 1v92_A NSFL1 cofactor P47; 3-h 85.0 1.7 5.7E-05 24.6 4.3 25 31-55 17-41 (46)
17 2dna_A Unnamed protein product 85.0 2.6 9E-05 26.2 5.4 27 31-57 30-57 (67)
18 1wr1_B Ubiquitin-like protein 84.3 2.6 9E-05 25.4 5.1 27 31-57 28-55 (58)
19 1vej_A Riken cDNA 4931431F19; 82.9 3.2 0.00011 26.4 5.3 26 31-56 40-66 (74)
20 2cp9_A EF-TS, EF-TSMT, elongat 82.5 2.6 9E-05 26.0 4.6 41 2-58 8-48 (64)
21 2dal_A Protein KIAA0794; FAS a 81.5 3.2 0.00011 25.3 4.8 25 31-55 27-51 (62)
22 1veg_A NEDD8 ultimate buster-1 81.4 4.8 0.00016 26.2 5.8 28 31-58 40-67 (83)
23 2jy5_A Ubiquilin-1; UBA, alter 80.6 3.4 0.00012 24.2 4.5 26 31-56 23-49 (52)
24 1wji_A Tudor domain containing 80.3 3.7 0.00013 25.2 4.8 28 31-58 20-47 (63)
25 2dam_A ETEA protein; KIAA0887, 76.1 6.1 0.00021 24.5 4.9 25 32-56 32-56 (67)
26 1q02_A Sequestosome 1; helical 75.2 6.9 0.00023 22.8 4.5 23 34-56 26-48 (52)
27 2dzl_A Protein FAM100B; UBA-li 75.0 7.5 0.00026 24.0 5.1 25 31-55 29-53 (66)
28 1wiv_A UBP14, ubiquitin-specif 74.3 8 0.00027 24.4 5.2 26 31-56 40-65 (73)
29 2knz_A Ubiquilin-4; cytoplasm, 74.0 7 0.00024 22.9 4.6 28 30-57 21-49 (53)
30 2cwb_A Chimera of immunoglobul 73.5 4.4 0.00015 27.8 4.1 27 31-57 77-104 (108)
31 2dak_A Ubiquitin carboxyl-term 72.8 13 0.00045 22.5 5.9 28 31-58 20-47 (63)
32 1ify_A HHR23A, UV excision rep 65.3 8 0.00027 22.2 3.5 27 31-57 19-45 (49)
33 2bwb_A Ubiquitin-like protein 64.2 7.8 0.00027 22.0 3.2 26 31-56 18-44 (46)
34 2oo9_A E3 ubiquitin-protein li 62.6 19 0.00064 20.4 4.9 32 27-58 11-42 (46)
35 2ooa_A E3 ubiquitin-protein li 61.9 16 0.00054 21.3 4.2 32 27-58 18-49 (52)
36 2dai_A Ubadc1, ubiquitin assoc 61.4 22 0.00075 23.0 5.4 28 31-58 40-67 (83)
37 2g3q_A Protein YBL047C; endocy 60.3 10 0.00035 20.9 3.3 27 30-56 14-40 (43)
38 2d9s_A CBL E3 ubiquitin protei 60.2 14 0.00046 21.7 3.7 30 29-58 18-47 (53)
39 1wj7_A Hypothetical protein (R 54.8 38 0.0013 22.9 5.8 28 31-58 51-78 (104)
40 2dag_A Ubiquitin carboxyl-term 54.4 38 0.0013 21.3 5.5 28 31-58 20-48 (74)
41 2kln_A Probable sulphate-trans 53.7 34 0.0012 23.6 5.9 51 150-204 49-99 (130)
42 2ekk_A UBA domain from E3 ubiq 53.2 28 0.00096 19.5 4.4 24 32-56 21-44 (47)
43 2dkl_A Trinucleotide repeat co 53.1 25 0.00087 22.8 4.6 26 31-56 32-57 (85)
44 2juj_A E3 ubiquitin-protein li 52.5 28 0.00095 20.5 4.2 32 27-58 14-45 (56)
45 1vg5_A RSGI RUH-014, rhomboid 52.4 15 0.00051 23.2 3.3 26 31-56 40-65 (73)
46 2cp8_A NEXT to BRCA1 gene 1 pr 52.0 24 0.00083 20.8 4.0 26 32-57 22-47 (54)
47 2ka5_A Putative anti-sigma fac 51.4 29 0.00099 23.9 5.2 52 150-205 53-104 (125)
48 1vdl_A Ubiquitin carboxyl-term 51.4 24 0.00081 22.2 4.0 29 28-56 34-62 (80)
49 1sbo_A Putative anti-sigma fac 49.4 39 0.0013 22.1 5.5 50 151-204 46-95 (110)
50 4dgh_A Sulfate permease family 48.3 44 0.0015 23.0 5.8 51 150-204 50-100 (130)
51 3llo_A Prestin; STAS domain, c 46.2 48 0.0016 23.2 5.8 51 150-204 65-115 (143)
52 1dv0_A DNA repair protein HHR2 46.0 34 0.0012 19.3 3.9 28 28-55 12-39 (47)
53 1xb2_B EF-TS, elongation facto 44.0 37 0.0013 27.6 5.3 40 2-57 3-42 (291)
54 2oo3_A Protein involved in cat 43.2 8.6 0.00029 31.3 1.4 32 182-213 234-265 (283)
55 1oai_A Nuclear RNA export fact 43.2 52 0.0018 19.6 5.7 28 31-58 19-46 (59)
56 1aip_C EF-TS, elongation facto 43.2 51 0.0017 25.1 5.6 40 2-57 2-41 (196)
57 4dgf_A Sulfate transporter sul 42.6 49 0.0017 23.0 5.3 51 150-204 53-103 (135)
58 1p3q_Q VPS9P, vacuolar protein 42.1 18 0.0006 21.4 2.3 27 31-57 25-51 (54)
59 2jp7_A MRNA export factor MEX6 37.9 63 0.0022 19.1 5.3 27 31-57 18-44 (57)
60 3t6o_A Sulfate transporter/ant 37.2 49 0.0017 22.4 4.5 51 150-204 49-100 (121)
61 1wgn_A UBAP1, ubiquitin associ 34.8 58 0.002 19.7 3.7 29 29-57 28-56 (63)
62 1whc_A RSGI RUH-027, UBA/UBX 3 32.8 62 0.0021 19.6 3.9 28 31-58 20-48 (64)
63 3sbx_A Putative uncharacterize 32.8 1.4E+02 0.0047 22.5 6.6 60 170-233 125-189 (189)
64 4dbg_B Ring finger protein 31; 31.8 1.3E+02 0.0044 22.0 5.9 29 30-58 113-141 (162)
65 2lva_A Ubiquitin carboxyl-term 37.9 9.9 0.00034 26.6 0.0 25 33-57 33-57 (129)
66 3bq3_A Defective in cullin ned 31.1 76 0.0026 25.4 5.2 27 31-57 27-53 (270)
67 1h4x_A SPOIIAA, anti-sigma F f 30.7 53 0.0018 21.8 3.7 50 151-204 44-93 (117)
68 4hyl_A Stage II sporulation pr 30.2 44 0.0015 22.3 3.3 51 151-205 44-94 (117)
69 3lay_A Zinc resistance-associa 29.7 1.7E+02 0.0059 21.7 7.3 60 2-66 68-130 (175)
70 1th8_B Anti-sigma F factor ant 29.6 43 0.0015 22.2 3.1 51 151-205 45-95 (116)
71 3qua_A Putative uncharacterize 29.4 1.8E+02 0.0061 22.0 6.8 60 170-233 134-198 (199)
72 1puz_A Conserved hypothetical 28.9 1.1E+02 0.0036 19.6 4.6 23 3-25 39-61 (82)
73 2cpw_A CBL-interacting protein 28.8 71 0.0024 19.3 3.6 26 31-56 30-56 (64)
74 2lbc_A Ubiquitin carboxyl-term 28.3 1E+02 0.0036 21.2 5.0 26 31-56 89-114 (126)
75 3vu7_H DNA repair protein REV1 26.4 61 0.0021 22.6 3.4 29 28-56 54-84 (124)
76 3e7l_A Transcriptional regulat 26.3 1E+02 0.0036 18.1 4.8 22 34-55 21-42 (63)
77 1vek_A UBP14, ubiquitin-specif 26.1 1.3E+02 0.0046 19.2 5.9 28 31-58 40-68 (84)
78 3bee_A Putative YFRE protein; 26.0 1.3E+02 0.0045 19.1 4.9 26 34-59 45-70 (93)
79 4fjo_A DNA repair protein REV1 25.9 65 0.0022 21.3 3.3 30 28-57 27-58 (97)
80 3ny7_A YCHM protein, sulfate t 25.9 88 0.003 21.1 4.2 50 150-204 47-96 (118)
81 3kdg_A DNA mismatch repair pro 23.9 2.3E+02 0.0078 21.2 6.8 32 74-105 152-183 (197)
82 3u0k_A Rcamp; fluorescent prot 23.7 1.3E+02 0.0045 26.0 5.5 18 1-18 295-312 (440)
83 1m3w_A H10H24; four-helix bund 22.8 80 0.0027 15.5 3.1 21 2-22 9-29 (32)
84 2jo7_A Glycosylphosphatidylino 22.1 1.7E+02 0.0059 21.9 5.1 59 7-65 4-71 (224)
85 4gew_A 5'-tyrosyl-DNA phosphod 21.1 1.3E+02 0.0044 24.9 5.1 26 31-56 57-82 (362)
86 1j3a_A 50S ribosomal protein L 20.9 99 0.0034 22.1 3.6 70 147-222 24-103 (142)
87 3a1g_B Polymerase basic protei 20.6 56 0.0019 17.6 1.7 17 2-18 2-18 (40)
88 3i5g_B Myosin regulatory light 20.2 2E+02 0.0068 20.1 5.3 41 2-49 10-50 (153)
89 2lm4_A Succinate dehydrogenase 20.2 43 0.0015 22.9 1.5 13 32-44 67-79 (109)
90 1vq8_J 50S ribosomal protein L 20.1 1.1E+02 0.0036 22.1 3.6 72 147-225 32-110 (145)
No 1
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=100.00 E-value=4.7e-50 Score=338.85 Aligned_cols=235 Identities=25% Similarity=0.384 Sum_probs=202.5
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHhhhhcCCCChHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhCCcchhccCCCCCHHHHH
Q 025326 3 HQEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNILAKPILPAELYR 82 (254)
Q Consensus 3 ~~~~~~~lr~~~~~~~~~l~~~~~~~~~~~~d~~llRfL~a~~~dv~ka~~~l~~~~~wR~~~~~d~~~~~~~~~~~~~~ 82 (254)
.++++++||+++++.+ .+...||.+|+|||||++||+++|.++|.++++||+++++++++.+ ..+.+ ..
T Consensus 30 q~~~l~~lr~~l~~~~---------~~~~~dd~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~-~~~~~-~~ 98 (296)
T 1aua_A 30 QEKALAELRKLLEDAG---------FIERLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQD-FHYDE-KP 98 (296)
T ss_dssp HHHHHHHHHHHHHHTT---------CCSSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHH-CCCTT-HH
T ss_pred HHHHHHHHHHHHHhcC---------CCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcchhhhc-cccCc-HH
Confidence 3567888888887654 2456889999999999999999999999999999999999988754 22221 23
Q ss_pred HHhhhhcccccCCCCCCCcEEEEccCCCCccc----hhHHHHHHHHHHHHHHHHhhcchhhhhhhCCccccEEEEEeCCC
Q 025326 83 AVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDK----ASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTG 158 (254)
Q Consensus 83 ~l~~~~~~~~~g~D~~Grpv~~~~~~~~~~~~----~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~IiD~~g 158 (254)
.+.+..+.+++|+|++||||++++++.++++. .+.+++++++++.+|...+..++.++...+.+++++++|+|++|
T Consensus 99 ~~~~~~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~g 178 (296)
T 1aua_A 99 LIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKG 178 (296)
T ss_dssp HHGGGSCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTT
T ss_pred HHHHhCCceecccCCCCCEEEEEeeccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEECCC
Confidence 45566667789999999999999999987754 46788999999999987765555566666777899999999999
Q ss_pred CCcccccc-hHHHHHHHHhhhhcCccccceEEEEcCCcchHHHHHHhcccCChhhhcceEEecCCCHhHHhhhCCCCCcc
Q 025326 159 LKLSALNQ-IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKVRQLFQLT 237 (254)
Q Consensus 159 ~~~~~~~~-~~~~k~~~~~~~~~yP~rl~~i~vvN~p~~~~~~~~~vk~~l~~~t~~Ki~~~~~~~~~~L~~~i~~~~LP 237 (254)
+++++++. .+.++.++.++|++||+|++++||||+|++|+++|+++||||+++|++||+++++++.++|.++||+++||
T Consensus 179 ~s~~~~~~~~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~~LP 258 (296)
T 1aua_A 179 ISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLP 258 (296)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCSCCHHHHTTTSCSSSSB
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcceEEEeCcccHHHHHhhCCHhhCc
Confidence 99999875 46789999999999999999999999999999999999999999999999999876788999999999999
Q ss_pred cccCCCccccc
Q 025326 238 FLSAHSCNRLT 248 (254)
Q Consensus 238 ~~~GG~~~~~~ 248 (254)
++|||++++..
T Consensus 259 ~~yGG~~~~~~ 269 (296)
T 1aua_A 259 VKFGGKSEVDE 269 (296)
T ss_dssp GGGTSCBCCCG
T ss_pred HHhCCCCCCCC
Confidence 99999998876
No 2
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=100.00 E-value=2.5e-50 Score=342.74 Aligned_cols=236 Identities=25% Similarity=0.380 Sum_probs=201.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHhhhhcCCCChHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhCCcchhccCCCCCHH----
Q 025326 4 QEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNILAKPILPAE---- 79 (254)
Q Consensus 4 ~~~~~~lr~~~~~~~~~l~~~~~~~~~~~~d~~llRfL~a~~~dv~ka~~~l~~~~~wR~~~~~d~~~~~~~~~~~---- 79 (254)
++++++||+++++.+ .+...||.+|+|||||++||+++|.++|+++++||+++++|+++.+...+.+
T Consensus 40 ~~~l~~lR~~l~~~~---------~~~~~dD~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~~~~~~~~ 110 (320)
T 3q8g_A 40 EEALLQFRSILLEKN---------YKERLDDSTLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDK 110 (320)
T ss_dssp HHHHHHHHHHHHHTT---------CCSSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHhcC---------CCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCccccccccccccccchh
Confidence 467888888888664 2346889999999999999999999999999999999999988753111111
Q ss_pred HHHHHhhhhcccccCCCCCCCcEEEEccCCCCccc----hhHHHHHHHHHHHHHHHHhhcchhhhhhhCCccccEEEEEe
Q 025326 80 LYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDK----ASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLD 155 (254)
Q Consensus 80 ~~~~l~~~~~~~~~g~D~~Grpv~~~~~~~~~~~~----~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~IiD 155 (254)
-...+.+.++.+++|+|++||||+|+++|.++++. .+.+++++++++.+|...+..++.++...+..++++++|+|
T Consensus 111 e~~~~~~~~~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~~IiD 190 (320)
T 3q8g_A 111 ERIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLD 190 (320)
T ss_dssp HHHHHHTTSCEEEEEECTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEE
T ss_pred HHHHHHHhCCceecCCCCCcCEEEEEeccccCHHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeEEEEE
Confidence 12345667778889999999999999999988764 36678899999999987765555566666777899999999
Q ss_pred CCCCCcccccc-hHHHHHHHHhhhhcCccccceEEEEcCCcchHHHHHHhcccCChhhhcceEEecCCCHhHHhhhCCCC
Q 025326 156 MTGLKLSALNQ-IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKVRQLF 234 (254)
Q Consensus 156 ~~g~~~~~~~~-~~~~k~~~~~~~~~yP~rl~~i~vvN~p~~~~~~~~~vk~~l~~~t~~Ki~~~~~~~~~~L~~~i~~~ 234 (254)
++|+++++++. ++.++.++.++|++||+|++++||||+|++|+.+|+++||||+++|++||+++++++.++|.++||++
T Consensus 191 ~~g~sl~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~ 270 (320)
T 3q8g_A 191 LKGISLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPIE 270 (320)
T ss_dssp CTTCCHHHHHHTHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCTTHHHHHHHHSCGG
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCCCcHHHHHhhCChh
Confidence 99999999864 46789999999999999999999999999999999999999999999999998865578999999999
Q ss_pred CcccccCCCccccc
Q 025326 235 QLTFLSAHSCNRLT 248 (254)
Q Consensus 235 ~LP~~~GG~~~~~~ 248 (254)
+||++|||+++|..
T Consensus 271 ~LP~~yGG~~~~~~ 284 (320)
T 3q8g_A 271 NLPVKYGGTSVLHN 284 (320)
T ss_dssp GSBGGGTSCBCCSS
T ss_pred hCChhhCCCCCCCC
Confidence 99999999999843
No 3
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=100.00 E-value=2.3e-48 Score=330.54 Aligned_cols=231 Identities=14% Similarity=0.214 Sum_probs=191.1
Q ss_pred HHHHHHHHHHHHhhhH---HHHHHhhhhcCCCChHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhCCcchhccCCCCCHHH
Q 025326 4 QEEIKQFQTLMEDLDD---SLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNILAKPILPAEL 80 (254)
Q Consensus 4 ~~~~~~lr~~~~~~~~---~l~~~~~~~~~~~~d~~llRfL~a~~~dv~ka~~~l~~~~~wR~~~~~d~~~~~~~~~~~~ 80 (254)
++++++||+|++++++ .+..+++......||.+|+|||||++||+++|.++|.++++||++++ +++ +++++.++
T Consensus 59 ~~~l~~LR~wi~~~p~l~~~l~~~~~~~~~~~dD~~LlRFLRarkfdv~kA~~~L~~~l~wR~~~~--~~~-~~~~~~~i 135 (316)
T 3hx3_A 59 EEAVRELQEMVQAQAASGEELAVAVAERVQEKDSGFFLRFIRARKFNVGRAYELLRGYVNFRLQYP--ELF-DSLSPEAV 135 (316)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCG--GGT-TTCCHHHH
T ss_pred HHHHHHHHHHHHhCCCccccccccccccCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCc--hhh-cCCCHHHH
Confidence 3456666666665543 12111000113579999999999999999999999999999999996 333 33556677
Q ss_pred HHHHhhhhcccccCCCCCCCcEEEEccCCCCccchhHHHHHHHHHHHHHHHHhhcchhhhhhhCCccccEEEEEeCCCCC
Q 025326 81 YRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLK 160 (254)
Q Consensus 81 ~~~l~~~~~~~~~g~D~~Grpv~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~IiD~~g~~ 160 (254)
.+.++.+.+.+++|+|++||||++++++.++++..+.+++++++++++|.... ..+.+++|+++|+|++|++
T Consensus 136 ~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~~~~~~~~r~~~~~lE~~l~--------~~~~~v~g~v~IiD~~g~s 207 (316)
T 3hx3_A 136 RCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEITFDEILQAYCFILEKLLE--------NEETQINGFCIIENFKGFT 207 (316)
T ss_dssp HHHHHTTSSEECSSCCTTSCEEEEEECTTCCTTTSCHHHHHHHHHHHHHHHTT--------SHHHHHHCEEEEEECTTCC
T ss_pred HHHHHcCCccccCCCCCCCCEEEEEecccCCCCCCCHHHHHHHHHHHHHHHHh--------cccCCcceEEEEEECCCCC
Confidence 66777777788899999999999999999999888889999999999887542 1223568999999999999
Q ss_pred ccccc--chHHHHHHHHhhhhcCccccceEEEEcCCcchHHHHHHhcccCChhhhcceEEecCCCHhHHhhhCCCCCccc
Q 025326 161 LSALN--QIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKVRQLFQLTF 238 (254)
Q Consensus 161 ~~~~~--~~~~~k~~~~~~~~~yP~rl~~i~vvN~p~~~~~~~~~vk~~l~~~t~~Ki~~~~~~~~~~L~~~i~~~~LP~ 238 (254)
++++. ..+.++.++.++|++||+|++++||||+|++|+.+|+++||||+++|++||+++++ +.++|.++||+++||+
T Consensus 208 l~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~~~-~~~~L~~~I~~~~LP~ 286 (316)
T 3hx3_A 208 MQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGD-DLSGFYQEIDENILPS 286 (316)
T ss_dssp HHHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEEET-CCHHHHHHSCGGGSBG
T ss_pred HHHhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEeCC-CHHHHHhhCCHhhCcH
Confidence 99874 24679999999999999999999999999999999999999999999999999764 4689999999999999
Q ss_pred ccCCCccc
Q 025326 239 LSAHSCNR 246 (254)
Q Consensus 239 ~~GG~~~~ 246 (254)
+|||++++
T Consensus 287 eyGG~~~~ 294 (316)
T 3hx3_A 287 DFGGTLPK 294 (316)
T ss_dssp GGTSSBCC
T ss_pred hhCCCCCC
Confidence 99999985
No 4
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=100.00 E-value=3.7e-48 Score=321.89 Aligned_cols=227 Identities=17% Similarity=0.226 Sum_probs=192.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHhhhhcCCCChHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhCCcchhccCCCCCHHHHHH
Q 025326 4 QEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNILAKPILPAELYRA 83 (254)
Q Consensus 4 ~~~~~~lr~~~~~~~~~l~~~~~~~~~~~~d~~llRfL~a~~~dv~ka~~~l~~~~~wR~~~~~d~~~~~~~~~~~~~~~ 83 (254)
++++++||+++++... ...+...+|.+|+|||||++||+++|.++|.++++||++++ ++. .++++.++.+.
T Consensus 9 ~~~l~~lr~~l~~~~~------~~~~~~~dd~~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~--~i~-~~~~~~~~~~~ 79 (262)
T 1r5l_A 9 QPGLAALRRRAREAGV------PLAPLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECP--EIS-ADLHPRSIIGL 79 (262)
T ss_dssp CTTHHHHHHHHHHHTC------CCSSSCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCH--HHH-SCCCGGGTHHH
T ss_pred HHHHHHHHHHHHhCCc------ccCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCh--Hhh-hcCChHHHHHH
Confidence 4578888888876542 01245689999999999999999999999999999999985 333 23456666666
Q ss_pred HhhhhcccccCCCCCCCcEEEEccCCCCccchhHHHHHHHHHHHHHHHHhhcchhhhhhhCCccccEEEEEeCCCCCccc
Q 025326 84 VRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSA 163 (254)
Q Consensus 84 l~~~~~~~~~g~D~~Grpv~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~IiD~~g~~~~~ 163 (254)
+..+...+++|+|++||||++++++.++++..+..+++++.++++|.... + .+.++.|+++|+|++|+++++
T Consensus 80 ~~~g~~~~l~g~D~~GrpV~i~~~~~~d~~~~~~~~~~r~~~~~~E~~~~---~-----~~~~~~g~~~I~D~~g~s~~~ 151 (262)
T 1r5l_A 80 LKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQ---E-----VETQRNGIKAIFDLEGWQFSH 151 (262)
T ss_dssp HHTTCEEECSSCCTTCCEEEEEEGGGCCTTTSCHHHHHHHHHHHHHHHTT---S-----HHHHHHCEEEEEECTTCCHHH
T ss_pred HHcCCccCCCCcCCCCCEEEEEeccccCcccCCHHHHHHHHHHHHHHHHh---C-----hhhcccceEEEEECCCCCHHH
Confidence 77777778899999999999999999998877888899999998887432 1 112357899999999999999
Q ss_pred ccc--hHHHHHHHHhhhhcCccccceEEEEcCCcchHHHHHHhcccCChhhhcceEEecCCCHhHHhhhCCCCCcccccC
Q 025326 164 LNQ--IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKVRQLFQLTFLSA 241 (254)
Q Consensus 164 ~~~--~~~~k~~~~~~~~~yP~rl~~i~vvN~p~~~~~~~~~vk~~l~~~t~~Ki~~~~~~~~~~L~~~i~~~~LP~~~G 241 (254)
++. .+.++.++.++|++||+|++++||||+|++|+.+|+++||||+++|++||++++++..++|.++|| ++||++||
T Consensus 152 ~~~~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~~~~~~~L~~~i~-~~LP~~yG 230 (262)
T 1r5l_A 152 AFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFP-DILPLEYG 230 (262)
T ss_dssp HHHCCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCSSCHHHHHHHST-TTSCGGGT
T ss_pred HhccCHHHHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeCCCcHHHHHHHhh-hhCcHhhC
Confidence 753 578999999999999999999999999999999999999999999999999987666799999999 99999999
Q ss_pred CCccccc
Q 025326 242 HSCNRLT 248 (254)
Q Consensus 242 G~~~~~~ 248 (254)
|+++...
T Consensus 231 G~~~~~~ 237 (262)
T 1r5l_A 231 GEEFSME 237 (262)
T ss_dssp CSSCCHH
T ss_pred CCCCCHH
Confidence 9997644
No 5
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=100.00 E-value=4.2e-47 Score=333.56 Aligned_cols=232 Identities=26% Similarity=0.390 Sum_probs=195.7
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHhhhhcCCCChHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhCCcchhccCCCCCHHHHH
Q 025326 3 HQEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNILAKPILPAELYR 82 (254)
Q Consensus 3 ~~~~~~~lr~~~~~~~~~l~~~~~~~~~~~~d~~llRfL~a~~~dv~ka~~~l~~~~~wR~~~~~d~~~~~~~~~~~~~~ 82 (254)
.++++++||+++++.... ++ ..+|.+|+|||||++||+++|.++|+++++||+++++|+++. ...+ +.
T Consensus 12 q~~~l~~lr~~l~~~~~~-------l~-~~dD~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~-~~~~-~~-- 79 (403)
T 1olm_A 12 QKEALAKFRENVQDVLPA-------LP-NPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIIS-WQPP-EV-- 79 (403)
T ss_dssp HHHHHHHHHHHHGGGGGG-------SS-CCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGG-SCCC-HH--
T ss_pred HHHHHHHHHHHHHhhccC-------CC-CCChhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCcccc-cCCH-HH--
Confidence 356788888888765311 12 578999999999999999999999999999999999998876 2223 32
Q ss_pred HHhhhhcccccCCCCCCCcEEEEccCCCCcc----chhHHHHHHHHHHHHHHHHhhcchhhhhhhCCccccEEEEEeCCC
Q 025326 83 AVRDSQLVGVSGYSKEGLPVIAVGVGLSTHD----KASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTG 158 (254)
Q Consensus 83 ~l~~~~~~~~~g~D~~Grpv~~~~~~~~~~~----~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~IiD~~g 158 (254)
++.....+++|+|++||||++++++.++++ ..+.+++++++++++|...+. ++..+...+.++.|+++|+|++|
T Consensus 80 -~~~~~~~~~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~-~~~~s~~~g~~v~~~~~I~D~~g 157 (403)
T 1olm_A 80 -IQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQE-CAHQTTKLGRKVETITIIYDCEG 157 (403)
T ss_dssp -HHHHCCBEEEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHH-HHHHHHHHTSCCCCEEEEEECTT
T ss_pred -HHHhCCceeeccCCCcCEEEEEecCCCChHHhhccCCHHHHHHHHHHHHHHHHHH-HHhhHHhhCCcccceEEEEECCC
Confidence 233345567899999999999999998876 357789999999999987763 33344445667899999999999
Q ss_pred CCcccccc--hHHHHHHHHhhhhcCccccceEEEEcCCcchHHHHHHhcccCChhhhcceEEecCCCHhHHhhhCCCCCc
Q 025326 159 LKLSALNQ--IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKVRQLFQL 236 (254)
Q Consensus 159 ~~~~~~~~--~~~~k~~~~~~~~~yP~rl~~i~vvN~p~~~~~~~~~vk~~l~~~t~~Ki~~~~~~~~~~L~~~i~~~~L 236 (254)
+++++++. ++.++.++.++|++||+|++++||||+|++|..+|+++||||+++|++||+++++++.++|.++||+++|
T Consensus 158 ~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~I~~~~L 237 (403)
T 1olm_A 158 LGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQV 237 (403)
T ss_dssp CCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCTTHHHHHTTTSCGGGS
T ss_pred CCHHHHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEEChhHHHHHHhhcChhhC
Confidence 99999853 5678999999999999999999999999999999999999999999999999876556799999999999
Q ss_pred ccccCCCccccc
Q 025326 237 TFLSAHSCNRLT 248 (254)
Q Consensus 237 P~~~GG~~~~~~ 248 (254)
|++|||+++++.
T Consensus 238 P~~yGG~~~~~~ 249 (403)
T 1olm_A 238 PVEYGGTMTDPD 249 (403)
T ss_dssp BGGGTSSBCCTT
T ss_pred chhhCCCcCCCC
Confidence 999999998753
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=99.37 E-value=5.1e-13 Score=109.34 Aligned_cols=136 Identities=13% Similarity=0.035 Sum_probs=108.4
Q ss_pred hhhhcccccCCCCCCCcEEEEccCCCCccchhHHHHHHHHHHHHHHHHhhcchhhhhhhCCccccEEEEEeCCCCCcccc
Q 025326 85 RDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSAL 164 (254)
Q Consensus 85 ~~~~~~~~~g~D~~Grpv~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~IiD~~g~~~~~~ 164 (254)
......+-.|.|++|+||+++..++......+.+.++.+.+..++. . -.....+|+|+.|++..+.
T Consensus 8 ~~~~ify~~G~d~dGrpViv~~~~~l~~~~~D~e~Ll~~vl~tl~~-----------~---~~~~y~lV~d~T~~~~~n~ 73 (256)
T 3pg7_A 8 KTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKP-----------Y---YAKPYEIVVDLTHTGPSNR 73 (256)
T ss_dssp HHHTSEEEEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHHTT-----------T---TTSCEEEEEECTTCCGGGC
T ss_pred HHcCCEEEcCcCCCCCEEEEEEeecCCCCCCCHHHHHHHHHHHHHH-----------h---cCCCeEEEEECCCCCcccC
Confidence 3344556669999999999999998876666766666554433221 1 1246899999999999888
Q ss_pred cchHHHHHHHHhhhhcCccccceEEEEcCCcchHHHHHH-hcccCChhhhcceEEecCCCHhHHhhhCCCCCc
Q 025326 165 NQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKV-VKPLLQERTRRKMQVLQGNGRDELLKVRQLFQL 236 (254)
Q Consensus 165 ~~~~~~k~~~~~~~~~yP~rl~~i~vvN~p~~~~~~~~~-vk~~l~~~t~~Ki~~~~~~~~~~L~~~i~~~~L 236 (254)
+..++++.+.+++...|...++++|++||+++++..++. .+++.+.+..+|++++++ .++|.++|+.++|
T Consensus 74 p~~~wl~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~s--l~eL~~~i~~~~L 144 (256)
T 3pg7_A 74 FKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC--PGKLAEHIEHEQQ 144 (256)
T ss_dssp CCHHHHHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESS--TTGGGGTSCGGGC
T ss_pred CcHHHHHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEECC--HHHHHhhcCHHHc
Confidence 778899999999999999999999999999999976665 466777788899999885 8999999987665
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=99.18 E-value=1.8e-11 Score=101.64 Aligned_cols=135 Identities=12% Similarity=0.013 Sum_probs=98.6
Q ss_pred hhhcccccCCCCCCCcEEEEccCCCCccchhHHHHHHHHHHHHHHHHhhcchhhhhhhCCccccEEEEEeCCCCCccccc
Q 025326 86 DSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALN 165 (254)
Q Consensus 86 ~~~~~~~~g~D~~Grpv~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~IiD~~g~~~~~~~ 165 (254)
.....+-.|.|++|+||+++..++.+....+.+.++.+.+..++. . -.....+|+|+++++..+-+
T Consensus 28 ~~~~f~~~g~d~dG~PViv~~~~~~~~~~~D~e~Lly~il~tl~~-----------~---~~~~y~lV~D~T~~~~~n~p 93 (290)
T 3peg_A 28 TLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKP-----------Y---YAKPYEIVVDLTHTGPSNRF 93 (290)
T ss_dssp GTTTEEEEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHHTT-----------T---TTSCEEEEEECTTCCGGGCC
T ss_pred cCCeEEEeccCCCCCEEEEEEeecCCccCCCHHHHHHHHHHHHHH-----------h---cCCCeEEEEEcCCCCccCCC
Confidence 444455568999999999999999877666766666444432211 1 12479999999999998877
Q ss_pred chHHHHHHHHhhhhcCccccceEEEEcCCcchHHHH-HHhcccCChhhhcceEEecCCCHhHHhhhCCCCCc
Q 025326 166 QIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACW-KVVKPLLQERTRRKMQVLQGNGRDELLKVRQLFQL 236 (254)
Q Consensus 166 ~~~~~k~~~~~~~~~yP~rl~~i~vvN~p~~~~~~~-~~vk~~l~~~t~~Ki~~~~~~~~~~L~~~i~~~~L 236 (254)
..++++.+.+++...|+..++++|++|||.+++..+ ...+++.+.+..+|+.++++ ...|.++++.+++
T Consensus 94 ~~~~l~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~--~~~L~~~i~~~~~ 163 (290)
T 3peg_A 94 KTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC--PGKLAEHIEHEQQ 163 (290)
T ss_dssp CHHHHGGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESS--SCC----------
T ss_pred hHHHHHHHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCC--HHHHHhhCCHHHh
Confidence 788999999999999999999999999998888654 57788888899999998764 4668888877644
No 8
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=93.40 E-value=0.17 Score=30.88 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=24.3
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHHHH
Q 025326 31 GNPTDTLVRFLKARDWNVSKAHKMLVD 57 (254)
Q Consensus 31 ~~~d~~llRfL~a~~~dv~ka~~~l~~ 57 (254)
..+...+..-|+++++|++.|+..|.+
T Consensus 22 ~ld~~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 22 NMDQEVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp SSCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 578889999999999999999999865
No 9
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=91.93 E-value=0.35 Score=27.69 Aligned_cols=24 Identities=21% Similarity=0.472 Sum_probs=19.9
Q ss_pred CCCh-HHHHHHHhhcCCCHHHHHHH
Q 025326 31 GNPT-DTLVRFLKARDWNVSKAHKM 54 (254)
Q Consensus 31 ~~~d-~~llRfL~a~~~dv~ka~~~ 54 (254)
+.+| .....||.+++||++.|+..
T Consensus 17 G~~d~~~A~~~Lea~nWDLe~Av~~ 41 (45)
T 3e21_A 17 GIENIDEAITLLEQNNWDLVAAING 41 (45)
T ss_dssp CCCCHHHHHHHHHHTTTCHHHHHTT
T ss_pred CCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 3666 78899999999999999753
No 10
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=89.56 E-value=0.66 Score=29.31 Aligned_cols=27 Identities=4% Similarity=0.102 Sum_probs=24.4
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHHHH
Q 025326 31 GNPTDTLVRFLKARDWNVSKAHKMLVD 57 (254)
Q Consensus 31 ~~~d~~llRfL~a~~~dv~ka~~~l~~ 57 (254)
++.+.++.++|..++.|++.++..|.+
T Consensus 26 dLG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 26 DLGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp SSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 588999999999999999999998844
No 11
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=88.52 E-value=1 Score=24.60 Aligned_cols=25 Identities=20% Similarity=0.155 Sum_probs=21.1
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHH
Q 025326 31 GNPTDTLVRFLKARDWNVSKAHKML 55 (254)
Q Consensus 31 ~~~d~~llRfL~a~~~dv~ka~~~l 55 (254)
+++.....+.|+++++|+++|...|
T Consensus 15 Gf~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 15 GFDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5777778899999999999998754
No 12
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.49 E-value=0.95 Score=28.30 Aligned_cols=28 Identities=18% Similarity=0.137 Sum_probs=24.9
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHHHHH
Q 025326 31 GNPTDTLVRFLKARDWNVSKAHKMLVDC 58 (254)
Q Consensus 31 ~~~d~~llRfL~a~~~dv~ka~~~l~~~ 58 (254)
..|...+..-|+++++|++.|++.|.+.
T Consensus 31 ~lD~~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 31 NMDYDIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp SSCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 5788899999999999999999998664
No 13
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=88.25 E-value=1.4 Score=26.24 Aligned_cols=28 Identities=21% Similarity=0.110 Sum_probs=22.6
Q ss_pred CCChH-HHHHHHhhcCCCHHHHHHHHHHH
Q 025326 31 GNPTD-TLVRFLKARDWNVSKAHKMLVDC 58 (254)
Q Consensus 31 ~~~d~-~llRfL~a~~~dv~ka~~~l~~~ 58 (254)
+++|. -.++-|++.++|+++|+..|...
T Consensus 20 GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 20 GFLNREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp TCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 56554 46999999999999999888654
No 14
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=87.77 E-value=1.2 Score=25.97 Aligned_cols=28 Identities=11% Similarity=0.071 Sum_probs=24.4
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHHHHH
Q 025326 31 GNPTDTLVRFLKARDWNVSKAHKMLVDC 58 (254)
Q Consensus 31 ~~~d~~llRfL~a~~~dv~ka~~~l~~~ 58 (254)
..+-..+.+.|..+++|+++|.+.|.+.
T Consensus 17 ~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 17 AISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp SSCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 4677789999999999999999998764
No 15
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=86.87 E-value=2.6 Score=27.32 Aligned_cols=43 Identities=19% Similarity=0.312 Sum_probs=32.8
Q ss_pred HHHhhhHHHHHHhhhhcCCCChHHHHHHHhhcCCCHHHHHHHHHHH
Q 025326 13 LMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDC 58 (254)
Q Consensus 13 ~~~~~~~~l~~~~~~~~~~~~d~~llRfL~a~~~dv~ka~~~l~~~ 58 (254)
.|..+.+.+|.. +-+.++|..|.+-...++||++||...+.+.
T Consensus 33 rL~SCLd~iR~V---lGdsV~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 33 RLYSCLDHMREV---LGDAVPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HHHHHHHHHHHH---TTTTSCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HcccCCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 445555555553 3456889999999999999999999988654
No 16
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=85.04 E-value=1.7 Score=24.65 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=21.6
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHH
Q 025326 31 GNPTDTLVRFLKARDWNVSKAHKML 55 (254)
Q Consensus 31 ~~~d~~llRfL~a~~~dv~ka~~~l 55 (254)
+.+......||.+++||++.|...+
T Consensus 17 g~~~~~A~~~L~~~~wdle~Ai~~f 41 (46)
T 1v92_A 17 GAEEDRARFFLESAGWDLQIALASF 41 (46)
T ss_dssp CCCHHHHHHHHHHTTSCSHHHHHHH
T ss_pred CcCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4577889999999999999998765
No 17
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=85.02 E-value=2.6 Score=26.24 Aligned_cols=27 Identities=22% Similarity=0.096 Sum_probs=21.7
Q ss_pred CCC-hHHHHHHHhhcCCCHHHHHHHHHH
Q 025326 31 GNP-TDTLVRFLKARDWNVSKAHKMLVD 57 (254)
Q Consensus 31 ~~~-d~~llRfL~a~~~dv~ka~~~l~~ 57 (254)
.+. +..-++-|++.++|+++|++.|..
T Consensus 30 GF~d~~an~~AL~at~Gnve~Ave~L~~ 57 (67)
T 2dna_A 30 GFVNYNANLQALIATDGDTNAAIYKLKS 57 (67)
T ss_dssp TCCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 454 445599999999999999888754
No 18
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=84.31 E-value=2.6 Score=25.43 Aligned_cols=27 Identities=26% Similarity=0.194 Sum_probs=22.0
Q ss_pred CC-ChHHHHHHHhhcCCCHHHHHHHHHH
Q 025326 31 GN-PTDTLVRFLKARDWNVSKAHKMLVD 57 (254)
Q Consensus 31 ~~-~d~~llRfL~a~~~dv~ka~~~l~~ 57 (254)
.+ ++...++-|++.++|+++|++.|..
T Consensus 28 GF~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 28 GFFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 45 4556699999999999999988754
No 19
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=82.93 E-value=3.2 Score=26.43 Aligned_cols=26 Identities=31% Similarity=0.349 Sum_probs=21.4
Q ss_pred CC-ChHHHHHHHhhcCCCHHHHHHHHH
Q 025326 31 GN-PTDTLVRFLKARDWNVSKAHKMLV 56 (254)
Q Consensus 31 ~~-~d~~llRfL~a~~~dv~ka~~~l~ 56 (254)
++ ++...++-|++.++|+++|+..|.
T Consensus 40 GF~dr~~~~~AL~~t~Gnve~Ave~L~ 66 (74)
T 1vej_A 40 GFANRDANLQALVATDGDIHAAIEMLL 66 (74)
T ss_dssp TCCCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 45 456679999999999999988874
No 20
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=82.53 E-value=2.6 Score=25.98 Aligned_cols=41 Identities=10% Similarity=0.019 Sum_probs=29.8
Q ss_pred chHHHHHHHHHHHHhhhHHHHHHhhhhcCCCChHHHHHHHhhcCCCHHHHHHHHHHH
Q 025326 2 AHQEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDC 58 (254)
Q Consensus 2 ~~~~~~~~lr~~~~~~~~~l~~~~~~~~~~~~d~~llRfL~a~~~dv~ka~~~l~~~ 58 (254)
++.+.|++||+... ..-...-+-|..+++|+++|+..|++.
T Consensus 8 it~~~Vk~LRe~TG----------------ag~~dcKkAL~e~~GDi~~Ai~~Lr~k 48 (64)
T 2cp9_A 8 SSKELLMKLRRKTG----------------YSFVNCKKALETCGGDLKQAEIWLHKE 48 (64)
T ss_dssp CCCHHHHHHHHHHC----------------CCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhC----------------CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 45567777777654 344456677888999999999988754
No 21
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.48 E-value=3.2 Score=25.35 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=21.7
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHH
Q 025326 31 GNPTDTLVRFLKARDWNVSKAHKML 55 (254)
Q Consensus 31 ~~~d~~llRfL~a~~~dv~ka~~~l 55 (254)
..+......||.+++||++.|+..+
T Consensus 27 g~~~~~A~~~Le~~~WnLe~Av~~f 51 (62)
T 2dal_A 27 GASESVGKHMLEACNNNLEMAVTMF 51 (62)
T ss_dssp CCCHHHHHHHHHTTTSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4667889999999999999998765
No 22
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=81.43 E-value=4.8 Score=26.21 Aligned_cols=28 Identities=25% Similarity=0.087 Sum_probs=23.3
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHHHHH
Q 025326 31 GNPTDTLVRFLKARDWNVSKAHKMLVDC 58 (254)
Q Consensus 31 ~~~d~~llRfL~a~~~dv~ka~~~l~~~ 58 (254)
+++.....+-|+++++|+++|+.-|..+
T Consensus 40 GF~~~~A~~AL~~t~gdve~A~e~L~sh 67 (83)
T 1veg_A 40 GFDTVVAEAALRVFGGNVQLAAQTLAHH 67 (83)
T ss_dssp SCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 5777888889999999999998887655
No 23
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=80.63 E-value=3.4 Score=24.23 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=21.8
Q ss_pred CC-ChHHHHHHHhhcCCCHHHHHHHHH
Q 025326 31 GN-PTDTLVRFLKARDWNVSKAHKMLV 56 (254)
Q Consensus 31 ~~-~d~~llRfL~a~~~dv~ka~~~l~ 56 (254)
++ +....++-|+++++|+++|++.|.
T Consensus 23 GF~~~~~~~~AL~~t~gn~e~A~e~L~ 49 (52)
T 2jy5_A 23 GFLNREANLQALIATGGDINAAIERLL 49 (52)
T ss_dssp TCCCHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 56 677789999999999999988763
No 24
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=80.25 E-value=3.7 Score=25.19 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=23.2
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHHHHH
Q 025326 31 GNPTDTLVRFLKARDWNVSKAHKMLVDC 58 (254)
Q Consensus 31 ~~~d~~llRfL~a~~~dv~ka~~~l~~~ 58 (254)
.++.....+-|+++++|+++|+.-|..+
T Consensus 20 GF~~~~a~~AL~~~~~nve~A~e~L~~~ 47 (63)
T 1wji_A 20 GFSKEASRQALMDNGNNLEAALNVLLTS 47 (63)
T ss_dssp TCCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 5777778889999999999998877654
No 25
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.06 E-value=6.1 Score=24.51 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=21.0
Q ss_pred CChHHHHHHHhhcCCCHHHHHHHHH
Q 025326 32 NPTDTLVRFLKARDWNVSKAHKMLV 56 (254)
Q Consensus 32 ~~d~~llRfL~a~~~dv~ka~~~l~ 56 (254)
.+......||..++||++.|+..+-
T Consensus 32 ~d~~~A~~~Le~~~WnLe~Av~~ff 56 (67)
T 2dam_A 32 ESMDQCRHTLEQHNWNIEAAVQDRL 56 (67)
T ss_dssp SCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4566889999999999999987663
No 26
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=75.17 E-value=6.9 Score=22.84 Aligned_cols=23 Identities=17% Similarity=0.411 Sum_probs=20.2
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHH
Q 025326 34 TDTLVRFLKARDWNVSKAHKMLV 56 (254)
Q Consensus 34 d~~llRfL~a~~~dv~ka~~~l~ 56 (254)
-.+|-|.|.+.++|+.+|...|.
T Consensus 26 gGWLt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 26 GGWLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp TSHHHHHHHHTTTCHHHHHHHHT
T ss_pred ccHHHHHHHHccCCHHHHHHHhh
Confidence 35999999999999999988763
No 27
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.00 E-value=7.5 Score=24.04 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=21.7
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHH
Q 025326 31 GNPTDTLVRFLKARDWNVSKAHKML 55 (254)
Q Consensus 31 ~~~d~~llRfL~a~~~dv~ka~~~l 55 (254)
+.++.....||.+.+||++.|...+
T Consensus 29 g~~~~~A~~~Le~~~WdLe~Al~~f 53 (66)
T 2dzl_A 29 GCAADQAKQLLQAAHWQFETALSTF 53 (66)
T ss_dssp CCCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4677889999999999999998765
No 28
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=74.27 E-value=8 Score=24.43 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=18.8
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHHH
Q 025326 31 GNPTDTLVRFLKARDWNVSKAHKMLV 56 (254)
Q Consensus 31 ~~~d~~llRfL~a~~~dv~ka~~~l~ 56 (254)
+++.....+-|+++++|+++|+.-|.
T Consensus 40 GF~~~~a~~AL~~t~~nve~Ave~L~ 65 (73)
T 1wiv_A 40 GFAEDVARKALKASGGDIEKATDWVF 65 (73)
T ss_dssp TCCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 46666777777888888888876654
No 29
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=73.98 E-value=7 Score=22.91 Aligned_cols=28 Identities=18% Similarity=0.172 Sum_probs=23.7
Q ss_pred CCC-ChHHHHHHHhhcCCCHHHHHHHHHH
Q 025326 30 QGN-PTDTLVRFLKARDWNVSKAHKMLVD 57 (254)
Q Consensus 30 ~~~-~d~~llRfL~a~~~dv~ka~~~l~~ 57 (254)
-++ +.....+-|+++++|+++|+..|..
T Consensus 21 MGF~~~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 21 MGFINREANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp TTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 367 7778899999999999999988754
No 30
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=73.46 E-value=4.4 Score=27.84 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=22.5
Q ss_pred CCC-hHHHHHHHhhcCCCHHHHHHHHHH
Q 025326 31 GNP-TDTLVRFLKARDWNVSKAHKMLVD 57 (254)
Q Consensus 31 ~~~-d~~llRfL~a~~~dv~ka~~~l~~ 57 (254)
++. +...++-|++.++|+++|++.|.+
T Consensus 77 GF~d~~~ni~AL~~t~Gdve~AVe~L~~ 104 (108)
T 2cwb_A 77 GIQDDELSLRALQATGGDIQAALELIFA 104 (108)
T ss_dssp TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 454 468899999999999999998854
No 31
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.80 E-value=13 Score=22.54 Aligned_cols=28 Identities=18% Similarity=0.293 Sum_probs=22.9
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHHHHH
Q 025326 31 GNPTDTLVRFLKARDWNVSKAHKMLVDC 58 (254)
Q Consensus 31 ~~~d~~llRfL~a~~~dv~ka~~~l~~~ 58 (254)
+++.....+-|+++++|+++|+.-|..+
T Consensus 20 GF~~~~a~~AL~~t~~nve~A~e~L~~~ 47 (63)
T 2dak_A 20 GFSRDQALKALRATNNSLERAVDWIFSH 47 (63)
T ss_dssp TCCHHHHHHHHHHTTSCSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4677778888999999999998887665
No 32
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=65.35 E-value=8 Score=22.23 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=23.4
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHHHH
Q 025326 31 GNPTDTLVRFLKARDWNVSKAHKMLVD 57 (254)
Q Consensus 31 ~~~d~~llRfL~a~~~dv~ka~~~l~~ 57 (254)
+++.....+-|+++++|+++|+..|..
T Consensus 19 GF~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 19 GYERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp TCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 678888999999999999999887754
No 33
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=64.22 E-value=7.8 Score=22.00 Aligned_cols=26 Identities=27% Similarity=0.134 Sum_probs=21.2
Q ss_pred CCC-hHHHHHHHhhcCCCHHHHHHHHH
Q 025326 31 GNP-TDTLVRFLKARDWNVSKAHKMLV 56 (254)
Q Consensus 31 ~~~-d~~llRfL~a~~~dv~ka~~~l~ 56 (254)
++. +.-.++-|++.++|+++|+..|.
T Consensus 18 GF~d~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 18 GFFDFDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp TCCCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 554 45579999999999999998764
No 34
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=62.65 E-value=19 Score=20.39 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=27.8
Q ss_pred hhcCCCChHHHHHHHhhcCCCHHHHHHHHHHH
Q 025326 27 NVHQGNPTDTLVRFLKARDWNVSKAHKMLVDC 58 (254)
Q Consensus 27 ~~~~~~~d~~llRfL~a~~~dv~ka~~~l~~~ 58 (254)
....+++.....|-|-..+.|++.|...|.++
T Consensus 11 L~s~Gf~~~~~~rAL~ia~Nnie~A~nIL~ef 42 (46)
T 2oo9_A 11 LMSQGYSYQDIQKALVIAQNNIEMAKNILREF 42 (46)
T ss_dssp HHHTTBCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHhhccHHHHHHHHHHh
Confidence 34568999999999999999999999999865
No 35
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=61.90 E-value=16 Score=21.34 Aligned_cols=32 Identities=22% Similarity=0.248 Sum_probs=28.0
Q ss_pred hhcCCCChHHHHHHHhhcCCCHHHHHHHHHHH
Q 025326 27 NVHQGNPTDTLVRFLKARDWNVSKAHKMLVDC 58 (254)
Q Consensus 27 ~~~~~~~d~~llRfL~a~~~dv~ka~~~l~~~ 58 (254)
....+++....++-|+..++|++-|...|.++
T Consensus 18 Lm~mGFsr~~ai~AL~~a~nnve~AaniLlef 49 (52)
T 2ooa_A 18 LMGEGYAFEEVKRALEIAQNNVEVARSILREF 49 (52)
T ss_dssp HHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 34568999999999999999999999998765
No 36
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.37 E-value=22 Score=22.99 Aligned_cols=28 Identities=21% Similarity=0.385 Sum_probs=20.2
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHHHHH
Q 025326 31 GNPTDTLVRFLKARDWNVSKAHKMLVDC 58 (254)
Q Consensus 31 ~~~d~~llRfL~a~~~dv~ka~~~l~~~ 58 (254)
+++.....+-|+++++|++.|+.-|..+
T Consensus 40 GF~~~~a~~AL~~t~~nve~A~ewL~~~ 67 (83)
T 2dai_A 40 GFPENRATKALQLNHMSVPQAMEWLIEH 67 (83)
T ss_dssp TCCHHHHHHHHHHTTSCHHHHHHHHHHG
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 4666677777888888888887766543
No 37
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=60.29 E-value=10 Score=20.90 Aligned_cols=27 Identities=19% Similarity=0.409 Sum_probs=22.3
Q ss_pred CCCChHHHHHHHhhcCCCHHHHHHHHH
Q 025326 30 QGNPTDTLVRFLKARDWNVSKAHKMLV 56 (254)
Q Consensus 30 ~~~~d~~llRfL~a~~~dv~ka~~~l~ 56 (254)
-+++.....+-|+++++|+++|..-|.
T Consensus 14 MGF~~~~a~~AL~~~~~n~e~A~~~L~ 40 (43)
T 2g3q_A 14 MGFTEEEAHNALEKCNWDLEAATNFLL 40 (43)
T ss_dssp TTSCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHhCcCHHHHHHHHH
Confidence 357777888899999999999987764
No 38
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=60.25 E-value=14 Score=21.73 Aligned_cols=30 Identities=20% Similarity=0.251 Sum_probs=26.7
Q ss_pred cCCCChHHHHHHHhhcCCCHHHHHHHHHHH
Q 025326 29 HQGNPTDTLVRFLKARDWNVSKAHKMLVDC 58 (254)
Q Consensus 29 ~~~~~d~~llRfL~a~~~dv~ka~~~l~~~ 58 (254)
..+++.....|-|...++|++.|...|+++
T Consensus 18 ~lGF~r~~ai~AL~~a~nnve~Aa~iL~ef 47 (53)
T 2d9s_A 18 SQGYSYQDIQKALVIAHNNIEMAKNILREF 47 (53)
T ss_dssp HHTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 458899999999999999999999999765
No 39
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=54.76 E-value=38 Score=22.93 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=24.0
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHHHHH
Q 025326 31 GNPTDTLVRFLKARDWNVSKAHKMLVDC 58 (254)
Q Consensus 31 ~~~d~~llRfL~a~~~dv~ka~~~l~~~ 58 (254)
+++......-|..++||+++|+..|..-
T Consensus 51 G~seeeAr~AL~~~ngDl~~AI~~Lleg 78 (104)
T 1wj7_A 51 GKNQDECVIALHDCNGDVNRAINVLLEG 78 (104)
T ss_dssp CCCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 6888899999999999999998888543
No 40
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.39 E-value=38 Score=21.29 Aligned_cols=28 Identities=14% Similarity=0.125 Sum_probs=21.4
Q ss_pred CCChHHHHHHHhhcCC-CHHHHHHHHHHH
Q 025326 31 GNPTDTLVRFLKARDW-NVSKAHKMLVDC 58 (254)
Q Consensus 31 ~~~d~~llRfL~a~~~-dv~ka~~~l~~~ 58 (254)
+++.....+-|++++. |+++|+.-|..+
T Consensus 20 GF~~~~a~~AL~~t~n~~ve~A~ewL~~~ 48 (74)
T 2dag_A 20 GFPMDACRKAVYYTGNSGAEAAMNWVMSH 48 (74)
T ss_dssp SCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 5677778888888885 799888777654
No 41
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=53.70 E-value=34 Score=23.61 Aligned_cols=51 Identities=8% Similarity=0.015 Sum_probs=36.6
Q ss_pred EEEEEeCCCCCcccccchHHHHHHHHhhhhcCccccceEEEEcCCcchHHHHHHh
Q 025326 150 SLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVV 204 (254)
Q Consensus 150 ~~~IiD~~g~~~~~~~~~~~~k~~~~~~~~~yP~rl~~i~vvN~p~~~~~~~~~v 204 (254)
-.+|+|+++++.-....+..+..+.+.++ .+=..+++.|++.-+.-++...
T Consensus 49 ~~vvlDls~v~~iDssgl~~L~~~~~~~~----~~g~~l~l~~~~~~v~~~l~~~ 99 (130)
T 2kln_A 49 EWFVLNAESNVEVDLTALDALDQLRTELL----RRGIVFAMARVKQDLRESLRAA 99 (130)
T ss_dssp EEEEEECSCCSSSBCSTTTHHHHHHHHHH----TTTEEEEEECCSSHHHHHHHHC
T ss_pred eEEEEECCCCChhhHHHHHHHHHHHHHHH----HCCCEEEEEcCCHHHHHHHHHc
Confidence 47999999999877666666666665554 3457789999987766665553
No 42
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.21 E-value=28 Score=19.51 Aligned_cols=24 Identities=13% Similarity=0.173 Sum_probs=16.1
Q ss_pred CChHHHHHHHhhcCCCHHHHHHHHH
Q 025326 32 NPTDTLVRFLKARDWNVSKAHKMLV 56 (254)
Q Consensus 32 ~~d~~llRfL~a~~~dv~ka~~~l~ 56 (254)
++.....+-|++++ |++.|+.-|.
T Consensus 21 F~~~~a~~AL~~~~-n~e~A~~~L~ 44 (47)
T 2ekk_A 21 FTREHAMEALLNTS-TMEQATEYLL 44 (47)
T ss_dssp CCHHHHHHHHHHSC-SHHHHHHHHH
T ss_pred CCHHHHHHHHHHcC-CHHHHHHHHH
Confidence 55566667777775 7777776653
No 43
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=53.06 E-value=25 Score=22.83 Aligned_cols=26 Identities=27% Similarity=0.416 Sum_probs=20.6
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHHH
Q 025326 31 GNPTDTLVRFLKARDWNVSKAHKMLV 56 (254)
Q Consensus 31 ~~~d~~llRfL~a~~~dv~ka~~~l~ 56 (254)
.++.....+-|+++++|++.|+.-|.
T Consensus 32 GF~~~~a~~AL~~~n~n~e~A~ewL~ 57 (85)
T 2dkl_A 32 GFPREPAEEALKSNNMNLDQAMSALL 57 (85)
T ss_dssp TCCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 57777778888888999998877664
No 44
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=52.49 E-value=28 Score=20.52 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=27.8
Q ss_pred hhcCCCChHHHHHHHhhcCCCHHHHHHHHHHH
Q 025326 27 NVHQGNPTDTLVRFLKARDWNVSKAHKMLVDC 58 (254)
Q Consensus 27 ~~~~~~~d~~llRfL~a~~~dv~ka~~~l~~~ 58 (254)
....+++....+|-|...+.|++-|...|.++
T Consensus 14 L~smGfsr~da~~AL~ia~Ndv~~AtNiLlEf 45 (56)
T 2juj_A 14 LMSQGYSYQDIQKALVIAQNNIEMAKNILREF 45 (56)
T ss_dssp HHTTTCCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred HHHcCCCHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 45678999999999999999999999988654
No 45
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=52.40 E-value=15 Score=23.19 Aligned_cols=26 Identities=23% Similarity=0.215 Sum_probs=20.2
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHHH
Q 025326 31 GNPTDTLVRFLKARDWNVSKAHKMLV 56 (254)
Q Consensus 31 ~~~d~~llRfL~a~~~dv~ka~~~l~ 56 (254)
+++.....+-|+++++|+++|++.|.
T Consensus 40 GF~r~~a~~AL~~~~~nve~Ave~Ll 65 (73)
T 1vg5_A 40 GFDRTQVEVALAAADDDLTVAVEILM 65 (73)
T ss_dssp TCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 57777788888888888888877664
No 46
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=52.04 E-value=24 Score=20.78 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=22.3
Q ss_pred CChHHHHHHHhhcCCCHHHHHHHHHH
Q 025326 32 NPTDTLVRFLKARDWNVSKAHKMLVD 57 (254)
Q Consensus 32 ~~d~~llRfL~a~~~dv~ka~~~l~~ 57 (254)
+|...=.+-|+..++|+++|+..|..
T Consensus 22 ~D~~~N~~aL~~~~gnv~~aI~~Ll~ 47 (54)
T 2cp8_A 22 CDRQLNLRLLKKHNYNILQVVTELLQ 47 (54)
T ss_dssp CCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 46778899999999999999888754
No 47
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=51.43 E-value=29 Score=23.87 Aligned_cols=52 Identities=6% Similarity=0.003 Sum_probs=36.0
Q ss_pred EEEEEeCCCCCcccccchHHHHHHHHhhhhcCccccceEEEEcCCcchHHHHHHhc
Q 025326 150 SLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVK 205 (254)
Q Consensus 150 ~~~IiD~~g~~~~~~~~~~~~k~~~~~~~~~yP~rl~~i~vvN~p~~~~~~~~~vk 205 (254)
-.+|+|+++++.-....+..+..+.+.++ .+=..+.++|++.-+.-++.+..
T Consensus 53 ~~vvlDls~V~~iDSsGl~~L~~~~~~~~----~~g~~l~l~~~~~~v~~~l~~~g 104 (125)
T 2ka5_A 53 NKIFLVLSDVESIDSFSLGVIVNILKSIS----SSGGFFALVSPNEKVERVLSLTN 104 (125)
T ss_dssp CEEEEECTTCSCCCHHHHHHHHHHHHHHH----HHTCEEEEECCCHHHHHHHHHTT
T ss_pred CEEEEECCCCCEEcHHHHHHHHHHHHHHH----HcCCEEEEEeCCHHHHHHHHHcC
Confidence 37999999988776554555554444444 33478999999987777776653
No 48
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=51.40 E-value=24 Score=22.25 Aligned_cols=29 Identities=24% Similarity=0.200 Sum_probs=23.4
Q ss_pred hcCCCChHHHHHHHhhcCCCHHHHHHHHH
Q 025326 28 VHQGNPTDTLVRFLKARDWNVSKAHKMLV 56 (254)
Q Consensus 28 ~~~~~~d~~llRfL~a~~~dv~ka~~~l~ 56 (254)
+..--|-.+|.--|.+.++|+..|+..|.
T Consensus 34 ITGiqD~~~L~~ALkas~Gdl~~AV~~LT 62 (80)
T 1vdl_A 34 ITGINDAQILQQALKDSNGNLELAVAFLT 62 (80)
T ss_dssp HSCCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHhccCCHHHHHHHHh
Confidence 34445567899999999999999998873
No 49
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=49.45 E-value=39 Score=22.11 Aligned_cols=50 Identities=14% Similarity=0.135 Sum_probs=33.7
Q ss_pred EEEEeCCCCCcccccchHHHHHHHHhhhhcCccccceEEEEcCCcchHHHHHHh
Q 025326 151 LKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVV 204 (254)
Q Consensus 151 ~~IiD~~g~~~~~~~~~~~~k~~~~~~~~~yP~rl~~i~vvN~p~~~~~~~~~v 204 (254)
.+++|+++++.-....+..+..+.+.++ .+=..+.+.|++.-+.-++...
T Consensus 46 ~vvlDls~v~~iDssgl~~L~~~~~~~~----~~g~~l~l~~~~~~v~~~l~~~ 95 (110)
T 1sbo_A 46 KIVLDLSSVSYMDSAGLGTLVVILKDAK----INGKEFILSSLKESISRILKLT 95 (110)
T ss_dssp EEEEECTTCCCBCHHHHHHHHHHHHHHH----HTTCEEEEESCCHHHHHHHHHT
T ss_pred EEEEECCCCcEEccHHHHHHHHHHHHHH----HcCCEEEEEeCCHHHHHHHHHh
Confidence 5799999888766544444555444443 3347789999987776666654
No 50
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=48.32 E-value=44 Score=22.98 Aligned_cols=51 Identities=10% Similarity=0.044 Sum_probs=35.7
Q ss_pred EEEEEeCCCCCcccccchHHHHHHHHhhhhcCccccceEEEEcCCcchHHHHHHh
Q 025326 150 SLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVV 204 (254)
Q Consensus 150 ~~~IiD~~g~~~~~~~~~~~~k~~~~~~~~~yP~rl~~i~vvN~p~~~~~~~~~v 204 (254)
-.+|+|+++++.-....+..+..+.+.++ .+=.++++.|++.-+.-++...
T Consensus 50 ~~vvlDls~v~~iDssgl~~L~~~~~~~~----~~g~~l~l~~~~~~v~~~l~~~ 100 (130)
T 4dgh_A 50 QILILRLKWVPFMDITGIQTLEEMIQSFH----KRGIKVLISGANSRVSQKLVKA 100 (130)
T ss_dssp SEEEEECTTCCCCCHHHHHHHHHHHHHHH----TTTCEEEEECCCHHHHHHHHHT
T ss_pred CEEEEECCCCCcccHHHHHHHHHHHHHHH----HCCCEEEEEcCCHHHHHHHHHc
Confidence 47999999988766554555555555444 5667899999987766555554
No 51
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=46.24 E-value=48 Score=23.18 Aligned_cols=51 Identities=12% Similarity=0.048 Sum_probs=35.2
Q ss_pred EEEEEeCCCCCcccccchHHHHHHHHhhhhcCccccceEEEEcCCcchHHHHHHh
Q 025326 150 SLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVV 204 (254)
Q Consensus 150 ~~~IiD~~g~~~~~~~~~~~~k~~~~~~~~~yP~rl~~i~vvN~p~~~~~~~~~v 204 (254)
-.+|+|+++++.-....+..+..+.+.++ .+=..+++.|++.-+.-++...
T Consensus 65 ~~vvlDls~v~~iDssgl~~L~~~~~~~~----~~g~~l~l~~~~~~v~~~l~~~ 115 (143)
T 3llo_A 65 HTVILDFTQVNFMDSVGVKTLAGIVKEYG----DVGIYVYLAGCSAQVVNDLTSN 115 (143)
T ss_dssp SEEEEECTTCCCCCHHHHHHHHHHHHHHH----TTTCEEEEESCCHHHHHHHHHT
T ss_pred eEEEEECCCCccccHHHHHHHHHHHHHHH----HCCCEEEEEeCCHHHHHHHHhC
Confidence 47999999988766554555555554444 5667899999987666555544
No 52
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=46.04 E-value=34 Score=19.30 Aligned_cols=28 Identities=21% Similarity=0.181 Sum_probs=23.4
Q ss_pred hcCCCChHHHHHHHhhcCCCHHHHHHHH
Q 025326 28 VHQGNPTDTLVRFLKARDWNVSKAHKML 55 (254)
Q Consensus 28 ~~~~~~d~~llRfL~a~~~dv~ka~~~l 55 (254)
..-+++....++-|.++++|++.|..-|
T Consensus 12 ~~mGF~~~~a~~Al~a~~~n~e~A~~~L 39 (47)
T 1dv0_A 12 KALGFPESLVIQAYFACEKNENLAANFL 39 (47)
T ss_dssp TTTTCCHHHHHHHHTTTTSCHHHHHHHT
T ss_pred HHcCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3457888889999999999999997765
No 53
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=44.05 E-value=37 Score=27.63 Aligned_cols=40 Identities=10% Similarity=0.055 Sum_probs=29.8
Q ss_pred chHHHHHHHHHHHHhhhHHHHHHhhhhcCCCChHHHHHHHhhcCCCHHHHHHHHHH
Q 025326 2 AHQEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVD 57 (254)
Q Consensus 2 ~~~~~~~~lr~~~~~~~~~l~~~~~~~~~~~~d~~llRfL~a~~~dv~ka~~~l~~ 57 (254)
++.+.+++||+... ..=...-+-|..+++|+++|.+-|++
T Consensus 3 ~ta~~VKeLRe~TG----------------agmmdCKKAL~e~~GD~ekAie~LR~ 42 (291)
T 1xb2_B 3 SSKELLMKLRRKTG----------------YSFINCKKALETCGGDLKQAESWLHK 42 (291)
T ss_dssp HHHHHHHHHHHHHC----------------CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhC----------------CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 45677888887654 33345667788889999999999986
No 54
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=43.22 E-value=8.6 Score=31.26 Aligned_cols=32 Identities=25% Similarity=0.312 Sum_probs=24.4
Q ss_pred ccccceEEEEcCCcchHHHHHHhcccCChhhh
Q 025326 182 PEKTETYYIVNAPYIFSACWKVVKPLLQERTR 213 (254)
Q Consensus 182 P~rl~~i~vvN~p~~~~~~~~~vk~~l~~~t~ 213 (254)
...=+.++||||||.+.-..+-+-|++.+...
T Consensus 234 gm~gsGm~viNpP~~l~~~~~~~l~~l~~~l~ 265 (283)
T 2oo3_A 234 GMTGCGLWIINPPYTFPSEIKLVLETLTTYFN 265 (283)
T ss_dssp SCCEEEEEEESCCTTHHHHHHHHHHHHHHHSS
T ss_pred CcCceeEEEECCchhHHHHHHHHHHHHHHHhC
Confidence 34456799999999999888877777766443
No 55
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=43.21 E-value=52 Score=19.64 Aligned_cols=28 Identities=11% Similarity=0.346 Sum_probs=24.3
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHHHHH
Q 025326 31 GNPTDTLVRFLKARDWNVSKAHKMLVDC 58 (254)
Q Consensus 31 ~~~d~~llRfL~a~~~dv~ka~~~l~~~ 58 (254)
+..-.+-.++|..++||.++|.+...+-
T Consensus 19 gmn~~~s~~cL~~~~Wd~~~A~~~F~~l 46 (59)
T 1oai_A 19 GMNLEWSQKCLQDNNWDYTRSAQAFTHL 46 (59)
T ss_dssp CCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 5777899999999999999998887554
No 56
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=43.19 E-value=51 Score=25.11 Aligned_cols=40 Identities=23% Similarity=0.337 Sum_probs=28.7
Q ss_pred chHHHHHHHHHHHHhhhHHHHHHhhhhcCCCChHHHHHHHhhcCCCHHHHHHHHHH
Q 025326 2 AHQEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVD 57 (254)
Q Consensus 2 ~~~~~~~~lr~~~~~~~~~l~~~~~~~~~~~~d~~llRfL~a~~~dv~ka~~~l~~ 57 (254)
-+.+.+++||+... ..=...-+-|..+++|+++|..-|++
T Consensus 2 ~~a~~VKeLRe~TG----------------agmmdCKkAL~e~~GD~ekAie~LR~ 41 (196)
T 1aip_C 2 SQMELIKKLREATG----------------AGMMDVKRALEDAGWDEEKAVQLLRE 41 (196)
T ss_dssp CHHHHHHHHHHHHC----------------CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHhC----------------CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 34566777777655 33345667788899999999988876
No 57
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=42.62 E-value=49 Score=22.98 Aligned_cols=51 Identities=4% Similarity=0.032 Sum_probs=35.4
Q ss_pred EEEEEeCCCCCcccccchHHHHHHHHhhhhcCccccceEEEEcCCcchHHHHHHh
Q 025326 150 SLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVV 204 (254)
Q Consensus 150 ~~~IiD~~g~~~~~~~~~~~~k~~~~~~~~~yP~rl~~i~vvN~p~~~~~~~~~v 204 (254)
-.+|+|+++++.-....+..+..+.+.++ .+=.++++.|++.-+.-++...
T Consensus 53 ~~vvlDls~v~~iDssgl~~L~~~~~~~~----~~g~~l~l~~~~~~v~~~l~~~ 103 (135)
T 4dgf_A 53 KVFILRMRRVPVIDATGMHALWEFQESCE----KRGTILLLSGVSDRLYGALNRF 103 (135)
T ss_dssp SEEEEECTTCSCBCHHHHHHHHHHHHHHH----HHTCEEEEESCCHHHHHHHHHH
T ss_pred cEEEEEcCCCCccCHHHHHHHHHHHHHHH----HCCCEEEEEcCCHHHHHHHHHc
Confidence 47999999988766554555555555444 4557899999987666555544
No 58
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=42.08 E-value=18 Score=21.39 Aligned_cols=27 Identities=7% Similarity=-0.002 Sum_probs=18.9
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHHHH
Q 025326 31 GNPTDTLVRFLKARDWNVSKAHKMLVD 57 (254)
Q Consensus 31 ~~~d~~llRfL~a~~~dv~ka~~~l~~ 57 (254)
+.|...+-.-|++++++++.|+..+..
T Consensus 25 ~lD~evI~~Vl~a~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 25 DMDPSLIEDVCIAAASRIGPCVDALLS 51 (54)
T ss_dssp TSCHHHHHHHHHHSCC--CGGGC----
T ss_pred cCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 688889999999999999998877654
No 59
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=37.89 E-value=63 Score=19.14 Aligned_cols=27 Identities=15% Similarity=0.170 Sum_probs=24.3
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHHHH
Q 025326 31 GNPTDTLVRFLKARDWNVSKAHKMLVD 57 (254)
Q Consensus 31 ~~~d~~llRfL~a~~~dv~ka~~~l~~ 57 (254)
+..-.+-.++|...+||.++|.....+
T Consensus 18 ~Mn~e~S~~cL~~n~Wd~~~A~~~F~~ 44 (57)
T 2jp7_A 18 KLNAEYTFMLAEQSNWNYEVAIKGFQS 44 (57)
T ss_dssp CSCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 577789999999999999999998876
No 60
>3t6o_A Sulfate transporter/antisigma-factor antagonist S; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.10A {Planctomyces limnophilus}
Probab=37.20 E-value=49 Score=22.37 Aligned_cols=51 Identities=12% Similarity=0.132 Sum_probs=34.2
Q ss_pred EEEEEeCCCCCcccccchHHHHHHHHhhhhcCcc-ccceEEEEcCCcchHHHHHHh
Q 025326 150 SLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPE-KTETYYIVNAPYIFSACWKVV 204 (254)
Q Consensus 150 ~~~IiD~~g~~~~~~~~~~~~k~~~~~~~~~yP~-rl~~i~vvN~p~~~~~~~~~v 204 (254)
-.+|+|+++++.-....+..+..+.+..+ . +=..+.++|++.-+.-++.+.
T Consensus 49 ~~vvlDls~v~~iDSsGl~~L~~~~~~~~----~~~g~~l~l~~~~~~v~~~l~~~ 100 (121)
T 3t6o_A 49 RKVLIDLEGVEFFGSSFIELLVRGWKRIK----EDQQGVFALCSVSPYCVEVLQVT 100 (121)
T ss_dssp CEEEEECTTCCEECHHHHHHHHHHHHHHT----TSTTCEEEEESCCHHHHHHHTTC
T ss_pred CeEEEECCCCCEEcHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHHHHHh
Confidence 47999999988766544444444444333 3 457899999997776666554
No 61
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=34.77 E-value=58 Score=19.72 Aligned_cols=29 Identities=17% Similarity=0.303 Sum_probs=23.7
Q ss_pred cCCCChHHHHHHHhhcCCCHHHHHHHHHH
Q 025326 29 HQGNPTDTLVRFLKARDWNVSKAHKMLVD 57 (254)
Q Consensus 29 ~~~~~d~~llRfL~a~~~dv~ka~~~l~~ 57 (254)
.-++++....+-|++++.|+++|.+=|-.
T Consensus 28 sMGFs~~qA~kALKat~~NvErAaDWLFS 56 (63)
T 1wgn_A 28 NMGYSYECVLRAMKKKGENIEQILDYLFA 56 (63)
T ss_dssp HHHCCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 34688889999999999999999765543
No 62
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=32.85 E-value=62 Score=19.55 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=21.0
Q ss_pred CCChHHHHHHHhhc-CCCHHHHHHHHHHH
Q 025326 31 GNPTDTLVRFLKAR-DWNVSKAHKMLVDC 58 (254)
Q Consensus 31 ~~~d~~llRfL~a~-~~dv~ka~~~l~~~ 58 (254)
+++.....+-|+++ ++|++.|+.-|..+
T Consensus 20 GF~~~~a~~AL~~t~~~nve~A~ewLl~~ 48 (64)
T 1whc_A 20 GFPRGRAEKALALTGNQGIEAAMDWLMEH 48 (64)
T ss_dssp TCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHhC
Confidence 56677778888888 68888887777554
No 63
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=32.77 E-value=1.4e+02 Score=22.48 Aligned_cols=60 Identities=10% Similarity=0.081 Sum_probs=41.7
Q ss_pred HHHHHHhhhhcCccccceEEEEcCCcchHHHHHHhc-----ccCChhhhcceEEecCCCHhHHhhhCCC
Q 025326 170 MTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVK-----PLLQERTRRKMQVLQGNGRDELLKVRQL 233 (254)
Q Consensus 170 ~k~~~~~~~~~yP~rl~~i~vvN~p~~~~~~~~~vk-----~~l~~~t~~Ki~~~~~~~~~~L~~~i~~ 233 (254)
+.....+.|-..- -+-|.++|..-+.+.++.+++ .|++++..+.+.+.. +.+++.+.+.|
T Consensus 125 lfe~lt~~qlg~~--~kPvvlln~~gfw~~l~~~l~~~~~~Gfi~~~~~~~i~~~d--~~ee~~~~l~~ 189 (189)
T 3sbx_A 125 LLDVWTEGYLGMH--DKSIVVLDPWGHFDGLRAWLSELADTGYVSRTAMERLIVVD--NLDDALQACAP 189 (189)
T ss_dssp HHHHHHHHHTTSC--CCCEEEECTTCTTHHHHHHHHHHHHTTSSCHHHHHHEEEES--SHHHHHHHHCC
T ss_pred HHHHHHHHHhccc--CCCEEEecCCccchHHHHHHHHHHHCCCCCHHHcCeEEEeC--CHHHHHHHhcC
Confidence 3344444444432 267999999777777776543 599999999999876 48888877653
No 64
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=31.83 E-value=1.3e+02 Score=22.02 Aligned_cols=29 Identities=21% Similarity=0.098 Sum_probs=23.6
Q ss_pred CCCChHHHHHHHhhcCCCHHHHHHHHHHH
Q 025326 30 QGNPTDTLVRFLKARDWNVSKAHKMLVDC 58 (254)
Q Consensus 30 ~~~~d~~llRfL~a~~~dv~ka~~~l~~~ 58 (254)
..++.+.+++-|+...+||+.|...|.+.
T Consensus 113 G~~~~~~~~~aL~~~~Gdv~~Al~eLqr~ 141 (162)
T 4dbg_B 113 GFGPEEGSLQALFQHGGDVSRALTELQRQ 141 (162)
T ss_dssp TCCGGGTHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 46677788999999999999998877554
No 65
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=37.94 E-value=9.9 Score=26.55 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=21.0
Q ss_pred ChHHHHHHHhhcCCCHHHHHHHHHH
Q 025326 33 PTDTLVRFLKARDWNVSKAHKMLVD 57 (254)
Q Consensus 33 ~d~~llRfL~a~~~dv~ka~~~l~~ 57 (254)
|-.+|..-|.|+++|+.+|+.+|-.
T Consensus 33 D~~~L~~ALkAsnGdl~qAV~~LT~ 57 (129)
T 2lva_A 33 DPSFLHEALKASNGDITQAVSLLTD 57 (129)
Confidence 3458888999999999999988843
No 66
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=31.12 E-value=76 Score=25.44 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=23.4
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHHHH
Q 025326 31 GNPTDTLVRFLKARDWNVSKAHKMLVD 57 (254)
Q Consensus 31 ~~~d~~llRfL~a~~~dv~ka~~~l~~ 57 (254)
+.++....+||.+++||++.|...+-.
T Consensus 27 g~~~~~A~~~L~~~~WdLe~Al~~ff~ 53 (270)
T 3bq3_A 27 KCDPKVSRKYLQRNHWNINYALNDYYD 53 (270)
T ss_dssp CCCHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 577889999999999999999887643
No 67
>1h4x_A SPOIIAA, anti-sigma F factor antagonist; cell differentiation, crystallography, phosphorylation, sigma factor, sporulation; HET: SEP; 1.16A {Bacillus sphaericus} SCOP: c.13.2.1 PDB: 1h4z_A 1h4y_A
Probab=30.66 E-value=53 Score=21.85 Aligned_cols=50 Identities=6% Similarity=0.040 Sum_probs=34.1
Q ss_pred EEEEeCCCCCcccccchHHHHHHHHhhhhcCccccceEEEEcCCcchHHHHHHh
Q 025326 151 LKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVV 204 (254)
Q Consensus 151 ~~IiD~~g~~~~~~~~~~~~k~~~~~~~~~yP~rl~~i~vvN~p~~~~~~~~~v 204 (254)
.+++|+++++.-....+..+..+.+.++ .+=..+.+.|++.-+.-++.+.
T Consensus 44 ~vvlDls~v~~iDssgl~~L~~~~~~~~----~~g~~l~l~~~~~~v~~~l~~~ 93 (117)
T 1h4x_A 44 TIIWNFERLSFMDSSGVGLVLGRMRELE----AVAGRTILLNPSPTMRKVFQFS 93 (117)
T ss_dssp EEEEEEEEEEEECTHHHHHHHHHHHHHH----TTTCEEEEESCCHHHHHHHHHT
T ss_pred EEEEECCCCcEechHHHHHHHHHHHHHH----HcCCEEEEEeCCHHHHHHHHHh
Confidence 5799999888765544444555444444 3447889999998777776665
No 68
>4hyl_A Stage II sporulation protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 1.75A {Haliangium ochraceum}
Probab=30.21 E-value=44 Score=22.33 Aligned_cols=51 Identities=6% Similarity=0.133 Sum_probs=35.4
Q ss_pred EEEEeCCCCCcccccchHHHHHHHHhhhhcCccccceEEEEcCCcchHHHHHHhc
Q 025326 151 LKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVK 205 (254)
Q Consensus 151 ~~IiD~~g~~~~~~~~~~~~k~~~~~~~~~yP~rl~~i~vvN~p~~~~~~~~~vk 205 (254)
.+|+|+++++.-....+..+..+.+.++ .+=.++.+.|++.-+.-++.+..
T Consensus 44 ~vvlDls~v~~iDssgl~~L~~~~~~~~----~~g~~l~l~~~~~~v~~~l~~~g 94 (117)
T 4hyl_A 44 KMILDLREVSYMSSAGLRVLLSLYRHTS----NQQGALVLVGVSEEIRDTMEITG 94 (117)
T ss_dssp EEEEEEEEEEEECHHHHHHHHHHHHHHH----HTTCEEEEECCCHHHHHHHHHHT
T ss_pred eEEEECCCCcEEcHHHHHHHHHHHHHHH----HcCCEEEEEeCCHHHHHHHHHhC
Confidence 8999999887665444444444444443 34478899999988887777654
No 69
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=29.73 E-value=1.7e+02 Score=21.68 Aligned_cols=60 Identities=13% Similarity=0.109 Sum_probs=43.6
Q ss_pred chHHHHHHHHHHHHhhhHH---HHHHhhhhcCCCChHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhCC
Q 025326 2 AHQEEIKQFQTLMEDLDDS---LKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLRWRIEND 66 (254)
Q Consensus 2 ~~~~~~~~lr~~~~~~~~~---l~~~~~~~~~~~~d~~llRfL~a~~~dv~ka~~~l~~~~~wR~~~~ 66 (254)
.++|+.++++++.++.... +++.+.. ....|-.-+.+.++|-+++.+...+..+.|.+..
T Consensus 68 LT~EQq~ql~~I~~e~r~~~~~Lr~ql~a-----kr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~ 130 (175)
T 3lay_A 68 LTTEQQATAQKIYDDYYTQTSALRQQLIS-----KRYEYNALLTASSPDTAKINAVAKEMESLGQKLD 130 (175)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3678888988888876433 3332211 1346677778899999999999999999988864
No 70
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=29.64 E-value=43 Score=22.16 Aligned_cols=51 Identities=6% Similarity=-0.013 Sum_probs=34.0
Q ss_pred EEEEeCCCCCcccccchHHHHHHHHhhhhcCccccceEEEEcCCcchHHHHHHhc
Q 025326 151 LKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVK 205 (254)
Q Consensus 151 ~~IiD~~g~~~~~~~~~~~~k~~~~~~~~~yP~rl~~i~vvN~p~~~~~~~~~vk 205 (254)
.+++|+++++.-....+..+..+.+.++ .+=..+.+.|++.-+.-++....
T Consensus 45 ~vvlDls~v~~iDssgl~~L~~~~~~~~----~~g~~l~l~~~~~~v~~~l~~~g 95 (116)
T 1th8_B 45 HIVLNLGQLTFMDSSGLGVILGRYKQIK----NVGGQMVVCAVSPAVKRLFDMSG 95 (116)
T ss_dssp EEEEEEEEEEEECHHHHHHHHHHHHHHH----HTTCCEEEESCCHHHHHHHHHHT
T ss_pred EEEEECCCCcEEccHHHHHHHHHHHHHH----HhCCeEEEEeCCHHHHHHHHHhC
Confidence 6799999887665444444444444443 33467899999987777776653
No 71
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=29.36 E-value=1.8e+02 Score=22.03 Aligned_cols=60 Identities=8% Similarity=0.071 Sum_probs=42.7
Q ss_pred HHHHHHhhhhcCccccceEEEEcCCcchHHHHHHhc-----ccCChhhhcceEEecCCCHhHHhhhCCC
Q 025326 170 MTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVK-----PLLQERTRRKMQVLQGNGRDELLKVRQL 233 (254)
Q Consensus 170 ~k~~~~~~~~~yP~rl~~i~vvN~p~~~~~~~~~vk-----~~l~~~t~~Ki~~~~~~~~~~L~~~i~~ 233 (254)
+....++.|-.+. -+-+.++|..-+.+.++.+++ .|++++..+.+.+.. +.+++.+.+.+
T Consensus 134 l~e~lt~~qlg~~--~kPvvlln~~gfw~~l~~~l~~~~~~Gfi~~~~~~~i~~~d--~~~e~~~~l~~ 198 (199)
T 3qua_A 134 FFEAWTAGYLGMH--DKPLILLDPFGHYDGLLTWLRGLVPTGYVSQRAMDSLVVVD--NVEAALEACAP 198 (199)
T ss_dssp HHHHHHHHHTTSC--CCCEEEECTTSTTHHHHHHHHHTTTTTSSCHHHHHTSEEES--SHHHHHHHHSC
T ss_pred HHHHHHHHHhccC--CCCEEEEcCCccchHHHHHHHHHHHCCCCCHHHCCeEEEeC--CHHHHHHHHhc
Confidence 4444444454442 257999998777887777653 488999999999876 48888887654
No 72
>1puz_A Conserved hypothetical protein; NMA1147, MR19, structural genomics, PSI, protein structure initiative; NMR {Neisseria meningitidis} SCOP: a.218.1.1
Probab=28.91 E-value=1.1e+02 Score=19.60 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHh
Q 025326 3 HQEEIKQFQTLMEDLDDSLKETF 25 (254)
Q Consensus 3 ~~~~~~~lr~~~~~~~~~l~~~~ 25 (254)
++++++++.++++.....|-.|+
T Consensus 39 s~~el~~f~~LL~~~D~DL~~w~ 61 (82)
T 1puz_A 39 SDKELSEFSEILEFQDQELLALI 61 (82)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCHHHHHHH
Confidence 56777777777776666666666
No 73
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=28.80 E-value=71 Score=19.30 Aligned_cols=26 Identities=23% Similarity=0.233 Sum_probs=18.7
Q ss_pred CCChHHHHHHHhhcCC-CHHHHHHHHH
Q 025326 31 GNPTDTLVRFLKARDW-NVSKAHKMLV 56 (254)
Q Consensus 31 ~~~d~~llRfL~a~~~-dv~ka~~~l~ 56 (254)
+++.....+-|+++++ |++.|+.-|.
T Consensus 30 GF~~~~a~~AL~~t~~~nve~A~ewL~ 56 (64)
T 2cpw_A 30 GFPRARAQKALASTGGRSVQTACDWLF 56 (64)
T ss_dssp TCCHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4666677777888877 8888776553
No 74
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=28.28 E-value=1e+02 Score=21.23 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=16.9
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHHH
Q 025326 31 GNPTDTLVRFLKARDWNVSKAHKMLV 56 (254)
Q Consensus 31 ~~~d~~llRfL~a~~~dv~ka~~~l~ 56 (254)
+++.....+-|+++++|+++|...|.
T Consensus 89 GF~~~~a~~AL~~~~~~~e~A~e~L~ 114 (126)
T 2lbc_A 89 GFQRNQAIQALRATNNNLERALDWIF 114 (126)
T ss_dssp TSCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 45556666677777777777766553
No 75
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=26.36 E-value=61 Score=22.64 Aligned_cols=29 Identities=7% Similarity=0.093 Sum_probs=17.7
Q ss_pred hcCCCChHHHHHHHhh--cCCCHHHHHHHHH
Q 025326 28 VHQGNPTDTLVRFLKA--RDWNVSKAHKMLV 56 (254)
Q Consensus 28 ~~~~~~d~~llRfL~a--~~~dv~ka~~~l~ 56 (254)
.|.+.|=..+.+||.. ..-|+++|...|+
T Consensus 54 ~P~~~DV~~l~~yL~~lVeek~Lek~~~vlk 84 (124)
T 3vu7_H 54 DPMEEDILQVVKYCTDLIEEKDLEKLDLVIK 84 (124)
T ss_dssp SCCHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhcccHHHHHHHHH
Confidence 3444454456666654 3568888877764
No 76
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=26.33 E-value=1e+02 Score=18.09 Aligned_cols=22 Identities=9% Similarity=0.220 Sum_probs=19.2
Q ss_pred hHHHHHHHhhcCCCHHHHHHHH
Q 025326 34 TDTLVRFLKARDWNVSKAHKML 55 (254)
Q Consensus 34 d~~llRfL~a~~~dv~ka~~~l 55 (254)
..++.+-|..+++|+.+|.+.|
T Consensus 21 ~~~i~~aL~~~~gn~~~aA~~L 42 (63)
T 3e7l_A 21 KIFIEEKLREYDYDLKRTAEEI 42 (63)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHH
Confidence 4578899999999999999887
No 77
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=26.08 E-value=1.3e+02 Score=19.21 Aligned_cols=28 Identities=14% Similarity=0.017 Sum_probs=17.0
Q ss_pred CCChHHHHHHHhhcC-CCHHHHHHHHHHH
Q 025326 31 GNPTDTLVRFLKARD-WNVSKAHKMLVDC 58 (254)
Q Consensus 31 ~~~d~~llRfL~a~~-~dv~ka~~~l~~~ 58 (254)
+++.....+-|++.+ +|++.|+.-|..+
T Consensus 40 GF~~~~a~~AL~~t~n~n~e~A~ewL~~h 68 (84)
T 1vek_A 40 GFSQLHCQKAAINTSNAGVEEAMNWLLSH 68 (84)
T ss_dssp TCCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 455556666666653 6777776666443
No 78
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=26.00 E-value=1.3e+02 Score=19.14 Aligned_cols=26 Identities=15% Similarity=0.010 Sum_probs=20.6
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHH
Q 025326 34 TDTLVRFLKARDWNVSKAHKMLVDCL 59 (254)
Q Consensus 34 d~~llRfL~a~~~dv~ka~~~l~~~~ 59 (254)
-.+++-.+.....+.++|...+.+.+
T Consensus 45 A~~~lg~~~~~~g~y~~Ai~~w~~~l 70 (93)
T 3bee_A 45 ALSLIANDHFISFRFQEAIDTWVLLL 70 (93)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34788888888999999988877654
No 79
>4fjo_A DNA repair protein REV1; translesion synthesis, transferase -DNA binding protein COMP transferase-DNA binding protein complex; HET: DNA; 2.72A {Mus musculus} PDB: 2lsg_A* 2lsk_A* 2lsy_A*
Probab=25.94 E-value=65 Score=21.32 Aligned_cols=30 Identities=10% Similarity=0.081 Sum_probs=18.3
Q ss_pred hcCCCChHHHHHHHhh--cCCCHHHHHHHHHH
Q 025326 28 VHQGNPTDTLVRFLKA--RDWNVSKAHKMLVD 57 (254)
Q Consensus 28 ~~~~~~d~~llRfL~a--~~~dv~ka~~~l~~ 57 (254)
.|.+.|=..+.+||.. ..-|+++|...++-
T Consensus 27 ~P~~~DV~~l~~yL~~lv~~~~lek~~~vlk~ 58 (97)
T 4fjo_A 27 DPMEEDILQVVRYCTDLIEEKDLEKLDLVIKY 58 (97)
T ss_dssp SCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhccCHHHHHHHHHH
Confidence 3444454456666554 35689998887653
No 80
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Probab=25.87 E-value=88 Score=21.07 Aligned_cols=50 Identities=8% Similarity=0.081 Sum_probs=32.5
Q ss_pred EEEEEeCCCCCcccccchHHHHHHHHhhhhcCccccceEEEEcCCcchHHHHHHh
Q 025326 150 SLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVV 204 (254)
Q Consensus 150 ~~~IiD~~g~~~~~~~~~~~~k~~~~~~~~~yP~rl~~i~vvN~p~~~~~~~~~v 204 (254)
-.+|+|+++++.-....+..+..+.+. +-. =.++++.|++.-+.-++...
T Consensus 47 ~~vilDl~~v~~iDssgl~~L~~~~~~----~~~-g~~l~l~~~~~~v~~~l~~~ 96 (118)
T 3ny7_A 47 RIVILKWDAVPVLDAGGLDAFQRFVKR----LPE-GCELRVCNVEFQPLRTMARA 96 (118)
T ss_dssp SEEEEEEEECCCBCHHHHHHHHHHHHH----CCT-TCEEEEECCCHHHHHHHHHT
T ss_pred cEEEEEcCCCCeecHHHHHHHHHHHHH----HHC-CCEEEEecCCHHHHHHHHHc
Confidence 479999998876654433444444433 334 57899999987666555554
No 81
>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A*
Probab=23.87 E-value=2.3e+02 Score=21.15 Aligned_cols=32 Identities=16% Similarity=0.120 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHhhhhcccccCCCCCCCcEEEE
Q 025326 74 PILPAELYRAVRDSQLVGVSGYSKEGLPVIAV 105 (254)
Q Consensus 74 ~~~~~~~~~~l~~~~~~~~~g~D~~Grpv~~~ 105 (254)
..+..++..-++....+-.+....+|||+++-
T Consensus 152 ~Ls~~Em~~Ll~~L~~~~~p~~CpHGRPt~~~ 183 (197)
T 3kdg_A 152 HLRNDEIKALLDDLRSTSDPFTCPHGRPIIIH 183 (197)
T ss_dssp CCCHHHHHHHHHHHHHSSCTTBCTTSCBCEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCCCCCcEEEE
Confidence 34456665555554455566778999999883
No 82
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=23.72 E-value=1.3e+02 Score=25.98 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=14.9
Q ss_pred CchHHHHHHHHHHHHhhh
Q 025326 1 MAHQEEIKQFQTLMEDLD 18 (254)
Q Consensus 1 ~~~~~~~~~lr~~~~~~~ 18 (254)
+.++|+|++||+..+...
T Consensus 295 ~Lt~EEI~ELREaF~~fD 312 (440)
T 3u0k_A 295 QLTEEQIAEFKEAFSLFD 312 (440)
T ss_dssp CCCHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHc
Confidence 467899999999988754
No 83
>1m3w_A H10H24; four-helix bundle, heme binding, maquette, heme binding protein, electron transport, de novo protein; 2.80A {Synthetic} SCOP: k.8.1.1
Probab=22.83 E-value=80 Score=15.54 Aligned_cols=21 Identities=33% Similarity=0.585 Sum_probs=16.0
Q ss_pred chHHHHHHHHHHHHhhhHHHH
Q 025326 2 AHQEEIKQFQTLMEDLDDSLK 22 (254)
Q Consensus 2 ~~~~~~~~lr~~~~~~~~~l~ 22 (254)
.|+|-++.+.++++-..+.++
T Consensus 9 lheeflkkfeellklheerlk 29 (32)
T 1m3w_A 9 LHEEFLKKFEELLKLHEERLK 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 377888888888887776654
No 84
>2jo7_A Glycosylphosphatidylinositol-anchored merozoite surface protein; surface antigen, GPI-anchored protein, recombinant vaccine; NMR {Babesia divergens}
Probab=22.07 E-value=1.7e+02 Score=21.94 Aligned_cols=59 Identities=14% Similarity=0.081 Sum_probs=40.0
Q ss_pred HHHHHHHHHhhhHHHHHHhhhhcCCCChHHHHHHHhhcCC------C---HHHHHHHHHHHHHHhhhC
Q 025326 7 IKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDW------N---VSKAHKMLVDCLRWRIEN 65 (254)
Q Consensus 7 ~~~lr~~~~~~~~~l~~~~~~~~~~~~d~~llRfL~a~~~------d---v~ka~~~l~~~~~wR~~~ 65 (254)
+.+||+-+..+++.+-..+-.-..+++-.-|.-|||.-+. | |++|-++++.|++.--.-
T Consensus 4 Le~lR~Elk~qRE~~Ls~Ii~sdGp~tIlQLid~LRiidtDlLlkVD~~~V~kAG~kVK~YLesiGI~ 71 (224)
T 2jo7_A 4 LDVLRGELRGQREAFLSEIIKSDGPFTILQLVGYLRVVDTDLLLKVDSTKVDEAGKKVKAYLEKIGIR 71 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCSCCCTTHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCeeHHHHHHHHHHhccchhhccCHHHHHHHHHHHHHHHHHhcCC
Confidence 5678887777776666555233445666688889988533 3 678888899888765443
No 85
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=21.09 E-value=1.3e+02 Score=24.90 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=23.4
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHHH
Q 025326 31 GNPTDTLVRFLKARDWNVSKAHKMLV 56 (254)
Q Consensus 31 ~~~d~~llRfL~a~~~dv~ka~~~l~ 56 (254)
..|.+...-||.-++|++++|...+-
T Consensus 57 ~~~~~~~~~~l~~~~w~~~~~~~~~~ 82 (362)
T 4gew_A 57 ATDEAFAQSILQDVDWDLKKALDVFY 82 (362)
T ss_dssp TCCHHHHHHHTTSSSSCHHHHHHHHH
T ss_pred CCcHHHHHHHHhhcCchHHHHHHHHc
Confidence 47888999999999999999998875
No 86
>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1
Probab=20.94 E-value=99 Score=22.14 Aligned_cols=70 Identities=7% Similarity=0.145 Sum_probs=40.0
Q ss_pred cccEEEEEeCCCCCcccccchHHHHHHHHhhhhcCccccce----EEEEcCCcchHHHHHHhcccCC-h-----hhhcce
Q 025326 147 IGTSLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTET----YYIVNAPYIFSACWKVVKPLLQ-E-----RTRRKM 216 (254)
Q Consensus 147 ~~~~~~IiD~~g~~~~~~~~~~~~k~~~~~~~~~yP~rl~~----i~vvN~p~~~~~~~~~vk~~l~-~-----~t~~Ki 216 (254)
....++|++++.+.++.-- .+.-.......||..+.. -+.-..| -..++..|+.+|+ + ...+|+
T Consensus 24 ~Gd~VVViNaeki~iTG~k----~~~K~yy~h~g~~gg~~~~~~~~~~~r~P--~~ii~~aVrGMLP~k~~lgr~~l~rL 97 (142)
T 1j3a_A 24 EGEEVVIVNAEKAVITGNR----EVIFSKYKQRTGLRTLTNPRRGPFYPKRS--DEIVRRTIRGMLPWKTDRGRKAFRRL 97 (142)
T ss_dssp TTCCEEEECGGGCEEESCH----HHHHHHHHHHC-------------CCCSH--HHHHHHHHHTTTTTTSHHHHHHHTTE
T ss_pred cCCEEEEEeCeeeEecccH----HhheeeeeecCCCCCCcCCccCcccccCH--HHHHHHHHHhhccCCCHHHHHHHhCc
Confidence 4678999999998887531 222233445577776332 1222222 4788899999999 3 355788
Q ss_pred EEecCC
Q 025326 217 QVLQGN 222 (254)
Q Consensus 217 ~~~~~~ 222 (254)
+++.+.
T Consensus 98 kVy~G~ 103 (142)
T 1j3a_A 98 KVYVGI 103 (142)
T ss_dssp EECSSC
T ss_pred EEeCCC
Confidence 887664
No 87
>3a1g_B Polymerase basic protein 2; influenza virus, RNA polymerase, nucleotide-binding, nucleotidyltransferase, nucleus, RNA replication; 1.70A {Influenza a virus} PDB: 2ztt_B
Probab=20.60 E-value=56 Score=17.61 Aligned_cols=17 Identities=29% Similarity=0.456 Sum_probs=14.0
Q ss_pred chHHHHHHHHHHHHhhh
Q 025326 2 AHQEEIKQFQTLMEDLD 18 (254)
Q Consensus 2 ~~~~~~~~lr~~~~~~~ 18 (254)
+|-|.|++|++|+++..
T Consensus 2 ~~~~~ikelk~L~~d~~ 18 (40)
T 3a1g_B 2 GSMERIKELRNLMSQSR 18 (40)
T ss_dssp HHHHHHHHHHHHTTSHH
T ss_pred chHHHHHHHHHHHHHHH
Confidence 46688999999998875
No 88
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=20.17 E-value=2e+02 Score=20.10 Aligned_cols=41 Identities=7% Similarity=0.082 Sum_probs=23.5
Q ss_pred chHHHHHHHHHHHHhhhHHHHHHhhhhcCCCChHHHHHHHhhcCCCHH
Q 025326 2 AHQEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVS 49 (254)
Q Consensus 2 ~~~~~~~~lr~~~~~~~~~l~~~~~~~~~~~~d~~llRfL~a~~~dv~ 49 (254)
.++++++++++..+.... .-....+-..|...|++-+.+..
T Consensus 10 Lt~~qi~elk~~F~~~D~-------d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 10 LSQRQMQELKEAFTMIDQ-------DRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp CCHHHHHHHHHHHHHHCC-------STTSCCCHHHHHHHHHHTTSCCC
T ss_pred CCHHHHHHHHHHHHHHCC-------CCCCeEcHHHHHHHHHHcCCCcc
Confidence 467888888887776431 11223444556666666555443
No 89
>2lm4_A Succinate dehydrogenase assembly factor 2, mitoch; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Saccharomyces cerevisiae}
Probab=20.16 E-value=43 Score=22.86 Aligned_cols=13 Identities=0% Similarity=-0.107 Sum_probs=7.6
Q ss_pred CChHHHHHHHhhc
Q 025326 32 NPTDTLVRFLKAR 44 (254)
Q Consensus 32 ~~d~~llRfL~a~ 44 (254)
.+|..|+.|+.+.
T Consensus 67 ~~D~DL~~wl~g~ 79 (109)
T 2lm4_A 67 ELDWDIYYWATKN 79 (109)
T ss_dssp SCHHHHHHHHTTC
T ss_pred CCCHHHHHHHhCC
Confidence 4455666666654
No 90
>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M 1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I* 1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K* 1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ...
Probab=20.06 E-value=1.1e+02 Score=22.08 Aligned_cols=72 Identities=11% Similarity=0.180 Sum_probs=42.8
Q ss_pred cccEEEEEeCCCCCcccccchHHHHHHHHhhhhcCccc-cceEEEEcCCcchHHHHHHhcccCC-hh-----hhcceEEe
Q 025326 147 IGTSLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEK-TETYYIVNAPYIFSACWKVVKPLLQ-ER-----TRRKMQVL 219 (254)
Q Consensus 147 ~~~~~~IiD~~g~~~~~~~~~~~~k~~~~~~~~~yP~r-l~~i~vvN~p~~~~~~~~~vk~~l~-~~-----t~~Ki~~~ 219 (254)
....++|++++++.++.-- .+.-.......||.. .+.++-=+| -..++..|+.+|+ +. ..+|++++
T Consensus 32 ~Gd~VVViNaeki~iTG~k----~~~K~yy~htg~~g~~~~~~~~r~P---~~i~~~aVrGMLP~K~~lgr~~l~rLkVy 104 (145)
T 1vq8_J 32 DGETVAVVNAERAVITGRE----EQIVEKYEKRVDIGNDNGYFYPKRP---DGIFKRTIRGMLPHKKQRGREAFESVRVY 104 (145)
T ss_dssp TTCCEEEECGGGCEEESCH----HHHHHHHHHHHHCCCSSCCCCCCSH---HHHHHHHHHTTTTTTSHHHHHHHHTEEEC
T ss_pred cCCEEEEEeCEeeEecchh----hhheeeeEEeCCCCCCHHHHhhcCh---HHHHHHHHHhhcCCCCHHHHHHHhCeEEE
Confidence 4567888888888876531 222233334466663 222222222 3688899999998 43 45688887
Q ss_pred cCCCHh
Q 025326 220 QGNGRD 225 (254)
Q Consensus 220 ~~~~~~ 225 (254)
.+...+
T Consensus 105 ~G~~~p 110 (145)
T 1vq8_J 105 LGNPYD 110 (145)
T ss_dssp SSCCSS
T ss_pred CCCCCC
Confidence 765433
Done!