BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025329
(254 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VD3|A Chain A, The Structure Of Histidine Inhibited Hisg From
Methanobacterium Thermoautotrophicum
pdb|2VD3|B Chain B, The Structure Of Histidine Inhibited Hisg From
Methanobacterium Thermoautotrophicum
Length = 289
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 17/172 (9%)
Query: 83 EIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLL 142
+IR+ +PSKGR++ + LL++ + +K R+ ++ Q +EV F R DI +
Sbjct: 4 KIRIAVPSKGRISEPAIRLLENAGVGLKDTVNRKLFSK-TQHPQIEVMFSRAADIPEFVA 62
Query: 143 SGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQM 202
G DLGI G D + E G D+ I+ D L YG L LA P+ +++R +
Sbjct: 63 DGAADLGITGYDLIVERGS---DVEILED-LKYGRASLVLAAPED------STIRGPEDI 112
Query: 203 PQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAVRITHLL 254
P+ +AT F + +++++G+ V G+ E AP + + L+
Sbjct: 113 PRGAV-----IATEFPGITENYLREHGIDAEVVELT-GSTEIAPFIGVADLI 158
>pdb|1H3D|A Chain A, Structure Of The E.Coli Atp-Phosphoribosyltransferase
pdb|1Q1K|A Chain A, Structure Of Atp-phosphoribosyltransferase From E. Coli
Complexed With Pr-atp
Length = 299
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 84/176 (47%), Gaps = 24/176 (13%)
Query: 78 ISERDEIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDI 137
+++ +R+ + GR++ D+ +LL C + + ++ ++ +A + +++ R DI
Sbjct: 1 MTDNTRLRIAMQKSGRLSDDSRELLARCGIKI-NLHTQRLIAMAENMP-IDILRVRDDDI 58
Query: 138 VRKLLSGDLDLGIVGLDTVSE-----FGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFEN 192
++ G +DLGI+G + + E QG + LD+G CRLSLA P ++
Sbjct: 59 PGLVMDGVVDLGIIGENVLEEELLNRRAQGEDPRYFTLRRLDFGGCRLSLATPVDEAWDG 118
Query: 193 INSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTA--DGALEAAP 246
SL R+AT + +L +++ G + F + +G++E AP
Sbjct: 119 PLSL------------NGKRIATSYPHLLKRYLDQKG---ISFKSCLLNGSVEVAP 159
>pdb|1NH7|A Chain A, Atp Phosphoribosyltransferase (Atp-Prtase) From
Mycobacterium Tuberculosis
pdb|1NH8|A Chain A, Atp Phosphoribosyltransferase (Atp-Prtase) From
Mycobacterium Tuberculosis In Complex With Amp And
Histidine
Length = 304
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 73/163 (44%), Gaps = 26/163 (15%)
Query: 84 IRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLS 143
+R+ +P+KG ++ ++L + ++ + + I ++N+E +F RPKDI + S
Sbjct: 22 LRVAVPNKGALSEPATEIL--AEAGYRRRTDSKDLTVIDPVNNVEFFFLRPKDIAIYVGS 79
Query: 144 GDLDLGIVGLDTVSEFG-QGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQM 202
G+LD GI G D V + G Q E L AL +G A P
Sbjct: 80 GELDFGITGRDLVCDSGAQVRERL-----ALGFGSSSFRYAAPA---------------G 119
Query: 203 PQWTAEK--PLRVATGFTYLGPKFMKDNGLKHVVFSTADGALE 243
WT +R+AT + L K + G++ V DGA+E
Sbjct: 120 RNWTTADLAGMRIATAYPNLVRKDLATKGIEATVIRL-DGAVE 161
>pdb|1Z7M|E Chain E, Atp Phosphoribosyl Transferase (hiszg Atp-prtase) From
Lactococcus Lactis
pdb|1Z7M|F Chain F, Atp Phosphoribosyl Transferase (hiszg Atp-prtase) From
Lactococcus Lactis
pdb|1Z7M|G Chain G, Atp Phosphoribosyl Transferase (hiszg Atp-prtase) From
Lactococcus Lactis
pdb|1Z7M|H Chain H, Atp Phosphoribosyl Transferase (hiszg Atp-prtase) From
Lactococcus Lactis
pdb|1Z7N|E Chain E, Atp Phosphoribosyl Transferase (Hiszg Atp-Prtase) From
Lactococcus Lactis With Bound Prpp Substrate
pdb|1Z7N|F Chain F, Atp Phosphoribosyl Transferase (Hiszg Atp-Prtase) From
Lactococcus Lactis With Bound Prpp Substrate
pdb|1Z7N|G Chain G, Atp Phosphoribosyl Transferase (Hiszg Atp-Prtase) From
Lactococcus Lactis With Bound Prpp Substrate
pdb|1Z7N|H Chain H, Atp Phosphoribosyl Transferase (Hiszg Atp-Prtase) From
Lactococcus Lactis With Bound Prpp Substrate
Length = 208
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 9/110 (8%)
Query: 90 SKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLG 149
+KGR+ LL++ V+ + QI +L++ F +P D++ L G +D+G
Sbjct: 7 TKGRIQKQVTKLLENADYDVEPILNLGRELQIKTKDDLQIIFGKPNDVITFLEHGIVDIG 66
Query: 150 IVGLDTVSE--FGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLR 197
VG DT+ E F E L L G C +LA Y F N N R
Sbjct: 67 FVGKDTLDENDFDDYYELL-----YLKIGQCIFALA--SYPDFSNKNFQR 109
>pdb|2VD2|A Chain A, The Crystal Structure Of Hisg From B. Subtilis
Length = 214
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 73/167 (43%), Gaps = 29/167 (17%)
Query: 86 LGLPSKGRMAADTLDLLKDC--QLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLS 143
+ +P KGR+ + LL+ +L + + R+ + +P+ NL +P D+ +
Sbjct: 8 MAMP-KGRIFEEAAGLLRQAGYRLPEEFEDSRKLIIDVPE-ENLRFILAKPMDVTTYVEH 65
Query: 144 GDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMP 203
G D+GI G D + E + V++ LD + LA+ A +P
Sbjct: 66 GVADVGIAGKDVMLEEERD------VYEVLDLNISKCHLAV---------------AGLP 104
Query: 204 Q--WTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAV 248
W+ P R+AT + + + ++ G + V +G++E AP +
Sbjct: 105 NTDWSGVAP-RIATKYPNVASSYFREQG-EQVEIIKLNGSIELAPLI 149
>pdb|2JD4|A Chain A, Mouse Laminin Alpha1 Chain, Domains Lg4-5
pdb|2JD4|B Chain B, Mouse Laminin Alpha1 Chain, Domains Lg4-5
Length = 383
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 15/73 (20%)
Query: 34 FHISVASGPTTATNKPAAAVTCCVSSSQQFESHVS------VVNGNIDNRISERDEIRLG 87
FH++ +G TAT +P AA C ++H S V+GN +R
Sbjct: 259 FHVNNGAGRITATYQPRAARALCDGKWHTLQAHKSKHRIVLTVDGN---------SVRAE 309
Query: 88 LPSKGRMAADTLD 100
P +ADT D
Sbjct: 310 SPHTHSTSADTND 322
>pdb|4FLC|A Chain A, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|B Chain B, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|C Chain C, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|D Chain D, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
Length = 487
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 15/74 (20%)
Query: 149 GIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAE 208
GI+ L S + N DLII+ +ALD L +PK R ++++ + E
Sbjct: 107 GIIHLGATSCYVGDNTDLIILRNALD-------LLLPKLA--------RVISRLADFAKE 151
Query: 209 KPLRVATGFTYLGP 222
+ GFT+ P
Sbjct: 152 RASLPTLGFTHFQP 165
>pdb|4FFX|A Chain A, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|B Chain B, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|C Chain C, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|D Chain D, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
Length = 487
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 15/74 (20%)
Query: 149 GIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAE 208
GI+ L S + N DLII+ +ALD L +PK R ++++ + E
Sbjct: 107 GIIHLGATSCYVGDNTDLIILRNALD-------LLLPKLA--------RVISRLADFAKE 151
Query: 209 KPLRVATGFTYLGP 222
+ GFT+ P
Sbjct: 152 RASLPTLGFTHFQP 165
>pdb|2J91|A Chain A, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|B Chain B, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|C Chain C, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|D Chain D, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
Length = 503
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 15/74 (20%)
Query: 149 GIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAE 208
GI+ L S + N DLII+ +ALD L +PK R ++++ + E
Sbjct: 126 GIIHLGATSCYVGDNTDLIILRNALD-------LLLPKLA--------RVISRLADFAKE 170
Query: 209 KPLRVATGFTYLGP 222
+ GFT+ P
Sbjct: 171 RASLPTLGFTHFQP 184
>pdb|2VD6|A Chain A, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|B Chain B, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|C Chain C, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|D Chain D, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate
Length = 503
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 15/74 (20%)
Query: 149 GIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAE 208
GI+ L S + N DLII+ +ALD L +PK R ++++ + E
Sbjct: 126 GIIHLGATSCYVGDNTDLIILRNALD-------LLLPKLA--------RVISRLADFAKE 170
Query: 209 KPLRVATGFTYLGP 222
+ GFT+ P
Sbjct: 171 RASLPTLGFTHFQP 184
>pdb|4FNV|A Chain A, Crystal Structure Of Heparinase Iii
Length = 702
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 133 RPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPK 186
+P D+V + ++L GL+ V EF + E + L+Y R ++ P
Sbjct: 40 KPNDVVDPQVFEAINLNYPGLEKVKEFYEAGEHYYAANALLEYYRTRTNVTNPN 93
>pdb|2NXO|A Chain A, Crystal Structure Of Protein Sco4506 From Streptomyces
Coelicolor, Pfam Duf178
pdb|2NXO|B Chain B, Crystal Structure Of Protein Sco4506 From Streptomyces
Coelicolor, Pfam Duf178
pdb|2NXO|C Chain C, Crystal Structure Of Protein Sco4506 From Streptomyces
Coelicolor, Pfam Duf178
pdb|2NXO|D Chain D, Crystal Structure Of Protein Sco4506 From Streptomyces
Coelicolor, Pfam Duf178
Length = 291
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 118 VAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHD 171
+A+ L + E+ P+ + +L+ GDLD+G V T+ EF + +DL+ D
Sbjct: 26 LARTGTLLDFELTKDTPEKLSEQLVRGDLDIGPV---TLVEFLKNADDLVAFPD 76
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
Query: 178 CRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFST 237
C LS A+ K G F N+ +L L ++ +R YL P F K N LK + FS+
Sbjct: 107 CGLSDAVLKDGYFRNLKALTRLD-----LSKNQIRSL----YLHPSFGKLNSLKSIDFSS 157
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,371,853
Number of Sequences: 62578
Number of extensions: 295559
Number of successful extensions: 779
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 772
Number of HSP's gapped (non-prelim): 15
length of query: 254
length of database: 14,973,337
effective HSP length: 97
effective length of query: 157
effective length of database: 8,903,271
effective search space: 1397813547
effective search space used: 1397813547
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)