Query 025328
Match_columns 254
No_of_seqs 138 out of 1102
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 04:44:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025328.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025328hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05472 cnd41_like Chloroplast 100.0 6.4E-43 1.4E-47 303.8 26.4 226 2-244 65-299 (299)
2 cd05489 xylanase_inhibitor_I_l 100.0 1.7E-42 3.8E-47 307.8 26.6 235 2-242 107-361 (362)
3 cd05475 nucellin_like Nucellin 100.0 6.5E-41 1.4E-45 287.7 23.8 200 2-244 74-273 (273)
4 PLN03146 aspartyl protease fam 100.0 1.1E-40 2.4E-45 302.4 26.4 223 2-247 195-431 (431)
5 cd05476 pepsin_A_like_plant Ch 100.0 3.7E-39 8E-44 275.7 22.0 188 2-244 63-265 (265)
6 cd05478 pepsin_A Pepsin A, asp 100.0 1.4E-38 3.1E-43 278.7 19.9 210 2-241 95-317 (317)
7 cd05486 Cathespin_E Cathepsin 100.0 4E-38 8.8E-43 275.7 20.1 214 2-241 85-316 (316)
8 PTZ00165 aspartyl protease; Pr 100.0 7.9E-38 1.7E-42 285.8 21.8 219 2-249 210-453 (482)
9 cd05490 Cathepsin_D2 Cathepsin 100.0 9.5E-38 2.1E-42 274.4 20.5 215 2-241 93-325 (325)
10 cd05474 SAP_like SAPs, pepsin- 100.0 7.8E-38 1.7E-42 271.1 18.1 209 2-242 60-295 (295)
11 cd05477 gastricsin Gastricsins 100.0 5.1E-37 1.1E-41 269.0 21.4 214 2-242 88-318 (318)
12 cd05488 Proteinase_A_fungi Fun 100.0 3E-37 6.4E-42 270.7 19.6 213 2-241 95-320 (320)
13 cd05473 beta_secretase_like Be 100.0 9.5E-37 2.1E-41 272.0 22.0 235 5-251 89-354 (364)
14 KOG1339 Aspartyl protease [Pos 100.0 1.6E-36 3.4E-41 273.3 23.1 227 2-245 154-397 (398)
15 cd05485 Cathepsin_D_like Cathe 100.0 1.2E-36 2.5E-41 267.9 21.6 215 2-241 98-329 (329)
16 cd06098 phytepsin Phytepsin, a 100.0 2.1E-36 4.5E-41 265.1 21.7 203 2-241 96-317 (317)
17 cd05487 renin_like Renin stimu 100.0 1.8E-36 3.9E-41 266.4 20.3 214 3-242 95-326 (326)
18 cd06096 Plasmepsin_5 Plasmepsi 100.0 2.9E-36 6.4E-41 265.1 19.4 193 2-245 112-326 (326)
19 PTZ00013 plasmepsin 4 (PM4); P 100.0 9.8E-35 2.1E-39 263.2 19.6 212 3-243 223-449 (450)
20 PTZ00147 plasmepsin-1; Provisi 100.0 1.2E-34 2.6E-39 263.1 19.5 212 3-243 224-450 (453)
21 cd06097 Aspergillopepsin_like 100.0 4E-32 8.7E-37 233.8 16.1 180 2-241 87-278 (278)
22 PF00026 Asp: Eukaryotic aspar 100.0 1E-32 2.3E-37 240.8 11.3 215 2-242 87-317 (317)
23 cd05471 pepsin_like Pepsin-lik 100.0 7.6E-31 1.6E-35 225.3 18.3 182 2-241 87-283 (283)
24 PF14541 TAXi_C: Xylanase inhi 100.0 2.3E-28 4.9E-33 194.0 13.6 151 87-241 1-161 (161)
25 PF14543 TAXi_N: Xylanase inhi 99.1 7.9E-11 1.7E-15 93.6 6.5 58 2-65 104-164 (164)
26 cd05479 RP_DDI RP_DDI; retrope 93.1 0.39 8.4E-06 36.0 6.4 26 214-239 99-124 (124)
27 TIGR02281 clan_AA_DTGA clan AA 91.4 0.41 8.8E-06 35.8 4.6 36 85-128 9-44 (121)
28 PF13650 Asp_protease_2: Aspar 90.2 0.61 1.3E-05 32.1 4.4 29 95-128 3-31 (90)
29 PF08284 RVP_2: Retroviral asp 90.1 0.44 9.5E-06 36.4 3.8 27 215-241 105-131 (135)
30 TIGR03698 clan_AA_DTGF clan AA 89.9 1.7 3.7E-05 31.7 6.8 24 214-237 84-107 (107)
31 cd05484 retropepsin_like_LTR_2 88.0 1.1 2.5E-05 31.3 4.5 30 94-128 4-33 (91)
32 PF13975 gag-asp_proteas: gag- 86.9 1.5 3.2E-05 29.4 4.4 29 95-128 13-41 (72)
33 cd05483 retropepsin_like_bacte 84.3 2.5 5.3E-05 29.3 4.7 30 94-128 6-35 (96)
34 cd06095 RP_RTVL_H_like Retrope 80.8 3.2 7E-05 28.7 4.2 29 95-128 3-31 (86)
35 PF00077 RVP: Retroviral aspar 80.1 2.6 5.7E-05 29.8 3.6 27 93-124 8-34 (100)
36 COG3577 Predicted aspartyl pro 72.6 10 0.00022 31.1 5.3 36 85-128 103-138 (215)
37 PF09668 Asp_protease: Asparty 68.9 8.7 0.00019 28.9 4.0 30 94-128 28-57 (124)
38 cd05481 retropepsin_like_LTR_1 66.1 6.8 0.00015 27.7 2.8 30 95-128 3-32 (93)
39 COG5550 Predicted aspartyl pro 64.5 5.8 0.00013 29.7 2.2 21 108-128 28-49 (125)
40 cd05470 pepsin_retropepsin_lik 50.5 13 0.00028 26.5 2.1 19 106-124 11-29 (109)
41 PF12384 Peptidase_A2B: Ty3 tr 47.7 55 0.0012 25.9 5.2 23 107-129 46-68 (177)
42 cd06096 Plasmepsin_5 Plasmepsi 33.0 42 0.00092 29.3 3.0 30 92-124 5-34 (326)
43 cd06097 Aspergillopepsin_like 32.0 33 0.00071 29.1 2.1 28 94-124 4-31 (278)
44 PF05585 DUF1758: Putative pep 30.9 27 0.00058 27.3 1.2 23 107-129 13-35 (164)
45 cd00303 retropepsin_like Retro 30.3 40 0.00086 21.5 1.9 20 108-127 11-30 (92)
46 cd05476 pepsin_A_like_plant Ch 28.7 48 0.001 27.9 2.5 26 94-122 5-30 (265)
47 cd05477 gastricsin Gastricsins 27.9 52 0.0011 28.5 2.7 28 93-123 6-33 (318)
48 cd05474 SAP_like SAPs, pepsin- 26.7 52 0.0011 27.9 2.4 26 93-121 5-30 (295)
49 cd05471 pepsin_like Pepsin-lik 26.4 58 0.0013 27.2 2.6 29 94-125 4-32 (283)
50 KOG0012 DNA damage inducible p 26.3 3.8E+02 0.0082 24.1 7.5 40 200-243 307-347 (380)
51 cd05478 pepsin_A Pepsin A, asp 25.7 59 0.0013 28.1 2.6 27 94-123 14-40 (317)
52 cd05490 Cathepsin_D2 Cathepsin 24.8 63 0.0014 28.1 2.6 27 94-123 10-36 (325)
53 PRK09784 hypothetical protein; 24.7 1.2E+02 0.0027 25.5 4.1 39 91-129 356-398 (417)
54 cd06098 phytepsin Phytepsin, a 24.4 64 0.0014 28.0 2.6 32 86-123 9-40 (317)
55 cd05486 Cathespin_E Cathepsin 23.3 66 0.0014 27.8 2.5 27 94-123 4-30 (316)
56 cd05488 Proteinase_A_fungi Fun 23.0 68 0.0015 27.8 2.5 28 93-123 13-40 (320)
57 cd06094 RP_Saci_like RP_Saci_l 22.8 73 0.0016 22.4 2.1 19 106-124 9-27 (89)
58 PLN03146 aspartyl protease fam 22.2 65 0.0014 29.6 2.2 31 86-122 83-113 (431)
59 cd05473 beta_secretase_like Be 21.5 81 0.0018 28.0 2.7 27 94-123 7-33 (364)
60 PTZ00147 plasmepsin-1; Provisi 21.2 84 0.0018 29.1 2.8 28 94-124 143-170 (453)
61 cd05487 renin_like Renin stimu 20.6 86 0.0019 27.3 2.6 27 94-123 12-38 (326)
No 1
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=6.4e-43 Score=303.84 Aligned_cols=226 Identities=25% Similarity=0.393 Sum_probs=183.2
Q ss_pred ceEEeeccCCCCCCCCCCCCcceEeecCCCCCChHHHHHHhCCccCeEEEEecC---CCcEEEEECCCCCCCCCceEEec
Q 025328 2 LSFCSCGYNQHNPGPLSPPDTAGVLGLGRGRISIVSQLREYGLIRNVIGHCIGQ---NGRGVLFLGDGKVPSSGVAWTPM 78 (254)
Q Consensus 2 ~~~fGc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~~Fs~~l~~---~~~G~l~fGg~~~~~~~i~~~pi 78 (254)
+++|||++.+++.+ ...+||||||++.+|++.|+..+ .+++||+||.+ ...|+|+|||+|+..+++.|+|+
T Consensus 65 ~~~Fg~~~~~~~~~----~~~~GilGLg~~~~s~~~ql~~~--~~~~FS~~L~~~~~~~~G~l~fGg~d~~~g~l~~~pv 138 (299)
T cd05472 65 GFAFGCGHDNEGLF----GGAAGLLGLGRGKLSLPSQTASS--YGGVFSYCLPDRSSSSSGYLSFGAAASVPAGASFTPM 138 (299)
T ss_pred CEEEECCccCCCcc----CCCCEEEECCCCcchHHHHhhHh--hcCceEEEccCCCCCCCceEEeCCccccCCCceECCC
Confidence 68999999887765 26899999999999999998765 46899999985 45899999999966889999999
Q ss_pred ccCCCCCCCeEEeeeEEEECCEEecCC-----CCeEEEecCCccEEeChHHHHHHHHHHHHHhcCCCCccCCCCCCCCcc
Q 025328 79 LQNSADLKHYILGPAELLYSGKSCGLK-----DLTLIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPIC 153 (254)
Q Consensus 79 ~~~~~~~~~y~v~l~~i~v~~~~~~~~-----~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~C 153 (254)
+.++....+|.|++++|+|+++.+... ...+||||||++++||+++|++|.+++.+..... .+......++.|
T Consensus 139 ~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~~~~~l~~~l~~~~~~~--~~~~~~~~~~~C 216 (299)
T cd05472 139 LSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSAYAALRDAFRAAMAAY--PRAPGFSILDTC 216 (299)
T ss_pred ccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHHHHHHHHHHHHHHhccC--CCCCCCCCCCcc
Confidence 986533479999999999999988652 4689999999999999999999999998876421 111112233469
Q ss_pred cCCCCCCcccccccCCcEEEEEccCCcceEEEecCCceEEEe-CCCceEEEEEcCCcCCCCCceeeccceeeceEEEEeC
Q 025328 154 WRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVIS-GRKNVCLGILNGSEAEVGENNIIGEIFMQDKMVIYDN 232 (254)
Q Consensus 154 ~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~i~~~~y~~~~-~~~~~C~~~~~~~~~~~~~~~iLG~~f~~~~~vvfD~ 232 (254)
+..+.. . ...+|+|+|+|++ ++.++|+|++|++.. ..+..|+++..... ..+.+|||+.|||++|+|||+
T Consensus 217 ~~~~~~---~-~~~~P~i~f~f~~---g~~~~l~~~~y~~~~~~~~~~C~~~~~~~~--~~~~~ilG~~fl~~~~vvfD~ 287 (299)
T cd05472 217 YDLSGF---R-SVSVPTVSLHFQG---GADVELDASGVLYPVDDSSQVCLAFAGTSD--DGGLSIIGNVQQQTFRVVYDV 287 (299)
T ss_pred CcCCCC---c-CCccCCEEEEECC---CCEEEeCcccEEEEecCCCCEEEEEeCCCC--CCCCEEEchHHccceEEEEEC
Confidence 875311 1 1468999999985 499999999999943 34578998876532 135799999999999999999
Q ss_pred CCCEEeeecCCC
Q 025328 233 EKQRIGWKPEDC 244 (254)
Q Consensus 233 ~~~rIGfa~~~c 244 (254)
+++|||||+++|
T Consensus 288 ~~~~igfa~~~C 299 (299)
T cd05472 288 AGGRIGFAPGGC 299 (299)
T ss_pred CCCEEeEecCCC
Confidence 999999999999
No 2
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=1.7e-42 Score=307.83 Aligned_cols=235 Identities=21% Similarity=0.361 Sum_probs=184.5
Q ss_pred ceEEeeccCCCCCCCCCCCCcceEeecCCCCCChHHHHHHhCCccCeEEEEecC--CCcEEEEECCCCC--C------CC
Q 025328 2 LSFCSCGYNQHNPGPLSPPDTAGVLGLGRGRISIVSQLREYGLIRNVIGHCIGQ--NGRGVLFLGDGKV--P------SS 71 (254)
Q Consensus 2 ~~~fGc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~~Fs~~l~~--~~~G~l~fGg~~~--~------~~ 71 (254)
+++|||++++..... ...+|||||||++++|++.||..++..+++||+||.+ ..+|+|+||+.+. . .+
T Consensus 107 ~~~FGC~~~~~~~~~--~~~~dGIlGLg~~~lSl~sql~~~~~~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~ 184 (362)
T cd05489 107 NFVFSCAPSLLLKGL--PPGAQGVAGLGRSPLSLPAQLASAFGVARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSK 184 (362)
T ss_pred CEEEEcCCcccccCC--ccccccccccCCCccchHHHhhhhcCCCcceEEEeCCCCCCCeeEEECCCchhcccccccccC
Confidence 689999998742211 2458999999999999999998876568999999985 3589999999873 1 37
Q ss_pred CceEEecccCCCCCCCeEEeeeEEEECCEEecCC----------CCeEEEecCCccEEeChHHHHHHHHHHHHHhcCCCC
Q 025328 72 GVAWTPMLQNSADLKHYILGPAELLYSGKSCGLK----------DLTLIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPL 141 (254)
Q Consensus 72 ~i~~~pi~~~~~~~~~y~v~l~~i~v~~~~~~~~----------~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~ 141 (254)
++.|||++.++....+|.|+|++|+||++++.++ ...+||||||++++||+++|++|.+++.+++...+.
T Consensus 185 ~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~ 264 (362)
T cd05489 185 SLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDRLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPR 264 (362)
T ss_pred CccccccccCCCCCCceEEEEEEEEECCEECCCCchhccccccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCc
Confidence 8999999987533579999999999999988653 358999999999999999999999999988764221
Q ss_pred ccCCCCCCCCcccCCCCCCcccccccCCcEEEEEccCCcceEEEecCCceEEEeCCCceEEEEEcCCcCCCCCceeeccc
Q 025328 142 KLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVISGRKNVCLGILNGSEAEVGENNIIGEI 221 (254)
Q Consensus 142 ~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~i~~~~y~~~~~~~~~C~~~~~~~~~~~~~~~iLG~~ 221 (254)
... .....+.||......+.+....+|+|+|+|+|. +++|+|+|++|+++...+.+|++|...+... ...||||+.
T Consensus 265 ~~~-~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~--g~~~~l~~~ny~~~~~~~~~Cl~f~~~~~~~-~~~~IlG~~ 340 (362)
T cd05489 265 VPA-AAVFPELCYPASALGNTRLGYAVPAIDLVLDGG--GVNWTIFGANSMVQVKGGVACLAFVDGGSEP-RPAVVIGGH 340 (362)
T ss_pred CCC-CCCCcCccccCCCcCCcccccccceEEEEEeCC--CeEEEEcCCceEEEcCCCcEEEEEeeCCCCC-CceEEEeeh
Confidence 111 112236899753211111124799999999852 4899999999999877677999998765311 347999999
Q ss_pred eeeceEEEEeCCCCEEeeecC
Q 025328 222 FMQDKMVIYDNEKQRIGWKPE 242 (254)
Q Consensus 222 f~~~~~vvfD~~~~rIGfa~~ 242 (254)
|||++|++||++++|||||++
T Consensus 341 ~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 341 QMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred eecceEEEEECCCCEeecccC
Confidence 999999999999999999975
No 3
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=6.5e-41 Score=287.71 Aligned_cols=200 Identities=57% Similarity=1.019 Sum_probs=168.4
Q ss_pred ceEEeeccCCCCCCCCCCCCcceEeecCCCCCChHHHHHHhCCccCeEEEEecCCCcEEEEECCCCCCCCCceEEecccC
Q 025328 2 LSFCSCGYNQHNPGPLSPPDTAGVLGLGRGRISIVSQLREYGLIRNVIGHCIGQNGRGVLFLGDGKVPSSGVAWTPMLQN 81 (254)
Q Consensus 2 ~~~fGc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~~Fs~~l~~~~~G~l~fGg~~~~~~~i~~~pi~~~ 81 (254)
+++|||++++.+.+...+...|||||||++++++++||.++++++++||+||.+..+|.|+||+..++.+++.|+|+.++
T Consensus 74 ~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~~Fs~~l~~~~~g~l~~G~~~~~~g~i~ytpl~~~ 153 (273)
T cd05475 74 RIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGIIKNVIGHCLSSNGGGFLFFGDDLVPSSGVTWTPMRRE 153 (273)
T ss_pred CEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhcCCcCceEEEEccCCCCeEEEECCCCCCCCCeeecccccC
Confidence 57899998876654334457899999999999999999999888999999999766899999976666788999999876
Q ss_pred CCCCCCeEEeeeEEEECCEEecCCCCeEEEecCCccEEeChHHHHHHHHHHHHHhcCCCCccCCCCCCCCcccCCCCCCc
Q 025328 82 SADLKHYILGPAELLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKAL 161 (254)
Q Consensus 82 ~~~~~~y~v~l~~i~v~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~ 161 (254)
+. ..+|.|++.+|+||++........+||||||++++||+++|
T Consensus 154 ~~-~~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~~y------------------------------------ 196 (273)
T cd05475 154 SQ-KKHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQAY------------------------------------ 196 (273)
T ss_pred CC-CCeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCccc------------------------------------
Confidence 42 46999999999999987655567999999999999999765
Q ss_pred ccccccCCcEEEEEccCCcceEEEecCCceEEEeCCCceEEEEEcCCcCCCCCceeeccceeeceEEEEeCCCCEEeeec
Q 025328 162 GQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVISGRKNVCLGILNGSEAEVGENNIIGEIFMQDKMVIYDNEKQRIGWKP 241 (254)
Q Consensus 162 ~~~~~~~P~i~f~f~g~~~~~~~~i~~~~y~~~~~~~~~C~~~~~~~~~~~~~~~iLG~~f~~~~~vvfD~~~~rIGfa~ 241 (254)
+|+|+|+|++...+++++|||++|++....+..|++++........+.||||+.|||++|+|||++++|||||+
T Consensus 197 ------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~ 270 (273)
T cd05475 197 ------FKPLTLKFGKGWRTRLLEIPPENYLIISEKGNVCLGILNGSEIGLGNTNIIGDISMQGLMVIYDNEKQQIGWVR 270 (273)
T ss_pred ------cccEEEEECCCCceeEEEeCCCceEEEcCCCCEEEEEecCCCcCCCceEEECceEEEeeEEEEECcCCEeCccc
Confidence 27899999872112799999999999766667899887654322235799999999999999999999999999
Q ss_pred CCC
Q 025328 242 EDC 244 (254)
Q Consensus 242 ~~c 244 (254)
++|
T Consensus 271 ~~C 273 (273)
T cd05475 271 SDC 273 (273)
T ss_pred CCC
Confidence 999
No 4
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=1.1e-40 Score=302.38 Aligned_cols=223 Identities=24% Similarity=0.422 Sum_probs=182.1
Q ss_pred ceEEeeccCCCCCCCCCCCCcceEeecCCCCCChHHHHHHhCCccCeEEEEecC-----CCcEEEEECCCCCCC-CCceE
Q 025328 2 LSFCSCGYNQHNPGPLSPPDTAGVLGLGRGRISIVSQLREYGLIRNVIGHCIGQ-----NGRGVLFLGDGKVPS-SGVAW 75 (254)
Q Consensus 2 ~~~fGc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~~Fs~~l~~-----~~~G~l~fGg~~~~~-~~i~~ 75 (254)
+++|||++++.+.|. ...+||||||++.+|+++|+... +.++||+||.+ ...|.|+||+..+.. ..+.|
T Consensus 195 ~~~FGc~~~~~g~f~---~~~~GilGLG~~~~Sl~sql~~~--~~~~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~ 269 (431)
T PLN03146 195 GIVFGCGHNNGGTFD---EKGSGIVGLGGGPLSLISQLGSS--IGGKFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVS 269 (431)
T ss_pred CEEEeCCCCCCCCcc---CCCceeEecCCCCccHHHHhhHh--hCCcEEEECCCCCCCCCCcceEEeCCccccCCCCceE
Confidence 689999999877652 35899999999999999999763 55699999963 247999999976543 45899
Q ss_pred EecccCCCCCCCeEEeeeEEEECCEEecCCC--------CeEEEecCCccEEeChHHHHHHHHHHHHHhcCCCCccCCCC
Q 025328 76 TPMLQNSADLKHYILGPAELLYSGKSCGLKD--------LTLIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDD 147 (254)
Q Consensus 76 ~pi~~~~~~~~~y~v~l~~i~v~~~~~~~~~--------~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~ 147 (254)
||++.+.. +.+|.|.|++|+||++.++++. +.+||||||++++||+++|+++.+++.+++..... ....
T Consensus 270 tPl~~~~~-~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~--~~~~ 346 (431)
T PLN03146 270 TPLVSKDP-DTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSGTTLTLLPSDFYSELESAVEEAIGGERV--SDPQ 346 (431)
T ss_pred cccccCCC-CCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCCccceecCHHHHHHHHHHHHHHhccccC--CCCC
Confidence 99986432 4799999999999999887532 47999999999999999999999999988763211 1122
Q ss_pred CCCCcccCCCCCCcccccccCCcEEEEEccCCcceEEEecCCceEEEeCCCceEEEEEcCCcCCCCCceeeccceeeceE
Q 025328 148 KTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVISGRKNVCLGILNGSEAEVGENNIIGEIFMQDKM 227 (254)
Q Consensus 148 ~~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~i~~~~y~~~~~~~~~C~~~~~~~~~~~~~~~iLG~~f~~~~~ 227 (254)
..+..||... .. ..+|+|+|+|+| +++.|+|++|++....+.+|+++.... ..+|||+.|||++|
T Consensus 347 ~~~~~C~~~~----~~--~~~P~i~~~F~G----a~~~l~~~~~~~~~~~~~~Cl~~~~~~-----~~~IlG~~~q~~~~ 411 (431)
T PLN03146 347 GLLSLCYSST----SD--IKLPIITAHFTG----ADVKLQPLNTFVKVSEDLVCFAMIPTS-----SIAIFGNLAQMNFL 411 (431)
T ss_pred CCCCccccCC----CC--CCCCeEEEEECC----CeeecCcceeEEEcCCCcEEEEEecCC-----CceEECeeeEeeEE
Confidence 3456899742 11 268999999997 899999999999876677899987543 35999999999999
Q ss_pred EEEeCCCCEEeeecCCCCcc
Q 025328 228 VIYDNEKQRIGWKPEDCNTL 247 (254)
Q Consensus 228 vvfD~~~~rIGfa~~~c~~~ 247 (254)
|+||++++|||||+.+|+++
T Consensus 412 vvyDl~~~~igFa~~~C~~~ 431 (431)
T PLN03146 412 VGYDLESKTVSFKPTDCTKM 431 (431)
T ss_pred EEEECCCCEEeeecCCcCcC
Confidence 99999999999999999864
No 5
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=3.7e-39 Score=275.72 Aligned_cols=188 Identities=37% Similarity=0.638 Sum_probs=163.6
Q ss_pred ceEEeeccCCCCCCCCCCCCcceEeecCCCCCChHHHHHHhCCccCeEEEEecC----CCcEEEEECCCCC-CCCCceEE
Q 025328 2 LSFCSCGYNQHNPGPLSPPDTAGVLGLGRGRISIVSQLREYGLIRNVIGHCIGQ----NGRGVLFLGDGKV-PSSGVAWT 76 (254)
Q Consensus 2 ~~~fGc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~~Fs~~l~~----~~~G~l~fGg~~~-~~~~i~~~ 76 (254)
+++|||++++.+ + ....++||||||+...|++.||..++ ++||+||.+ ...|+|+||++|. +.+++.|+
T Consensus 63 ~~~Fg~~~~~~~-~--~~~~~~GIlGLg~~~~s~~~ql~~~~---~~Fs~~l~~~~~~~~~G~l~fGg~d~~~~~~l~~~ 136 (265)
T cd05476 63 NVAFGCGTDNEG-G--SFGGADGILGLGRGPLSLVSQLGSTG---NKFSYCLVPHDDTGGSSPLILGDAADLGGSGVVYT 136 (265)
T ss_pred CEEEEecccccC-C--ccCCCCEEEECCCCcccHHHHhhccc---CeeEEEccCCCCCCCCCeEEECCcccccCCCceEe
Confidence 688999999876 3 35679999999999999999998876 899999985 3589999999985 57899999
Q ss_pred ecccCCCCCCCeEEeeeEEEECCEEecC----------CCCeEEEecCCccEEeChHHHHHHHHHHHHHhcCCCCccCCC
Q 025328 77 PMLQNSADLKHYILGPAELLYSGKSCGL----------KDLTLIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPD 146 (254)
Q Consensus 77 pi~~~~~~~~~y~v~l~~i~v~~~~~~~----------~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~ 146 (254)
|++.++..+.+|.|.+++|+|+++.+.+ ....+|+||||++++||+++|
T Consensus 137 p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~lp~~~~--------------------- 195 (265)
T cd05476 137 PLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPDPAY--------------------- 195 (265)
T ss_pred ecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceEcCcccc---------------------
Confidence 9998643357999999999999998752 246899999999999999765
Q ss_pred CCCCCcccCCCCCCcccccccCCcEEEEEccCCcceEEEecCCceEEEeCCCceEEEEEcCCcCCCCCceeeccceeece
Q 025328 147 DKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVISGRKNVCLGILNGSEAEVGENNIIGEIFMQDK 226 (254)
Q Consensus 147 ~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~i~~~~y~~~~~~~~~C~~~~~~~~~~~~~~~iLG~~f~~~~ 226 (254)
|+|+|+|++ +..+.+++++|++....+.+|+++..... .+.||||++|||++
T Consensus 196 ----------------------P~i~~~f~~---~~~~~i~~~~y~~~~~~~~~C~~~~~~~~---~~~~ilG~~fl~~~ 247 (265)
T cd05476 196 ----------------------PDLTLHFDG---GADLELPPENYFVDVGEGVVCLAILSSSS---GGVSILGNIQQQNF 247 (265)
T ss_pred ----------------------CCEEEEECC---CCEEEeCcccEEEECCCCCEEEEEecCCC---CCcEEEChhhcccE
Confidence 589999995 49999999999997666789999887632 46899999999999
Q ss_pred EEEEeCCCCEEeeecCCC
Q 025328 227 MVIYDNEKQRIGWKPEDC 244 (254)
Q Consensus 227 ~vvfD~~~~rIGfa~~~c 244 (254)
|++||++++|||||+++|
T Consensus 248 ~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 248 LVEYDLENSRLGFAPADC 265 (265)
T ss_pred EEEEECCCCEEeeecCCC
Confidence 999999999999999999
No 6
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=1.4e-38 Score=278.69 Aligned_cols=210 Identities=17% Similarity=0.292 Sum_probs=169.6
Q ss_pred ceEEeeccCCCCCCCCCCCCcceEeecCCCCC------ChHHHHHHhCCc-cCeEEEEecCC--CcEEEEECCCCC--CC
Q 025328 2 LSFCSCGYNQHNPGPLSPPDTAGVLGLGRGRI------SIVSQLREYGLI-RNVIGHCIGQN--GRGVLFLGDGKV--PS 70 (254)
Q Consensus 2 ~~~fGc~~~~~~~~~~~~~~~dGIlGLg~~~~------s~~~ql~~~~~i-~~~Fs~~l~~~--~~G~l~fGg~~~--~~ 70 (254)
+++|||++++.+.+. .....|||||||++.+ +++.+|+++++| +++||+||.++ .+|+|+|||+|+ +.
T Consensus 95 ~~~fg~~~~~~~~~~-~~~~~dGilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~ 173 (317)
T cd05478 95 NQIFGLSETEPGSFF-YYAPFDGILGLAYPSIASSGATPVFDNMMSQGLVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYT 173 (317)
T ss_pred CEEEEEEEecCcccc-ccccccceeeeccchhcccCCCCHHHHHHhCCCCCCCEEEEEeCCCCCCCeEEEEcccCHHHcc
Confidence 679999988766542 2345899999998754 488999999999 79999999964 479999999984 68
Q ss_pred CCceEEecccCCCCCCCeEEeeeEEEECCEEecCC-CCeEEEecCCccEEeChHHHHHHHHHHHHHhcCCCCccCCCCCC
Q 025328 71 SGVAWTPMLQNSADLKHYILGPAELLYSGKSCGLK-DLTLIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKT 149 (254)
Q Consensus 71 ~~i~~~pi~~~~~~~~~y~v~l~~i~v~~~~~~~~-~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 149 (254)
+++.|+|+.. +.+|.|.+++|+|+++.+... +..+||||||+++++|+++|++|.+.+..... . ....
T Consensus 174 g~l~~~p~~~----~~~w~v~l~~v~v~g~~~~~~~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~~-----~--~~~~ 242 (317)
T cd05478 174 GSLNWVPVTA----ETYWQITVDSVTINGQVVACSGGCQAIVDTGTSLLVGPSSDIANIQSDIGASQN-----Q--NGEM 242 (317)
T ss_pred CceEEEECCC----CcEEEEEeeEEEECCEEEccCCCCEEEECCCchhhhCCHHHHHHHHHHhCCccc-----c--CCcE
Confidence 9999999975 379999999999999988653 46899999999999999999999887743211 0 1111
Q ss_pred CCcccCCCCCCcccccccCCcEEEEEccCCcceEEEecCCceEEEeCCCceEEE-EEcCCcCCCCCceeeccceeeceEE
Q 025328 150 LPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVISGRKNVCLG-ILNGSEAEVGENNIIGEIFMQDKMV 228 (254)
Q Consensus 150 ~~~C~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~i~~~~y~~~~~~~~~C~~-~~~~~~~~~~~~~iLG~~f~~~~~v 228 (254)
...|+.. ..+|.|+|+|+| ..++|||++|+... ..+|+. +...+. ...||||+.|||++|+
T Consensus 243 ~~~C~~~---------~~~P~~~f~f~g----~~~~i~~~~y~~~~--~~~C~~~~~~~~~---~~~~IlG~~fl~~~y~ 304 (317)
T cd05478 243 VVNCSSI---------SSMPDVVFTING----VQYPLPPSAYILQD--QGSCTSGFQSMGL---GELWILGDVFIRQYYS 304 (317)
T ss_pred EeCCcCc---------ccCCcEEEEECC----EEEEECHHHheecC--CCEEeEEEEeCCC---CCeEEechHHhcceEE
Confidence 2357542 368999999977 89999999999865 568984 655432 3579999999999999
Q ss_pred EEeCCCCEEeeec
Q 025328 229 IYDNEKQRIGWKP 241 (254)
Q Consensus 229 vfD~~~~rIGfa~ 241 (254)
|||++++|||||+
T Consensus 305 vfD~~~~~iG~A~ 317 (317)
T cd05478 305 VFDRANNKVGLAP 317 (317)
T ss_pred EEeCCCCEEeecC
Confidence 9999999999996
No 7
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=4e-38 Score=275.75 Aligned_cols=214 Identities=16% Similarity=0.271 Sum_probs=167.7
Q ss_pred ceEEeeccCCCCCCCCCCCCcceEeecCCCCCC------hHHHHHHhCCc-cCeEEEEecCC----CcEEEEECCCCC--
Q 025328 2 LSFCSCGYNQHNPGPLSPPDTAGVLGLGRGRIS------IVSQLREYGLI-RNVIGHCIGQN----GRGVLFLGDGKV-- 68 (254)
Q Consensus 2 ~~~fGc~~~~~~~~~~~~~~~dGIlGLg~~~~s------~~~ql~~~~~i-~~~Fs~~l~~~----~~G~l~fGg~~~-- 68 (254)
+++|||+.++.+... .....|||||||++.++ +..+|.+++++ +++||+||.++ ..|+|+|||+|+
T Consensus 85 ~~~fg~~~~~~~~~~-~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~d~~~ 163 (316)
T cd05486 85 NQQFAESVSEPGSTF-QDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVELPMFSVYMSRNPNSADGGELVFGGFDTSR 163 (316)
T ss_pred CEEEEEeeccCcccc-cccccceEeccCchhhccCCCCCHHHHHHhcCCCCCCEEEEEEccCCCCCCCcEEEEcccCHHH
Confidence 578999987765321 23568999999987654 57889999999 78999999852 479999999984
Q ss_pred CCCCceEEecccCCCCCCCeEEeeeEEEECCEEecC-CCCeEEEecCCccEEeChHHHHHHHHHHHHHhcCCCCccCCCC
Q 025328 69 PSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGL-KDLTLIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDD 147 (254)
Q Consensus 69 ~~~~i~~~pi~~~~~~~~~y~v~l~~i~v~~~~~~~-~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~ 147 (254)
+.+++.|+|+... .+|.|.+++|+|+++.+.. ....+||||||+++++|++++++|.+.+.... . ..
T Consensus 164 ~~g~l~~~pi~~~----~~w~v~l~~i~v~g~~~~~~~~~~aiiDTGTs~~~lP~~~~~~l~~~~~~~~-------~-~~ 231 (316)
T cd05486 164 FSGQLNWVPVTVQ----GYWQIQLDNIQVGGTVIFCSDGCQAIVDTGTSLITGPSGDIKQLQNYIGATA-------T-DG 231 (316)
T ss_pred cccceEEEECCCc----eEEEEEeeEEEEecceEecCCCCEEEECCCcchhhcCHHHHHHHHHHhCCcc-------c-CC
Confidence 6799999999753 7999999999999987654 34689999999999999999999877663211 1 11
Q ss_pred CCCCcccCCCCCCcccccccCCcEEEEEccCCcceEEEecCCceEEEeC--CCceEE-EEEcCCcC-CCCCceeecccee
Q 025328 148 KTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVISG--RKNVCL-GILNGSEA-EVGENNIIGEIFM 223 (254)
Q Consensus 148 ~~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~i~~~~y~~~~~--~~~~C~-~~~~~~~~-~~~~~~iLG~~f~ 223 (254)
.....|... ..+|+|+|+|+| +.++|+|++|++... .+..|+ +++..+.. ...+.||||++||
T Consensus 232 ~~~~~C~~~---------~~~p~i~f~f~g----~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~fl 298 (316)
T cd05486 232 EYGVDCSTL---------SLMPSVTFTING----IPYSLSPQAYTLEDQSDGGGYCSSGFQGLDIPPPAGPLWILGDVFI 298 (316)
T ss_pred cEEEecccc---------ccCCCEEEEECC----EEEEeCHHHeEEecccCCCCEEeeEEEECCCCCCCCCeEEEchHHh
Confidence 122356542 368999999987 999999999998752 346897 56543321 1235799999999
Q ss_pred eceEEEEeCCCCEEeeec
Q 025328 224 QDKMVIYDNEKQRIGWKP 241 (254)
Q Consensus 224 ~~~~vvfD~~~~rIGfa~ 241 (254)
|++|+|||.+++|||||+
T Consensus 299 r~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 299 RQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred cceEEEEeCCCCEeeccC
Confidence 999999999999999996
No 8
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=7.9e-38 Score=285.80 Aligned_cols=219 Identities=18% Similarity=0.358 Sum_probs=174.5
Q ss_pred ceEEeeccCCCCCCCCCCCCcceEeecCCCCC---------ChHHHHHHhCCc-cCeEEEEecC--CCcEEEEECCCCC-
Q 025328 2 LSFCSCGYNQHNPGPLSPPDTAGVLGLGRGRI---------SIVSQLREYGLI-RNVIGHCIGQ--NGRGVLFLGDGKV- 68 (254)
Q Consensus 2 ~~~fGc~~~~~~~~~~~~~~~dGIlGLg~~~~---------s~~~ql~~~~~i-~~~Fs~~l~~--~~~G~l~fGg~~~- 68 (254)
+.+|||++.+.+.. +.....|||||||++.+ +++.+|.+||++ +++||+||.+ ..+|+|+|||+|+
T Consensus 210 ~q~FG~a~~~s~~~-f~~~~~DGILGLg~~~~s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~ 288 (482)
T PTZ00165 210 HQSIGLAIEESLHP-FADLPFDGLVGLGFPDKDFKESKKALPIVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPK 288 (482)
T ss_pred cEEEEEEEeccccc-cccccccceeecCCCcccccccCCCCCHHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHH
Confidence 57899999876532 23457899999998764 467889999999 7999999974 3579999999984
Q ss_pred -C--CCCceEEecccCCCCCCCeEEeeeEEEECCEEecC--CCCeEEEecCCccEEeChHHHHHHHHHHHHHhcCCCCcc
Q 025328 69 -P--SSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGL--KDLTLIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKL 143 (254)
Q Consensus 69 -~--~~~i~~~pi~~~~~~~~~y~v~l~~i~v~~~~~~~--~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~ 143 (254)
+ .+++.|+|+... .+|+|.+++|+|+++.+.. ....+|+||||+++++|++++++|.+++...
T Consensus 289 ~~~~~g~i~~~Pv~~~----~yW~i~l~~i~vgg~~~~~~~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~-------- 356 (482)
T PTZ00165 289 YTLEGHKIWWFPVIST----DYWEIEVVDILIDGKSLGFCDRKCKAAIDTGSSLITGPSSVINPLLEKIPLE-------- 356 (482)
T ss_pred HcCCCCceEEEEcccc----ceEEEEeCeEEECCEEeeecCCceEEEEcCCCccEeCCHHHHHHHHHHcCCc--------
Confidence 2 468999999863 6999999999999987654 3578999999999999999999988766221
Q ss_pred CCCCCCCCcccCCCCCCcccccccCCcEEEEEccCC-cceEEEecCCceEEEe----CCCceEE-EEEcCCcC-CCCCce
Q 025328 144 APDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRR-NSVRLVVPPEAYLVIS----GRKNVCL-GILNGSEA-EVGENN 216 (254)
Q Consensus 144 ~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~~-~~~~~~i~~~~y~~~~----~~~~~C~-~~~~~~~~-~~~~~~ 216 (254)
..|... ..+|+|+|+|++.. ..++++++|++|+++. ..+..|+ ++...+.. +.++.|
T Consensus 357 -------~~C~~~---------~~lP~itf~f~g~~g~~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ 420 (482)
T PTZ00165 357 -------EDCSNK---------DSLPRISFVLEDVNGRKIKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLF 420 (482)
T ss_pred -------cccccc---------ccCCceEEEECCCCCceEEEEEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceE
Confidence 248653 36899999998731 2359999999999974 2346896 67764421 124679
Q ss_pred eeccceeeceEEEEeCCCCEEeeecCCCCcccc
Q 025328 217 IIGEIFMQDKMVIYDNEKQRIGWKPEDCNTLLS 249 (254)
Q Consensus 217 iLG~~f~~~~~vvfD~~~~rIGfa~~~c~~~~~ 249 (254)
|||++|||+||+|||.+|+|||||+++|+....
T Consensus 421 ILGd~Flr~yy~VFD~~n~rIGfA~a~~~~~~~ 453 (482)
T PTZ00165 421 VLGNNFIRKYYSIFDRDHMMVGLVPAKHDQSGP 453 (482)
T ss_pred EEchhhheeEEEEEeCCCCEEEEEeeccCCCCC
Confidence 999999999999999999999999999876543
No 9
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=9.5e-38 Score=274.39 Aligned_cols=215 Identities=15% Similarity=0.251 Sum_probs=168.4
Q ss_pred ceEEeeccCCCCCCCCCCCCcceEeecCCCCC------ChHHHHHHhCCc-cCeEEEEecCC----CcEEEEECCCCC--
Q 025328 2 LSFCSCGYNQHNPGPLSPPDTAGVLGLGRGRI------SIVSQLREYGLI-RNVIGHCIGQN----GRGVLFLGDGKV-- 68 (254)
Q Consensus 2 ~~~fGc~~~~~~~~~~~~~~~dGIlGLg~~~~------s~~~ql~~~~~i-~~~Fs~~l~~~----~~G~l~fGg~~~-- 68 (254)
++.|||++++.+.. +.....+||||||++.+ +++.+|.+++++ +++||+||.++ .+|+|+|||+|+
T Consensus 93 ~~~Fg~~~~~~~~~-~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~ 171 (325)
T cd05490 93 GQLFGEAVKQPGIT-FIAAKFDGILGMAYPRISVDGVTPVFDNIMAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKY 171 (325)
T ss_pred CEEEEEEeeccCCc-ccceeeeEEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHH
Confidence 57899998876532 13456899999998765 466799999998 79999999842 379999999984
Q ss_pred CCCCceEEecccCCCCCCCeEEeeeEEEECCEEecC-CCCeEEEecCCccEEeChHHHHHHHHHHHHHhcCCCCccCCCC
Q 025328 69 PSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGL-KDLTLIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDD 147 (254)
Q Consensus 69 ~~~~i~~~pi~~~~~~~~~y~v~l~~i~v~~~~~~~-~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~ 147 (254)
+.+++.|+|+.+. .+|.|++++|+|+++.... ....+||||||+++++|++++++|.+++... . .. ..
T Consensus 172 ~~g~l~~~~~~~~----~~w~v~l~~i~vg~~~~~~~~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~-~-----~~-~~ 240 (325)
T cd05490 172 YTGDLHYVNVTRK----AYWQIHMDQVDVGSGLTLCKGGCEAIVDTGTSLITGPVEEVRALQKAIGAV-P-----LI-QG 240 (325)
T ss_pred cCCceEEEEcCcc----eEEEEEeeEEEECCeeeecCCCCEEEECCCCccccCCHHHHHHHHHHhCCc-c-----cc-CC
Confidence 5799999999753 6899999999999875432 3568999999999999999999999887432 1 11 12
Q ss_pred CCCCcccCCCCCCcccccccCCcEEEEEccCCcceEEEecCCceEEEeCC--CceEE-EEEcCCc-CCCCCceeecccee
Q 025328 148 KTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVISGR--KNVCL-GILNGSE-AEVGENNIIGEIFM 223 (254)
Q Consensus 148 ~~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~i~~~~y~~~~~~--~~~C~-~~~~~~~-~~~~~~~iLG~~f~ 223 (254)
.+...|... ..+|+|+|+|+| ..++|+|++|++.... ...|+ +++..+. ......||||++||
T Consensus 241 ~~~~~C~~~---------~~~P~i~f~fgg----~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilGd~fl 307 (325)
T cd05490 241 EYMIDCEKI---------PTLPVISFSLGG----KVYPLTGEDYILKVSQRGTTICLSGFMGLDIPPPAGPLWILGDVFI 307 (325)
T ss_pred CEEeccccc---------ccCCCEEEEECC----EEEEEChHHeEEeccCCCCCEEeeEEEECCCCCCCCceEEEChHhh
Confidence 233457652 368999999987 8999999999997542 35798 5654321 11245799999999
Q ss_pred eceEEEEeCCCCEEeeec
Q 025328 224 QDKMVIYDNEKQRIGWKP 241 (254)
Q Consensus 224 ~~~~vvfD~~~~rIGfa~ 241 (254)
|++|+|||++++|||||+
T Consensus 308 r~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 308 GRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred eeeEEEEEcCCcEeeccC
Confidence 999999999999999995
No 10
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=7.8e-38 Score=271.12 Aligned_cols=209 Identities=19% Similarity=0.349 Sum_probs=170.9
Q ss_pred ceEEeeccCCCCCCCCCCCCcceEeecCCCCC-----------ChHHHHHHhCCc-cCeEEEEecC--CCcEEEEECCCC
Q 025328 2 LSFCSCGYNQHNPGPLSPPDTAGVLGLGRGRI-----------SIVSQLREYGLI-RNVIGHCIGQ--NGRGVLFLGDGK 67 (254)
Q Consensus 2 ~~~fGc~~~~~~~~~~~~~~~dGIlGLg~~~~-----------s~~~ql~~~~~i-~~~Fs~~l~~--~~~G~l~fGg~~ 67 (254)
++.|||+++. ...+||||||++.. +++.||.++++| +++||+||.+ ...|.|+|||+|
T Consensus 60 ~~~fg~~~~~--------~~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g~i~~~~Fsl~l~~~~~~~g~l~~Gg~d 131 (295)
T cd05474 60 NLQFAVANST--------SSDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQGLIKKNAYSLYLNDLDASTGSILFGGVD 131 (295)
T ss_pred ceEEEEEecC--------CCCcceeeECCCCCcccccCCCcCCCHHHHHHHCCcccceEEEEEeCCCCCCceeEEEeeec
Confidence 5789999974 24689999998775 689999999999 7999999996 368999999998
Q ss_pred C--CCCCceEEecccCCC--CCCCeEEeeeEEEECCEEec----CCCCeEEEecCCccEEeChHHHHHHHHHHHHHhcCC
Q 025328 68 V--PSSGVAWTPMLQNSA--DLKHYILGPAELLYSGKSCG----LKDLTLIFDSGASYAYFTSRVYQEIVSLIMRDLIGT 139 (254)
Q Consensus 68 ~--~~~~i~~~pi~~~~~--~~~~y~v~l~~i~v~~~~~~----~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~ 139 (254)
+ +.+++.|+|+..... ...+|.|.+++|+++++.+. .....++|||||++++||++++++|.+++......
T Consensus 132 ~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~~- 210 (295)
T cd05474 132 TAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLPALLDSGTTLTYLPSDIVDAIAKQLGATYDS- 210 (295)
T ss_pred cceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCCCccEEECCCCccEeCCHHHHHHHHHHhCCEEcC-
Confidence 4 568999999987642 23789999999999998753 23579999999999999999999999988654331
Q ss_pred CCccCCCCCCCCcccCCCCCCcccccccCCcEEEEEccCCcceEEEecCCceEEEeCC----CceEE-EEEcCCcCCCCC
Q 025328 140 PLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVISGR----KNVCL-GILNGSEAEVGE 214 (254)
Q Consensus 140 ~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~i~~~~y~~~~~~----~~~C~-~~~~~~~~~~~~ 214 (254)
. .......|+.. .. |+|+|+|+| ++++||+++|++.... +..|+ ++...+ .+
T Consensus 211 ---~--~~~~~~~C~~~---------~~-p~i~f~f~g----~~~~i~~~~~~~~~~~~~~~~~~C~~~i~~~~----~~ 267 (295)
T cd05474 211 ---D--EGLYVVDCDAK---------DD-GSLTFNFGG----ATISVPLSDLVLPASTDDGGDGACYLGIQPST----SD 267 (295)
T ss_pred ---C--CcEEEEeCCCC---------CC-CEEEEEECC----eEEEEEHHHhEeccccCCCCCCCeEEEEEeCC----CC
Confidence 1 12233467653 13 999999988 9999999999997642 56785 777654 25
Q ss_pred ceeeccceeeceEEEEeCCCCEEeeecC
Q 025328 215 NNIIGEIFMQDKMVIYDNEKQRIGWKPE 242 (254)
Q Consensus 215 ~~iLG~~f~~~~~vvfD~~~~rIGfa~~ 242 (254)
.||||+.|||++|++||.+++|||||++
T Consensus 268 ~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 268 YNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred cEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 7999999999999999999999999985
No 11
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=5.1e-37 Score=268.98 Aligned_cols=214 Identities=17% Similarity=0.312 Sum_probs=169.3
Q ss_pred ceEEeeccCCCCCCCCCCCCcceEeecCCCC------CChHHHHHHhCCc-cCeEEEEecCC---CcEEEEECCCCC--C
Q 025328 2 LSFCSCGYNQHNPGPLSPPDTAGVLGLGRGR------ISIVSQLREYGLI-RNVIGHCIGQN---GRGVLFLGDGKV--P 69 (254)
Q Consensus 2 ~~~fGc~~~~~~~~~~~~~~~dGIlGLg~~~------~s~~~ql~~~~~i-~~~Fs~~l~~~---~~G~l~fGg~~~--~ 69 (254)
++.|||++.+.+.. +.....+||||||++. .+++.||.++|.| +++||+||.+. ..|.|+|||+|+ +
T Consensus 88 ~~~Fg~~~~~~~~~-~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~ 166 (318)
T cd05477 88 NQEFGLSETEPGTN-FVYAQFDGILGLAYPSISAGGATTVMQGMMQQNLLQAPIFSFYLSGQQGQQGGELVFGGVDNNLY 166 (318)
T ss_pred CEEEEEEEeccccc-ccccceeeEeecCcccccccCCCCHHHHHHhcCCcCCCEEEEEEcCCCCCCCCEEEEcccCHHHc
Confidence 68899999875432 1234679999999853 4788999999999 79999999853 479999999984 6
Q ss_pred CCCceEEecccCCCCCCCeEEeeeEEEECCEEecC--CCCeEEEecCCccEEeChHHHHHHHHHHHHHhcCCCCccCCCC
Q 025328 70 SSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGL--KDLTLIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDD 147 (254)
Q Consensus 70 ~~~i~~~pi~~~~~~~~~y~v~l~~i~v~~~~~~~--~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~ 147 (254)
.+++.|+|+... .+|.|.+++|+|+++++.. .+..+||||||+++++|++++++|.+.+...... ..
T Consensus 167 ~g~l~~~pv~~~----~~w~v~l~~i~v~g~~~~~~~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~~~-------~~ 235 (318)
T cd05477 167 TGQIYWTPVTSE----TYWQIGIQGFQINGQATGWCSQGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQQDQ-------YG 235 (318)
T ss_pred CCceEEEecCCc----eEEEEEeeEEEECCEEecccCCCceeeECCCCccEECCHHHHHHHHHHhCCcccc-------CC
Confidence 789999999753 6999999999999988753 2457999999999999999999999887543221 11
Q ss_pred CCCCcccCCCCCCcccccccCCcEEEEEccCCcceEEEecCCceEEEeCCCceEE-EEEcCCc--CCCCCceeeccceee
Q 025328 148 KTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVISGRKNVCL-GILNGSE--AEVGENNIIGEIFMQ 224 (254)
Q Consensus 148 ~~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~i~~~~y~~~~~~~~~C~-~~~~~~~--~~~~~~~iLG~~f~~ 224 (254)
.....|... ..+|.|+|+|++ +++++|+++|+... +.+|+ ++..... ......||||+.|||
T Consensus 236 ~~~~~C~~~---------~~~p~l~~~f~g----~~~~v~~~~y~~~~--~~~C~~~i~~~~~~~~~~~~~~ilG~~fl~ 300 (318)
T cd05477 236 QYVVNCNNI---------QNLPTLTFTING----VSFPLPPSAYILQN--NGYCTVGIEPTYLPSQNGQPLWILGDVFLR 300 (318)
T ss_pred CEEEeCCcc---------ccCCcEEEEECC----EEEEECHHHeEecC--CCeEEEEEEecccCCCCCCceEEEcHHHhh
Confidence 122346542 358999999987 99999999999875 46896 7764321 111246999999999
Q ss_pred ceEEEEeCCCCEEeeecC
Q 025328 225 DKMVIYDNEKQRIGWKPE 242 (254)
Q Consensus 225 ~~~vvfD~~~~rIGfa~~ 242 (254)
++|+|||++++|||||++
T Consensus 301 ~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 301 QYYSVYDLGNNQVGFATA 318 (318)
T ss_pred heEEEEeCCCCEEeeeeC
Confidence 999999999999999985
No 12
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=3e-37 Score=270.73 Aligned_cols=213 Identities=16% Similarity=0.259 Sum_probs=167.5
Q ss_pred ceEEeeccCCCCCCCCCCCCcceEeecCCCCCCh------HHHHHHhCCc-cCeEEEEecC--CCcEEEEECCCCC--CC
Q 025328 2 LSFCSCGYNQHNPGPLSPPDTAGVLGLGRGRISI------VSQLREYGLI-RNVIGHCIGQ--NGRGVLFLGDGKV--PS 70 (254)
Q Consensus 2 ~~~fGc~~~~~~~~~~~~~~~dGIlGLg~~~~s~------~~ql~~~~~i-~~~Fs~~l~~--~~~G~l~fGg~~~--~~ 70 (254)
++.|||++++.+.. +.....|||||||++..+. ..+|.++|+| +++||+||.+ ..+|.|+|||+|+ +.
T Consensus 95 ~~~f~~a~~~~g~~-~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~ 173 (320)
T cd05488 95 KQDFAEATSEPGLA-FAFGKFDGILGLAYDTISVNKIVPPFYNMINQGLLDEPVFSFYLGSSEEDGGEATFGGIDESRFT 173 (320)
T ss_pred CEEEEEEecCCCcc-eeeeeeceEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEecCCCCCCcEEEECCcCHHHcC
Confidence 57899998876542 1234689999999987643 3478889999 7999999985 3589999999984 57
Q ss_pred CCceEEecccCCCCCCCeEEeeeEEEECCEEecCCCCeEEEecCCccEEeChHHHHHHHHHHHHHhcCCCCccCCCCCCC
Q 025328 71 SGVAWTPMLQNSADLKHYILGPAELLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTL 150 (254)
Q Consensus 71 ~~i~~~pi~~~~~~~~~y~v~l~~i~v~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 150 (254)
+++.|+|+... .+|.|.+++|+||++.+......++|||||+++++|+++++++.+.+.+... . ...+.
T Consensus 174 g~l~~~p~~~~----~~w~v~l~~i~vg~~~~~~~~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~~------~-~~~~~ 242 (320)
T cd05488 174 GKITWLPVRRK----AYWEVELEKIGLGDEELELENTGAAIDTGTSLIALPSDLAEMLNAEIGAKKS------W-NGQYT 242 (320)
T ss_pred CceEEEeCCcC----cEEEEEeCeEEECCEEeccCCCeEEEcCCcccccCCHHHHHHHHHHhCCccc------c-CCcEE
Confidence 89999999753 6899999999999998877778999999999999999999998887743211 0 11111
Q ss_pred CcccCCCCCCcccccccCCcEEEEEccCCcceEEEecCCceEEEeCCCceEEE-EEcCCcC-CCCCceeeccceeeceEE
Q 025328 151 PICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVISGRKNVCLG-ILNGSEA-EVGENNIIGEIFMQDKMV 228 (254)
Q Consensus 151 ~~C~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~i~~~~y~~~~~~~~~C~~-~~~~~~~-~~~~~~iLG~~f~~~~~v 228 (254)
..|... ..+|.|+|+|++ ++++|||++|++.. ...|+. +...... .....||||+.|||++|+
T Consensus 243 ~~C~~~---------~~~P~i~f~f~g----~~~~i~~~~y~~~~--~g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~ 307 (320)
T cd05488 243 VDCSKV---------DSLPDLTFNFDG----YNFTLGPFDYTLEV--SGSCISAFTGMDFPEPVGPLAIVGDAFLRKYYS 307 (320)
T ss_pred eecccc---------ccCCCEEEEECC----EEEEECHHHheecC--CCeEEEEEEECcCCCCCCCeEEEchHHhhheEE
Confidence 246542 368999999987 89999999999854 457985 4433211 113479999999999999
Q ss_pred EEeCCCCEEeeec
Q 025328 229 IYDNEKQRIGWKP 241 (254)
Q Consensus 229 vfD~~~~rIGfa~ 241 (254)
|||++++|||||+
T Consensus 308 vfD~~~~~iG~a~ 320 (320)
T cd05488 308 VYDLGNNAVGLAK 320 (320)
T ss_pred EEeCCCCEEeecC
Confidence 9999999999996
No 13
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=9.5e-37 Score=271.98 Aligned_cols=235 Identities=18% Similarity=0.250 Sum_probs=173.6
Q ss_pred EeeccCCCCCCCCCCCCcceEeecCCCCC--------ChHHHHHHhCCccCeEEEEecC-----------CCcEEEEECC
Q 025328 5 CSCGYNQHNPGPLSPPDTAGVLGLGRGRI--------SIVSQLREYGLIRNVIGHCIGQ-----------NGRGVLFLGD 65 (254)
Q Consensus 5 fGc~~~~~~~~~~~~~~~dGIlGLg~~~~--------s~~~ql~~~~~i~~~Fs~~l~~-----------~~~G~l~fGg 65 (254)
|+|.++.++.+. .....|||||||++.+ +++.+|.+|+.++++||+||.. ...|.|+|||
T Consensus 89 ~~~~~~~~~~~~-~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg 167 (364)
T cd05473 89 IAAITESENFFL-NGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTGIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGG 167 (364)
T ss_pred eEEEecccccee-cccccceeeeecccccccCCCCCCCHHHHHHhccCCccceEEEecccccccccccccCCCcEEEeCC
Confidence 567665544431 2235799999998765 4667888888888899997731 1379999999
Q ss_pred CCC--CCCCceEEecccCCCCCCCeEEeeeEEEECCEEecCC-----CCeEEEecCCccEEeChHHHHHHHHHHHHHhcC
Q 025328 66 GKV--PSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGLK-----DLTLIFDSGASYAYFTSRVYQEIVSLIMRDLIG 138 (254)
Q Consensus 66 ~~~--~~~~i~~~pi~~~~~~~~~y~v~l~~i~v~~~~~~~~-----~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~ 138 (254)
+|+ +.+++.|+|+... .+|.|.+++|+|+++.+... ...+||||||++++||+++|++|.+++.++...
T Consensus 168 ~D~~~~~g~l~~~p~~~~----~~~~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~ 243 (364)
T cd05473 168 IDPSLYKGDIWYTPIREE----WYYEVIILKLEVGGQSLNLDCKEYNYDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLI 243 (364)
T ss_pred cCHhhcCCCceEEecCcc----eeEEEEEEEEEECCEecccccccccCccEEEeCCCcceeCCHHHHHHHHHHHHhhccc
Confidence 984 6889999999753 68999999999999988653 146999999999999999999999999886532
Q ss_pred CCCccCCCCCCCCcccCCCCCCcccccccCCcEEEEEccCC--cceEEEecCCceEEEeC---CCceEEEEEcCCcCCCC
Q 025328 139 TPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRR--NSVRLVVPPEAYLVISG---RKNVCLGILNGSEAEVG 213 (254)
Q Consensus 139 ~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~~--~~~~~~i~~~~y~~~~~---~~~~C~~~~~~~~~~~~ 213 (254)
..............|+.... .....+|+|+|+|++.. .+++++|+|++|+.... .+..|+++..... .
T Consensus 244 ~~~~~~~~~~~~~~C~~~~~----~~~~~~P~i~~~f~g~~~~~~~~l~l~p~~Y~~~~~~~~~~~~C~~~~~~~~---~ 316 (364)
T cd05473 244 EDFPDGFWLGSQLACWQKGT----TPWEIFPKISIYLRDENSSQSFRITILPQLYLRPVEDHGTQLDCYKFAISQS---T 316 (364)
T ss_pred ccCCccccCcceeecccccC----chHhhCCcEEEEEccCCCCceEEEEECHHHhhhhhccCCCcceeeEEeeecC---C
Confidence 10100000111236876421 11136899999998631 23688999999998642 2468986443221 3
Q ss_pred CceeeccceeeceEEEEeCCCCEEeeecCCCCcccccC
Q 025328 214 ENNIIGEIFMQDKMVIYDNEKQRIGWKPEDCNTLLSLN 251 (254)
Q Consensus 214 ~~~iLG~~f~~~~~vvfD~~~~rIGfa~~~c~~~~~~~ 251 (254)
+.||||++|||++|+|||++++|||||+++|...+..+
T Consensus 317 ~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C~~~~~~~ 354 (364)
T cd05473 317 NGTVIGAVIMEGFYVVFDRANKRVGFAVSTCAEHDGFR 354 (364)
T ss_pred CceEEeeeeEcceEEEEECCCCEEeeEecccccccCcc
Confidence 46999999999999999999999999999999887654
No 14
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-36 Score=273.30 Aligned_cols=227 Identities=26% Similarity=0.502 Sum_probs=183.1
Q ss_pred ceEEeeccCCCCCCCCCCCCcceEeecCCCCCChHHHHHHhCCccCeEEEEecCC-----CcEEEEECCCCC--CCCCce
Q 025328 2 LSFCSCGYNQHNPGPLSPPDTAGVLGLGRGRISIVSQLREYGLIRNVIGHCIGQN-----GRGVLFLGDGKV--PSSGVA 74 (254)
Q Consensus 2 ~~~fGc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~~Fs~~l~~~-----~~G~l~fGg~~~--~~~~i~ 74 (254)
+++|||++++.+.+... .+.|||||||++++|++.|+.......++||+||.+. .+|.|+||+.|. ..+.+.
T Consensus 154 ~~~FGc~~~~~g~~~~~-~~~dGIlGLg~~~~S~~~q~~~~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~ 232 (398)
T KOG1339|consen 154 NQTFGCGTNNPGSFGLF-AAFDGILGLGRGSLSVPSQLPSFYNAINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLT 232 (398)
T ss_pred cEEEEeeecCccccccc-cccceEeecCCCCccceeecccccCCceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceE
Confidence 58999999997752222 5789999999999999999998766667999999954 379999999985 467899
Q ss_pred EEecccCCCCCCCeEEeeeEEEECCEE------ecCCCCeEEEecCCccEEeChHHHHHHHHHHHHHhcCCCCccCCCCC
Q 025328 75 WTPMLQNSADLKHYILGPAELLYSGKS------CGLKDLTLIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDK 148 (254)
Q Consensus 75 ~~pi~~~~~~~~~y~v~l~~i~v~~~~------~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~ 148 (254)
|||++.+.. .+|.|.+++|+|+++. +......+|+||||++++||+++|++|.+++.+... . ......
T Consensus 233 ~tPl~~~~~--~~y~v~l~~I~vgg~~~~~~~~~~~~~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~---~-~~~~~~ 306 (398)
T KOG1339|consen 233 YTPLLSNPS--TYYQVNLDGISVGGKRPIGSSLFCTDGGGAIIDSGTSLTYLPTSAYNALREAIGAEVS---V-VGTDGE 306 (398)
T ss_pred EEeeccCCC--ccEEEEEeEEEECCccCCCcceEecCCCCEEEECCcceeeccHHHHHHHHHHHHhhee---c-cccCCc
Confidence 999998752 5999999999999843 222247899999999999999999999999988641 0 011234
Q ss_pred CCCcccCCCCCCcccccccCCcEEEEEccCCcceEEEecCCceEEEeCCCce-EEEEEcCCcCCCCCceeeccceeeceE
Q 025328 149 TLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVISGRKNV-CLGILNGSEAEVGENNIIGEIFMQDKM 227 (254)
Q Consensus 149 ~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~i~~~~y~~~~~~~~~-C~~~~~~~~~~~~~~~iLG~~f~~~~~ 227 (254)
++..|+...... ..+|.|+|+|++ ++.|.+++++|++....+.. |+++...... ...||||+.+||+++
T Consensus 307 ~~~~C~~~~~~~-----~~~P~i~~~f~~---g~~~~l~~~~y~~~~~~~~~~Cl~~~~~~~~--~~~~ilG~~~~~~~~ 376 (398)
T KOG1339|consen 307 YFVPCFSISTSG-----VKLPDITFHFGG---GAVFSLPPKNYLVEVSDGGGVCLAFFNGMDS--GPLWILGDVFQQNYL 376 (398)
T ss_pred eeeecccCCCCc-----ccCCcEEEEECC---CcEEEeCccceEEEECCCCCceeeEEecCCC--CceEEEchHHhCCEE
Confidence 556899863111 358999999996 59999999999998765544 9987765431 158999999999999
Q ss_pred EEEeCC-CCEEeeec--CCCC
Q 025328 228 VIYDNE-KQRIGWKP--EDCN 245 (254)
Q Consensus 228 vvfD~~-~~rIGfa~--~~c~ 245 (254)
++||.. ++|||||+ ..|+
T Consensus 377 ~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 377 VVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred EEEeCCCCCEEEeccccccCC
Confidence 999999 99999999 7775
No 15
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=1.2e-36 Score=267.93 Aligned_cols=215 Identities=14% Similarity=0.229 Sum_probs=169.8
Q ss_pred ceEEeeccCCCCCCCCCCCCcceEeecCCCCCC------hHHHHHHhCCc-cCeEEEEecCC----CcEEEEECCCCC--
Q 025328 2 LSFCSCGYNQHNPGPLSPPDTAGVLGLGRGRIS------IVSQLREYGLI-RNVIGHCIGQN----GRGVLFLGDGKV-- 68 (254)
Q Consensus 2 ~~~fGc~~~~~~~~~~~~~~~dGIlGLg~~~~s------~~~ql~~~~~i-~~~Fs~~l~~~----~~G~l~fGg~~~-- 68 (254)
+++|||+.++.+.. +.....+||||||++..+ ++.+|+++++| +++||+||.+. ..|+|+|||+|+
T Consensus 98 ~~~fg~~~~~~~~~-~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~ 176 (329)
T cd05485 98 GQTFAEAINEPGLT-FVAAKFDGILGMGYSSISVDGVVPVFYNMVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKH 176 (329)
T ss_pred CEEEEEEEecCCcc-ccccccceEEEcCCccccccCCCCHHHHHHhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHH
Confidence 57899998876532 234568999999998654 46899999999 79999999842 479999999984
Q ss_pred CCCCceEEecccCCCCCCCeEEeeeEEEECCEEecCCCCeEEEecCCccEEeChHHHHHHHHHHHHHhcCCCCccCCCCC
Q 025328 69 PSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDK 148 (254)
Q Consensus 69 ~~~~i~~~pi~~~~~~~~~y~v~l~~i~v~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~ 148 (254)
+.+++.|+|+.. +.+|.|.+++++++++.+......+||||||+++++|++++++|.+++.... .....
T Consensus 177 ~~g~l~~~p~~~----~~~~~v~~~~i~v~~~~~~~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~-------~~~~~ 245 (329)
T cd05485 177 YTGNFTYLPVTR----KGYWQFKMDSVSVGEGEFCSGGCQAIADTGTSLIAGPVDEIEKLNNAIGAKP-------IIGGE 245 (329)
T ss_pred cccceEEEEcCC----ceEEEEEeeEEEECCeeecCCCcEEEEccCCcceeCCHHHHHHHHHHhCCcc-------ccCCc
Confidence 578999999975 3799999999999998876556789999999999999999999988774321 11112
Q ss_pred CCCcccCCCCCCcccccccCCcEEEEEccCCcceEEEecCCceEEEeCC--CceEE-EEEcCCc-CCCCCceeeccceee
Q 025328 149 TLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVISGR--KNVCL-GILNGSE-AEVGENNIIGEIFMQ 224 (254)
Q Consensus 149 ~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~i~~~~y~~~~~~--~~~C~-~~~~~~~-~~~~~~~iLG~~f~~ 224 (254)
+...|... ..+|+|+|+|++ ++++|+|++|+++..+ ..+|+ +++.... ....+.||||+.|||
T Consensus 246 ~~~~C~~~---------~~~p~i~f~fgg----~~~~i~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~ 312 (329)
T cd05485 246 YMVNCSAI---------PSLPDITFVLGG----KSFSLTGKDYVLKVTQMGQTICLSGFMGIDIPPPAGPLWILGDVFIG 312 (329)
T ss_pred EEEecccc---------ccCCcEEEEECC----EEeEEChHHeEEEecCCCCCEEeeeEEECcCCCCCCCeEEEchHHhc
Confidence 23356542 357999999987 9999999999997642 36898 5664321 112357999999999
Q ss_pred ceEEEEeCCCCEEeeec
Q 025328 225 DKMVIYDNEKQRIGWKP 241 (254)
Q Consensus 225 ~~~vvfD~~~~rIGfa~ 241 (254)
++|+|||++++|||||.
T Consensus 313 ~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 313 KYYTEFDLGNNRVGFAT 329 (329)
T ss_pred cceEEEeCCCCEEeecC
Confidence 99999999999999984
No 16
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=2.1e-36 Score=265.06 Aligned_cols=203 Identities=21% Similarity=0.326 Sum_probs=161.1
Q ss_pred ceEEeeccCCCCCCCCCCCCcceEeecCCCCCC------hHHHHHHhCCc-cCeEEEEecCC----CcEEEEECCCCC--
Q 025328 2 LSFCSCGYNQHNPGPLSPPDTAGVLGLGRGRIS------IVSQLREYGLI-RNVIGHCIGQN----GRGVLFLGDGKV-- 68 (254)
Q Consensus 2 ~~~fGc~~~~~~~~~~~~~~~dGIlGLg~~~~s------~~~ql~~~~~i-~~~Fs~~l~~~----~~G~l~fGg~~~-- 68 (254)
++.|||++.+.+.. +.....|||||||++..+ ++.+|.++|+| +++||+||.+. ..|+|+|||+|+
T Consensus 96 ~~~f~~~~~~~~~~-~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~ 174 (317)
T cd06098 96 NQVFIEATKEPGLT-FLLAKFDGILGLGFQEISVGKAVPVWYNMVEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKH 174 (317)
T ss_pred CEEEEEEEecCCcc-ccccccceeccccccchhhcCCCCHHHHHHhcCCCCCCEEEEEEecCCCCCCCcEEEECccChhh
Confidence 57899998775432 234568999999987643 56789999998 78999999742 479999999984
Q ss_pred CCCCceEEecccCCCCCCCeEEeeeEEEECCEEecC--CCCeEEEecCCccEEeChHHHHHHHHHHHHHhcCCCCccCCC
Q 025328 69 PSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGL--KDLTLIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPD 146 (254)
Q Consensus 69 ~~~~i~~~pi~~~~~~~~~y~v~l~~i~v~~~~~~~--~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~ 146 (254)
+.+++.|+|+... .+|.|.+++|+|+++++.. ....+||||||+++++|+++++++.
T Consensus 175 ~~g~l~~~pv~~~----~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~~~~~~i~----------------- 233 (317)
T cd06098 175 FKGEHTYVPVTRK----GYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPTTIVTQIN----------------- 233 (317)
T ss_pred cccceEEEecCcC----cEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCHHHHHhhh-----------------
Confidence 5799999999753 6899999999999988654 2468999999999999998776553
Q ss_pred CCCCCcccCCCCCCcccccccCCcEEEEEccCCcceEEEecCCceEEEeCC--CceEE-EEEcCCcC-CCCCceeeccce
Q 025328 147 DKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVISGR--KNVCL-GILNGSEA-EVGENNIIGEIF 222 (254)
Q Consensus 147 ~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~i~~~~y~~~~~~--~~~C~-~~~~~~~~-~~~~~~iLG~~f 222 (254)
....|+.. ..+|+|+|+|+| ..++|+|++|+++..+ ...|+ +++..+.. ..+..||||++|
T Consensus 234 --~~~~C~~~---------~~~P~i~f~f~g----~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlGd~F 298 (317)
T cd06098 234 --SAVDCNSL---------SSMPNVSFTIGG----KTFELTPEQYILKVGEGAAAQCISGFTALDVPPPRGPLWILGDVF 298 (317)
T ss_pred --ccCCcccc---------ccCCcEEEEECC----EEEEEChHHeEEeecCCCCCEEeceEEECCCCCCCCCeEEechHH
Confidence 11248753 358999999987 9999999999987643 35897 56543311 124579999999
Q ss_pred eeceEEEEeCCCCEEeeec
Q 025328 223 MQDKMVIYDNEKQRIGWKP 241 (254)
Q Consensus 223 ~~~~~vvfD~~~~rIGfa~ 241 (254)
||++|+|||++++|||||+
T Consensus 299 lr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 299 MGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred hcccEEEEeCCCCEEeecC
Confidence 9999999999999999995
No 17
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=1.8e-36 Score=266.44 Aligned_cols=214 Identities=12% Similarity=0.206 Sum_probs=167.5
Q ss_pred eEEeeccCCCCCCCCCCCCcceEeecCCCCC------ChHHHHHHhCCc-cCeEEEEecCC----CcEEEEECCCCC--C
Q 025328 3 SFCSCGYNQHNPGPLSPPDTAGVLGLGRGRI------SIVSQLREYGLI-RNVIGHCIGQN----GRGVLFLGDGKV--P 69 (254)
Q Consensus 3 ~~fGc~~~~~~~~~~~~~~~dGIlGLg~~~~------s~~~ql~~~~~i-~~~Fs~~l~~~----~~G~l~fGg~~~--~ 69 (254)
.+|||+.+.... .+.....|||||||++.. +++.+|.+||+| +++||+||.+. ..|+|+|||+|+ +
T Consensus 95 ~~fg~~~~~~~~-~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y 173 (326)
T cd05487 95 QMFGEVTALPAI-PFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMSQGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHY 173 (326)
T ss_pred EEEEEEEeccCC-ccceeecceEEecCChhhcccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhc
Confidence 469998875321 112346899999998754 467789999999 79999999852 479999999984 6
Q ss_pred CCCceEEecccCCCCCCCeEEeeeEEEECCEEecCC-CCeEEEecCCccEEeChHHHHHHHHHHHHHhcCCCCccCCCCC
Q 025328 70 SSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGLK-DLTLIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDK 148 (254)
Q Consensus 70 ~~~i~~~pi~~~~~~~~~y~v~l~~i~v~~~~~~~~-~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~ 148 (254)
.+++.|+|+... .+|.|.+++++|+++.+... ...+||||||+++++|+++++++.+++..... ...
T Consensus 174 ~g~l~~~~~~~~----~~w~v~l~~i~vg~~~~~~~~~~~aiiDSGts~~~lP~~~~~~l~~~~~~~~~--------~~~ 241 (326)
T cd05487 174 QGDFHYINTSKT----GFWQIQMKGVSVGSSTLLCEDGCTAVVDTGASFISGPTSSISKLMEALGAKER--------LGD 241 (326)
T ss_pred cCceEEEECCcC----ceEEEEecEEEECCEEEecCCCCEEEECCCccchhCcHHHHHHHHHHhCCccc--------CCC
Confidence 799999999753 68999999999999887543 46899999999999999999999887743211 112
Q ss_pred CCCcccCCCCCCcccccccCCcEEEEEccCCcceEEEecCCceEEEeCC--CceEE-EEEcCCcC-CCCCceeeccceee
Q 025328 149 TLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVISGR--KNVCL-GILNGSEA-EVGENNIIGEIFMQ 224 (254)
Q Consensus 149 ~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~i~~~~y~~~~~~--~~~C~-~~~~~~~~-~~~~~~iLG~~f~~ 224 (254)
+...|... ..+|.|+|+|++ ..++|++++|++...+ +..|+ ++...+.. +.++.||||+.|||
T Consensus 242 y~~~C~~~---------~~~P~i~f~fgg----~~~~v~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~flr 308 (326)
T cd05487 242 YVVKCNEV---------PTLPDISFHLGG----KEYTLSSSDYVLQDSDFSDKLCTVAFHAMDIPPPTGPLWVLGATFIR 308 (326)
T ss_pred EEEecccc---------CCCCCEEEEECC----EEEEeCHHHhEEeccCCCCCEEEEEEEeCCCCCCCCCeEEEehHHhh
Confidence 23357652 368999999977 8999999999997543 46897 56654321 12357999999999
Q ss_pred ceEEEEeCCCCEEeeecC
Q 025328 225 DKMVIYDNEKQRIGWKPE 242 (254)
Q Consensus 225 ~~~vvfD~~~~rIGfa~~ 242 (254)
++|+|||++++|||||++
T Consensus 309 ~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 309 KFYTEFDRQNNRIGFALA 326 (326)
T ss_pred ccEEEEeCCCCEEeeeeC
Confidence 999999999999999975
No 18
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=2.9e-36 Score=265.05 Aligned_cols=193 Identities=22% Similarity=0.407 Sum_probs=155.5
Q ss_pred ceEEeeccCCCCCCCCCCCCcceEeecCCCCCC----hHHHHHHhCCc-c--CeEEEEecCCCcEEEEECCCCC--CC--
Q 025328 2 LSFCSCGYNQHNPGPLSPPDTAGVLGLGRGRIS----IVSQLREYGLI-R--NVIGHCIGQNGRGVLFLGDGKV--PS-- 70 (254)
Q Consensus 2 ~~~fGc~~~~~~~~~~~~~~~dGIlGLg~~~~s----~~~ql~~~~~i-~--~~Fs~~l~~~~~G~l~fGg~~~--~~-- 70 (254)
+++|||+..+.+.+. .+..+||||||+...+ ...++.+++.+ . ++||+||.++ .|+|+||++|+ ..
T Consensus 112 ~~~fg~~~~~~~~~~--~~~~~GilGLg~~~~~~~~~~~~~l~~~~~~~~~~~~FS~~l~~~-~G~l~~Gg~d~~~~~~~ 188 (326)
T cd06096 112 KKIFGCHTHETNLFL--TQQATGILGLSLTKNNGLPTPIILLFTKRPKLKKDKIFSICLSED-GGELTIGGYDKDYTVRN 188 (326)
T ss_pred cEEeccCccccCccc--ccccceEEEccCCcccccCchhHHHHHhcccccCCceEEEEEcCC-CeEEEECccChhhhccc
Confidence 367999999877653 4578999999998642 22335555544 3 8999999974 79999999984 23
Q ss_pred --------CCceEEecccCCCCCCCeEEeeeEEEECCEE--e-cCCCCeEEEecCCccEEeChHHHHHHHHHHHHHhcCC
Q 025328 71 --------SGVAWTPMLQNSADLKHYILGPAELLYSGKS--C-GLKDLTLIFDSGASYAYFTSRVYQEIVSLIMRDLIGT 139 (254)
Q Consensus 71 --------~~i~~~pi~~~~~~~~~y~v~l~~i~v~~~~--~-~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~ 139 (254)
+++.|+|+... .+|.|.+++|+|+++. . ......+||||||++++||+++|++|.+++
T Consensus 189 ~~~~~~~~~~~~~~p~~~~----~~y~v~l~~i~vg~~~~~~~~~~~~~aivDSGTs~~~lp~~~~~~l~~~~------- 257 (326)
T cd06096 189 SSIGNNKVSKIVWTPITRK----YYYYVKLEGLSVYGTTSNSGNTKGLGMLVDSGSTLSHFPEDLYNKINNFF------- 257 (326)
T ss_pred ccccccccCCceEEeccCC----ceEEEEEEEEEEcccccceecccCCCEEEeCCCCcccCCHHHHHHHHhhc-------
Confidence 78999999864 6899999999999875 2 234679999999999999999998875322
Q ss_pred CCccCCCCCCCCcccCCCCCCcccccccCCcEEEEEccCCcceEEEecCCceEEEeCCCceEEEEEcCCcCCCCCceeec
Q 025328 140 PLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVISGRKNVCLGILNGSEAEVGENNIIG 219 (254)
Q Consensus 140 ~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~i~~~~y~~~~~~~~~C~~~~~~~~~~~~~~~iLG 219 (254)
|+|+|+|++ ++.++++|++|++......+|+++... .+.+|||
T Consensus 258 -----------------------------P~i~~~f~~---g~~~~i~p~~y~~~~~~~~c~~~~~~~-----~~~~ILG 300 (326)
T cd06096 258 -----------------------------PTITIIFEN---NLKIDWKPSSYLYKKESFWCKGGEKSV-----SNKPILG 300 (326)
T ss_pred -----------------------------CcEEEEEcC---CcEEEECHHHhccccCCceEEEEEecC-----CCceEEC
Confidence 799999995 499999999999976544455555433 2579999
Q ss_pred cceeeceEEEEeCCCCEEeeecCCCC
Q 025328 220 EIFMQDKMVIYDNEKQRIGWKPEDCN 245 (254)
Q Consensus 220 ~~f~~~~~vvfD~~~~rIGfa~~~c~ 245 (254)
++|||++|+|||++++|||||+++|.
T Consensus 301 ~~flr~~y~vFD~~~~riGfa~~~C~ 326 (326)
T cd06096 301 ASFFKNKQIIFDLDNNRIGFVESNCP 326 (326)
T ss_pred hHHhcCcEEEEECcCCEEeeEcCCCC
Confidence 99999999999999999999999994
No 19
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=9.8e-35 Score=263.22 Aligned_cols=212 Identities=16% Similarity=0.248 Sum_probs=162.0
Q ss_pred eEEeeccCCCCCCC-CCCCCcceEeecCCCCC------ChHHHHHHhCCc-cCeEEEEecC--CCcEEEEECCCCC--CC
Q 025328 3 SFCSCGYNQHNPGP-LSPPDTAGVLGLGRGRI------SIVSQLREYGLI-RNVIGHCIGQ--NGRGVLFLGDGKV--PS 70 (254)
Q Consensus 3 ~~fGc~~~~~~~~~-~~~~~~dGIlGLg~~~~------s~~~ql~~~~~i-~~~Fs~~l~~--~~~G~l~fGg~~~--~~ 70 (254)
.+|||+.++..... +.....|||||||++.+ +++.+|+++++| +++||+||++ ...|.|+|||+|+ +.
T Consensus 223 ~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~ 302 (450)
T PTZ00013 223 YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYE 302 (450)
T ss_pred cEEEEEEeccccccceecccccceecccCCccccccCCCHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccc
Confidence 47889876643211 12346899999999765 467899999999 7899999984 3589999999984 57
Q ss_pred CCceEEecccCCCCCCCeEEeeeEEEECCEEecCCCCeEEEecCCccEEeChHHHHHHHHHHHHHhcCCCCccCCCCCCC
Q 025328 71 SGVAWTPMLQNSADLKHYILGPAELLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTL 150 (254)
Q Consensus 71 ~~i~~~pi~~~~~~~~~y~v~l~~i~v~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 150 (254)
+++.|+|+.. +.+|.|.++ +.+|.... ....+|+||||+++++|+++++++.+.+..... .. .....
T Consensus 303 G~L~y~pv~~----~~yW~I~l~-v~~G~~~~--~~~~aIlDSGTSli~lP~~~~~~i~~~l~~~~~----~~--~~~y~ 369 (450)
T PTZ00013 303 GNITYEKLNH----DLYWQIDLD-VHFGKQTM--QKANVIVDSGTTTITAPSEFLNKFFANLNVIKV----PF--LPFYV 369 (450)
T ss_pred cceEEEEcCc----CceEEEEEE-EEECceec--cccceEECCCCccccCCHHHHHHHHHHhCCeec----CC--CCeEE
Confidence 9999999964 369999998 77775543 367899999999999999999988877643210 00 11123
Q ss_pred CcccCCCCCCcccccccCCcEEEEEccCCcceEEEecCCceEEEe--CCCceEE-EEEcCCcCCCCCceeeccceeeceE
Q 025328 151 PICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVIS--GRKNVCL-GILNGSEAEVGENNIIGEIFMQDKM 227 (254)
Q Consensus 151 ~~C~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~i~~~~y~~~~--~~~~~C~-~~~~~~~~~~~~~~iLG~~f~~~~~ 227 (254)
..|+. ..+|+|+|+++| ..++|+|++|+... ..+..|+ ++...+. ..+.||||++|||++|
T Consensus 370 ~~C~~----------~~lP~i~F~~~g----~~~~L~p~~Yi~~~~~~~~~~C~~~i~~~~~--~~~~~ILGd~FLr~~Y 433 (450)
T PTZ00013 370 TTCDN----------KEMPTLEFKSAN----NTYTLEPEYYMNPLLDVDDTLCMITMLPVDI--DDNTFILGDPFMRKYF 433 (450)
T ss_pred eecCC----------CCCCeEEEEECC----EEEEECHHHheehhccCCCCeeEEEEEECCC--CCCCEEECHHHhccEE
Confidence 35754 257999999988 89999999999753 2346897 5655432 1357999999999999
Q ss_pred EEEeCCCCEEeeecCC
Q 025328 228 VIYDNEKQRIGWKPED 243 (254)
Q Consensus 228 vvfD~~~~rIGfa~~~ 243 (254)
+|||++++|||||+++
T Consensus 434 ~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 434 TVFDYDKESVGFAIAK 449 (450)
T ss_pred EEEECCCCEEEEEEeC
Confidence 9999999999999875
No 20
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=1.2e-34 Score=263.08 Aligned_cols=212 Identities=17% Similarity=0.239 Sum_probs=164.0
Q ss_pred eEEeeccCCCCCC-CCCCCCcceEeecCCCCCC------hHHHHHHhCCc-cCeEEEEecC--CCcEEEEECCCCC--CC
Q 025328 3 SFCSCGYNQHNPG-PLSPPDTAGVLGLGRGRIS------IVSQLREYGLI-RNVIGHCIGQ--NGRGVLFLGDGKV--PS 70 (254)
Q Consensus 3 ~~fGc~~~~~~~~-~~~~~~~dGIlGLg~~~~s------~~~ql~~~~~i-~~~Fs~~l~~--~~~G~l~fGg~~~--~~ 70 (254)
.+|||++++.+.. .......|||||||++.++ ++.+|.++++| +++||+||++ ...|.|+|||+|. +.
T Consensus 224 ~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~ 303 (453)
T PTZ00147 224 YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDPYVVELKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYE 303 (453)
T ss_pred EEEEEEEeccCcccccccccccceecccCCccccccCCCHHHHHHHcCCCCccEEEEEecCCCCCCeEEEECCcChhhcC
Confidence 4689988765421 1234568999999998654 56789999999 7899999985 3579999999984 57
Q ss_pred CCceEEecccCCCCCCCeEEeeeEEEECCEEecCCCCeEEEecCCccEEeChHHHHHHHHHHHHHhcCCCCccCCCCCCC
Q 025328 71 SGVAWTPMLQNSADLKHYILGPAELLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTL 150 (254)
Q Consensus 71 ~~i~~~pi~~~~~~~~~y~v~l~~i~v~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 150 (254)
+++.|+|+.. ..+|.|.++ +.+++... ....+||||||+++++|+++++++.+.+..... .. .....
T Consensus 304 G~l~y~pl~~----~~~W~V~l~-~~vg~~~~--~~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~~----~~--~~~y~ 370 (453)
T PTZ00147 304 GPLTYEKLNH----DLYWQVDLD-VHFGNVSS--EKANVIVDSGTSVITVPTEFLNKFVESLDVFKV----PF--LPLYV 370 (453)
T ss_pred CceEEEEcCC----CceEEEEEE-EEECCEec--CceeEEECCCCchhcCCHHHHHHHHHHhCCeec----CC--CCeEE
Confidence 9999999964 368999998 57877543 467899999999999999999999887743211 11 11122
Q ss_pred CcccCCCCCCcccccccCCcEEEEEccCCcceEEEecCCceEEEeCC--CceEE-EEEcCCcCCCCCceeeccceeeceE
Q 025328 151 PICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVISGR--KNVCL-GILNGSEAEVGENNIIGEIFMQDKM 227 (254)
Q Consensus 151 ~~C~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~i~~~~y~~~~~~--~~~C~-~~~~~~~~~~~~~~iLG~~f~~~~~ 227 (254)
..|+. ..+|+++|+|++ ..++|+|++|+....+ ...|+ ++...+. ..+.||||++|||++|
T Consensus 371 ~~C~~----------~~lP~~~f~f~g----~~~~L~p~~yi~~~~~~~~~~C~~~i~~~~~--~~~~~ILGd~FLr~~Y 434 (453)
T PTZ00147 371 TTCNN----------TKLPTLEFRSPN----KVYTLEPEYYLQPIEDIGSALCMLNIIPIDL--EKNTFILGDPFMRKYF 434 (453)
T ss_pred EeCCC----------CCCCeEEEEECC----EEEEECHHHheeccccCCCcEEEEEEEECCC--CCCCEEECHHHhccEE
Confidence 35764 257999999987 8999999999986432 35797 5765442 1357999999999999
Q ss_pred EEEeCCCCEEeeecCC
Q 025328 228 VIYDNEKQRIGWKPED 243 (254)
Q Consensus 228 vvfD~~~~rIGfa~~~ 243 (254)
+|||++++|||||+++
T Consensus 435 tVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 435 TVFDYDNHTVGFALAK 450 (453)
T ss_pred EEEECCCCEEEEEEec
Confidence 9999999999999975
No 21
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=4e-32 Score=233.77 Aligned_cols=180 Identities=14% Similarity=0.222 Sum_probs=140.5
Q ss_pred ceEEeeccCCCCCCCCCCCCcceEeecCCCCC---------ChHHHHHHhCCccCeEEEEecCCCcEEEEECCCCC--CC
Q 025328 2 LSFCSCGYNQHNPGPLSPPDTAGVLGLGRGRI---------SIVSQLREYGLIRNVIGHCIGQNGRGVLFLGDGKV--PS 70 (254)
Q Consensus 2 ~~~fGc~~~~~~~~~~~~~~~dGIlGLg~~~~---------s~~~ql~~~~~i~~~Fs~~l~~~~~G~l~fGg~~~--~~ 70 (254)
++.|||++.+++.. +.....+||||||++.. ++..+|.+++. +++||+||.+...|+|+|||+|+ +.
T Consensus 87 ~~~fg~~~~~~~~~-~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~-~~~Fs~~l~~~~~G~l~fGg~D~~~~~ 164 (278)
T cd06097 87 NQAIELATAVSASF-FSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLD-APLFTADLRKAAPGFYTFGYIDESKYK 164 (278)
T ss_pred CeEEEEEeecCccc-cccccccceeeeccccccccccCCCCCHHHHHHHhcc-CceEEEEecCCCCcEEEEeccChHHcC
Confidence 57899999876532 13457999999998754 35667777754 89999999976789999999984 68
Q ss_pred CCceEEecccCCCCCCCeEEeeeEEEECCEEe-cCCCCeEEEecCCccEEeChHHHHHHHHHHHHHhcCCCCccCCCCCC
Q 025328 71 SGVAWTPMLQNSADLKHYILGPAELLYSGKSC-GLKDLTLIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKT 149 (254)
Q Consensus 71 ~~i~~~pi~~~~~~~~~y~v~l~~i~v~~~~~-~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 149 (254)
+++.|+|+... ..+|.|.+++|+|+++.. ......++|||||+++++|+++++++.+.+.... +... ...+
T Consensus 165 g~l~~~pi~~~---~~~w~v~l~~i~v~~~~~~~~~~~~~iiDSGTs~~~lP~~~~~~l~~~l~g~~----~~~~-~~~~ 236 (278)
T cd06097 165 GEISWTPVDNS---SGFWQFTSTSYTVGGDAPWSRSGFSAIADTGTTLILLPDAIVEAYYSQVPGAY----YDSE-YGGW 236 (278)
T ss_pred CceEEEEccCC---CcEEEEEEeeEEECCcceeecCCceEEeecCCchhcCCHHHHHHHHHhCcCCc----ccCC-CCEE
Confidence 99999999864 379999999999999743 3346799999999999999999999988773211 1000 1111
Q ss_pred CCcccCCCCCCcccccccCCcEEEEEccCCcceEEEecCCceEEEeCCCceEEEEEcCCcCCCCCceeeccceeeceEEE
Q 025328 150 LPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVISGRKNVCLGILNGSEAEVGENNIIGEIFMQDKMVI 229 (254)
Q Consensus 150 ~~~C~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~i~~~~y~~~~~~~~~C~~~~~~~~~~~~~~~iLG~~f~~~~~vv 229 (254)
...|.. .+|+|+|+| .||||++|||++|+|
T Consensus 237 ~~~C~~-----------~~P~i~f~~---------------------------------------~~ilGd~fl~~~y~v 266 (278)
T cd06097 237 VFPCDT-----------TLPDLSFAV---------------------------------------FSILGDVFLKAQYVV 266 (278)
T ss_pred EEECCC-----------CCCCEEEEE---------------------------------------EEEEcchhhCceeEE
Confidence 123432 279998887 589999999999999
Q ss_pred EeCCCCEEeeec
Q 025328 230 YDNEKQRIGWKP 241 (254)
Q Consensus 230 fD~~~~rIGfa~ 241 (254)
||++|+|||||+
T Consensus 267 fD~~~~~ig~A~ 278 (278)
T cd06097 267 FDVGGPKLGFAP 278 (278)
T ss_pred EcCCCceeeecC
Confidence 999999999995
No 22
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=99.98 E-value=1e-32 Score=240.83 Aligned_cols=215 Identities=21% Similarity=0.397 Sum_probs=168.3
Q ss_pred ceEEeeccCCCCCCCCCCCCcceEeecCCCC-------CChHHHHHHhCCc-cCeEEEEecCC--CcEEEEECCCCC--C
Q 025328 2 LSFCSCGYNQHNPGPLSPPDTAGVLGLGRGR-------ISIVSQLREYGLI-RNVIGHCIGQN--GRGVLFLGDGKV--P 69 (254)
Q Consensus 2 ~~~fGc~~~~~~~~~~~~~~~dGIlGLg~~~-------~s~~~ql~~~~~i-~~~Fs~~l~~~--~~G~l~fGg~~~--~ 69 (254)
++.||++.+..+.. +.....+||||||++. .+++.+|.++|+| +++||++|.+. ..|.|+|||+|+ +
T Consensus 87 ~~~f~~~~~~~~~~-~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~i~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~ 165 (317)
T PF00026_consen 87 NQTFGLADSYSGDP-FSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGLISSNVFSLYLNPSDSQNGSLTFGGYDPSKY 165 (317)
T ss_dssp EEEEEEEEEEESHH-HHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTSSSSSEEEEEEESTTSSEEEEEESSEEGGGE
T ss_pred ccceeccccccccc-cccccccccccccCCcccccccCCcceecchhhccccccccceeeeecccccchheeeccccccc
Confidence 46899988853321 1235789999999743 5788999999999 89999999974 379999999984 5
Q ss_pred CCCceEEecccCCCCCCCeEEeeeEEEECCE-EecCCCCeEEEecCCccEEeChHHHHHHHHHHHHHhcCCCCccCCCCC
Q 025328 70 SSGVAWTPMLQNSADLKHYILGPAELLYSGK-SCGLKDLTLIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDK 148 (254)
Q Consensus 70 ~~~i~~~pi~~~~~~~~~y~v~l~~i~v~~~-~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~ 148 (254)
.+++.|+|+.. ..+|.+.+.+|.++++ .+......++|||||++++||++++++|++.+...... ..
T Consensus 166 ~g~~~~~~~~~----~~~w~v~~~~i~i~~~~~~~~~~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~~~--------~~ 233 (317)
T PF00026_consen 166 DGDLVWVPLVS----SGYWSVPLDSISIGGESVFSSSGQQAILDTGTSYIYLPRSIFDAIIKALGGSYSD--------GV 233 (317)
T ss_dssp ESEEEEEEBSS----TTTTEEEEEEEEETTEEEEEEEEEEEEEETTBSSEEEEHHHHHHHHHHHTTEEEC--------SE
T ss_pred cCceeccCccc----ccccccccccccccccccccccceeeecccccccccccchhhHHHHhhhcccccc--------ee
Confidence 78999999994 3799999999999998 33333468999999999999999999999988654431 11
Q ss_pred CCCcccCCCCCCcccccccCCcEEEEEccCCcceEEEecCCceEEEeCCC--ceEE-EEEcCCcCCCCCceeeccceeec
Q 025328 149 TLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVISGRK--NVCL-GILNGSEAEVGENNIIGEIFMQD 225 (254)
Q Consensus 149 ~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~i~~~~y~~~~~~~--~~C~-~~~~~~~~~~~~~~iLG~~f~~~ 225 (254)
....|.. . ..+|.|+|.|++ .+++|||++|+...... ..|+ .+...+.......+|||..|||+
T Consensus 234 ~~~~c~~--------~-~~~p~l~f~~~~----~~~~i~~~~~~~~~~~~~~~~C~~~i~~~~~~~~~~~~iLG~~fl~~ 300 (317)
T PF00026_consen 234 YSVPCNS--------T-DSLPDLTFTFGG----VTFTIPPSDYIFKIEDGNGGYCYLGIQPMDSSDDSDDWILGSPFLRN 300 (317)
T ss_dssp EEEETTG--------G-GGSEEEEEEETT----EEEEEEHHHHEEEESSTTSSEEEESEEEESSTTSSSEEEEEHHHHTT
T ss_pred EEEeccc--------c-cccceEEEeeCC----EEEEecchHhcccccccccceeEeeeecccccccCCceEecHHHhhc
Confidence 1224543 1 468999999998 99999999999987543 4796 56652212235689999999999
Q ss_pred eEEEEeCCCCEEeeecC
Q 025328 226 KMVIYDNEKQRIGWKPE 242 (254)
Q Consensus 226 ~~vvfD~~~~rIGfa~~ 242 (254)
+|++||.+++|||||++
T Consensus 301 ~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 301 YYVVFDYENNRIGFAQA 317 (317)
T ss_dssp EEEEEETTTTEEEEEEE
T ss_pred eEEEEeCCCCEEEEecC
Confidence 99999999999999985
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=99.97 E-value=7.6e-31 Score=225.30 Aligned_cols=182 Identities=23% Similarity=0.377 Sum_probs=150.4
Q ss_pred ceEEeeccCCCCCCCCCCCCcceEeecCCCC------CChHHHHHHhCCc-cCeEEEEecC----CCcEEEEECCCCC--
Q 025328 2 LSFCSCGYNQHNPGPLSPPDTAGVLGLGRGR------ISIVSQLREYGLI-RNVIGHCIGQ----NGRGVLFLGDGKV-- 68 (254)
Q Consensus 2 ~~~fGc~~~~~~~~~~~~~~~dGIlGLg~~~------~s~~~ql~~~~~i-~~~Fs~~l~~----~~~G~l~fGg~~~-- 68 (254)
++.|||+++..+.+ .....+||||||++. .+++.||.+++.| +++||+||.+ ...|.|+|||+|+
T Consensus 87 ~~~fg~~~~~~~~~--~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~ 164 (283)
T cd05471 87 NQTFGCATSESGDF--SSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLISSPVFSFYLGRDGDGGNGGELTFGGIDPSK 164 (283)
T ss_pred ceEEEEEeccCCcc--cccccceEeecCCcccccccCCCHHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEEcccCccc
Confidence 68999999987633 356899999999988 7899999999988 8999999996 3799999999985
Q ss_pred CCCCceEEecccCCCCCCCeEEeeeEEEECCE--EecCCCCeEEEecCCccEEeChHHHHHHHHHHHHHhcCCCCccCCC
Q 025328 69 PSSGVAWTPMLQNSADLKHYILGPAELLYSGK--SCGLKDLTLIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPD 146 (254)
Q Consensus 69 ~~~~i~~~pi~~~~~~~~~y~v~l~~i~v~~~--~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~ 146 (254)
..+++.|+|+.... +.+|.|.+++|.++++ ........++|||||++++||+++|++|.+++......
T Consensus 165 ~~~~~~~~p~~~~~--~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~~-------- 234 (283)
T cd05471 165 YTGDLTYTPVVSNG--PGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSSVYDAILKALGAAVSS-------- 234 (283)
T ss_pred cCCceEEEecCCCC--CCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHHHHHHHHHHhCCcccc--------
Confidence 47999999999862 4799999999999997 33344689999999999999999999999988665431
Q ss_pred CCCCCcccCCCCCCcccccccCCcEEEEEccCCcceEEEecCCceEEEeCCCceEEEEEcCCcCCCCCceeeccceeece
Q 025328 147 DKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVISGRKNVCLGILNGSEAEVGENNIIGEIFMQDK 226 (254)
Q Consensus 147 ~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~i~~~~y~~~~~~~~~C~~~~~~~~~~~~~~~iLG~~f~~~~ 226 (254)
...|+..+ |... ..+|+|+|+| .+|||+.|||++
T Consensus 235 ---~~~~~~~~---~~~~-~~~p~i~f~f---------------------------------------~~ilG~~fl~~~ 268 (283)
T cd05471 235 ---SDGGYGVD---CSPC-DTLPDITFTF---------------------------------------LWILGDVFLRNY 268 (283)
T ss_pred ---cCCcEEEe---Cccc-CcCCCEEEEE---------------------------------------EEEccHhhhhhe
Confidence 11122211 1111 4689999998 589999999999
Q ss_pred EEEEeCCCCEEeeec
Q 025328 227 MVIYDNEKQRIGWKP 241 (254)
Q Consensus 227 ~vvfD~~~~rIGfa~ 241 (254)
|++||.+++|||||+
T Consensus 269 y~vfD~~~~~igfa~ 283 (283)
T cd05471 269 YTVFDLDNNRIGFAP 283 (283)
T ss_pred EEEEeCCCCEEeecC
Confidence 999999999999985
No 24
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.96 E-value=2.3e-28 Score=194.04 Aligned_cols=151 Identities=24% Similarity=0.434 Sum_probs=115.0
Q ss_pred CeEEeeeEEEECCEEecCC---------CCeEEEecCCccEEeChHHHHHHHHHHHHHhcCCCCcc-CCCCCCCCcccCC
Q 025328 87 HYILGPAELLYSGKSCGLK---------DLTLIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKL-APDDKTLPICWRG 156 (254)
Q Consensus 87 ~y~v~l~~i~v~~~~~~~~---------~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~C~~~ 156 (254)
+|.|.|++|+||++++.++ .+.++|||||++++||+++|+++++++.+++...++++ ......++.||..
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~~ 80 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYNL 80 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEEG
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceeec
Confidence 5999999999999998764 25799999999999999999999999999998654332 2345667889987
Q ss_pred CCCCcccccccCCcEEEEEccCCcceEEEecCCceEEEeCCCceEEEEEcCCcCCCCCceeeccceeeceEEEEeCCCCE
Q 025328 157 PFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVISGRKNVCLGILNGSEAEVGENNIIGEIFMQDKMVIYDNEKQR 236 (254)
Q Consensus 157 ~~~~~~~~~~~~P~i~f~f~g~~~~~~~~i~~~~y~~~~~~~~~C~~~~~~~~~~~~~~~iLG~~f~~~~~vvfD~~~~r 236 (254)
+..........+|+|+|+|.+ +++++|+|++|++...++.+|+++..... ...+..|||..+|+++.++||++++|
T Consensus 81 ~~~~~~~~~~~~P~i~l~F~~---ga~l~l~~~~y~~~~~~~~~Cla~~~~~~-~~~~~~viG~~~~~~~~v~fDl~~~~ 156 (161)
T PF14541_consen 81 SSFGVNRDWAKFPTITLHFEG---GADLTLPPENYFVQVSPGVFCLAFVPSDA-DDDGVSVIGNFQQQNYHVVFDLENGR 156 (161)
T ss_dssp GCS-EETTEESS--EEEEETT---SEEEEE-HHHHEEEECTTEEEESEEEETS-TTSSSEEE-HHHCCTEEEEEETTTTE
T ss_pred cccccccccccCCeEEEEEeC---CcceeeeccceeeeccCCCEEEEEEccCC-CCCCcEEECHHHhcCcEEEEECCCCE
Confidence 431112234689999999998 69999999999999888889999998711 12568999999999999999999999
Q ss_pred Eeeec
Q 025328 237 IGWKP 241 (254)
Q Consensus 237 IGfa~ 241 (254)
|||+|
T Consensus 157 igF~~ 161 (161)
T PF14541_consen 157 IGFAP 161 (161)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 99986
No 25
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.15 E-value=7.9e-11 Score=93.61 Aligned_cols=58 Identities=31% Similarity=0.478 Sum_probs=47.8
Q ss_pred ceEEeeccCCCCCCCCCCCCcceEeecCCCCCChHHHHHHhCCccCeEEEEecC---CCcEEEEECC
Q 025328 2 LSFCSCGYNQHNPGPLSPPDTAGVLGLGRGRISIVSQLREYGLIRNVIGHCIGQ---NGRGVLFLGD 65 (254)
Q Consensus 2 ~~~fGc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~~Fs~~l~~---~~~G~l~fGg 65 (254)
+++|||++.+.+.+ ..++||||||++++||++||+.+ ..++||+||.+ +..|.|+||+
T Consensus 104 ~~~FGC~~~~~g~~----~~~~GilGLg~~~~Sl~sQl~~~--~~~~FSyCL~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 104 DFIFGCATSNSGLF----YGADGILGLGRGPLSLPSQLASS--SGNKFSYCLPSSSPSSSGFLSFGD 164 (164)
T ss_dssp EEEEEEE-GGGTSS----TTEEEEEE-SSSTTSHHHHHHHH----SEEEEEB-S-SSSSEEEEEECS
T ss_pred eEEEEeeeccccCC----cCCCcccccCCCcccHHHHHHHh--cCCeEEEECCCCCCCCCEEEEeCc
Confidence 58999999998776 37999999999999999999887 67899999996 5799999996
No 26
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=93.07 E-value=0.39 Score=36.03 Aligned_cols=26 Identities=12% Similarity=0.187 Sum_probs=22.8
Q ss_pred CceeeccceeeceEEEEeCCCCEEee
Q 025328 214 ENNIIGEIFMQDKMVIYDNEKQRIGW 239 (254)
Q Consensus 214 ~~~iLG~~f~~~~~vvfD~~~~rIGf 239 (254)
...|||..||+.+-.+.|+.+.+|-+
T Consensus 99 ~d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 99 VDFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred cCEEecHHHHHhCCeEEECCCCEEEC
Confidence 35699999999999999999998753
No 27
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=91.36 E-value=0.41 Score=35.83 Aligned_cols=36 Identities=17% Similarity=0.258 Sum_probs=28.2
Q ss_pred CCCeEEeeeEEEECCEEecCCCCeEEEecCCccEEeChHHHHHH
Q 025328 85 LKHYILGPAELLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEI 128 (254)
Q Consensus 85 ~~~y~v~l~~i~v~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l 128 (254)
.++|.++ +.|||+.+ ..+||||.+.+.+++++.+++
T Consensus 9 ~g~~~v~---~~InG~~~-----~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 9 DGHFYAT---GRVNGRNV-----RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCeEEEE---EEECCEEE-----EEEEECCCCcEEcCHHHHHHc
Confidence 3677655 45888744 789999999999999987665
No 28
>PF13650 Asp_protease_2: Aspartyl protease
Probab=90.15 E-value=0.61 Score=32.09 Aligned_cols=29 Identities=21% Similarity=0.452 Sum_probs=24.0
Q ss_pred EEECCEEecCCCCeEEEecCCccEEeChHHHHHH
Q 025328 95 LLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEI 128 (254)
Q Consensus 95 i~v~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l 128 (254)
++|+|+.+ .+++|||++.+.+++++++++
T Consensus 3 v~vng~~~-----~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPV-----RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEE-----EEEEcCCCCcEEECHHHHHHc
Confidence 56777643 789999999999999988765
No 29
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=90.06 E-value=0.44 Score=36.42 Aligned_cols=27 Identities=11% Similarity=0.302 Sum_probs=25.3
Q ss_pred ceeeccceeeceEEEEeCCCCEEeeec
Q 025328 215 NNIIGEIFMQDKMVIYDNEKQRIGWKP 241 (254)
Q Consensus 215 ~~iLG~~f~~~~~vvfD~~~~rIGfa~ 241 (254)
..|||..+|+.+..+-|..+++|-|..
T Consensus 105 DvILGm~WL~~~~~~IDw~~k~v~f~~ 131 (135)
T PF08284_consen 105 DVILGMDWLKKHNPVIDWATKTVTFNS 131 (135)
T ss_pred eeEeccchHHhCCCEEEccCCEEEEeC
Confidence 579999999999999999999999975
No 30
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=89.92 E-value=1.7 Score=31.65 Aligned_cols=24 Identities=13% Similarity=0.385 Sum_probs=20.7
Q ss_pred CceeeccceeeceEEEEeCCCCEE
Q 025328 214 ENNIIGEIFMQDKMVIYDNEKQRI 237 (254)
Q Consensus 214 ~~~iLG~~f~~~~~vvfD~~~~rI 237 (254)
+..+||..||+.+-.+-|+.++++
T Consensus 84 ~~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 84 DEPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred CccEecHHHHhhCCEEEehhhCcC
Confidence 367999999999999999987753
No 31
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=87.96 E-value=1.1 Score=31.31 Aligned_cols=30 Identities=20% Similarity=0.527 Sum_probs=25.2
Q ss_pred EEEECCEEecCCCCeEEEecCCccEEeChHHHHHH
Q 025328 94 ELLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEI 128 (254)
Q Consensus 94 ~i~v~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l 128 (254)
.+.|+|+.+ ...+|||++.+.++.+.+..+
T Consensus 4 ~~~Ing~~i-----~~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPL-----KFQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEE-----EEEEcCCcceEEeCHHHHHHh
Confidence 466888866 679999999999999988765
No 32
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=86.93 E-value=1.5 Score=29.45 Aligned_cols=29 Identities=14% Similarity=0.374 Sum_probs=24.6
Q ss_pred EEECCEEecCCCCeEEEecCCccEEeChHHHHHH
Q 025328 95 LLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEI 128 (254)
Q Consensus 95 i~v~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l 128 (254)
+.++++.+ .+++|||.+-.+++.+..+.+
T Consensus 13 ~~I~g~~~-----~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQV-----KALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEE-----EEEEeCCCcceecCHHHHHHh
Confidence 56888655 589999999999999988776
No 33
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=84.25 E-value=2.5 Score=29.28 Aligned_cols=30 Identities=17% Similarity=0.422 Sum_probs=23.5
Q ss_pred EEEECCEEecCCCCeEEEecCCccEEeChHHHHHH
Q 025328 94 ELLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEI 128 (254)
Q Consensus 94 ~i~v~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l 128 (254)
.+.+|++.+ .+++|||++.+.++.+..+.+
T Consensus 6 ~v~i~~~~~-----~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 6 PVTINGQPV-----RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEECCEEE-----EEEEECCCCcEEcCHHHHHHc
Confidence 355776544 789999999999999876654
No 34
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=80.79 E-value=3.2 Score=28.73 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=23.8
Q ss_pred EEECCEEecCCCCeEEEecCCccEEeChHHHHHH
Q 025328 95 LLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEI 128 (254)
Q Consensus 95 i~v~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l 128 (254)
+.+||+.+ ..++|||.+.+.++++..+.+
T Consensus 3 v~InG~~~-----~fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPI-----VFLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEE-----EEEEECCCCeEEECHHHhhhc
Confidence 56777755 679999999999999988764
No 35
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=80.15 E-value=2.6 Score=29.80 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=21.7
Q ss_pred eEEEECCEEecCCCCeEEEecCCccEEeChHH
Q 025328 93 AELLYSGKSCGLKDLTLIFDSGASYAYFTSRV 124 (254)
Q Consensus 93 ~~i~v~~~~~~~~~~~~iiDSGTt~~~lp~~~ 124 (254)
..|.++++.+ .++||||++.+.++.+.
T Consensus 8 i~v~i~g~~i-----~~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 8 ITVKINGKKI-----KALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEEETTEEE-----EEEEETTBSSEEESSGG
T ss_pred EEEeECCEEE-----EEEEecCCCcceecccc
Confidence 4467788755 78999999999999863
No 36
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=72.56 E-value=10 Score=31.05 Aligned_cols=36 Identities=17% Similarity=0.267 Sum_probs=29.1
Q ss_pred CCCeEEeeeEEEECCEEecCCCCeEEEecCCccEEeChHHHHHH
Q 025328 85 LKHYILGPAELLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEI 128 (254)
Q Consensus 85 ~~~y~v~l~~i~v~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l 128 (254)
++||.++. .|||+.+ ..+||||.|.+.++++..+.+
T Consensus 103 ~GHF~a~~---~VNGk~v-----~fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 103 DGHFEANG---RVNGKKV-----DFLVDTGATSVALNEEDARRL 138 (215)
T ss_pred CCcEEEEE---EECCEEE-----EEEEecCcceeecCHHHHHHh
Confidence 57887654 5999877 569999999999999887665
No 37
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=68.85 E-value=8.7 Score=28.88 Aligned_cols=30 Identities=13% Similarity=0.202 Sum_probs=23.3
Q ss_pred EEEECCEEecCCCCeEEEecCCccEEeChHHHHHH
Q 025328 94 ELLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEI 128 (254)
Q Consensus 94 ~i~v~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l 128 (254)
.+++||+.+ .|+||||+..+.++.+..+++
T Consensus 28 ~~~ing~~v-----kA~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 28 NCKINGVPV-----KAFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEETTEEE-----EEEEETT-SS-EEEHHHHHHT
T ss_pred EEEECCEEE-----EEEEeCCCCccccCHHHHHHc
Confidence 466888765 799999999999999988774
No 38
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=66.10 E-value=6.8 Score=27.69 Aligned_cols=30 Identities=20% Similarity=0.424 Sum_probs=22.9
Q ss_pred EEECCEEecCCCCeEEEecCCccEEeChHHHHHH
Q 025328 95 LLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEI 128 (254)
Q Consensus 95 i~v~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l 128 (254)
+.++++ ..-.+.+|||.+...+|.+.|..+
T Consensus 3 ~~i~g~----~~v~~~vDtGA~vnllp~~~~~~l 32 (93)
T cd05481 3 MKINGK----QSVKFQLDTGATCNVLPLRWLKSL 32 (93)
T ss_pred eEeCCc----eeEEEEEecCCEEEeccHHHHhhh
Confidence 455663 134789999999999999887665
No 39
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=64.48 E-value=5.8 Score=29.67 Aligned_cols=21 Identities=19% Similarity=0.468 Sum_probs=18.4
Q ss_pred eEEEecCCc-cEEeChHHHHHH
Q 025328 108 TLIFDSGAS-YAYFTSRVYQEI 128 (254)
Q Consensus 108 ~~iiDSGTt-~~~lp~~~~~~l 128 (254)
..+||||-+ ++.+|+++++++
T Consensus 28 ~~LiDTGFtg~lvlp~~vaek~ 49 (125)
T COG5550 28 DELIDTGFTGYLVLPPQVAEKL 49 (125)
T ss_pred eeEEecCCceeEEeCHHHHHhc
Confidence 348999999 999999998876
No 40
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=50.48 E-value=13 Score=26.49 Aligned_cols=19 Identities=21% Similarity=0.426 Sum_probs=16.2
Q ss_pred CCeEEEecCCccEEeChHH
Q 025328 106 DLTLIFDSGASYAYFTSRV 124 (254)
Q Consensus 106 ~~~~iiDSGTt~~~lp~~~ 124 (254)
...+++|||++.+.++..-
T Consensus 11 ~~~~~~DTGSs~~Wv~~~~ 29 (109)
T cd05470 11 TFNVLLDTGSSNLWVPSVD 29 (109)
T ss_pred eEEEEEeCCCCCEEEeCCC
Confidence 3588999999999999764
No 41
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=47.71 E-value=55 Score=25.92 Aligned_cols=23 Identities=22% Similarity=0.613 Sum_probs=19.4
Q ss_pred CeEEEecCCccEEeChHHHHHHH
Q 025328 107 LTLIFDSGASYAYFTSRVYQEIV 129 (254)
Q Consensus 107 ~~~iiDSGTt~~~lp~~~~~~l~ 129 (254)
-.+++|||+...+..++..+.|.
T Consensus 46 i~vLfDSGSPTSfIr~di~~kL~ 68 (177)
T PF12384_consen 46 IKVLFDSGSPTSFIRSDIVEKLE 68 (177)
T ss_pred EEEEEeCCCccceeehhhHHhhC
Confidence 48899999999999998776653
No 42
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=33.04 E-value=42 Score=29.26 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=21.5
Q ss_pred eeEEEECCEEecCCCCeEEEecCCccEEeChHH
Q 025328 92 PAELLYSGKSCGLKDLTLIFDSGASYAYFTSRV 124 (254)
Q Consensus 92 l~~i~v~~~~~~~~~~~~iiDSGTt~~~lp~~~ 124 (254)
+..|.||.- .....+++|||++.+.+|...
T Consensus 5 ~~~i~vGtP---~Q~~~v~~DTGS~~~wv~~~~ 34 (326)
T cd06096 5 FIDIFIGNP---PQKQSLILDTGSSSLSFPCSQ 34 (326)
T ss_pred EEEEEecCC---CeEEEEEEeCCCCceEEecCC
Confidence 345667752 123589999999999998753
No 43
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=32.02 E-value=33 Score=29.10 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=20.2
Q ss_pred EEEECCEEecCCCCeEEEecCCccEEeChHH
Q 025328 94 ELLYSGKSCGLKDLTLIFDSGASYAYFTSRV 124 (254)
Q Consensus 94 ~i~v~~~~~~~~~~~~iiDSGTt~~~lp~~~ 124 (254)
.|+||.-. ....+++|||++.+.+|..-
T Consensus 4 ~i~vGtP~---Q~~~v~~DTGS~~~wv~~~~ 31 (278)
T cd06097 4 PVKIGTPP---QTLNLDLDTGSSDLWVFSSE 31 (278)
T ss_pred eEEECCCC---cEEEEEEeCCCCceeEeeCC
Confidence 45677521 23478999999999999763
No 44
>PF05585 DUF1758: Putative peptidase (DUF1758); InterPro: IPR008737 This is a family of nematode proteins of unknown function []. However, it seems likely that these proteins act as aspartic peptidases.
Probab=30.89 E-value=27 Score=27.25 Aligned_cols=23 Identities=17% Similarity=0.392 Sum_probs=19.7
Q ss_pred CeEEEecCCccEEeChHHHHHHH
Q 025328 107 LTLIFDSGASYAYFTSRVYQEIV 129 (254)
Q Consensus 107 ~~~iiDSGTt~~~lp~~~~~~l~ 129 (254)
..+++|||+...+.-+++.+.|.
T Consensus 13 ~~~LlDsGSq~SfIt~~la~~L~ 35 (164)
T PF05585_consen 13 ARALLDSGSQRSFITESLANKLN 35 (164)
T ss_pred EEEEEecCCchhHHhHHHHHHhC
Confidence 58899999999999988877763
No 45
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=30.30 E-value=40 Score=21.46 Aligned_cols=20 Identities=25% Similarity=0.469 Sum_probs=17.4
Q ss_pred eEEEecCCccEEeChHHHHH
Q 025328 108 TLIFDSGASYAYFTSRVYQE 127 (254)
Q Consensus 108 ~~iiDSGTt~~~lp~~~~~~ 127 (254)
.+++|||++...+..+.++.
T Consensus 11 ~~liDtgs~~~~~~~~~~~~ 30 (92)
T cd00303 11 RALVDSGASVNFISESLAKK 30 (92)
T ss_pred EEEEcCCCcccccCHHHHHH
Confidence 78999999999999987654
No 46
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=28.67 E-value=48 Score=27.88 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=18.6
Q ss_pred EEEECCEEecCCCCeEEEecCCccEEeCh
Q 025328 94 ELLYSGKSCGLKDLTLIFDSGASYAYFTS 122 (254)
Q Consensus 94 ~i~v~~~~~~~~~~~~iiDSGTt~~~lp~ 122 (254)
.|.||.- .....+++|||++.+.+|.
T Consensus 5 ~i~iGtP---~q~~~v~~DTGSs~~wv~~ 30 (265)
T cd05476 5 TLSIGTP---PQPFSLIVDTGSDLTWTQC 30 (265)
T ss_pred EEecCCC---CcceEEEecCCCCCEEEcC
Confidence 3456642 1245899999999999986
No 47
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=27.90 E-value=52 Score=28.48 Aligned_cols=28 Identities=21% Similarity=0.444 Sum_probs=20.4
Q ss_pred eEEEECCEEecCCCCeEEEecCCccEEeChH
Q 025328 93 AELLYSGKSCGLKDLTLIFDSGASYAYFTSR 123 (254)
Q Consensus 93 ~~i~v~~~~~~~~~~~~iiDSGTt~~~lp~~ 123 (254)
..|.||.-. ....+++|||++.+.+|..
T Consensus 6 ~~i~iGtP~---q~~~v~~DTGS~~~wv~~~ 33 (318)
T cd05477 6 GEISIGTPP---QNFLVLFDTGSSNLWVPSV 33 (318)
T ss_pred EEEEECCCC---cEEEEEEeCCCccEEEccC
Confidence 446677522 2348999999999999964
No 48
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=26.70 E-value=52 Score=27.92 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=18.7
Q ss_pred eEEEECCEEecCCCCeEEEecCCccEEeC
Q 025328 93 AELLYSGKSCGLKDLTLIFDSGASYAYFT 121 (254)
Q Consensus 93 ~~i~v~~~~~~~~~~~~iiDSGTt~~~lp 121 (254)
..|.||.-.- ...+++|||++.+.+|
T Consensus 5 ~~i~iGtp~q---~~~v~~DTgS~~~wv~ 30 (295)
T cd05474 5 AELSVGTPPQ---KVTVLLDTGSSDLWVP 30 (295)
T ss_pred EEEEECCCCc---EEEEEEeCCCCcceee
Confidence 3455776222 3478999999999999
No 49
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=26.40 E-value=58 Score=27.17 Aligned_cols=29 Identities=24% Similarity=0.464 Sum_probs=21.0
Q ss_pred EEEECCEEecCCCCeEEEecCCccEEeChHHH
Q 025328 94 ELLYSGKSCGLKDLTLIFDSGASYAYFTSRVY 125 (254)
Q Consensus 94 ~i~v~~~~~~~~~~~~iiDSGTt~~~lp~~~~ 125 (254)
.|.||... ....+++|||++.+.+|....
T Consensus 4 ~i~iGtp~---q~~~l~~DTGS~~~wv~~~~c 32 (283)
T cd05471 4 EITIGTPP---QKFSVIFDTGSSLLWVPSSNC 32 (283)
T ss_pred EEEECCCC---cEEEEEEeCCCCCEEEecCCC
Confidence 35566532 245899999999999988643
No 50
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=26.33 E-value=3.8e+02 Score=24.11 Aligned_cols=40 Identities=10% Similarity=0.251 Sum_probs=30.9
Q ss_pred eE-EEEEcCCcCCCCCceeeccceeeceEEEEeCCCCEEeeecCC
Q 025328 200 VC-LGILNGSEAEVGENNIIGEIFMQDKMVIYDNEKQRIGWKPED 243 (254)
Q Consensus 200 ~C-~~~~~~~~~~~~~~~iLG~~f~~~~~vvfD~~~~rIGfa~~~ 243 (254)
.| +.+....+ ....||...||.+-..-|++++++-++...
T Consensus 307 ~c~ftV~d~~~----~d~llGLd~Lrr~~ccIdL~~~~L~ig~~~ 347 (380)
T KOG0012|consen 307 PCSFTVLDRRD----MDLLLGLDMLRRHQCCIDLKTNVLRIGNTE 347 (380)
T ss_pred ccceEEecCCC----cchhhhHHHHHhccceeecccCeEEecCCC
Confidence 46 46666542 346899999999999999999988877543
No 51
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=25.68 E-value=59 Score=28.14 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=20.2
Q ss_pred EEEECCEEecCCCCeEEEecCCccEEeChH
Q 025328 94 ELLYSGKSCGLKDLTLIFDSGASYAYFTSR 123 (254)
Q Consensus 94 ~i~v~~~~~~~~~~~~iiDSGTt~~~lp~~ 123 (254)
.|.||...- ...+++|||++.+.+|..
T Consensus 14 ~i~vGtp~q---~~~v~~DTGS~~~wv~~~ 40 (317)
T cd05478 14 TISIGTPPQ---DFTVIFDTGSSNLWVPSV 40 (317)
T ss_pred EEEeCCCCc---EEEEEEeCCCccEEEecC
Confidence 456886322 348999999999999964
No 52
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=24.82 E-value=63 Score=28.07 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=19.9
Q ss_pred EEEECCEEecCCCCeEEEecCCccEEeChH
Q 025328 94 ELLYSGKSCGLKDLTLIFDSGASYAYFTSR 123 (254)
Q Consensus 94 ~i~v~~~~~~~~~~~~iiDSGTt~~~lp~~ 123 (254)
.|.||.-. ....+++|||++.+.+|..
T Consensus 10 ~i~iGtP~---q~~~v~~DTGSs~~Wv~~~ 36 (325)
T cd05490 10 EIGIGTPP---QTFTVVFDTGSSNLWVPSV 36 (325)
T ss_pred EEEECCCC---cEEEEEEeCCCccEEEEcC
Confidence 45577521 2358999999999999864
No 53
>PRK09784 hypothetical protein; Provisional
Probab=24.73 E-value=1.2e+02 Score=25.51 Aligned_cols=39 Identities=10% Similarity=0.297 Sum_probs=29.3
Q ss_pred eeeEEEECCEEecCC---CCeEEEecCCc-cEEeChHHHHHHH
Q 025328 91 GPAELLYSGKSCGLK---DLTLIFDSGAS-YAYFTSRVYQEIV 129 (254)
Q Consensus 91 ~l~~i~v~~~~~~~~---~~~~iiDSGTt-~~~lp~~~~~~l~ 129 (254)
++.+|++|+.+++.. +.+-+|.||.. .+|||+++++.-.
T Consensus 356 nvasislgnesfstd~dleygylintGnhYdvYLpPELfaqAy 398 (417)
T PRK09784 356 NVASISLGNESFSTDEDLEYGYLINTGNHYDVYLPPELFAQAY 398 (417)
T ss_pred ceeeEEccCcccccccccceeeEEecCceeEEecCHHHHHHHH
Confidence 567888898888654 35778888876 5899999876544
No 54
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=24.39 E-value=64 Score=27.99 Aligned_cols=32 Identities=28% Similarity=0.466 Sum_probs=22.4
Q ss_pred CCeEEeeeEEEECCEEecCCCCeEEEecCCccEEeChH
Q 025328 86 KHYILGPAELLYSGKSCGLKDLTLIFDSGASYAYFTSR 123 (254)
Q Consensus 86 ~~y~v~l~~i~v~~~~~~~~~~~~iiDSGTt~~~lp~~ 123 (254)
..|.+ .|+||... ....+++|||++.+.+|..
T Consensus 9 ~~Y~~---~i~iGtP~---Q~~~v~~DTGSs~lWv~~~ 40 (317)
T cd06098 9 AQYFG---EIGIGTPP---QKFTVIFDTGSSNLWVPSS 40 (317)
T ss_pred CEEEE---EEEECCCC---eEEEEEECCCccceEEecC
Confidence 34554 45577521 2348999999999999974
No 55
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=23.34 E-value=66 Score=27.82 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=19.4
Q ss_pred EEEECCEEecCCCCeEEEecCCccEEeChH
Q 025328 94 ELLYSGKSCGLKDLTLIFDSGASYAYFTSR 123 (254)
Q Consensus 94 ~i~v~~~~~~~~~~~~iiDSGTt~~~lp~~ 123 (254)
.|+||.- .....+++|||++.+.+|..
T Consensus 4 ~i~iGtP---~Q~~~v~~DTGSs~~Wv~s~ 30 (316)
T cd05486 4 QISIGTP---PQNFTVIFDTGSSNLWVPSI 30 (316)
T ss_pred EEEECCC---CcEEEEEEcCCCccEEEecC
Confidence 4556642 12358999999999999964
No 56
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=23.04 E-value=68 Score=27.84 Aligned_cols=28 Identities=18% Similarity=0.404 Sum_probs=20.6
Q ss_pred eEEEECCEEecCCCCeEEEecCCccEEeChH
Q 025328 93 AELLYSGKSCGLKDLTLIFDSGASYAYFTSR 123 (254)
Q Consensus 93 ~~i~v~~~~~~~~~~~~iiDSGTt~~~lp~~ 123 (254)
..|.+|... ....+++|||++.+.+|..
T Consensus 13 ~~i~iGtp~---q~~~v~~DTGSs~~wv~~~ 40 (320)
T cd05488 13 TDITLGTPP---QKFKVILDTGSSNLWVPSV 40 (320)
T ss_pred EEEEECCCC---cEEEEEEecCCcceEEEcC
Confidence 346688632 2357999999999999964
No 57
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=22.76 E-value=73 Score=22.44 Aligned_cols=19 Identities=21% Similarity=0.457 Sum_probs=16.4
Q ss_pred CCeEEEecCCccEEeChHH
Q 025328 106 DLTLIFDSGASYAYFTSRV 124 (254)
Q Consensus 106 ~~~~iiDSGTt~~~lp~~~ 124 (254)
+...+||||.....+|...
T Consensus 9 ~~~fLVDTGA~vSviP~~~ 27 (89)
T cd06094 9 GLRFLVDTGAAVSVLPASS 27 (89)
T ss_pred CcEEEEeCCCceEeecccc
Confidence 4588999999999999864
No 58
>PLN03146 aspartyl protease family protein; Provisional
Probab=22.18 E-value=65 Score=29.56 Aligned_cols=31 Identities=13% Similarity=0.267 Sum_probs=21.5
Q ss_pred CCeEEeeeEEEECCEEecCCCCeEEEecCCccEEeCh
Q 025328 86 KHYILGPAELLYSGKSCGLKDLTLIFDSGASYAYFTS 122 (254)
Q Consensus 86 ~~y~v~l~~i~v~~~~~~~~~~~~iiDSGTt~~~lp~ 122 (254)
..|.++ |.||.- .....+++|||+.++.+|-
T Consensus 83 ~~Y~v~---i~iGTP---pq~~~vi~DTGS~l~Wv~C 113 (431)
T PLN03146 83 GEYLMN---ISIGTP---PVPILAIADTGSDLIWTQC 113 (431)
T ss_pred ccEEEE---EEcCCC---CceEEEEECCCCCcceEcC
Confidence 455554 447752 2245899999999999974
No 59
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=21.47 E-value=81 Score=27.96 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=19.7
Q ss_pred EEEECCEEecCCCCeEEEecCCccEEeChH
Q 025328 94 ELLYSGKSCGLKDLTLIFDSGASYAYFTSR 123 (254)
Q Consensus 94 ~i~v~~~~~~~~~~~~iiDSGTt~~~lp~~ 123 (254)
.|.||.-. ....+++|||++.+.+|..
T Consensus 7 ~i~iGtP~---Q~~~v~~DTGSs~lWv~~~ 33 (364)
T cd05473 7 EMLIGTPP---QKLNILVDTGSSNFAVAAA 33 (364)
T ss_pred EEEecCCC---ceEEEEEecCCcceEEEcC
Confidence 35576522 2358999999999999875
No 60
>PTZ00147 plasmepsin-1; Provisional
Probab=21.16 E-value=84 Score=29.13 Aligned_cols=28 Identities=21% Similarity=0.352 Sum_probs=19.9
Q ss_pred EEEECCEEecCCCCeEEEecCCccEEeChHH
Q 025328 94 ELLYSGKSCGLKDLTLIFDSGASYAYFTSRV 124 (254)
Q Consensus 94 ~i~v~~~~~~~~~~~~iiDSGTt~~~lp~~~ 124 (254)
.|+||.- .....+++|||++.+.+|...
T Consensus 143 ~I~IGTP---~Q~f~Vi~DTGSsdlWVps~~ 170 (453)
T PTZ00147 143 EAKLGDN---GQKFNFIFDTGSANLWVPSIK 170 (453)
T ss_pred EEEECCC---CeEEEEEEeCCCCcEEEeecC
Confidence 3556642 123589999999999999753
No 61
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=20.58 E-value=86 Score=27.28 Aligned_cols=27 Identities=22% Similarity=0.408 Sum_probs=20.1
Q ss_pred EEEECCEEecCCCCeEEEecCCccEEeChH
Q 025328 94 ELLYSGKSCGLKDLTLIFDSGASYAYFTSR 123 (254)
Q Consensus 94 ~i~v~~~~~~~~~~~~iiDSGTt~~~lp~~ 123 (254)
.|+||.- .....+++|||++.+.+|..
T Consensus 12 ~i~iGtP---~q~~~v~~DTGSs~~Wv~~~ 38 (326)
T cd05487 12 EIGIGTP---PQTFKVVFDTGSSNLWVPSS 38 (326)
T ss_pred EEEECCC---CcEEEEEEeCCccceEEccC
Confidence 4567752 22348999999999999974
Done!