Query 025329
Match_columns 254
No_of_seqs 150 out of 1075
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 08:09:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025329.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025329hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vd3_A ATP phosphoribosyltrans 100.0 6.8E-53 2.3E-57 386.7 13.8 156 82-254 3-158 (289)
2 1ve4_A ATP phosphoribosyltrans 100.0 4.1E-52 1.4E-56 365.9 12.2 148 81-254 3-151 (206)
3 2vd2_A ATP phosphoribosyltrans 100.0 4.1E-52 1.4E-56 367.7 10.5 150 82-254 4-155 (214)
4 1nh8_A ATP phosphoribosyltrans 100.0 6.1E-52 2.1E-56 382.5 11.9 154 81-254 19-172 (304)
5 1z7m_E ATP phosphoribosyltrans 100.0 1.6E-52 5.3E-57 368.9 5.9 151 83-254 1-153 (208)
6 1h3d_A ATP-phosphoribosyltrans 100.0 1.7E-51 5.9E-56 378.9 11.7 159 80-254 3-167 (299)
7 1o63_A ATP phosphoribosyltrans 100.0 1.4E-50 4.8E-55 358.9 7.8 146 82-254 1-146 (219)
8 3ix1_A N-formyl-4-amino-5-amin 96.5 0.0015 5E-08 56.4 3.7 92 135-240 45-142 (302)
9 3qsl_A Putative exported prote 96.1 0.0041 1.4E-07 53.7 4.0 99 134-244 74-179 (346)
10 2v25_A Major cell-binding fact 95.5 0.03 1E-06 45.5 6.6 97 127-242 83-183 (259)
11 1wdn_A GLNBP, glutamine bindin 94.8 0.088 3E-06 41.6 7.3 94 129-240 45-138 (226)
12 1ii5_A SLR1257 protein; membra 94.5 0.042 1.4E-06 43.8 4.7 90 127-230 46-136 (233)
13 2pyy_A Ionotropic glutamate re 94.4 0.028 9.7E-07 44.6 3.5 90 127-231 42-133 (228)
14 2x26_A Periplasmic aliphatic s 94.1 0.038 1.3E-06 47.3 4.0 98 127-238 34-139 (308)
15 4esw_A Pyrimidine biosynthesis 94.1 0.027 9.2E-07 50.0 3.0 94 134-240 48-146 (342)
16 2yjp_A Putative ABC transporte 94.0 0.11 3.8E-06 44.3 6.6 95 127-240 99-193 (291)
17 4ef1_A Pheromone COB1/lipoprot 93.9 0.11 3.8E-06 46.3 6.8 101 84-187 103-211 (246)
18 3kzg_A Arginine 3RD transport 93.4 0.34 1.2E-05 39.1 8.4 96 129-243 47-142 (237)
19 3ksx_A Nitrate transport prote 93.4 0.11 3.6E-06 45.3 5.6 91 134-238 68-165 (324)
20 3uif_A Sulfonate ABC transport 93.4 0.12 4.3E-06 45.5 6.1 88 135-239 58-154 (348)
21 3un6_A Hypothetical protein sa 93.3 0.055 1.9E-06 47.7 3.7 91 134-239 92-190 (341)
22 4f3p_A Glutamine-binding perip 92.4 0.42 1.4E-05 39.0 7.6 94 129-240 66-159 (249)
23 2yln_A Putative ABC transporte 92.3 0.068 2.3E-06 45.5 2.8 86 127-230 98-184 (283)
24 1xt8_A Putative amino-acid tra 92.3 0.34 1.2E-05 40.9 7.1 95 127-240 88-182 (292)
25 2q88_A EHUB, putative ABC tran 92.3 0.32 1.1E-05 39.6 6.7 94 133-239 60-153 (257)
26 3h7m_A Sensor protein; histidi 91.9 0.26 8.8E-06 39.2 5.6 95 127-240 52-146 (234)
27 2iee_A ORF2, probable ABC tran 91.6 0.79 2.7E-05 38.2 8.5 92 129-239 67-158 (271)
28 2y7i_A STM4351; arginine-bindi 91.2 0.46 1.6E-05 37.6 6.4 88 132-239 52-140 (229)
29 2vha_A Periplasmic binding tra 90.9 0.31 1.1E-05 40.8 5.4 97 127-242 65-165 (287)
30 2pvu_A ARTJ; basic amino acid 90.0 0.21 7.3E-06 41.6 3.5 83 128-228 83-165 (272)
31 4got_A Methionine-binding lipo 89.4 1.2 4.1E-05 39.7 8.1 101 84-187 106-213 (249)
32 3tql_A Arginine-binding protei 89.0 0.47 1.6E-05 37.3 4.7 116 91-241 25-140 (227)
33 3hv1_A Polar amino acid ABC up 88.8 0.51 1.7E-05 39.0 4.9 83 129-229 64-146 (268)
34 2x7q_A Ca3427, possible thiami 88.8 0.37 1.3E-05 42.0 4.3 93 136-242 57-156 (321)
35 4ab5_A Transcriptional regulat 88.7 0.73 2.5E-05 35.9 5.6 119 79-231 5-131 (222)
36 3ho7_A OXYR; beta-alpha-barrel 88.3 0.59 2E-05 36.9 4.8 121 79-230 8-133 (232)
37 3kbr_A Cyclohexadienyl dehydra 88.2 1.9 6.5E-05 34.5 7.9 97 129-240 58-154 (239)
38 4i62_A Amino acid ABC transpor 88.1 0.56 1.9E-05 38.2 4.7 91 133-240 89-179 (269)
39 3fxq_A LYSR type regulator of 87.9 1.4 4.7E-05 37.1 7.1 90 125-230 119-214 (305)
40 3tqw_A Methionine-binding prot 87.8 1.9 6.5E-05 38.3 8.2 98 84-187 103-206 (240)
41 1lst_A Lysine, arginine, ornit 87.5 0.48 1.7E-05 37.9 3.9 83 129-228 47-129 (239)
42 1xs5_A 29 kDa protein, membran 86.8 1 3.5E-05 39.2 5.8 76 84-163 102-182 (241)
43 2zzv_A ABC transporter, solute 86.0 2.3 7.9E-05 38.3 8.0 25 133-157 79-103 (361)
44 2hzl_A Trap-T family sorbitol/ 85.8 2.2 7.5E-05 38.4 7.7 25 132-156 77-101 (365)
45 3gxa_A Outer membrane lipoprot 85.4 1.7 5.7E-05 39.4 6.7 97 84-187 123-225 (275)
46 3del_B Arginine binding protei 85.3 0.61 2.1E-05 37.5 3.4 91 129-240 54-146 (242)
47 3qax_A Probable ABC transporte 84.8 0.56 1.9E-05 38.1 3.0 92 129-240 74-167 (268)
48 2esn_A Probable transcriptiona 84.7 2.8 9.5E-05 35.1 7.4 91 125-231 128-226 (310)
49 4eq9_A ABC transporter substra 84.4 1.3 4.3E-05 35.5 4.9 84 127-227 49-132 (246)
50 3k2d_A ABC-type metal ION tran 84.3 2.1 7.1E-05 38.0 6.6 97 84-187 106-209 (237)
51 3ir1_A Outer membrane lipoprot 84.2 2 7E-05 38.3 6.6 98 84-187 101-204 (245)
52 1us5_A Putative GLUR0 ligand b 84.0 2.5 8.7E-05 35.9 7.0 121 82-231 19-157 (314)
53 2y7p_A LYSR-type regulatory pr 83.9 1.5 5E-05 35.2 5.1 102 125-243 35-141 (218)
54 4ddd_A Immunogenic protein; ss 83.7 1.8 6E-05 38.6 6.0 140 79-244 29-187 (327)
55 1ixc_A CBNR, LYSR-type regulat 83.1 2 6.9E-05 35.5 5.8 100 125-243 118-227 (294)
56 3k4u_A Binding component of AB 82.5 3.7 0.00012 33.1 7.0 95 131-240 50-144 (245)
57 3up9_A Putative uncharacterize 82.2 1.3 4.5E-05 39.4 4.5 78 84-163 107-185 (245)
58 2fyi_A HTH-type transcriptiona 81.4 2.2 7.6E-05 34.0 5.3 92 125-231 41-138 (228)
59 2pfz_A Putative exported prote 80.6 2.8 9.5E-05 36.8 6.0 24 132-155 45-68 (301)
60 3mpk_A Virulence sensor protei 80.0 3.6 0.00012 34.0 6.3 88 134-240 81-168 (267)
61 2v3u_A Glutamate receptor delt 79.9 4.4 0.00015 32.8 6.7 82 135-231 68-149 (265)
62 4dz1_A DALS D-alanine transpor 79.1 3.6 0.00012 33.8 6.0 83 129-227 72-154 (259)
63 3g3k_A Glutamate receptor, ion 79.1 7.7 0.00026 31.5 7.9 81 135-230 72-152 (259)
64 1atg_A MODA, periplasmic molyb 78.8 1.3 4.3E-05 35.0 2.9 95 127-230 29-130 (231)
65 3n5l_A Binding protein compone 78.3 4.9 0.00017 35.3 6.9 109 135-253 47-171 (310)
66 1p99_A Hypothetical protein PG 76.7 4.9 0.00017 35.8 6.5 75 84-162 138-217 (295)
67 1al3_A Cys regulon transcripti 76.1 3.8 0.00013 34.9 5.4 92 125-231 120-217 (324)
68 2hxr_A HTH-type transcriptiona 75.7 5.9 0.0002 31.4 6.1 89 127-231 61-153 (238)
69 2czl_A Hypothetical protein TT 75.2 1.4 4.9E-05 36.9 2.4 32 126-157 31-62 (272)
70 2pfy_A Putative exported prote 74.9 6.9 0.00024 34.1 6.9 24 132-155 46-69 (301)
71 3p7i_A PHND, subunit of alkylp 74.8 3.6 0.00012 36.7 5.1 88 135-231 57-154 (321)
72 3jv9_A OXYR, transcriptional r 74.7 7.9 0.00027 29.7 6.5 64 127-200 35-100 (219)
73 2h9b_A HTH-type transcriptiona 74.5 3.6 0.00012 34.8 4.8 66 125-200 117-188 (312)
74 3r26_A Molybdate-binding perip 74.1 2.6 9E-05 35.3 3.8 91 127-230 36-142 (237)
75 1mqi_A Glutamate receptor 2; G 73.9 10 0.00035 30.9 7.3 81 135-230 72-152 (263)
76 3hn0_A Nitrate transport prote 73.6 1.4 4.7E-05 38.3 1.9 56 84-157 97-155 (283)
77 3gzg_A Molybdate-binding perip 71.5 3.2 0.00011 35.7 3.8 94 127-230 52-158 (253)
78 4gvo_A LMO2349 protein; struct 71.1 4.5 0.00015 33.0 4.5 92 128-236 52-147 (243)
79 4ib2_A Putative lipoprotein; p 70.7 5.2 0.00018 35.7 5.0 76 84-163 110-190 (252)
80 3hn0_A Nitrate transport prote 70.3 1.8 6E-05 37.5 1.9 118 80-239 3-129 (283)
81 1uth_A LYSR-type regulatory pr 70.0 13 0.00043 31.5 7.2 91 125-231 132-227 (315)
82 3un6_A Hypothetical protein sa 69.2 18 0.00061 31.4 8.2 66 76-156 146-213 (341)
83 2h98_A HTH-type transcriptiona 68.8 5.3 0.00018 34.1 4.6 67 125-201 117-189 (313)
84 4h5g_A Amino acid ABC superfam 68.6 11 0.00037 30.7 6.3 96 129-241 58-153 (243)
85 3fzv_A Probable transcriptiona 68.2 7.4 0.00025 32.2 5.2 86 128-231 127-218 (306)
86 2de3_A Dibenzothiophene desulf 67.7 3.9 0.00013 36.9 3.6 50 180-241 101-182 (365)
87 2ql3_A Probable transcriptiona 67.5 6.3 0.00022 30.4 4.4 89 125-231 32-128 (209)
88 1zbm_A Hypothetical protein AF 66.9 4.8 0.00016 33.8 3.9 32 127-158 40-71 (280)
89 2g29_A Nitrate transport prote 66.8 10 0.00035 34.6 6.3 100 135-239 74-192 (417)
90 3oxn_A Putative transcriptiona 64.6 18 0.00061 28.7 6.7 65 127-201 50-115 (241)
91 2g29_A Nitrate transport prote 64.2 12 0.0004 34.2 6.2 63 80-156 152-215 (417)
92 2i49_A Bicarbonate transporter 58.6 10 0.00035 35.2 4.8 60 83-156 163-223 (429)
93 2vpn_A Periplasmic substrate b 57.8 10 0.00035 33.4 4.4 50 191-253 130-181 (316)
94 4ecf_A ABC-type phosphate tran 57.6 13 0.00045 31.8 5.1 97 127-228 34-140 (264)
95 1i6a_A OXYR, hydrogen peroxide 57.4 8.9 0.0003 30.1 3.6 67 125-201 32-102 (219)
96 2rc8_A Glutamate [NMDA] recept 55.6 25 0.00085 29.7 6.4 120 91-228 69-188 (294)
97 3uif_A Sulfonate ABC transport 54.2 31 0.0011 30.0 6.9 66 75-156 111-177 (348)
98 2f5x_A BUGD; periplasmic bindi 49.9 13 0.00045 33.2 3.9 99 139-245 65-178 (312)
99 3ksx_A Nitrate transport prote 49.1 33 0.0011 29.3 6.2 66 76-157 124-190 (324)
100 3kos_A HTH-type transcriptiona 48.0 11 0.00036 29.3 2.6 73 139-230 52-124 (219)
101 2dvz_A BUGE, putative exported 45.2 13 0.00044 33.3 3.0 67 175-246 112-183 (314)
102 2qpq_A Protein BUG27; alpha/be 44.9 23 0.00078 31.3 4.6 100 139-246 56-170 (301)
103 1yae_A Glutamate receptor, ion 44.9 41 0.0014 28.4 6.1 84 135-230 81-186 (312)
104 3hhg_A Transcriptional regulat 44.4 15 0.00052 30.2 3.2 67 124-201 119-187 (306)
105 4exl_A PBP 1, phosphate-bindin 42.5 34 0.0012 29.3 5.2 69 127-201 34-103 (265)
106 3qsl_A Putative exported prote 42.3 60 0.0021 27.2 6.7 67 76-157 131-199 (346)
107 2i49_A Bicarbonate transporter 42.1 42 0.0014 31.0 6.1 95 134-238 76-199 (429)
108 3s5p_A Ribose 5-phosphate isom 41.9 11 0.00039 31.8 2.0 69 75-151 13-84 (166)
109 3cvg_A Putative metal binding 40.9 25 0.00084 30.3 4.1 60 127-189 56-116 (294)
110 3hhf_B Transcriptional regulat 40.3 23 0.00078 27.0 3.4 66 125-201 34-101 (213)
111 2nxo_A Hypothetical protein SC 39.1 9.3 0.00032 32.8 1.1 29 126-154 34-62 (291)
112 3i6v_A Periplasmic His/Glu/Gln 38.7 52 0.0018 26.1 5.5 79 129-230 48-126 (232)
113 2x26_A Periplasmic aliphatic s 38.1 59 0.002 27.2 5.9 65 77-157 99-164 (308)
114 2de3_A Dibenzothiophene desulf 35.8 28 0.00097 31.2 3.8 20 137-156 210-229 (365)
115 3lr1_A Tungstate ABC transport 34.9 9.1 0.00031 33.3 0.3 62 126-190 35-96 (236)
116 3k6v_A Solute-binding protein 33.8 21 0.00071 32.7 2.6 26 135-160 230-255 (354)
117 3szp_A Transcriptional regulat 33.3 16 0.00056 29.5 1.6 66 125-201 118-185 (291)
118 3tmg_A Glycine betaine, L-prol 32.9 13 0.00046 32.4 1.1 131 80-238 14-158 (280)
119 3k6v_A Solute-binding protein 32.3 28 0.00097 31.8 3.2 106 81-220 42-162 (354)
120 1iej_A Ovotransferrin; iron, m 31.1 63 0.0021 29.5 5.3 90 127-230 34-137 (332)
121 1twy_A ABC transporter, peripl 30.8 48 0.0017 26.7 4.1 57 127-189 58-114 (290)
122 1h45_A Lactoferrin; metal tran 30.8 42 0.0015 30.6 4.1 71 125-200 33-111 (334)
123 1ryo_A Serotransferrin; iron t 28.7 39 0.0013 30.8 3.5 26 135-160 46-71 (327)
124 2vvp_A Ribose-5-phosphate isom 25.9 14 0.00048 31.0 -0.1 64 82-152 2-68 (162)
125 3isp_A HTH-type transcriptiona 24.9 34 0.0012 28.3 2.2 66 126-201 121-189 (303)
126 3muq_A Uncharacterized conserv 23.7 27 0.00091 30.3 1.3 61 126-189 35-95 (237)
127 2a5s_A N-methyl-D-aspartate re 23.6 95 0.0032 25.8 4.8 83 135-227 95-178 (284)
128 1whz_A Hypothetical protein; a 21.0 98 0.0033 21.3 3.6 55 95-151 7-63 (70)
129 2duw_A Putative COA-binding pr 20.9 24 0.00083 27.8 0.4 34 81-114 14-48 (145)
130 2czl_A Hypothetical protein TT 20.3 94 0.0032 25.5 4.0 30 128-157 120-150 (272)
No 1
>2vd3_A ATP phosphoribosyltransferase; metal-binding, glycosyltransferase, HISG, histidine, magnesi transferase; HET: HIS; 2.45A {Methanobacterium thermoautotrophicum}
Probab=100.00 E-value=6.8e-53 Score=386.75 Aligned_cols=156 Identities=28% Similarity=0.526 Sum_probs=141.6
Q ss_pred CceEEEecCCCCChHHHHHHHHhCCCccCCCCCCceEeecCCCCCeEEEeecCcchhhhhhcCceeeeeeccceeecccC
Q 025329 82 DEIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQ 161 (254)
Q Consensus 82 ~~LrIALPsKGRL~e~tl~LL~~aGi~v~~~~~R~L~~~~~~~p~iev~~vRp~DIp~yV~~G~aDlGIvG~DvL~E~~~ 161 (254)
+||||||||||||++++++||++|||++...++|+|++.+.+ ++++++|+||+|||+||++|.+|+||||+|||.|++.
T Consensus 3 ~mL~iAlpkkGRL~e~t~~ll~~aGi~~~~~~~R~l~~~~~~-~~i~~~~~R~~DIp~yV~~G~~DlGItG~D~l~E~~~ 81 (289)
T 2vd3_A 3 PKIRIAVPSKGRISEPAIRLLENAGVGLKDTVNRKLFSKTQH-PQIEVMFSRAADIPEFVADGAADLGITGYDLIVERGS 81 (289)
T ss_dssp CCEEEEEESSSTTHHHHHHHHHHTTCCEESCCTTCSEEEESS-TTEEEEEECTTTHHHHHHHTSSSEEEEEHHHHHHHTC
T ss_pred ceEEEEECCCCccHHHHHHHHHHCCCCCCCCCCceeEEEcCC-CCEEEEEEChhhHHHHHhCCCccEEEeeeeeeeecCC
Confidence 369999998899999999999999999988666999999877 6899999999999999999999999999999999986
Q ss_pred CCcceeeecCCCCcccEEEEEEEeCCCccccccchHHhhcCCcccCCCCcEEEcCCCccHHHHHHHcCCceEEEEEcCCc
Q 025329 162 GNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGA 241 (254)
Q Consensus 162 d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~~~r~lRVATkYPnLarkyf~~~Gi~~veIi~l~GS 241 (254)
+ +++++ |||||+|||+||+|++ | ++++++||. .++||||||||+|++||+++|++ ++|++++||
T Consensus 82 ~---v~el~-dLgfG~crl~vAvp~~--~-~~~~~~~l~--------~~~RIATkyp~l~~~yf~~~gi~-~~ii~l~Gs 145 (289)
T 2vd3_A 82 D---VEILE-DLKYGRASLVLAAPED--S-TIRGPEDIP--------RGAVIATEFPGITENYLREHGID-AEVVELTGS 145 (289)
T ss_dssp C---CEEEE-ECSCSCEEEEEEEETT--S-SCCSGGGCC--------TTCEEEESCHHHHHHHHHHTTCC-CEEEECSSC
T ss_pred C---ceEEe-cCCCCCEEEEEEEECC--C-CCCCHHHhc--------CCCEEEeCcHHHHHHHHHHcCCc-EEEEECCCc
Confidence 5 44433 8999999999999999 4 566777762 15899999999999999999995 999999999
Q ss_pred eecccCCCccccC
Q 025329 242 LEAAPAVRITHLL 254 (254)
Q Consensus 242 vElAP~lGlADaI 254 (254)
+|+||.+|+||+|
T Consensus 146 vE~ap~~GlADaI 158 (289)
T 2vd3_A 146 TEIAPFIGVADLI 158 (289)
T ss_dssp GGGTTTTTSCSEE
T ss_pred eeeccCCCcccEE
Confidence 9999999999997
No 2
>1ve4_A ATP phosphoribosyltransferase; riken structural genomics/proteomics initiative structural genomics; 1.20A {Thermus thermophilus} SCOP: c.94.1.1
Probab=100.00 E-value=4.1e-52 Score=365.92 Aligned_cols=148 Identities=26% Similarity=0.385 Sum_probs=132.0
Q ss_pred CCceEEEecCCCCChHHHHHHHHhCCCccCCC-CCCceEeecCCCCCeEEEeecCcchhhhhhcCceeeeeeccceeecc
Q 025329 81 RDEIRLGLPSKGRMAADTLDLLKDCQLSVKQV-NPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEF 159 (254)
Q Consensus 81 ~~~LrIALPsKGRL~e~tl~LL~~aGi~v~~~-~~R~L~~~~~~~p~iev~~vRp~DIp~yV~~G~aDlGIvG~DvL~E~ 159 (254)
++||||||| ||||++++++||++|||++... ++|+|++.++ ++++++|+||+|||+||++|.+|+||||+|||.|+
T Consensus 3 ~~~L~iAlp-KGRL~e~t~~ll~~aGi~~~~~~~~R~l~~~~~--~~i~~~~~R~~DIp~yV~~G~~DlGItG~D~l~E~ 79 (206)
T 1ve4_A 3 RFALTVALP-KGRMFREAYEVLKRAGLDLPEVEGERTLLHGKE--GGVALLELRNKDVPIYVDLGIAEIGVVGKDVLLDS 79 (206)
T ss_dssp TSSEEEEEE-CSTTHHHHHHHHHHTTCCCCCC-----CEECCT--TSEEEEEECGGGHHHHHHTTSSSEEEEEHHHHHHC
T ss_pred CccEEEEEc-CcccHHHHHHHHHHcCCCCcCCCCCcceEecCC--CCeEEEEECchhHHHHHhCCCccEEEeeeeeeeec
Confidence 578999999 9999999999999999999885 2799999875 68999999999999999999999999999999999
Q ss_pred cCCCcceeeecCCCCcccEEEEEEEeCCCccccccchHHhhcCCcccCCCCcEEEcCCCccHHHHHHHcCCceEEEEEcC
Q 025329 160 GQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTAD 239 (254)
Q Consensus 160 ~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~~~r~lRVATkYPnLarkyf~~~Gi~~veIi~l~ 239 (254)
+.+ +++++ |||||+|||+||+|++ |. .. ++||||||||+|++||+++|++ ++|++++
T Consensus 80 ~~~---v~el~-dLgfG~crl~vAvp~~--~~---------------~~-~~RIATkyp~l~~~yf~~~gi~-~~ii~l~ 136 (206)
T 1ve4_A 80 GRD---LFEPV-DLGFGACRLSLIRRPG--DT---------------GP-IRRVATKYPNFTARLLKERGWA-ADVVELS 136 (206)
T ss_dssp CSC---CEEEE-ECCCSCEEEEEEECTT--CC---------------SC-CCEEEESCHHHHHHHHHHTTCC-CEEEECS
T ss_pred CCC---eEEee-ccccCcEEEEEEEECC--cc---------------cC-CCEEEECchHHHHHHHHHCCCc-EEEEECC
Confidence 865 44433 8999999999999998 41 22 5899999999999999999995 9999999
Q ss_pred CceecccCCCccccC
Q 025329 240 GALEAAPAVRITHLL 254 (254)
Q Consensus 240 GSvElAP~lGlADaI 254 (254)
||+|+||.+|+||+|
T Consensus 137 GsvE~ap~~GlAD~I 151 (206)
T 1ve4_A 137 GNIELAAVTGLADAV 151 (206)
T ss_dssp SCTHHHHHTTSSSEE
T ss_pred CceeeccCCCCceEE
Confidence 999999999999997
No 3
>2vd2_A ATP phosphoribosyltransferase; HISG, glycosyltransferase, histidine biosynthes amino-acid biosynthesis; 2.85A {Bacillus subtilis}
Probab=100.00 E-value=4.1e-52 Score=367.69 Aligned_cols=150 Identities=22% Similarity=0.443 Sum_probs=135.5
Q ss_pred CceEEEecCCCCChHHHHHHHHhCCCccCCC--CCCceEeecCCCCCeEEEeecCcchhhhhhcCceeeeeeccceeecc
Q 025329 82 DEIRLGLPSKGRMAADTLDLLKDCQLSVKQV--NPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEF 159 (254)
Q Consensus 82 ~~LrIALPsKGRL~e~tl~LL~~aGi~v~~~--~~R~L~~~~~~~p~iev~~vRp~DIp~yV~~G~aDlGIvG~DvL~E~ 159 (254)
.||||||| ||||++++++||++|||++... ++|+|++.+++ ++++++|+||+|||+||++|.+|+||||+|||.|+
T Consensus 4 ~mL~iAlp-KGRL~e~t~~ll~~aGi~~~~~~~~~R~l~~~~~~-~~v~~~~~R~~DIp~yV~~G~~DlGItG~D~l~E~ 81 (214)
T 2vd2_A 4 KLLTMAMP-KGRIFEEAAGLLRQAGYRLPEEFEDSRKLIIDVPE-ENLRFILAKPMDVTTYVEHGVADVGIAGKDVMLEE 81 (214)
T ss_dssp CCEEEEEE-CSTTHHHHHHHHHHHTCCCCGGGTTCCCSEEEEGG-GTEEEEEECTTHHHHHHHHTSSSEEECCTHHHHSC
T ss_pred ccEEEEEc-ccccHHHHHHHHHHcCCCccCCCCCCCceEeecCC-CCEEEEEECchhHHHHHhCCCccEEEeeeeeeeec
Confidence 47999999 9999999999999999998863 47999999876 78999999999999999999999999999999999
Q ss_pred cCCCcceeeecCCCCcccEEEEEEEeCCCccccccchHHhhcCCcccCCCCcEEEcCCCccHHHHHHHcCCceEEEEEcC
Q 025329 160 GQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTAD 239 (254)
Q Consensus 160 ~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~~~r~lRVATkYPnLarkyf~~~Gi~~veIi~l~ 239 (254)
+.+ +++++ |||||+|||+||+|++ | ++ ... ++||||||||+|++||+++|++ ++|++++
T Consensus 82 ~~~---v~el~-dLgfG~crl~vAvp~~--~-~~------------~~~-~~RIATkyp~l~~~yf~~~gi~-~~ii~l~ 140 (214)
T 2vd2_A 82 ERD---VYEVL-DLNISKCHLAVAGLPN--T-DW------------SGV-APRIATKYPNVASSYFREQGEQ-VEIIKLN 140 (214)
T ss_dssp SCS---SEEEE-ECTTSCCEEEEEECTT--C-CC------------CSS-SCEEEESCHHHHHHHHHHHCCC-CEEEECC
T ss_pred CCC---eEEee-ccccCCEEEEEEEECC--C-Ch------------hhC-CcEEEECcHHHHHHHHHHcCCc-EEEEECC
Confidence 865 44433 8999999999999998 4 21 123 6899999999999999999995 9999999
Q ss_pred CceecccCCCccccC
Q 025329 240 GALEAAPAVRITHLL 254 (254)
Q Consensus 240 GSvElAP~lGlADaI 254 (254)
||+|+||.+|+||+|
T Consensus 141 GsvE~aP~~GlADaI 155 (214)
T 2vd2_A 141 GSIELAPLIGLADRI 155 (214)
T ss_dssp SCTTHHHHTTSCSEE
T ss_pred CceeeccCCCCceEE
Confidence 999999999999997
No 4
>1nh8_A ATP phosphoribosyltransferase; prtase, de novo His biosynthesis, PRPP, structural genomics, PSI, protei structure initiative; HET: AMP HIS; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.94.1.1 d.58.5.3 PDB: 1nh7_A*
Probab=100.00 E-value=6.1e-52 Score=382.53 Aligned_cols=154 Identities=27% Similarity=0.432 Sum_probs=139.3
Q ss_pred CCceEEEecCCCCChHHHHHHHHhCCCccCCCCCCceEeecCCCCCeEEEeecCcchhhhhhcCceeeeeeccceeeccc
Q 025329 81 RDEIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFG 160 (254)
Q Consensus 81 ~~~LrIALPsKGRL~e~tl~LL~~aGi~v~~~~~R~L~~~~~~~p~iev~~vRp~DIp~yV~~G~aDlGIvG~DvL~E~~ 160 (254)
..||||||||||||++++++||++|||++.. .+|+|++.+.+ ++++|+|+||+|||+||++|.+|+||||+|||.|++
T Consensus 19 ~~~L~iAlPkKGRL~e~t~~ll~~aGi~~~~-~~R~l~~~~~~-~~i~~~~~R~~DIp~yV~~G~~DlGItG~D~l~E~~ 96 (304)
T 1nh8_A 19 GMMLRVAVPNKGALSEPATEILAEAGYRRRT-DSKDLTVIDPV-NNVEFFFLRPKDIAIYVGSGELDFGITGRDLVCDSG 96 (304)
T ss_dssp --CEEEEEESSSTTHHHHHHHHHHTTCCCCC-STTCSEEEETT-TTEEEEEECGGGHHHHHHHSSCSEEEEEHHHHHHHT
T ss_pred CeEEEEEECCCCccHHHHHHHHHHCCCCCCC-CCcceEeecCC-CCEEEEEEChhhHHHHHhCCCccEEEeeeeeeeecC
Confidence 4469999998899999999999999999988 57999999877 789999999999999999999999999999999998
Q ss_pred CCCcceeeecCCCCcccEEEEEEEeCCCccccccchHHhhcCCcccCCCCcEEEcCCCccHHHHHHHcCCceEEEEEcCC
Q 025329 161 QGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADG 240 (254)
Q Consensus 161 ~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~~~r~lRVATkYPnLarkyf~~~Gi~~veIi~l~G 240 (254)
.+ +++++ |||||+|||+||+|++ .| ++++||. ++||||||||||++||+++|++ ++|++++|
T Consensus 97 ~~---v~ell-dLgfG~crl~vAvp~~-~~---~~~~~l~---------~~RIATkYp~l~r~yf~~~gi~-~~Ii~l~G 158 (304)
T 1nh8_A 97 AQ---VRERL-ALGFGSSSFRYAAPAG-RN---WTTADLA---------GMRIATAYPNLVRKDLATKGIE-ATVIRLDG 158 (304)
T ss_dssp CC---EEEEE-ECSCCCEEEEEEEETT-SC---CCGGGGT---------TCEEEESCHHHHHHHHHHHTCC-CEEEECSS
T ss_pred CC---ceEEe-cCCcccEEEEEEEECC-Cc---CChHHhC---------CCEEEeCcHHHHHHHHHHCCCe-EEEEECCC
Confidence 65 44443 8999999999999998 44 4566764 5899999999999999999996 99999999
Q ss_pred ceecccCCCccccC
Q 025329 241 ALEAAPAVRITHLL 254 (254)
Q Consensus 241 SvElAP~lGlADaI 254 (254)
|+|+||.+|+||+|
T Consensus 159 svE~aP~~GlADaI 172 (304)
T 1nh8_A 159 AVEISVQLGVADAI 172 (304)
T ss_dssp CCTHHHHTTSCSEE
T ss_pred ceeeccCCCcccEE
Confidence 99999999999997
No 5
>1z7m_E ATP phosphoribosyltransferase; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: c.94.1.1 PDB: 1z7n_E*
Probab=100.00 E-value=1.6e-52 Score=368.95 Aligned_cols=151 Identities=24% Similarity=0.441 Sum_probs=133.6
Q ss_pred ceEEEecCCCCChHHHHHHHHhCCCccCCC--CCCceEeecCCCCCeEEEeecCcchhhhhhcCceeeeeeccceeeccc
Q 025329 83 EIRLGLPSKGRMAADTLDLLKDCQLSVKQV--NPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFG 160 (254)
Q Consensus 83 ~LrIALPsKGRL~e~tl~LL~~aGi~v~~~--~~R~L~~~~~~~p~iev~~vRp~DIp~yV~~G~aDlGIvG~DvL~E~~ 160 (254)
||||||| ||||++++++||++|||++... ++|+|++.+++ +++++|+||+|||+||++|.+|+||||+|||.|++
T Consensus 1 mL~iAlp-KGRL~e~t~~ll~~aGi~~~~~~~~~R~l~~~~~~--~i~~~~~R~~DIp~yV~~G~~DlGItG~D~l~E~~ 77 (208)
T 1z7m_E 1 MIKIAIT-KGRIQKQVTKLLENADYDVEPILNLGRELQIKTKD--DLQIIFGKPNDVITFLEHGIVDIGFVGKDTLDEND 77 (208)
T ss_dssp CCCEEEE-TTHHHHHHHHHHHTTTCCCCCC----CCSEECCTT--SCCEEEECHHHHHHHHHTTSCSEEEEEHHHHHHSS
T ss_pred CEEEEEc-cchhHHHHHHHHHHcCCCcccCCCCCcceEeecCC--CEEEEEECchhHHHHHhCCCccEEEeeeeeeeecC
Confidence 5999999 9999999999999999999874 46999999865 69999999999999999999999999999999997
Q ss_pred CCCcceeeecCCCCcccEEEEEEEeCCCccccccchHHhhcCCcccCCCCcEEEcCCCccHHHHHHHcCCceEEEEEcCC
Q 025329 161 QGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADG 240 (254)
Q Consensus 161 ~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~~~r~lRVATkYPnLarkyf~~~Gi~~veIi~l~G 240 (254)
.+ ++++++ |||||+|||+||+|++ |.. ++ ..+++||||||||+|++||+++|++ ++|++++|
T Consensus 78 ~~--~v~el~-dLgfG~crl~vAvp~~--~~~---~~---------~~~~~RIATkyp~l~~~yf~~~gi~-~~ii~l~G 139 (208)
T 1z7m_E 78 FD--DYYELL-YLKIGQCIFALASYPD--FSN---KN---------FQRHKRIASKYPRVTKKYFAQKQED-IEIIKLEG 139 (208)
T ss_dssp CC--CEEEEE-EETTCCCEEEEEECGG--GGG---CC---------CSSCEEEEESCHHHHHHHHHHTTCC-EEEEECSS
T ss_pred CC--CeEEee-ccccCCEEEEEEEECC--Ccc---ch---------hcCCCEEEECchHHHHHHHHHcCCc-eEEEECCC
Confidence 52 355444 8999999999999998 322 11 2247999999999999999999995 99999999
Q ss_pred ceecccCCCccccC
Q 025329 241 ALEAAPAVRITHLL 254 (254)
Q Consensus 241 SvElAP~lGlADaI 254 (254)
|+|+||.+|+||+|
T Consensus 140 svE~ap~~GlAD~I 153 (208)
T 1z7m_E 140 SVELGPVVGLADAI 153 (208)
T ss_dssp CTTHHHHTTSCSEE
T ss_pred ceeeccCCCcccEE
Confidence 99999999999997
No 6
>1h3d_A ATP-phosphoribosyltransferase; hisitidine biosynthesis, glycosyltransferase; HET: AMP TLA; 2.7A {Escherichia coli} SCOP: c.94.1.1 d.58.5.3 PDB: 1q1k_A*
Probab=100.00 E-value=1.7e-51 Score=378.94 Aligned_cols=159 Identities=24% Similarity=0.483 Sum_probs=139.7
Q ss_pred CCCceEEEecCCCCChHHHHHHHHhCCCccCCCCCCceEeecCCCCCeEEEeecCcchhhhhhcCceeeeeeccceeecc
Q 025329 80 ERDEIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEF 159 (254)
Q Consensus 80 ~~~~LrIALPsKGRL~e~tl~LL~~aGi~v~~~~~R~L~~~~~~~p~iev~~vRp~DIp~yV~~G~aDlGIvG~DvL~E~ 159 (254)
+|++||||||+||||++++++||++|||++.. ++|+|++.+.+. +++|+|+||+|||+||++|.+|+||||+|||.|+
T Consensus 3 ~~~~L~iAlp~KGRL~e~t~~ll~~aGi~~~~-~~R~l~~~~~~~-~v~~~~~R~~DIp~yV~~G~~DlGItG~D~l~E~ 80 (299)
T 1h3d_A 3 DNTRLRIAMQKSGRLSDDSRELLARCGIKINL-HTQRLIAMAENM-PIDILRVRDDDIPGLVMDGVVDLGIIGENVLEEE 80 (299)
T ss_dssp --CCEEEEEESSSTTHHHHHHHHHHTTCCCCC-SSSCSEEECSSS-SEEEEEECGGGHHHHHHTTSSSEEEEEHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHHCCCCCCC-CCceeEeecCCC-CEEEEEeChhHHHHHHhCCCCcEEEeeeeeeecc
Confidence 46789999988999999999999999999987 689999998874 5999999999999999999999999999999998
Q ss_pred cCC------CcceeeecCCCCcccEEEEEEEeCCCccccccchHHhhcCCcccCCCCcEEEcCCCccHHHHHHHcCCceE
Q 025329 160 GQG------NEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHV 233 (254)
Q Consensus 160 ~~d------~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~~~r~lRVATkYPnLarkyf~~~Gi~~v 233 (254)
+.+ ..++++ +.|||||+|||+||+|++..|.+ +++|. ++||||||||||++||+++|++ +
T Consensus 81 ~~~~~~~~~~~~v~e-l~dLgfG~crl~vAvp~~~~~~~---~~~l~---------g~RIATkyp~l~~~yf~~~gi~-~ 146 (299)
T 1h3d_A 81 LLNRRAQGEDPRYFT-LRRLDFGGCRLSLATPVDEAWDG---PLSLN---------GKRIATSYPHLLKRYLDQKGIS-F 146 (299)
T ss_dssp HHHHHHHTCCCCEEE-EEECSCCCEEEEEEEETTSCCCC---GGGGT---------TCEEEESCHHHHHHHHHHHTCC-C
T ss_pred ccccccccCCCcEEE-EeccCcCCEEEEEEEECCCCCCC---hHHhC---------CCEEEeCcHHHHHHHHHHcCCc-E
Confidence 621 124554 44899999999999999865644 44543 5799999999999999999996 9
Q ss_pred EEEEcCCceecccCCCccccC
Q 025329 234 VFSTADGALEAAPAVRITHLL 254 (254)
Q Consensus 234 eIi~l~GSvElAP~lGlADaI 254 (254)
+|++++||+|+||.+|+||+|
T Consensus 147 ~ii~l~GsvE~aP~~GlADaI 167 (299)
T 1h3d_A 147 KSCLLNGSVEVAPRAGLADAI 167 (299)
T ss_dssp EEEECSSCTTHHHHTTSCSEE
T ss_pred EEEECCCceeeccCCCccceE
Confidence 999999999999999999997
No 7
>1o63_A ATP phosphoribosyltransferase; structural genomics; 2.00A {Thermotoga maritima} SCOP: c.94.1.1 PDB: 1o64_A 1usy_E* 1usy_H*
Probab=100.00 E-value=1.4e-50 Score=358.93 Aligned_cols=146 Identities=23% Similarity=0.348 Sum_probs=128.1
Q ss_pred CceEEEecCCCCChHHHHHHHHhCCCccCCCCCCceEeecCCCCCeEEEeecCcchhhhhhcCceeeeeeccceeecccC
Q 025329 82 DEIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQ 161 (254)
Q Consensus 82 ~~LrIALPsKGRL~e~tl~LL~~aGi~v~~~~~R~L~~~~~~~p~iev~~vRp~DIp~yV~~G~aDlGIvG~DvL~E~~~ 161 (254)
+||||||| ||||++++++||++|||++... .| + +.. + ++++++|+||+|||+||++|.+|+||||+|||.|++.
T Consensus 1 ~~L~iAlp-KGRL~e~t~~ll~~aGi~~~~~-~~-~-~~~-~-~~i~~~~~R~~DIp~yV~~G~aDlGItG~D~l~E~~~ 74 (219)
T 1o63_A 1 SLLKLAIP-KGRLEEKVMTYLKKTGVIFERE-SS-I-LRE-G-KDIVCFMVRPFDVPTYLVHGVADIGFCGTDVLLEKET 74 (219)
T ss_dssp --CEEEEE-CSTTHHHHHHHHHHHTCCEEEE-CS-S-EEE-E-TTEEEEEECGGGHHHHHHTTSCSEEEEEHHHHHHSCC
T ss_pred CcEEEEec-CchhHHHHHHHHHHCCCCccCC-cC-e-eec-C-CCeEEEEECchhHHHHHhCCCccEEEeeeEeeeecCC
Confidence 47999999 9999999999999999999874 45 4 444 4 6799999999999999999999999999999999987
Q ss_pred CCcceeeecCCCCcccEEEEEEEeCCCccccccchHHhhcCCcccCCCCcEEEcCCCccHHHHHHHcCCceEEEEEcCCc
Q 025329 162 GNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGA 241 (254)
Q Consensus 162 d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~~~r~lRVATkYPnLarkyf~~~Gi~~veIi~l~GS 241 (254)
++ ++ +.|||||+|||+||+|+++.| ... ++||||||||+|++||+++|++ ++||+++||
T Consensus 75 ~v---~e-lldLgfG~crl~vAvp~~~~~---------------~~~-~~RIATkyp~l~r~yf~~~Gi~-~~Ii~l~Gs 133 (219)
T 1o63_A 75 SL---IQ-PFFIPTNISRMVLAGPKGRGI---------------PEG-EKRIATKFPNVTQRYCESKGWH-CRIIPLKGS 133 (219)
T ss_dssp CC---BC-CSEEEEEEEEEEEEEETTTCC---------------CSS-CEEEEESCHHHHHHHHHHHTCC-EEEEECSSC
T ss_pred Ce---eE-EeccccccEEEEEEEECCCcc---------------ccC-CcEEEECcHHHHHHHHHHCCCc-eEEEECCCc
Confidence 63 43 338999999999999999322 122 6899999999999999999996 999999999
Q ss_pred eecccCCCccccC
Q 025329 242 LEAAPAVRITHLL 254 (254)
Q Consensus 242 vElAP~lGlADaI 254 (254)
||+||.+|+||+|
T Consensus 134 vE~aP~~GlADaI 146 (219)
T 1o63_A 134 VELAPIAGLSDLI 146 (219)
T ss_dssp TTHHHHHTSCSEE
T ss_pred eeeccCCCCccee
Confidence 9999999999997
No 8
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=96.53 E-value=0.0015 Score=56.38 Aligned_cols=92 Identities=13% Similarity=0.025 Sum_probs=59.5
Q ss_pred cchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCccccccchHHhhcCCcccCCCCcEEE
Q 025329 135 KDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVA 214 (254)
Q Consensus 135 ~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~~~r~lRVA 214 (254)
.++...|..|.+|+|+++...+........++..+. . .+......+.++++ .++++++||+ ++|||
T Consensus 45 ~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~-~-~~~~~~~~l~~~~~---s~i~s~~DL~---------Gk~i~ 110 (302)
T 3ix1_A 45 TDPIQLTASGAIPLALSYQPDVILARSKDLPVVSVA-S-VVRSPLNHVMFLAE---QDFDSPADLV---------GLTVG 110 (302)
T ss_dssp THHHHHHHHTSCSEEEECHHHHHHHHHTTCCEEEEE-E-EECSCCEEEEEEGG---GCCSSGGGGT---------TSEEE
T ss_pred chHHHHHHCCCCCEEecCHHHHHHHHHCCCCEEEEE-E-EeccCCEEEEEECC---CCCCChHHcC---------CCEEE
Confidence 388999999999999999554433211112233221 1 22233466777776 4688999986 46888
Q ss_pred cCCC----ccHHHHHHHcCCc--eEEEEEcCC
Q 025329 215 TGFT----YLGPKFMKDNGLK--HVVFSTADG 240 (254)
Q Consensus 215 TkYP----nLarkyf~~~Gi~--~veIi~l~G 240 (254)
+.-. .+.++++++.|++ +++++.+..
T Consensus 111 ~~~~~~~~~~~~~~l~~~Gl~~~~v~~~~~~~ 142 (302)
T 3ix1_A 111 YPGIPVNEPILKTMVEAAGGDYEQVHLMDVGF 142 (302)
T ss_dssp ECSCTTHHHHHHHHHHHTTCCGGGCEEEECTT
T ss_pred eCCCcchHHHHHHHHHHcCCCHHHeEEEecCc
Confidence 7544 3567888889983 478887743
No 9
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=96.08 E-value=0.0041 Score=53.66 Aligned_cols=99 Identities=11% Similarity=0.125 Sum_probs=63.0
Q ss_pred CcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCccccccchHHhhcCCcccCCCCcEE
Q 025329 134 PKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRV 213 (254)
Q Consensus 134 p~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~~~r~lRV 213 (254)
..++...|..|.+|+++.+............++..+ -.+..+ ....+.++++. ..++++++||+ ++||
T Consensus 74 ~~~~~~~l~~G~~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~v~~~~-~~~i~s~~DL~---------Gk~i 141 (346)
T 3qsl_A 74 GSKALQAVVGGSADVVSGAFEHTLSLQAKGQFYRAF-ALQGRA-PMIGVGVSKKN-LPGYKGPADLK---------GRKI 141 (346)
T ss_dssp HHHHHHHHHTTSCSEEEEETHHHHHHHHTTCCEEEE-EESBSS-CCEEEEEETTT-CTTCCSGGGGT---------TCEE
T ss_pred hHHHHHHHHCCCCCEEccchHHHHHHHhCCCCeEEE-EecccC-CCcEEEEecCc-ccCCCChHHcC---------CCEE
Confidence 457888999999999999987664321111223222 123332 23455666652 13688999985 4689
Q ss_pred EcCCCc-----cHHHHHHHcCCc--eEEEEEcCCceec
Q 025329 214 ATGFTY-----LGPKFMKDNGLK--HVVFSTADGALEA 244 (254)
Q Consensus 214 ATkYPn-----Larkyf~~~Gi~--~veIi~l~GSvEl 244 (254)
|+..+. +.+.++++.|++ +++++.+.+.-|+
T Consensus 142 ~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~ 179 (346)
T 3qsl_A 142 GVTAPGSSTNMVVNFFLAKHGLKASDVSFIGVGAGAGA 179 (346)
T ss_dssp EESSTTSHHHHHHHHHHHHTTCCGGGSEEEECCSSHHH
T ss_pred EECCCCcHHHHHHHHHHHHcCCCHHHeEEEecCCcHHH
Confidence 887544 457888999983 5788887654443
No 10
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=95.47 E-value=0.03 Score=45.47 Aligned_cols=97 Identities=16% Similarity=0.070 Sum_probs=63.4
Q ss_pred eEEEeecCcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCccccccchHHhhcCCccc
Q 025329 127 LEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWT 206 (254)
Q Consensus 127 iev~~vRp~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~ 206 (254)
+++......++-..+..|.+|+++.+...-.|.... +... -.+..-.++++++.+. ++++++||.
T Consensus 83 v~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~~~~~----~~~~--~p~~~~~~~~~~~~~~---~i~~~~dL~------ 147 (259)
T 2v25_A 83 IKLVAVNAKTRGPLLDNGSVDAVIATFTITPERKRI----YNFS--EPYYQDAIGLLVLKEK---KYKSLADMK------ 147 (259)
T ss_dssp EEEEECCTTTHHHHHHTTSCSEECSSCBCCHHHHTT----EEEC--SCSEEEEEEEEEEGGG---CCCSGGGCT------
T ss_pred eEEEEcCHHHHHHHHhCCCCCEEEecCccCHHHHhc----Cccc--ccceeCceEEEEeCCC---CCCCHHHhC------
Confidence 455555668889999999999999875443343221 2111 2577788899999883 467888875
Q ss_pred CCCCcEEEcC----CCccHHHHHHHcCCceEEEEEcCCce
Q 025329 207 AEKPLRVATG----FTYLGPKFMKDNGLKHVVFSTADGAL 242 (254)
Q Consensus 207 ~~r~lRVATk----YPnLarkyf~~~Gi~~veIi~l~GSv 242 (254)
++||++. |....++++++.|++ ++++.....-
T Consensus 148 ---g~~i~~~~g~~~~~~~~~~~~~~g~~-~~~~~~~~~~ 183 (259)
T 2v25_A 148 ---GANIGVAQAATTKKAIGEAAKKIGID-VKFSEFPDYP 183 (259)
T ss_dssp ---TCEEEEETTCSHHHHHHHHHHHTTCC-CEEEEESSHH
T ss_pred ---CCEEEEecCCchHHHHHHHHHhcCCc-eeEEEeCCHH
Confidence 3567653 334556667777884 6777655433
No 11
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=94.80 E-value=0.088 Score=41.59 Aligned_cols=94 Identities=16% Similarity=0.119 Sum_probs=63.0
Q ss_pred EEeecCcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCccccccchHHhhcCCcccCC
Q 025329 129 VWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAE 208 (254)
Q Consensus 129 v~~vRp~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~~~ 208 (254)
+......++-..+..|.+|+++.+...-.|.... +.. .-.+.....++.++.+.. .+++++||+
T Consensus 45 ~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~----~~~--~~p~~~~~~~~~~~~~~~--~i~~~~dL~-------- 108 (226)
T 1wdn_A 45 LKPMDFSGIIPALQTKNVDLALAGITITDERKKA----IDF--SDGYYKSGLLVMVKANNN--DVKSVKDLD-------- 108 (226)
T ss_dssp EEEECGGGHHHHHHTTSSSEEEEEEECCHHHHTT----SEE--CSCCEEEEEEEEEETTCC--SCSSSTTTT--------
T ss_pred EEECCHHHHHHHHhCCCCCEEEEcCcCCHHHhCc----ccc--ccchhcCceEEEEeCCCC--CCCCHHHhC--------
Confidence 3334557888999999999999875544443321 111 126777888999988842 577888875
Q ss_pred CCcEEEcCCCccHHHHHHHcCCceEEEEEcCC
Q 025329 209 KPLRVATGFTYLGPKFMKDNGLKHVVFSTADG 240 (254)
Q Consensus 209 r~lRVATkYPnLarkyf~~~Gi~~veIi~l~G 240 (254)
++|||+--......|+++..- .++++....
T Consensus 109 -g~~i~~~~g~~~~~~l~~~~~-~~~~~~~~~ 138 (226)
T 1wdn_A 109 -GKVVAVKSGTGSVDYAKANIK-TKDLRQFPN 138 (226)
T ss_dssp -TCEEEEETTSHHHHHHHHHCC-CSEEEEESS
T ss_pred -CCEEEEEcCCcHHHHHHHhCC-CceEEEeCC
Confidence 478998877788888888622 245554443
No 12
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=94.46 E-value=0.042 Score=43.85 Aligned_cols=90 Identities=18% Similarity=0.079 Sum_probs=61.5
Q ss_pred eEEEee-cCcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCccccccchHHhhcCCcc
Q 025329 127 LEVWFQ-RPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQW 205 (254)
Q Consensus 127 iev~~v-Rp~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~ 205 (254)
+++... ...++-..+..|.+|+++.+...-.|.... +.+.. .-.+.....++.++.+.. .++++++||+
T Consensus 46 ~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~--~~~~~--s~p~~~~~~~~~~~~~~~-~~i~~~~dL~----- 115 (233)
T 1ii5_A 46 SEYVRQNSISAGITAVAEGELDILIGPISVTPERAAI--EGITF--TQPYFSSGIGLLIPGTAT-PLFRSVGDLK----- 115 (233)
T ss_dssp EEEEECSCHHHHHHHHHTTSCSEEEEEEECCHHHHTS--TTEEE--CCCCEEEEEEEEEEGGGT-TTCSSGGGGT-----
T ss_pred EEEEEeCCHHHHHHHHHCCCcCEEEeeeecCcccccc--ceeEE--ccceeecCeEEEEECCCC-CCCCCHHHhC-----
Confidence 444444 457888899999999998875544443200 11211 235667788888888742 2678888985
Q ss_pred cCCCCcEEEcCCCccHHHHHHHcCC
Q 025329 206 TAEKPLRVATGFTYLGPKFMKDNGL 230 (254)
Q Consensus 206 ~~~r~lRVATkYPnLarkyf~~~Gi 230 (254)
++|||+--......+|++.++
T Consensus 116 ----g~~v~~~~g~~~~~~l~~~~~ 136 (233)
T 1ii5_A 116 ----NKEVAVVRDTTAVDWANFYQA 136 (233)
T ss_dssp ----TCEEEEETTSHHHHHHHHTTC
T ss_pred ----CCeEEEECCccHHHHHHHcCC
Confidence 478998877888889988865
No 13
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=94.35 E-value=0.028 Score=44.56 Aligned_cols=90 Identities=14% Similarity=0.182 Sum_probs=59.0
Q ss_pred eEEEee-cCcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCcc-ccccchHHhhcCCc
Q 025329 127 LEVWFQ-RPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIF-ENINSLRELAQMPQ 204 (254)
Q Consensus 127 iev~~v-Rp~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~-~dv~sl~dL~~~~~ 204 (254)
+++... ...++-..+..|.+|+++.+...-.|... .+.. .-.+.....++.++.+... ..+++++||+
T Consensus 42 ~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~----~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~dL~---- 111 (228)
T 2pyy_A 42 SKLIEYSSVPELISAIKDNKVNLGIAAISITAEREQ----NFDF--SLPIFASGLQIMVRNLESGTGDIRSIDDLP---- 111 (228)
T ss_dssp EEEEECSSHHHHHHHHHTTSCSEECSSCBCCHHHHH----HSEE--CSCSEEEEEEEEEEC-----CCCCSGGGCT----
T ss_pred EEEEEcCCHHHHHHHHHCCCcCEEEeccccCHHHHc----ccee--cccchhcceEEEEECCccccCCcCCHHHcC----
Confidence 344444 23678889999999999877554444321 1111 2366777888888876311 2577888875
Q ss_pred ccCCCCcEEEcCCCccHHHHHHHcCCc
Q 025329 205 WTAEKPLRVATGFTYLGPKFMKDNGLK 231 (254)
Q Consensus 205 ~~~~r~lRVATkYPnLarkyf~~~Gi~ 231 (254)
++|||+--.....+||++.|++
T Consensus 112 -----g~~i~~~~g~~~~~~l~~~~~~ 133 (228)
T 2pyy_A 112 -----GKVVATTAGSTAATYLREHHIS 133 (228)
T ss_dssp -----TCEEEEETTSHHHHHHHHTTCE
T ss_pred -----CCeEEEEcCcHHHHHHHHcCCc
Confidence 4689987777788999998873
No 14
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=94.13 E-value=0.038 Score=47.34 Aligned_cols=98 Identities=18% Similarity=0.152 Sum_probs=58.0
Q ss_pred eEEEeecC-cchhhhhhcCceeeeeeccceee-cccCCCcceeeecCCCCcccEEEEEEEeCCCccccccchHHhhcCCc
Q 025329 127 LEVWFQRP-KDIVRKLLSGDLDLGIVGLDTVS-EFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQ 204 (254)
Q Consensus 127 iev~~vRp-~DIp~yV~~G~aDlGIvG~DvL~-E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~ 204 (254)
+++..... .++-..|..|.+|+|++|..... ..... .++..+. ...+.....++.++++ .++++++||+
T Consensus 34 v~~~~~~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~g-~~~~~~~-~~~~~~~~~~lv~~~~---~~i~s~~dL~---- 104 (308)
T 2x26_A 34 ISWVEFPAGPQMLEALNVGSIDLGSTGDIPPIFAQAAG-ADLVYVG-VEPPKPKAEVILVAEN---SPIKTVADLK---- 104 (308)
T ss_dssp EEEEECSSHHHHHHHHHHTSCSEEEECSHHHHHHHHTT-CCEEEEE-EECCCGGGEEEEEETT---CSCCSGGGGT----
T ss_pred eEEEECCCcHHHHHHHHCCCCCEEcccCcHHHHHHhcC-CCeEEEE-EecCCCCceEEEEeCC---CCCCCHHHcC----
Confidence 44444444 68999999999999999865422 11111 1222111 2223333456777777 3578889986
Q ss_pred ccCCCCcEEEcCCC----ccHHHHHHHcCCc--eEEEEEc
Q 025329 205 WTAEKPLRVATGFT----YLGPKFMKDNGLK--HVVFSTA 238 (254)
Q Consensus 205 ~~~~r~lRVATkYP----nLarkyf~~~Gi~--~veIi~l 238 (254)
++||++.-- .+.+++|++.|++ +++++..
T Consensus 105 -----Gk~i~~~~gs~~~~~l~~~l~~~Gl~~~~v~~~~~ 139 (308)
T 2x26_A 105 -----GHKVAFQKGSSSHNLLLRALRQAGLKFTDIQPTYL 139 (308)
T ss_dssp -----TSEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEEC
T ss_pred -----CCEEeeeCCCcHHHHHHHHHHHcCCCHHHeEEEec
Confidence 367887421 2345678888984 3555544
No 15
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=94.06 E-value=0.027 Score=49.96 Aligned_cols=94 Identities=13% Similarity=0.056 Sum_probs=56.7
Q ss_pred CcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCccccccchHHhhcCCcccCCCCcEE
Q 025329 134 PKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRV 213 (254)
Q Consensus 134 p~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~~~r~lRV 213 (254)
+.|+...|..|.+|+|+.|.+.++-......++..+. .+.-..+...+..+.. ..+++++||+ ++||
T Consensus 48 ~~~~~~al~sG~~D~g~~~~~~~~~a~~~G~~v~~v~-~~~~~~~~~~~~~~~~---~~~~~~~dLk---------GK~i 114 (342)
T 4esw_A 48 PSDVTELVGSGKVDMGLKAMVGTLAAKARGFPVTSIG-SLLDEPFTGICYLEGS---GITSDFQSLK---------GKRI 114 (342)
T ss_dssp GGGHHHHHHHTSSSEEEEEHHHHHHHHHTTCCEEEEE-EEECSCCEEEEEETTS---SCCSSGGGGT---------TCEE
T ss_pred hHHHHHHHHcCCcCEEEecHHHHHHHHHCCCCeEEEE-EeccCCcccccccccc---cccCCHHHhC---------CCEE
Confidence 4788999999999999999886654322212232211 1211223333444444 3356678875 5789
Q ss_pred EcCCC---ccHHHHHHHcCCc--eEEEEEcCC
Q 025329 214 ATGFT---YLGPKFMKDNGLK--HVVFSTADG 240 (254)
Q Consensus 214 ATkYP---nLarkyf~~~Gi~--~veIi~l~G 240 (254)
++... .+.+.++++.|++ +++++.+..
T Consensus 115 g~~~~~~~~~l~~~L~~~Gl~~~dv~~v~~~~ 146 (342)
T 4esw_A 115 GYVGEFGKIQVDELTKHYGMTPDDYVAVRCGM 146 (342)
T ss_dssp EESSSHHHHHHHHHHGGGTCCGGGSEEEECGG
T ss_pred EecCCchHHHHHHHHHHcCCChhheEEecCCH
Confidence 87543 2557788889983 467776543
No 16
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=93.97 E-value=0.11 Score=44.25 Aligned_cols=95 Identities=18% Similarity=0.199 Sum_probs=65.0
Q ss_pred eEEEeecCcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCccccccchHHhhcCCccc
Q 025329 127 LEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWT 206 (254)
Q Consensus 127 iev~~vRp~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~ 206 (254)
+++......++-..+..|.+|+++.+..+-.|.... +.. --.+..-..++.++.+. ++++++||+
T Consensus 99 v~~~~~~~~~~~~~l~~G~~D~~~~~~~~~~~r~~~----~~~--~~p~~~~~~~l~~~~~~---~i~sl~dL~------ 163 (291)
T 2yjp_A 99 VEFVLTEAANRVEYVRSGKVDLILANFTQTPERAEA----VDF--ADPYMKVALGVVSPKNK---PITDMAQLK------ 163 (291)
T ss_dssp EEEEECCGGGHHHHHHTTSCSEECSSCBCCHHHHTT----EEE--CCCCEEECEEEEEETTS---CCCSGGGGT------
T ss_pred EEEEEccHHHHHHHHhCCCeeEEEeCCCCChHHHcc----cee--ccCeeecceEEEEeCCC---CCCCHHHhC------
Confidence 445555567889999999999999876654444322 211 13456667788888883 688899985
Q ss_pred CCCCcEEEcCCCccHHHHHHHcCCceEEEEEcCC
Q 025329 207 AEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADG 240 (254)
Q Consensus 207 ~~r~lRVATkYPnLarkyf~~~Gi~~veIi~l~G 240 (254)
++|||+---.....++++..- .++++....
T Consensus 164 ---gk~v~~~~g~~~~~~l~~~~~-~~~~~~~~~ 193 (291)
T 2yjp_A 164 ---DQTLLVNKGTTADAFFTKSHP-EVKLLKFDQ 193 (291)
T ss_dssp ---TSEEEEETTSHHHHHHHHHCT-TSEEEEESS
T ss_pred ---CCEEEEecCCcHHHHHHHhCC-CceEEEeCC
Confidence 478998777777788887643 256665543
No 17
>4ef1_A Pheromone COB1/lipoprotein, YAEC family; periplasmic methionine binding protein, NLPA lipoprotein, ST genomics; 1.90A {Enterococcus faecalis} PDB: 4ef2_A*
Probab=93.93 E-value=0.11 Score=46.29 Aligned_cols=101 Identities=11% Similarity=0.035 Sum_probs=70.7
Q ss_pred eEEEecCCCCChHHHHHHHHhCCC-ccCCCC-----CCceEeecCCCCCeEE-EeecCcchhhhhhcCceeeeeecccee
Q 025329 84 IRLGLPSKGRMAADTLDLLKDCQL-SVKQVN-----PRQYVAQIPQLSNLEV-WFQRPKDIVRKLLSGDLDLGIVGLDTV 156 (254)
Q Consensus 84 LrIALPsKGRL~e~tl~LL~~aGi-~v~~~~-----~R~L~~~~~~~p~iev-~~vRp~DIp~yV~~G~aDlGIvG~DvL 156 (254)
=+||+|+.+.-..-.+.||+++|+ +++... .-.-+...+ .+++| .-+.+..+|+-+.+|.+|+.++-.++.
T Consensus 103 a~IAIpnd~sn~~RaL~lL~~~GLI~Lk~~~~~~~~t~~DI~~Np--k~l~~~~el~aaql~~al~dg~vDaavin~n~a 180 (246)
T 4ef1_A 103 STIYVSSSVSDWPRVLTILEDAGLITLKEGVDRTTATFDDIDKNT--KKLKFNHESDPAIMTTLYDNEEGAAVLINSNFA 180 (246)
T ss_dssp CEEEEESCGGGHHHHHHHHHHTTSEEECTTCCGGGCCGGGEEEET--TCCEEEEEECGGGHHHHHHTTCSSEEEECHHHH
T ss_pred CEEEeecCCchHHHHHHHHHHCCCeeecCCCCcCcCCHhHHhcCC--CccEEeeecCHHHHHHHhccccccEEEEechHH
Confidence 479999888777889999999998 333311 111223322 36899 999999999999999999999999999
Q ss_pred ecccCCCc-ceeeecCCCCcccEEEEEEEeCC
Q 025329 157 SEFGQGNE-DLIIVHDALDYGDCRLSLAIPKY 187 (254)
Q Consensus 157 ~E~~~d~~-~l~~~l~dLgfG~CRLvVAvP~~ 187 (254)
.+.|.+.. +.+ .+++-.--.+.+.++-.++
T Consensus 181 ~~agl~p~~dal-~~E~~~~~y~n~i~vr~~~ 211 (246)
T 4ef1_A 181 VDQGLNPKKDAI-ALEKESSPYANIIAVRKED 211 (246)
T ss_dssp HHTTCCHHHHCS-EECSCCGGGCEEEEEEGGG
T ss_pred HHcCCCCccCce-EEcCCCCCeEEEEEEeccc
Confidence 99988752 322 1334444556555444443
No 18
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=93.41 E-value=0.34 Score=39.09 Aligned_cols=96 Identities=11% Similarity=0.035 Sum_probs=64.8
Q ss_pred EEeecCcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCccccccchHHhhcCCcccCC
Q 025329 129 VWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAE 208 (254)
Q Consensus 129 v~~vRp~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~~~ 208 (254)
+..+...+.-..+..|.+|+++.+.-.-.|.... +.. --.|.....++.++.+. .+++++||+
T Consensus 47 ~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~----~~f--s~p~~~~~~~~~~~~~~---~~~~~~dL~-------- 109 (237)
T 3kzg_A 47 FEAYIFDDLFPALKNREVDLVIASMIITDERKKH----FIF--SLPYMESNSQYITTVDS---KISTFDDLH-------- 109 (237)
T ss_dssp EEEECGGGHHHHHHTTSSSEECSSCBCCTTGGGT----CEE--CCCSBCCEEEEEEETTC---SCCSGGGGT--------
T ss_pred EEEcCHHHHHHHHhCCCCCEEEEccccChhHhcc----cee--eeeeeecceEEEEECCC---CCCCHHHhC--------
Confidence 3334457888999999999998876554444321 111 12677788899999884 378888886
Q ss_pred CCcEEEcCCCccHHHHHHHcCCceEEEEEcCCcee
Q 025329 209 KPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALE 243 (254)
Q Consensus 209 r~lRVATkYPnLarkyf~~~Gi~~veIi~l~GSvE 243 (254)
++|||+---.....++.+..-+ ++++.....-|
T Consensus 110 -g~~i~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~ 142 (237)
T 3kzg_A 110 -GKKIGVRKGTPYARQVLSENRN-NQVIFYELIQD 142 (237)
T ss_dssp -TCEEEEETTSTHHHHHHHTCSS-CEEEEESSHHH
T ss_pred -CCEEEEecCCHHHHHHHHhCCC-CcEEEeCCHHH
Confidence 4789988777767777776432 56665554333
No 19
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=93.36 E-value=0.11 Score=45.30 Aligned_cols=91 Identities=18% Similarity=0.163 Sum_probs=55.8
Q ss_pred CcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCccccccchHHhhcCCcccCCCCcEE
Q 025329 134 PKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRV 213 (254)
Q Consensus 134 p~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~~~r~lRV 213 (254)
..++...|..|.+|+|++|....+.......++..+. ......-...+.++++ .+|++++||+ ++||
T Consensus 68 ~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v~-~~~~~~~~~~lvv~~~---s~I~s~~DLk---------Gk~i 134 (324)
T 3ksx_A 68 GPQLLEALNVGSIDLGGAGDIPPLFAQAAGADLLYVG-WVPPTPKAETILVPSK---SALRTVADLK---------GKRI 134 (324)
T ss_dssp HHHHHHHHHTTSCSEEEEESHHHHHHHHTTCCEEEEE-EECCCGGGEEEEEETT---CSCCSGGGGT---------TCEE
T ss_pred HHHHHHHHHCCCCCEEeecCHHHHHHHhcCCCEEEEE-EecCCCCceEEEEeCC---CCCCCHHHhC---------CCEE
Confidence 4578899999999999998654332111111222111 2222221245566776 4688999986 4688
Q ss_pred EcCCCc-----cHHHHHHHcCCc--eEEEEEc
Q 025329 214 ATGFTY-----LGPKFMKDNGLK--HVVFSTA 238 (254)
Q Consensus 214 ATkYPn-----Larkyf~~~Gi~--~veIi~l 238 (254)
|+. +. +..+++++.|++ +++++.+
T Consensus 135 ~v~-~gs~~~~~~~~~l~~~Gl~~~~v~~v~~ 165 (324)
T 3ksx_A 135 AFQ-KGSSAHNLLLRVLAKSGLSMRDITPLYL 165 (324)
T ss_dssp EEC-TTSHHHHHHHHHHHHTTCCGGGSEEEEC
T ss_pred Eec-CCChHHHHHHHHHHHcCCCHHHeEEEeC
Confidence 876 33 456788899983 4677765
No 20
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=93.35 E-value=0.12 Score=45.53 Aligned_cols=88 Identities=19% Similarity=0.201 Sum_probs=56.6
Q ss_pred cchhhhhhcCceeeeeeccceee---cccCCCcceeeecCCCCcccEEEEEEEeCCCccccccchHHhhcCCcccCCCCc
Q 025329 135 KDIVRKLLSGDLDLGIVGLDTVS---EFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPL 211 (254)
Q Consensus 135 ~DIp~yV~~G~aDlGIvG~DvL~---E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~~~r~l 211 (254)
.++...|..|.+|++++|....+ +.+.+ +..+ ...+......+.++++ .+|++++||+ ++
T Consensus 58 ~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~---~~~v--~~~~~~~~~~lvv~~~---s~i~s~~DLk---------Gk 120 (348)
T 3uif_A 58 PVINEGFASGKIDFGIYGDLPPIILNASKPT---VQLV--APWGTTSNSYLVVPKN---STAKSIKDLK---------GK 120 (348)
T ss_dssp HHHHHHHHTTCCCEEEEESHHHHHHHHHSCC---EEEE--EECCCCCCCEEEEETT---CCCCSGGGGT---------TS
T ss_pred HHHHHHHHcCCCCEEecCcHHHHHHHhCCCC---EEEE--EeccCCCceEEEEECC---CCCCCHHHcC---------CC
Confidence 34778899999999998876543 33333 2211 1123334456777777 4688999986 46
Q ss_pred EEEcCCC----ccHHHHHHHcCCc--eEEEEEcC
Q 025329 212 RVATGFT----YLGPKFMKDNGLK--HVVFSTAD 239 (254)
Q Consensus 212 RVATkYP----nLarkyf~~~Gi~--~veIi~l~ 239 (254)
|||+..- .+.++++++.|++ +++++.+.
T Consensus 121 ~I~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~~ 154 (348)
T 3uif_A 121 KIALHRGRPWELAFSNLLQSEGLTFKDFKIVNVN 154 (348)
T ss_dssp EEEECTTSTHHHHHHHHHHHTTCCGGGSEEECCC
T ss_pred EEEecCCChHHHHHHHHHHHcCCCHHHeEEEECC
Confidence 8887522 2347888899973 36777653
No 21
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=93.30 E-value=0.055 Score=47.67 Aligned_cols=91 Identities=16% Similarity=0.133 Sum_probs=58.4
Q ss_pred CcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCccccccchHHh-hcCCcccCCCCcE
Q 025329 134 PKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLREL-AQMPQWTAEKPLR 212 (254)
Q Consensus 134 p~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL-~~~~~~~~~r~lR 212 (254)
..++-..+..|.+|++++|.....+......++..+. ..+ .-...+.++++ .+|++++|| + ++|
T Consensus 92 ~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v~--~~~-~~~~~ivv~~~---s~I~s~~DL~k---------Gk~ 156 (341)
T 3un6_A 92 WPDLMDALNSGRIDGASTLIELAMKSKQKGSNIKAVA--LGH-HEGNVIMGQKG---MHLNEFNNNGD---------DYH 156 (341)
T ss_dssp HHHHHHHHHTTSSSEEEEEHHHHHHHHHTTCCCEEEE--ESC-EECEEEEESTT---CCGGGCCSSSS---------CEE
T ss_pred HHHHHHHHHcCCCCEEecchHHHHHHHHCCCCeEEEe--ecC-CCceEEEEcCC---CCCCCHHHhCC---------CCE
Confidence 4678889999999999999887654211111222111 111 22345667776 457888887 4 589
Q ss_pred EEcCCCc-----cHHHHHHHcCCc--eEEEEEcC
Q 025329 213 VATGFTY-----LGPKFMKDNGLK--HVVFSTAD 239 (254)
Q Consensus 213 VATkYPn-----Larkyf~~~Gi~--~veIi~l~ 239 (254)
||+..+. +.+.++++.|++ +++++.+.
T Consensus 157 i~v~~~~s~~~~~~~~~l~~~Gl~~~dv~~~~~~ 190 (341)
T 3un6_A 157 FGIPHRYSTHYLLLEELRKQLKIKPGHFSYHEMS 190 (341)
T ss_dssp EEESCSSSHHHHHHHHHHHHTTCCTTSEEEEECC
T ss_pred EEECCCCCHHHHHHHHHHHHcCCCHHHeEEEEcC
Confidence 9977643 345588889983 58888773
No 22
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=92.39 E-value=0.42 Score=39.00 Aligned_cols=94 Identities=14% Similarity=0.121 Sum_probs=64.2
Q ss_pred EEeecCcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCccccccchHHhhcCCcccCC
Q 025329 129 VWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAE 208 (254)
Q Consensus 129 v~~vRp~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~~~ 208 (254)
+..+...++-..+..|.+|+++.+...-.|.... +.. --.|.....++.++.+. ..+++++||+
T Consensus 66 ~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~----~~~--s~p~~~~~~~~~~~~~~--~~i~~~~dL~-------- 129 (249)
T 4f3p_A 66 IQPMDFAGLIPALQTQNIDVALSGMTIKEERRKA----IDF--SDPYYDSGLAAMVQANN--TTIKSIDDLN-------- 129 (249)
T ss_dssp EEEECGGGHHHHHHTTSCSEEEEEEECCHHHHTT----EEE--CSCCEEEEEEEEEETTC--CSCCSSGGGT--------
T ss_pred EEecCHHHHHHHHHCCCCCEEEeccccCHHHHcC----cce--ecceeeccEEEEEECCC--CCcCChHHhC--------
Confidence 3334457788899999999988775554444321 211 13677788888888874 3578888885
Q ss_pred CCcEEEcCCCccHHHHHHHcCCceEEEEEcCC
Q 025329 209 KPLRVATGFTYLGPKFMKDNGLKHVVFSTADG 240 (254)
Q Consensus 209 r~lRVATkYPnLarkyf~~~Gi~~veIi~l~G 240 (254)
++|||+--......|+++..- .++++....
T Consensus 130 -g~~i~v~~g~~~~~~l~~~~~-~~~~~~~~~ 159 (249)
T 4f3p_A 130 -GKVIAAKTGTATIDWIKAHLK-PKEIRQFPN 159 (249)
T ss_dssp -TSEEEEETTSHHHHHHHHHCC-CSEEEEESS
T ss_pred -CCEEEEeCCChHHHHHHhcCC-CceEEEcCC
Confidence 478999888888889988753 256665543
No 23
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=92.30 E-value=0.068 Score=45.50 Aligned_cols=86 Identities=16% Similarity=0.091 Sum_probs=59.2
Q ss_pred eEEEeecCcchhhhhhcCceeeeeeccce-eecccCCCcceeeecCCCCcccEEEEEEEeCCCccccccchHHhhcCCcc
Q 025329 127 LEVWFQRPKDIVRKLLSGDLDLGIVGLDT-VSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQW 205 (254)
Q Consensus 127 iev~~vRp~DIp~yV~~G~aDlGIvG~Dv-L~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~ 205 (254)
+++......++-..|..|.+|+++.+... -.|... .+.. -..|....+++.++.+. ++++++||+
T Consensus 98 v~~~~~~~~~~~~~l~~G~~D~~~~~~~~~t~~r~~----~~~~--~~p~~~~~~~l~~~~~~---~i~s~~dL~----- 163 (283)
T 2yln_A 98 VEFKETQWDSMMAGLKAGRFDVVANQVGLTSPERQA----TFDK--SEPYSWSGAVLVAHNDS---NIKSIADIK----- 163 (283)
T ss_dssp EEEEECCGGGHHHHHHHTSCSEECSSCCCCSHHHHH----HEEE--CSCSEEECEEEEEETTC---SCCSGGGCT-----
T ss_pred eEEEECCHHHHHHHHHCCCcCEEEecCccCChhhhc----ceEe--ccCeeeecEEEEEECCC---CCCCHHHhC-----
Confidence 33444445678889999999999987654 333321 1211 23566777888898883 478888875
Q ss_pred cCCCCcEEEcCCCccHHHHHHHcCC
Q 025329 206 TAEKPLRVATGFTYLGPKFMKDNGL 230 (254)
Q Consensus 206 ~~~r~lRVATkYPnLarkyf~~~Gi 230 (254)
++|||+---.....+|++.|+
T Consensus 164 ----G~~v~v~~g~~~~~~l~~~~~ 184 (283)
T 2yln_A 164 ----GVKTAQSLTSNYGEKAKAAGA 184 (283)
T ss_dssp ----TSEEEECTTSHHHHHHHHTTC
T ss_pred ----CCEEEEecCchHHHHHHHcCC
Confidence 478998777777888888875
No 24
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=92.27 E-value=0.34 Score=40.85 Aligned_cols=95 Identities=16% Similarity=0.182 Sum_probs=63.4
Q ss_pred eEEEeecCcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCccccccchHHhhcCCccc
Q 025329 127 LEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWT 206 (254)
Q Consensus 127 iev~~vRp~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~ 206 (254)
+++......+.-..+..|.+|+++.+...-.|.... +.. .-.|-.-..++.++.+. ++++++||+
T Consensus 88 ~~~~~~~~~~~~~~l~~G~~D~~~~~~~~~~~r~~~----~~~--s~p~~~~~~~~~~~~~~---~i~~~~dL~------ 152 (292)
T 1xt8_A 88 VQFVLVEAANRVEFLKSNKVDIILANFTQTPQRAEQ----VDF--CSPYMKVALGVAVPKDS---NITSVEDLK------ 152 (292)
T ss_dssp EEEEECCGGGHHHHHHTTSCSEECSSCBCCHHHHTT----EEE--CCCCEEEEEEEEEETTC---CCCSSGGGT------
T ss_pred EEEEEcCHHHHHHHHhCCCeeEEeecCCCCcchhcc----eee--eccceecceEEEEECCC---CCCCHHHhC------
Confidence 344444456788899999999998776554443221 211 23566777888888873 678888885
Q ss_pred CCCCcEEEcCCCccHHHHHHHcCCceEEEEEcCC
Q 025329 207 AEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADG 240 (254)
Q Consensus 207 ~~r~lRVATkYPnLarkyf~~~Gi~~veIi~l~G 240 (254)
++|||+---.....++++.+- +++++....
T Consensus 153 ---g~~i~~~~g~~~~~~l~~~~~-~~~~~~~~~ 182 (292)
T 1xt8_A 153 ---DKTLLLNKGTTADAYFTQNYP-NIKTLKYDQ 182 (292)
T ss_dssp ---TSEEEEETTSHHHHHHHHHCT-TSEEEEESS
T ss_pred ---CCEEEEeCCCcHHHHHHHhCC-CceEEEcCC
Confidence 468998766777788887643 256665544
No 25
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=92.27 E-value=0.32 Score=39.64 Aligned_cols=94 Identities=13% Similarity=0.028 Sum_probs=62.7
Q ss_pred cCcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCccccccchHHhhcCCcccCCCCcE
Q 025329 133 RPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLR 212 (254)
Q Consensus 133 Rp~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~~~r~lR 212 (254)
.-.++-..+..|.+|+.+.|.-.-.|.... +.. --.|.....++.++.+.. ..+++++||... .++|
T Consensus 60 ~~~~~~~~l~~g~~D~~~~~~~~t~~r~~~----~~~--s~p~~~~~~~~~~~~~~~-~~i~~~~dL~~~------~g~~ 126 (257)
T 2q88_A 60 EYGAMIPGLQAGRHDAITAGLFMKPERCAA----VAY--SQPILCDAEAFALKKGNP-LGLKSYKDIADN------PDAK 126 (257)
T ss_dssp CGGGHHHHHHTTSCSEECSCCBCCHHHHTT----SEE--CSCCCEECEEEEEETTCT-TCCCBHHHHHHC------TTCC
T ss_pred CHHHHHHHHHCCCcCEEEecccCCHHHHhc----ccc--ccchhcCceEEEEECCCc-cCCCCHHHHhcc------CCce
Confidence 336677889999999998775443343221 111 125667778888888742 257899998621 1368
Q ss_pred EEcCCCccHHHHHHHcCCceEEEEEcC
Q 025329 213 VATGFTYLGPKFMKDNGLKHVVFSTAD 239 (254)
Q Consensus 213 VATkYPnLarkyf~~~Gi~~veIi~l~ 239 (254)
||+---.....+|++.|+.+.+++...
T Consensus 127 i~~~~g~~~~~~l~~~~~~~~~~~~~~ 153 (257)
T 2q88_A 127 IGAPGGGTEEKLALEAGVPRDRVIVVP 153 (257)
T ss_dssp EEECTTSHHHHHHHHTTCCGGGEEECS
T ss_pred EEEECCcccHHHHHhcCCCCceEEEcC
Confidence 998887888889999887444555544
No 26
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=91.92 E-value=0.26 Score=39.18 Aligned_cols=95 Identities=13% Similarity=0.092 Sum_probs=63.7
Q ss_pred eEEEeecCcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCccccccchHHhhcCCccc
Q 025329 127 LEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWT 206 (254)
Q Consensus 127 iev~~vRp~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~ 206 (254)
+++....-.++-..+..|.+|+ +.|...-.|.... +... -.+.....++.++.+.. .+++++||+
T Consensus 52 ~~~~~~~~~~~~~~l~~g~~D~-~~~~~~~~~r~~~----~~~s--~p~~~~~~~~~~~~~~~--~~~~~~dL~------ 116 (234)
T 3h7m_A 52 VEFRLGAWSEMFSALKSGRVDV-LQGISWSEKRARQ----IDFT--PPHTIVYHAIFARRDSP--PAAGLEDLR------ 116 (234)
T ss_dssp EEEEEECGGGHHHHHHTTSSSE-EEEEECCHHHHTT----EEEE--EEEEEEEEEEEEESSSC--CCSSGGGGT------
T ss_pred eEEEeCCHHHHHHHHhCCCeeE-EEeccCCHhHHhh----cCCC--ccccccceEEEEECCCC--CCCCHHHhC------
Confidence 3344444577888999999999 5665444443221 1111 25567778888888843 478888885
Q ss_pred CCCCcEEEcCCCccHHHHHHHcCCceEEEEEcCC
Q 025329 207 AEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADG 240 (254)
Q Consensus 207 ~~r~lRVATkYPnLarkyf~~~Gi~~veIi~l~G 240 (254)
++|||+--.....+|+++.+.+ ++++....
T Consensus 117 ---g~~i~~~~g~~~~~~l~~~~~~-~~~~~~~~ 146 (234)
T 3h7m_A 117 ---GRKVALHRDGIMHEYLAERGYG-KDLVLTPT 146 (234)
T ss_dssp ---TSCEEEETTSHHHHHHHTTTCG-GGEEEESS
T ss_pred ---CCEEEEEeCchHHHHHHhcCCC-ceEEEeCC
Confidence 4689988888889999998863 55555443
No 27
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=91.59 E-value=0.79 Score=38.24 Aligned_cols=92 Identities=14% Similarity=0.113 Sum_probs=63.1
Q ss_pred EEeecCcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCccccccchHHhhcCCcccCC
Q 025329 129 VWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAE 208 (254)
Q Consensus 129 v~~vRp~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~~~ 208 (254)
+..+.-.++-..+..|.+|+.+.+...-.|.... +.. --.|.....++.++.+.. ..+++++||+
T Consensus 67 ~~~~~~~~~~~~l~~G~~D~~~~~~~~t~~r~~~----~~f--s~p~~~~~~~l~~~~~~~-~~i~~~~dL~-------- 131 (271)
T 2iee_A 67 FKEMGIDGMLTAVNSGQVDAAANDIDVTKDREEK----FAF--STPYKYSYGTAIVRKDDL-SGIKTLKDLK-------- 131 (271)
T ss_dssp EEECCSTTHHHHHHHTSSSEECSSCBCCHHHHTT----EEE--CCCSEEEEEEEEECTTTG-GGCSSGGGGT--------
T ss_pred EEECCHHHHHHHHHCCCcCEEEeCCcCChhhccc----eEE--eecceeCCeEEEEECCCC-CCCCCHHHhC--------
Confidence 3333457888999999999999875444443221 211 236777888999988742 2578888885
Q ss_pred CCcEEEcCCCccHHHHHHHcCCceEEEEEcC
Q 025329 209 KPLRVATGFTYLGPKFMKDNGLKHVVFSTAD 239 (254)
Q Consensus 209 r~lRVATkYPnLarkyf~~~Gi~~veIi~l~ 239 (254)
++|||+---.....+|++.|. +++...
T Consensus 132 -g~~i~v~~g~~~~~~l~~~~~---~~~~~~ 158 (271)
T 2iee_A 132 -GKKAAGAATTVYMEVARKYGA---KEVIYD 158 (271)
T ss_dssp -TCEEESCTTSHHHHHHHHTTC---EEEECS
T ss_pred -CCEEEEeCCccHHHHHHHcCC---ceEEeC
Confidence 479998777777889988875 444443
No 28
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=91.24 E-value=0.46 Score=37.64 Aligned_cols=88 Identities=15% Similarity=0.155 Sum_probs=57.8
Q ss_pred ecCcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccE-EEEEEEeCCCccccccchHHhhcCCcccCCCC
Q 025329 132 QRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDC-RLSLAIPKYGIFENINSLRELAQMPQWTAEKP 210 (254)
Q Consensus 132 vRp~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~C-RLvVAvP~~~~~~dv~sl~dL~~~~~~~~~r~ 210 (254)
....++-..+..|.+|+++.|...-.|.... +. . --.+..- ..++.++.+. +++++||+ +
T Consensus 52 ~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~---~~-~--s~p~~~~~~~~~~~~~~~----~~~~~dL~---------g 112 (229)
T 2y7i_A 52 QSFDSLIPSLRFKKFDAVIAGMDMTPKREQQ---VS-F--SQPYYEGLSAVVVTRKGA----YHTFADLK---------G 112 (229)
T ss_dssp CCGGGHHHHHHTTSCSEECSSCBCCHHHHTT---SE-E--CSCSBCCCCEEEEEETTS----CCSTGGGT---------T
T ss_pred cCHHHHHHHHhCCCceEEEecCccCHHHhcc---ee-e--ccccccCCcEEEEEeCCC----CCCHHHHC---------C
Confidence 3446788899999999998765544443221 11 1 1245555 6788888883 67888875 4
Q ss_pred cEEEcCCCccHHHHHHHcCCceEEEEEcC
Q 025329 211 LRVATGFTYLGPKFMKDNGLKHVVFSTAD 239 (254)
Q Consensus 211 lRVATkYPnLarkyf~~~Gi~~veIi~l~ 239 (254)
+|||+--......|+++..- .++++...
T Consensus 113 ~~v~~~~g~~~~~~l~~~~~-~~~~~~~~ 140 (229)
T 2y7i_A 113 KKVGLENGTTHQRYLQDKQQ-AITPVAYD 140 (229)
T ss_dssp CEEEEETTSHHHHHHHHHCT-TSEEEEES
T ss_pred CEEEEecCCcHHHHHHHhCC-CCeEEecC
Confidence 78998777777888887632 24555444
No 29
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=90.92 E-value=0.31 Score=40.78 Aligned_cols=97 Identities=11% Similarity=0.052 Sum_probs=59.1
Q ss_pred eEEEeecCcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCccccccchHHhhcCCccc
Q 025329 127 LEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWT 206 (254)
Q Consensus 127 iev~~vRp~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~ 206 (254)
+++......++-..+..|.+|+++.+...-.|.... +. . --.|.....++.++.+. ++++++||.
T Consensus 65 v~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~r~~~---~~-~--s~p~~~~~~~l~~~~~~---~i~sl~dL~------ 129 (287)
T 2vha_A 65 VKLIPITSQNRIPLLQNGTFDFECGSTTNNVERQKQ---AA-F--SDTIFVVGTRLLTKKGG---DIKDFADLK------ 129 (287)
T ss_dssp EEEEECCTTTHHHHHHTTSCSEECSSCBCCHHHHTT---CE-E--EEEEEEEEEEEEEETTS---SCCSGGGGT------
T ss_pred EEEEECCHHHHHHHHHCCCeeEEeccccCCcchhhc---cc-c--cceeeecceEEEEECCC---CCCCHHHcC------
Confidence 334444456788899999999998765443443221 11 1 12456777888888883 578888885
Q ss_pred CCCCcEEEcCCCccHHHHH----HHcCCceEEEEEcCCce
Q 025329 207 AEKPLRVATGFTYLGPKFM----KDNGLKHVVFSTADGAL 242 (254)
Q Consensus 207 ~~r~lRVATkYPnLarkyf----~~~Gi~~veIi~l~GSv 242 (254)
++|||+---.....++ .+.|.+ ++++...+.-
T Consensus 130 ---g~~v~~~~g~~~~~~l~~~~~~~~~~-~~~~~~~~~~ 165 (287)
T 2vha_A 130 ---GKAVVVTSGTTSEVLLNKLNEEQKMN-MRIISAKDHG 165 (287)
T ss_dssp ---TCEEEEETTSHHHHHHHHHHHHTTCC-CEEEEESSHH
T ss_pred ---CCEEEEeCCCcHHHHHHHHhhccCCC-ceEEEcCCHH
Confidence 3678865444444444 444553 6666655443
No 30
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=90.00 E-value=0.21 Score=41.58 Aligned_cols=83 Identities=14% Similarity=0.123 Sum_probs=55.0
Q ss_pred EEEeecCcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCccccccchHHhhcCCcccC
Q 025329 128 EVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTA 207 (254)
Q Consensus 128 ev~~vRp~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~~ 207 (254)
++......++-..+..|.+|+++.|...-.|.... +.. --.+..-..++.++.+. .+++++||+
T Consensus 83 ~~~~~~~~~~~~~l~~G~~D~~~~~~~~~~~r~~~----~~~--s~p~~~~~~~l~~~~~~---~i~~~~dL~------- 146 (272)
T 2pvu_A 83 ELKNIGWDPLFASLQSKEVDMGISGITITDERKQS----YDF--SDPYFEATQVILVKQGS---PVKNALDLK------- 146 (272)
T ss_dssp EEEECCHHHHHHHHHHTSSSEECSSCBCCHHHHTT----EEE--CSCCEEECEEEEEETTC---CCCSGGGGT-------
T ss_pred EEEECCHHHHHHHHhCCCCCEEEeCCcCCHHHHhc----Ccc--chhhhccceEEEEECCC---CCCCHHHhC-------
Confidence 34444457788899999999999875443343221 111 12556667788888884 377888885
Q ss_pred CCCcEEEcCCCccHHHHHHHc
Q 025329 208 EKPLRVATGFTYLGPKFMKDN 228 (254)
Q Consensus 208 ~r~lRVATkYPnLarkyf~~~ 228 (254)
++|||+--......++++.
T Consensus 147 --g~~i~~~~g~~~~~~l~~~ 165 (272)
T 2pvu_A 147 --GKTIGVQNATTGQEAAEKL 165 (272)
T ss_dssp --TSCEEEETTSHHHHHHHHH
T ss_pred --CCeEEEEcCchHHHHHHHh
Confidence 3678877666667777775
No 31
>4got_A Methionine-binding lipoprotein METQ; NLPA lipoprotein, PF03180 family, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.95A {Bacillus subtilis subsp}
Probab=89.38 E-value=1.2 Score=39.74 Aligned_cols=101 Identities=13% Similarity=0.072 Sum_probs=70.7
Q ss_pred eEEEecCCCCChHHHHHHHHhCCC-ccCCCCC-----CceEeecCCCCCeEEEeecCcchhhhhhcCceeeeeeccceee
Q 025329 84 IRLGLPSKGRMAADTLDLLKDCQL-SVKQVNP-----RQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVS 157 (254)
Q Consensus 84 LrIALPsKGRL~e~tl~LL~~aGi-~v~~~~~-----R~L~~~~~~~p~iev~~vRp~DIp~yV~~G~aDlGIvG~DvL~ 157 (254)
=+||||++-.-..-.+.||+++|+ +++.... -.-+... -.+++|.-+-+.-+|+.+.++.+|+.++-.+...
T Consensus 106 a~IaIPnDptN~~RaL~lL~~aGLIkLk~~~~~~~~t~~DI~~N--pk~l~~~e~~aaql~r~l~d~~vD~avin~n~a~ 183 (249)
T 4got_A 106 ATIILTNNVAEQGRMLAMLENAGLITLDSKVETVDATLKDIKKN--PKNLEFKKVAPELTAKAYENKEGDAVFINVNYAI 183 (249)
T ss_dssp CEEEEECCGGGHHHHHHHHHHTTSCEECTTSCGGGCCGGGEEEC--TTCCEEEEECTTTHHHHHHTTCSSEEEECHHHHH
T ss_pred CEEEEecCccchHHHHHHHHHCCCEEECCCCCccccCcchhhhC--CccccceecCHhHhhhhcccccccEEEechhHHH
Confidence 589999999889999999999998 3332110 1223332 2468999999999999999999999999999999
Q ss_pred cccCCC-cceeeecCCCCcccEEEEEEEeCC
Q 025329 158 EFGQGN-EDLIIVHDALDYGDCRLSLAIPKY 187 (254)
Q Consensus 158 E~~~d~-~~l~~~l~dLgfG~CRLvVAvP~~ 187 (254)
+.+.+. .+.+ .+++..-...--++|+.++
T Consensus 184 ~agl~p~~dal-~~E~~~~~py~Nvivvr~~ 213 (249)
T 4got_A 184 QNKLNPKKDAI-EVESTKNNPYANIIAVRKG 213 (249)
T ss_dssp HTTCCHHHHCS-EECCSTTCCCCEEEEEETT
T ss_pred HcCCChhhhhh-cccCCCCCceEEEEEEccc
Confidence 998764 2322 2233322222335666655
No 32
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=89.04 E-value=0.47 Score=37.34 Aligned_cols=116 Identities=13% Similarity=0.019 Sum_probs=71.6
Q ss_pred CCCChHHHHHHHHhCCCccCCCCCCceEeecCCCCCeEEEeecCcchhhhhhcCceeeeeeccceeecccCCCcceeeec
Q 025329 91 KGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVH 170 (254)
Q Consensus 91 KGRL~e~tl~LL~~aGi~v~~~~~R~L~~~~~~~p~iev~~vRp~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l 170 (254)
+|-..+=...++++.|+++ ++......++-..+..|.+|+.+.+...-.|.... +..
T Consensus 25 ~G~~~dl~~~i~~~~g~~~------------------~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~----~~~- 81 (227)
T 3tql_A 25 EGFGADIVKAVCKQMQAVC------------------TISNQPWDSLIPSLKLGKFDALFGGMNITTARQKE----VDF- 81 (227)
T ss_dssp ESHHHHHHHHHHHHTTCEE------------------EEEECCHHHHHHHHHHTSCSEECSSCBCCTTGGGT----EEE-
T ss_pred ccchHHHHHHHHHHhCCeE------------------EEEeCCHHHHHHHHhCCCCCEEEecCcCCHhHHhh----eec-
Confidence 3544455555666666543 22223346777889999999998776544443321 211
Q ss_pred CCCCcccEEEEEEEeCCCccccccchHHhhcCCcccCCCCcEEEcCCCccHHHHHHHcCCceEEEEEcCCc
Q 025329 171 DALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGA 241 (254)
Q Consensus 171 ~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~~~r~lRVATkYPnLarkyf~~~Gi~~veIi~l~GS 241 (254)
--.+.....++.++.+... .++++||. ++|||+--......++++.+-+.++++.....
T Consensus 82 -s~p~~~~~~~l~~~~~~~~--~~~~~dL~---------g~~v~~~~g~~~~~~l~~~~~~~~~~~~~~~~ 140 (227)
T 3tql_A 82 -TDPYYTNSVSFIADKNTPL--TLSKQGLK---------GKIIGVQGGTTFDSYLQDSFGNSITIQRYPSE 140 (227)
T ss_dssp -CSCSBCCEEEEEEETTSCC--CCSTTTTT---------TCEEEEETTSHHHHHHHHHHGGGSEEEEESSH
T ss_pred -ccceeccceEEEEeCCCCC--CCCHHHhC---------CCEEEEEecccHHHHHHHhccccceEEEcCCH
Confidence 1356667788888888432 26777774 47899888788888888765321455554443
No 33
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=88.81 E-value=0.51 Score=38.95 Aligned_cols=83 Identities=17% Similarity=0.022 Sum_probs=58.3
Q ss_pred EEeecCcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCccccccchHHhhcCCcccCC
Q 025329 129 VWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAE 208 (254)
Q Consensus 129 v~~vRp~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~~~ 208 (254)
+..+.-.+.-..+..|.+|+++.|...-.|.... +.. --.|..-..++.++.+. .+++++||+
T Consensus 64 ~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~r~~~----~~f--s~p~~~~~~~~~~~~~~---~i~~~~dL~-------- 126 (268)
T 3hv1_A 64 WQAIDWDMKETELKNGTIDLIWNGYSVTDERKQS----ADF--TEPYMVNEQVLVTKKSS---GIDSVAGMA-------- 126 (268)
T ss_dssp EEECCGGGHHHHHHHTSCSEECSSCBCCHHHHTT----CEE--CCCCEEECEEEEEEGGG---CCCSSGGGT--------
T ss_pred EEECCHHHHHHHHHCCCCCEEEecCccCHHHHhc----CcC--cHHHeeCceEEEEECCC---CCCCHHHhC--------
Confidence 3334457788899999999998776655554322 111 12566777888888883 678888885
Q ss_pred CCcEEEcCCCccHHHHHHHcC
Q 025329 209 KPLRVATGFTYLGPKFMKDNG 229 (254)
Q Consensus 209 r~lRVATkYPnLarkyf~~~G 229 (254)
++|||+--......+|.+.+
T Consensus 127 -g~~i~v~~g~~~~~~l~~~~ 146 (268)
T 3hv1_A 127 -GKTLGAQAGSSGYDAFNASP 146 (268)
T ss_dssp -TCCEEEETTCHHHHHHHHCT
T ss_pred -CCEEEEEeCCchHHHHHHhh
Confidence 47899888888888887665
No 34
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=88.81 E-value=0.37 Score=42.02 Aligned_cols=93 Identities=14% Similarity=0.149 Sum_probs=53.5
Q ss_pred chhhhhhcCceeeeeeccceeecc-cCCCcceeeecCCCCcccEEEEEEEeCCCccccccchHHhhcCCcccCCCCcEEE
Q 025329 136 DIVRKLLSGDLDLGIVGLDTVSEF-GQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVA 214 (254)
Q Consensus 136 DIp~yV~~G~aDlGIvG~DvL~E~-~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~~~r~lRVA 214 (254)
++...|..|.+|+|+++.+.+... .....++. .+..+.-+.....+.++.+. .+|++++|| +|||
T Consensus 57 ~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~-~v~~~~~~~~~~~i~v~~ds--~~i~s~~DL-----------K~i~ 122 (321)
T 2x7q_A 57 RLINLLNSNEVDIAIGLTEAFIADIAKGNENIH-VLDTYVKSPLLWAVSTGSNR--DDVTDAKQL-----------KRIG 122 (321)
T ss_dssp HHHHHHHTTSCSEEEEEHHHHHHHHHTTCTTEE-EEEEEECSCCEEEEEEESSC--TTCSSGGGC-----------CEEE
T ss_pred HHHHHHHcCCccEEecCcHHHHHHHHCCCCcEE-EEEEecCCCcceEEEECCCC--CCCCChHHc-----------ceEE
Confidence 378899999999999998744432 12211122 11112222223456677762 267888886 2788
Q ss_pred cCCCcc----HHHHH-HHcCCc-eEEEEEcCCce
Q 025329 215 TGFTYL----GPKFM-KDNGLK-HVVFSTADGAL 242 (254)
Q Consensus 215 TkYPnL----arkyf-~~~Gi~-~veIi~l~GSv 242 (254)
+.-+.. ..+++ ++.|++ +++++.+.+.-
T Consensus 123 ~~~~gs~~~~~~~~l~~~~Gl~~dv~~v~~~~~~ 156 (321)
T 2x7q_A 123 VSRIGSGSYVMSFVLAHQLGVPSFDQFQVLSNFK 156 (321)
T ss_dssp ESSTTSHHHHHHHHHHHHHTSCCCCEEEECCSHH
T ss_pred eeCCCcHHHHHHHHHHHhcCCCcceEEEEcCChH
Confidence 765333 33344 567885 26888775543
No 35
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=88.68 E-value=0.73 Score=35.94 Aligned_cols=119 Identities=12% Similarity=0.074 Sum_probs=69.7
Q ss_pred CCCCceEEEecCCCCChHHHHHHHHhCCCccCCCCCCceEeecCCCCCe--EEEeecCcchhhhhhcCceeeeeecccee
Q 025329 79 SERDEIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNL--EVWFQRPKDIVRKLLSGDLDLGIVGLDTV 156 (254)
Q Consensus 79 ~~~~~LrIALPsKGRL~e~tl~LL~~aGi~v~~~~~R~L~~~~~~~p~i--ev~~vRp~DIp~yV~~G~aDlGIvG~DvL 156 (254)
...+.||||.+ -.-...-..+++.+ +. . ..|++ ++......++...|.+|.+|+||+....-
T Consensus 5 ~~~g~l~Ig~~-~~~~~~~l~~~l~~--f~----------~---~~P~i~i~i~~~~~~~~~~~l~~g~~Di~i~~~~~~ 68 (222)
T 4ab5_A 5 GEAGELRIAVE-CHTCFDWLMPAMGE--FR----------P---MWPQVELDIVSGFQADPVGLLLQHRADLAIVSEAEK 68 (222)
T ss_dssp CTTEEEEEECC-CTTTHHHHHHHHHH--HH----------H---HSTTEEEEEECCCCSCTHHHHHTTSCSEEEESCCCC
T ss_pred CccceEEEEEe-hHHHHHHHHHHHHH--HH----------H---HCCCcEEEEecCCHHHHHHHHHcCCcCEEEecCCCC
Confidence 34567999998 34443333444444 10 0 01334 34444568999999999999999965421
Q ss_pred ecccCCCcceeeecCCCCcccEEEEEEEeCCCccc--cccchHHhhcCCcccCCCCcEEE----cCCCccHHHHHHHcCC
Q 025329 157 SEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFE--NINSLRELAQMPQWTAEKPLRVA----TGFTYLGPKFMKDNGL 230 (254)
Q Consensus 157 ~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~--dv~sl~dL~~~~~~~~~r~lRVA----TkYPnLarkyf~~~Gi 230 (254)
..++. -..++..+++++++.+.++. ..-+++||.+.+ -|. +.+.....++|++.|+
T Consensus 69 ------~~~~~----~~~l~~~~~~~v~~~~~pl~~~~~i~~~dL~~~~--------~i~~~~~~~~~~~~~~~~~~~~~ 130 (222)
T 4ab5_A 69 ------QNGIS----FQPLFAYEMVGICAPDHPLAAKNVWTAEDFIGET--------LITYPVPDEMLDLPKKILIPKNI 130 (222)
T ss_dssp ------CTTEE----EEEEEEEEEEEEECTTSGGGGCSEECGGGGSSSC--------EEECSSCGGGCHHHHHTTGGGTC
T ss_pred ------cCCeE----EEEeecCcEEEEecCCChhhccCCcCHHHHcCCC--------EEecCCCcHHHHHHHHHHHHcCC
Confidence 11222 23567889999999884322 222567775421 121 2344556677777787
Q ss_pred c
Q 025329 231 K 231 (254)
Q Consensus 231 ~ 231 (254)
+
T Consensus 131 ~ 131 (222)
T 4ab5_A 131 N 131 (222)
T ss_dssp C
T ss_pred C
Confidence 4
No 36
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=88.29 E-value=0.59 Score=36.87 Aligned_cols=121 Identities=16% Similarity=0.196 Sum_probs=68.3
Q ss_pred CCCCceEEEecCCCCChHH-HHHHHHhCCCccCCCCCCceEeecCCCCCeEEEe--ecCcchhhhhhcCceeeeeeccce
Q 025329 79 SERDEIRLGLPSKGRMAAD-TLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWF--QRPKDIVRKLLSGDLDLGIVGLDT 155 (254)
Q Consensus 79 ~~~~~LrIALPsKGRL~e~-tl~LL~~aGi~v~~~~~R~L~~~~~~~p~iev~~--vRp~DIp~yV~~G~aDlGIvG~Dv 155 (254)
...+.||||.+ ..+... ..+++.+ + .. ..|++++.+ ....++...+.+|.+|+||+....
T Consensus 8 ~~~g~l~Ig~~--~~~~~~~l~~~l~~--~----------~~---~~P~v~i~~~~~~~~~~~~~l~~g~~Dl~i~~~~~ 70 (232)
T 3ho7_A 8 SLTGRLNIAVL--PTIAPYLLPRVFPI--W----------KK---ELAGLEIHVSEMQTSRCLASLLSGEIDMAIIASKA 70 (232)
T ss_dssp --CEEEEEEEC--TTTHHHHHHHHHHH--H----------HH---HSTTEEEEEEECCHHHHHHHHHHTSCSEEEESSCC
T ss_pred ccceeEEEEec--cccchhhhHHHHHH--H----------HH---HCCCcEEEEEeCCHHHHHHHHHcCCCCEEEEcCCC
Confidence 34567999998 333332 2233333 1 00 124444444 467889999999999999998643
Q ss_pred eecccCCCcceeeecCCCCcccEEEEEEEeCCCcc--ccccchHHhhcCCcccCCCCcEEEcCCCccHHHHHHHcCC
Q 025329 156 VSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIF--ENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGL 230 (254)
Q Consensus 156 L~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~--~dv~sl~dL~~~~~~~~~r~lRVATkYPnLarkyf~~~Gi 230 (254)
-. .++. -..++..+++++++.+.++ ...-+++||.+.+-..... .+.+.....++|++.|+
T Consensus 71 ~~------~~l~----~~~l~~~~~~~v~~~~hpl~~~~~~~~~dL~~~~~i~~~~----~~~~~~~~~~~~~~~~~ 133 (232)
T 3ho7_A 71 ET------EGLE----DDLLYYEEFLGYVSRCEPLFEQDVIRTTEVNPHRLWLLDE----GHCFRDQLVRFCQMKGL 133 (232)
T ss_dssp CC------TTEE----EEEEEEEEEEEEECTTSGGGGSSSBCGGGCCGGGBCCCTT----TTTTTSTTHHHHTCTTT
T ss_pred CC------CCeE----EEEecccCEEEEEcCCCccccCCCcCHHHhcCCCEEEecC----CCcHHHHHHHHHHHcCC
Confidence 21 1222 2356788999999888432 1233567775322111000 02344567778887776
No 37
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=88.22 E-value=1.9 Score=34.46 Aligned_cols=97 Identities=11% Similarity=0.055 Sum_probs=64.6
Q ss_pred EEeecCcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCccccccchHHhhcCCcccCC
Q 025329 129 VWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAE 208 (254)
Q Consensus 129 v~~vRp~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~~~ 208 (254)
+..+.-.++-..+..|.+|+.+.|...-.|.... +.. --.|.....++.++.+.. ..+++++||.+
T Consensus 58 ~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~r~~~----~~f--s~p~~~~~~~~~~~~~~~-~~i~~~~dL~~------- 123 (239)
T 3kbr_A 58 VVPTSWPNLMRDFADDRFDIAMSGISINLERQRQ----AYF--SIPYLRDGKTPITLCSEE-ARFQTLEQIDQ------- 123 (239)
T ss_dssp EEECCTTTHHHHHHTTCCSEECSSCBCCHHHHTT----CEE--CSCSEEECEEEEEEGGGG-GGGSSHHHHSS-------
T ss_pred EEEeCHHHHHHHHHCCCcCEEEeCCcCCHHHcCc----ccc--chHHhccCcEEEEECCcc-cccCCHHHhcC-------
Confidence 3334457788899999999998876655554322 111 136677777888877632 36788999862
Q ss_pred CCcEEEcCCCccHHHHHHHcCCceEEEEEcCC
Q 025329 209 KPLRVATGFTYLGPKFMKDNGLKHVVFSTADG 240 (254)
Q Consensus 209 r~lRVATkYPnLarkyf~~~Gi~~veIi~l~G 240 (254)
+++|||+---.....++++..- .++++....
T Consensus 124 ~g~~v~~~~g~~~~~~l~~~~~-~~~~~~~~~ 154 (239)
T 3kbr_A 124 PGVTAIVNPGGTNEKFARANLK-KARILVHPD 154 (239)
T ss_dssp TTCEEEECTTSHHHHHHHHHCS-SSEEEECCC
T ss_pred CCcEEEEcCCCcHHHHHHHhCC-CCceEEeCC
Confidence 2579998877778888887533 356665543
No 38
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=88.12 E-value=0.56 Score=38.15 Aligned_cols=91 Identities=18% Similarity=0.199 Sum_probs=59.5
Q ss_pred cCcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCccccccchHHhhcCCcccCCCCcE
Q 025329 133 RPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLR 212 (254)
Q Consensus 133 Rp~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~~~r~lR 212 (254)
...++-..+..|.+|+++.|...-.|.... +.. --.+..-..++.++.+.. .++++++||+ ++|
T Consensus 89 ~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~----~~~--s~p~~~~~~~~~~~~~~~-~~i~~~~dL~---------g~~ 152 (269)
T 4i62_A 89 SFDNVLASVQSGKADLAISGVSKTDERSKV----FDF--STPYYTAKNKLIVKKSDL-ATYQSVNDLA---------QKK 152 (269)
T ss_dssp CHHHHHHHHHTTSCSEECSSCBCCHHHHTT----EEE--CSCCEECCEEEEEEGGGT-TTCSSGGGGC----------CE
T ss_pred CHHHHHHHHhCCCccEEecCCcCCHhHhhc----eec--ccchhhcceEEEEECCcc-ccccCHHHhC---------CCe
Confidence 346778899999999999876655554322 111 125556666777777631 4577888885 478
Q ss_pred EEcCCCccHHHHHHHcCCceEEEEEcCC
Q 025329 213 VATGFTYLGPKFMKDNGLKHVVFSTADG 240 (254)
Q Consensus 213 VATkYPnLarkyf~~~Gi~~veIi~l~G 240 (254)
||+--......|+++..- +.+++....
T Consensus 153 i~~~~g~~~~~~l~~~~~-~~~~~~~~~ 179 (269)
T 4i62_A 153 VGAQKGSIQETMAKDLLQ-NSSLVSLPK 179 (269)
T ss_dssp EEEETTSHHHHHHHHHCT-TSEEEEESC
T ss_pred EEEecCchHHHHHHHhCC-CCcEEecCC
Confidence 998877778888887643 245655443
No 39
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=87.87 E-value=1.4 Score=37.12 Aligned_cols=90 Identities=16% Similarity=0.123 Sum_probs=55.1
Q ss_pred CCeEEEee--cCcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCccccccchHHhhcC
Q 025329 125 SNLEVWFQ--RPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQM 202 (254)
Q Consensus 125 p~iev~~v--Rp~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~ 202 (254)
|++++.+. ...++...+.+|.+|+||+....-. .. .++. -..++..+++++++.+.++..-.+++||...
T Consensus 119 P~i~i~l~~~~~~~~~~~l~~g~~Dlai~~~~~~~-~~---~~l~----~~~L~~~~~~~v~~~~hpla~~~~~~dL~~~ 190 (305)
T 3fxq_A 119 PDVTVNVRDGMYPAVSPQLRDGTLDFALTAAHKHD-ID---TDLE----AQPLYVSDVVIVGQRQHPMANATRLAELQEC 190 (305)
T ss_dssp TTCEEEEEECCTTTTHHHHHHTSSSEEEEECCGGG-SC---TTEE----EEEEEECCEEEEEETTCTTTTCCSGGGGTTS
T ss_pred CCCEEEEEECCHHHHHHHHHcCCCCEEEecCCCCC-Cc---cCee----EEEeecCcEEEEEcCCCCCCCCCCHHHHhCC
Confidence 55555544 5688999999999999998643211 01 1222 2345677888888887544444567787632
Q ss_pred CcccCCCCcEEEcC----CCccHHHHHHHcCC
Q 025329 203 PQWTAEKPLRVATG----FTYLGPKFMKDNGL 230 (254)
Q Consensus 203 ~~~~~~r~lRVATk----YPnLarkyf~~~Gi 230 (254)
+ -|... ......++|++.|+
T Consensus 191 ~--------~i~~~~~~~~~~~~~~~~~~~g~ 214 (305)
T 3fxq_A 191 R--------WAFSSAPRGPGAIIRNAFARYGL 214 (305)
T ss_dssp E--------EEEECCTTSTTHHHHHHHHHTTC
T ss_pred C--------eEeeCCCCCHHHHHHHHHHHcCC
Confidence 1 12211 12455778889897
No 40
>3tqw_A Methionine-binding protein; transport and binding proteins, transport protein; HET: MSE; 2.00A {Coxiella burnetii}
Probab=87.75 E-value=1.9 Score=38.26 Aligned_cols=98 Identities=20% Similarity=0.271 Sum_probs=65.5
Q ss_pred eEEEecCCCCChHHHHHHHHhCCC-ccCCCC----CCceEeecCCCCCeEEEeecCcchhhhhhcCceeeeeeccceeec
Q 025329 84 IRLGLPSKGRMAADTLDLLKDCQL-SVKQVN----PRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSE 158 (254)
Q Consensus 84 LrIALPsKGRL~e~tl~LL~~aGi-~v~~~~----~R~L~~~~~~~p~iev~~vRp~DIp~yV~~G~aDlGIvG~DvL~E 158 (254)
=+||+|+...-..-.+.+|+++|+ +++... .-.-+.. |-.+++|.-+.+..+|+-+ +.+|+.++-.++..+
T Consensus 103 a~Iaipnd~tn~~RaL~lL~~aGLI~Lk~~~~~~~T~~DI~~--Npk~l~~~e~~aaql~r~l--~dvD~avin~n~a~~ 178 (240)
T 3tqw_A 103 AKIAVPSDPSNEARALLLLEKAQLIQLKTHVTINATPMDIAS--NPKKLKIVELDAAQLSRSL--GDVDLAAINTNYAIP 178 (240)
T ss_dssp CEEEEECSHHHHHHHHHHHHHTTSCEECCC--CCCCGGGEEE--CTTCCEEEEECGGGGGGCT--TTCSEEEECHHHHGG
T ss_pred CEEEEecCccHHHHHHHHHHHCCCEEecCCCCCcCChhhhcc--CCCCcEEEEcCHHHHHHhc--cCccEEEEcchHHHH
Confidence 479999766667778999999998 443321 1112222 2246899999999999988 568999999999999
Q ss_pred ccCCC-cceeeecCCCCcccEEEEEEEeCC
Q 025329 159 FGQGN-EDLIIVHDALDYGDCRLSLAIPKY 187 (254)
Q Consensus 159 ~~~d~-~~l~~~l~dLgfG~CRLvVAvP~~ 187 (254)
.+.+. .+-+ .+++-.--.+.+. |+.++
T Consensus 179 agl~p~~dal-~~E~~~~~y~nvi-avr~~ 206 (240)
T 3tqw_A 179 AGLSPSRDAL-LTEGPNSPYANVV-AVRED 206 (240)
T ss_dssp GTCCTTTTCS-EECCSSSSCEEEE-EEEGG
T ss_pred cCCCcccCee-EEcCCCCCeeEEE-EEecc
Confidence 98764 2322 1234444455544 44444
No 41
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=87.53 E-value=0.48 Score=37.91 Aligned_cols=83 Identities=16% Similarity=0.042 Sum_probs=53.1
Q ss_pred EEeecCcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCccccccchHHhhcCCcccCC
Q 025329 129 VWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAE 208 (254)
Q Consensus 129 v~~vRp~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~~~ 208 (254)
+......++-..+..|.+|+++.|.-.-.|... .+.. --.+.....++.++.+.... .+++||.
T Consensus 47 ~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~r~~----~~~~--s~p~~~~~~~l~~~~~~~~~--~~~~dL~-------- 110 (239)
T 1lst_A 47 WVASDFDALIPSLKAKKIDAIISSLSITDKRQQ----EIAF--SDKLYAADSRLIAAKGSPIQ--PTLESLK-------- 110 (239)
T ss_dssp EEECCGGGHHHHHHTTSCSEECSSCBCCHHHHH----HCEE--CSCSBCCCEEEEEETTCCCC--SSHHHHT--------
T ss_pred EEeCCHHHHHHHHhCCCCCEEEECcCcCHHHhh----ceee--cccceeCceEEEEeCCCCCC--CCHHHhC--------
Confidence 333444678889999999999876544334321 1111 12566677788888884322 4889986
Q ss_pred CCcEEEcCCCccHHHHHHHc
Q 025329 209 KPLRVATGFTYLGPKFMKDN 228 (254)
Q Consensus 209 r~lRVATkYPnLarkyf~~~ 228 (254)
++|||+---.....+|++.
T Consensus 111 -g~~v~~~~g~~~~~~l~~~ 129 (239)
T 1lst_A 111 -GKHVGVLQGSTQEAYANDN 129 (239)
T ss_dssp -TCEEEEETTSHHHHHHHHH
T ss_pred -CCEEEEEcCccHHHHHHHh
Confidence 4688887666666676654
No 42
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=86.79 E-value=1 Score=39.19 Aligned_cols=76 Identities=14% Similarity=0.165 Sum_probs=54.4
Q ss_pred eEEEecCCCCChHHHHHHHHhCCC-ccCCCCC----CceEeecCCCCCeEEEeecCcchhhhhhcCceeeeeeccceeec
Q 025329 84 IRLGLPSKGRMAADTLDLLKDCQL-SVKQVNP----RQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSE 158 (254)
Q Consensus 84 LrIALPsKGRL~e~tl~LL~~aGi-~v~~~~~----R~L~~~~~~~p~iev~~vRp~DIp~yV~~G~aDlGIvG~DvL~E 158 (254)
=+||+|+...-..-.+.+|+++|+ +++.... -.-+.. +-.+++|.-+.+.++|+-+ |.+|++++-..+..+
T Consensus 102 ~~Iaip~d~sn~~ral~lL~~aGli~l~~~~~~~~t~~dI~~--np~~v~~~~l~~~~~~~al--~~VDaa~i~~~~a~~ 177 (241)
T 1xs5_A 102 AVIAIPNDSSNEARALRLLEAAGFIRMRAGSGLFATVEDVQQ--NVRNVVLQEVESALLPRVF--DQVDGAVINGNYAIM 177 (241)
T ss_dssp CEEEEECSHHHHHHHHHHHHHTTSCEECTTCCTTCCGGGEEE--CTTCCEEEEECGGGHHHHG--GGSSEEEECHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHCCCEEecCCCCCccChhhhhc--CCCceEEEEeCHHHHHHhh--hccCEEEECcHHHHH
Confidence 489999655566677889999998 3333211 111222 2246899999999999988 689999999888888
Q ss_pred ccCCC
Q 025329 159 FGQGN 163 (254)
Q Consensus 159 ~~~d~ 163 (254)
.+.+.
T Consensus 178 agl~~ 182 (241)
T 1xs5_A 178 AGLSA 182 (241)
T ss_dssp TTCCT
T ss_pred cCCCc
Confidence 77653
No 43
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=86.01 E-value=2.3 Score=38.27 Aligned_cols=25 Identities=16% Similarity=-0.136 Sum_probs=21.2
Q ss_pred cCcchhhhhhcCceeeeeeccceee
Q 025329 133 RPKDIVRKLLSGDLDLGIVGLDTVS 157 (254)
Q Consensus 133 Rp~DIp~yV~~G~aDlGIvG~DvL~ 157 (254)
...|+...|..|.+|+|+++...+.
T Consensus 79 ~~~~~~e~v~~G~id~~~~~~~~~~ 103 (361)
T 2zzv_A 79 GTFDMFDAVKTGVLDGMNPFTLYWA 103 (361)
T ss_dssp CGGGHHHHHHHTSSSEEECBGGGGT
T ss_pred CHHHHHHHHHcCceeEEEecccccc
Confidence 4589999999999999999876544
No 44
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=85.79 E-value=2.2 Score=38.41 Aligned_cols=25 Identities=4% Similarity=-0.183 Sum_probs=21.0
Q ss_pred ecCcchhhhhhcCceeeeeecccee
Q 025329 132 QRPKDIVRKLLSGDLDLGIVGLDTV 156 (254)
Q Consensus 132 vRp~DIp~yV~~G~aDlGIvG~DvL 156 (254)
....|+...|..|.+|+|+++-..+
T Consensus 77 g~~~~~~eav~~G~iD~~~~~~~~~ 101 (365)
T 2hzl_A 77 VPGLQAADAVTEGTVECCHTVGYYY 101 (365)
T ss_dssp SCGGGHHHHHHTTSSSEEEECGGGG
T ss_pred cCHHHHHHHHHcCccceeecchhhh
Confidence 4568999999999999999986543
No 45
>3gxa_A Outer membrane lipoprotein GNA1946; periplasmic, L-methionine bingding, protein binding; 2.25A {Neisseria meningitidis}
Probab=85.38 E-value=1.7 Score=39.43 Aligned_cols=97 Identities=14% Similarity=0.178 Sum_probs=66.1
Q ss_pred eEEEecCCCCChHHHHHHHHhCCC-ccCCCC-----CCceEeecCCCCCeEEEeecCcchhhhhhcCceeeeeeccceee
Q 025329 84 IRLGLPSKGRMAADTLDLLKDCQL-SVKQVN-----PRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVS 157 (254)
Q Consensus 84 LrIALPsKGRL~e~tl~LL~~aGi-~v~~~~-----~R~L~~~~~~~p~iev~~vRp~DIp~yV~~G~aDlGIvG~DvL~ 157 (254)
=+||+|++..-..-.+.||+++|| +++... .-.-+.. |-.+++|.-+.+..+|+-+. .+|+.|+-.++..
T Consensus 123 a~IAIPnDptN~~RaL~lL~~aGLIkLk~~~~~~~~T~~DI~e--Npk~lk~~eldaaql~r~l~--dvD~avIn~nya~ 198 (275)
T 3gxa_A 123 STVSAPNDPSNFARVLVMLDELGWIKLKDGINPLTASKADIAE--NLKNIKIVELEAAQLPRSRA--DVDFAVVNGNYAI 198 (275)
T ss_dssp CEEEEECSHHHHHHHHHHHHHTTSSEECTTCCGGGCCGGGEEE--CTTCCEEEEECGGGHHHHTT--TSSEEEECHHHHH
T ss_pred CEEEecCCccHHHHHHHHHHHCCCEEecCCCCCCcCCHHHHhc--CCCCCEEEEeCHHHHhhhcc--ccCEEEEchhHHH
Confidence 489999877777888999999998 443321 1112333 22468999999999999885 5899999999999
Q ss_pred cccCCCcceeeecCCCCcccEEEEEEEeCC
Q 025329 158 EFGQGNEDLIIVHDALDYGDCRLSLAIPKY 187 (254)
Q Consensus 158 E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~ 187 (254)
+.|.+..+.+. ++..--.+.+ +|+.++
T Consensus 199 ~agl~~~dal~--E~~~~~y~Nv-ivvr~~ 225 (275)
T 3gxa_A 199 SSGMKLTEALF--QEPSFAYVNW-SAVKTA 225 (275)
T ss_dssp HTTCCGGGCSE--ECCCCTTCCE-EEEEGG
T ss_pred HcCCCccccee--cCCCCCcEEE-EEEecc
Confidence 98877544332 3434344554 444443
No 46
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=85.28 E-value=0.61 Score=37.50 Aligned_cols=91 Identities=16% Similarity=0.120 Sum_probs=58.1
Q ss_pred EEeecCcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcc--cEEEEEEEeCCCccccccchHHhhcCCccc
Q 025329 129 VWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYG--DCRLSLAIPKYGIFENINSLRELAQMPQWT 206 (254)
Q Consensus 129 v~~vRp~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG--~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~ 206 (254)
+......++-..+..|.+|+++.|...-.|.... +.. -.|. ....++.++.+ ..+++++||.
T Consensus 54 ~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~----~~~---~p~~~~~~~~~~~~~~~---~~i~~~~dL~------ 117 (242)
T 3del_B 54 VREFSFDALILNLKQHRIDAVITGMSITPSRLKE----ILM---IPYYGEEIKHLVLVFKG---ENKHPLPLTQ------ 117 (242)
T ss_dssp EEECCGGGHHHHHHTTSSSEECSSBBCCHHHHTT----EEE---EEEEEEEESEEEEEEES---CCSCCCCGGG------
T ss_pred EEEcCHHHHHHHHhCCCcCEEEecCcCCHHHHhc----ccc---eeeeecCCceEEEEeCC---CCCCCHHHhC------
Confidence 3334457788899999999998765554444321 211 2344 55567777777 4577888875
Q ss_pred CCCCcEEEcCCCccHHHHHHHcCCceEEEEEcCC
Q 025329 207 AEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADG 240 (254)
Q Consensus 207 ~~r~lRVATkYPnLarkyf~~~Gi~~veIi~l~G 240 (254)
++|||+---.....++.+.. .++++....
T Consensus 118 ---g~~i~v~~g~~~~~~l~~~~--~~~~~~~~~ 146 (242)
T 3del_B 118 ---YRSVAVQTGTYQEAYLQSLS--EVHIRSFDS 146 (242)
T ss_dssp ---SSCEEEETTSHHHHHHHHST--TCCEEEESS
T ss_pred ---CCEEEEEcCcHHHHHHHhCC--CceEEEECC
Confidence 46788877777788888732 245554443
No 47
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=84.81 E-value=0.56 Score=38.11 Aligned_cols=92 Identities=13% Similarity=0.095 Sum_probs=57.7
Q ss_pred EEeecCcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcc--cEEEEEEEeCCCccccccchHHhhcCCccc
Q 025329 129 VWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYG--DCRLSLAIPKYGIFENINSLRELAQMPQWT 206 (254)
Q Consensus 129 v~~vRp~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG--~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~ 206 (254)
+......+.-..+..|.+|+++.|...-.|.... +.. -.|. ....++.++.+. .++++++||+
T Consensus 74 ~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~----~~~---~p~~~~~~~~~~~~~~~~--~~i~~~~dL~------ 138 (268)
T 3qax_A 74 VREFAFDALILNLKKHRIDAILAGMSITPSRQKE----IAL---LPYYGDEVQELMVVSKRS--LETPVLPLTQ------ 138 (268)
T ss_dssp EEECCGGGHHHHHHHTSSSEECSCCBCCHHHHTT----SEE---EEEECCCBCEEEEEEETT--SCSCCCCGGG------
T ss_pred EEecCHHHHHHHHhCCCccEEeecCccCHhHhcc----eee---ecceecccceEEEEECCC--CCCCCHHHhC------
Confidence 3333456788899999999999876655444322 111 1333 555677777762 4677888886
Q ss_pred CCCCcEEEcCCCccHHHHHHHcCCceEEEEEcCC
Q 025329 207 AEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADG 240 (254)
Q Consensus 207 ~~r~lRVATkYPnLarkyf~~~Gi~~veIi~l~G 240 (254)
++|||+---.....++.+.. +++++...+
T Consensus 139 ---g~~i~~~~g~~~~~~l~~~~--~~~~~~~~~ 167 (268)
T 3qax_A 139 ---YSSVAVQTGTYQEHYLLSQP--GICVRSFDS 167 (268)
T ss_dssp ---SSCEEEETTSHHHHHHHTST--TCCEEEESC
T ss_pred ---CCEEEEecCcHHHHHHHhCC--CceEEecCC
Confidence 36788777677777887732 245554443
No 48
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=84.72 E-value=2.8 Score=35.10 Aligned_cols=91 Identities=15% Similarity=0.128 Sum_probs=54.1
Q ss_pred CCeEEEe--ecCcchhhhhhcCceeeeeec---cceeecccCCCcceeeecCCCCcccEEEEEEEeCCCccc-cccchHH
Q 025329 125 SNLEVWF--QRPKDIVRKLLSGDLDLGIVG---LDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFE-NINSLRE 198 (254)
Q Consensus 125 p~iev~~--vRp~DIp~yV~~G~aDlGIvG---~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~-dv~sl~d 198 (254)
|++++.+ ....++...+.+|.+|+||+. .+.. ..++. -..++..+++++++++.+.. +.-+++|
T Consensus 128 P~i~i~l~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~------~~~l~----~~~l~~~~~~~v~~~~~pl~~~~i~~~d 197 (310)
T 2esn_A 128 PGVRLRLVNAERKLSVEALASGRIDFALGYDEEHERL------PEGIQ----AHDWFADRYVVVARRDHPRLAGAPTLEG 197 (310)
T ss_dssp TTCEEEEECCSSSCCHHHHHHTSSSEEEECCSTTCCC------CTTEE----EEEEEEECEEEEEESSCTTCSSSCCHHH
T ss_pred CCeEEEEEeCCcccHHHHHHcCCCCEEEecCcccccC------CcCcc----eeeeeccceEEEEeCCCCCcCCCCCHHH
Confidence 4444444 345578889999999999986 3321 12222 23466788888888874321 2346788
Q ss_pred hhcCCcccCCCCcEEE--cCCCccHHHHHHHcCCc
Q 025329 199 LAQMPQWTAEKPLRVA--TGFTYLGPKFMKDNGLK 231 (254)
Q Consensus 199 L~~~~~~~~~r~lRVA--TkYPnLarkyf~~~Gi~ 231 (254)
|.+.+- +... +.+.....+||++.|+.
T Consensus 198 L~~~~~------i~~~~~~~~~~~~~~~~~~~g~~ 226 (310)
T 2esn_A 198 YLAERH------AVVTPWNEDSGVIDRLLARSGLR 226 (310)
T ss_dssp HHTSEE------EEECTTCCSSCHHHHHHHHTTCC
T ss_pred HhcCCc------EEEeCCCCcccHHHHHHHhCCCC
Confidence 864211 1111 11235677889998884
No 49
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=84.36 E-value=1.3 Score=35.46 Aligned_cols=84 Identities=12% Similarity=0.068 Sum_probs=54.2
Q ss_pred eEEEeecCcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCccccccchHHhhcCCccc
Q 025329 127 LEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWT 206 (254)
Q Consensus 127 iev~~vRp~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~ 206 (254)
+++..+...+.-..+..|.+|+++.+...-.|... .+.. --.+.....++.++.+. .++++++||.
T Consensus 49 ~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~----~~~~--s~p~~~~~~~~~~~~~~--~~i~~~~dL~------ 114 (246)
T 4eq9_A 49 VKFEKTEWSGVFAGLDADRYNMAVNNLSYTKERAE----KYLY--AAPIAQNPNVLVVKKDD--SSIKSLDDIG------ 114 (246)
T ss_dssp EEEEECCHHHHHHHHHTTSCSEECSSCCCCHHHHH----HEEE--CCCCEECCEEEEEETTC--CSCSSGGGCT------
T ss_pred EEEEeCCHHHHHHHHhCCCcCEEecccccChhhhh----ceee--ccceecCceEEEEECCC--CCCCCHHHhC------
Confidence 34444455677888999999999877544434321 1111 23555667788888831 4678888875
Q ss_pred CCCCcEEEcCCCccHHHHHHH
Q 025329 207 AEKPLRVATGFTYLGPKFMKD 227 (254)
Q Consensus 207 ~~r~lRVATkYPnLarkyf~~ 227 (254)
++|||+---.....++.+
T Consensus 115 ---g~~i~~~~g~~~~~~l~~ 132 (246)
T 4eq9_A 115 ---GKSTEVVQATTSAKQLEA 132 (246)
T ss_dssp ---TCEEEECTTCHHHHHHHH
T ss_pred ---CCEEEEecCccHHHHHHH
Confidence 478988766666666665
No 50
>3k2d_A ABC-type metal ION transport system, periplasmic; alpha/beta domain, immune system; 2.60A {Vibrio vulnificus}
Probab=84.30 E-value=2.1 Score=37.96 Aligned_cols=97 Identities=15% Similarity=0.208 Sum_probs=66.2
Q ss_pred eEEEecCCCCChHHHHHHHHhCCC-ccCCCCC----CceEeecCCCCCeEEEeecCcchhhhhhcCceeeeeeccceeec
Q 025329 84 IRLGLPSKGRMAADTLDLLKDCQL-SVKQVNP----RQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSE 158 (254)
Q Consensus 84 LrIALPsKGRL~e~tl~LL~~aGi-~v~~~~~----R~L~~~~~~~p~iev~~vRp~DIp~yV~~G~aDlGIvG~DvL~E 158 (254)
=+||+|+...-..-.+.||+++|+ +++.... -.-+.. |-.+++|.-+.+.-+|+-+. .+|+.++-.++..+
T Consensus 106 a~IaipnD~tN~~RaL~lL~~aGLIkLk~~~~~~~t~~DI~~--Npk~lk~~e~~aaql~r~l~--dvD~avin~nya~~ 181 (237)
T 3k2d_A 106 VRIAVPNDPTNLGRSLLLLEQQGLIKLRPEVGLLATVRDIVE--NPKNITIMELDAAQLPRSLD--DVALSIINTTYASS 181 (237)
T ss_dssp CEEEEECSHHHHHHHHHHHHHTTSCEECTTCCSSCCGGGEEE--CTTCCEEEEECGGGHHHHTT--TSSEEEECHHHHGG
T ss_pred CEEEecCCccHHHHHHHHHHHCCCEEecCCCCCCCCHHHHhC--CCCCCEEEEcCHHHHhhhcc--CccEEEecccHHHH
Confidence 489999877777789999999999 4443211 112333 22468999999999999884 58999999999999
Q ss_pred ccCCC-cc-eeeecCCCCcccEEEEEEEeCC
Q 025329 159 FGQGN-ED-LIIVHDALDYGDCRLSLAIPKY 187 (254)
Q Consensus 159 ~~~d~-~~-l~~~l~dLgfG~CRLvVAvP~~ 187 (254)
.|.+. .+ ++ +++-.--.+.+ +|+.++
T Consensus 182 agl~p~~dal~--~E~~~~~y~nv-iavr~~ 209 (237)
T 3k2d_A 182 INLTPEKDGVF--VEDKESPYVNL-IVARQD 209 (237)
T ss_dssp GTCCHHHHCSE--ECCSSSSCCEE-EEEETT
T ss_pred cCCCcccceeE--EcCCCCCcEEE-EEEecc
Confidence 98874 23 33 23433334544 455544
No 51
>3ir1_A Outer membrane lipoprotein GNA1946; D-methionine cultured, protein binding; 2.15A {Neisseria meningitidis}
Probab=84.21 E-value=2 Score=38.25 Aligned_cols=98 Identities=13% Similarity=0.146 Sum_probs=66.6
Q ss_pred eEEEecCCCCChHHHHHHHHhCCC-ccCCCC-----CCceEeecCCCCCeEEEeecCcchhhhhhcCceeeeeeccceee
Q 025329 84 IRLGLPSKGRMAADTLDLLKDCQL-SVKQVN-----PRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVS 157 (254)
Q Consensus 84 LrIALPsKGRL~e~tl~LL~~aGi-~v~~~~-----~R~L~~~~~~~p~iev~~vRp~DIp~yV~~G~aDlGIvG~DvL~ 157 (254)
=+||+|+...=..-.+.||+++|+ +++... .-.-+.. |-.+++|.-+.+.-+|+-+.+ +|+.|+-.++..
T Consensus 101 a~IaIPnDptN~~RaL~lL~~aGLIkLk~~~~~~~~T~~DI~~--Npk~lk~~e~daaql~r~l~d--vD~avin~nya~ 176 (245)
T 3ir1_A 101 STVSAPNDPSNFARVLVMLDELGWIKLKDGINPLTASKADIAE--NLKNIKIVELEAAQLPRSRAD--VDFAVVNGNYAI 176 (245)
T ss_dssp CEEEEECSHHHHHHHHHHHHHTTSSEECTTCCGGGCCGGGEEE--CTTCCEEEEECGGGSGGGGGT--SSEEEECHHHHH
T ss_pred CEEEecCCccHHHHHHHHHHHCCCEEecCCCCCCcCCHHHHhc--CCCCCEEEEeCHHHHhhhccc--cCEEEEchhHHH
Confidence 479999877777889999999998 443321 1122333 224689999999999998855 899999999999
Q ss_pred cccCCCcceeeecCCCCcccEEEEEEEeCC
Q 025329 158 EFGQGNEDLIIVHDALDYGDCRLSLAIPKY 187 (254)
Q Consensus 158 E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~ 187 (254)
+.|.+..+.+. ++..--.+.+.++-.++
T Consensus 177 ~agl~~~dal~--E~~~~~y~Nvivvr~~~ 204 (245)
T 3ir1_A 177 SSGMKLTEALF--QEPSFAYVNWSAVKTAD 204 (245)
T ss_dssp HTTCCGGGCSE--ECCCCTTCCEEEEEGGG
T ss_pred HcCCCccccee--cCCCCCcEEEEEEeccc
Confidence 98877544332 34444455554444433
No 52
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=84.04 E-value=2.5 Score=35.90 Aligned_cols=121 Identities=11% Similarity=0.071 Sum_probs=68.3
Q ss_pred CceEEEecCCCCChHHHHHHHHhCCCccCCCCCCceEeecCCCCCeEEEeec---CcchhhhhhcCceeeeeeccceee-
Q 025329 82 DEIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQR---PKDIVRKLLSGDLDLGIVGLDTVS- 157 (254)
Q Consensus 82 ~~LrIALPsKGRL~e~tl~LL~~aGi~v~~~~~R~L~~~~~~~p~iev~~vR---p~DIp~yV~~G~aDlGIvG~DvL~- 157 (254)
+.|||+.+.-|--.......|.+. +. ++ .+++++.+.. ..++...|..|.+|+++++.+...
T Consensus 19 ~~i~i~~~~~~g~~~~~~~~la~~-~~------~~-------~~g~~v~v~~~~~~~~~~~~l~~g~~Dl~~~~~~~~~~ 84 (314)
T 1us5_A 19 EFITIGSGSTTGVYFPVATGIAKL-VN------DA-------NVGIRANARSTGGSVANINAINAGEFEMALAQNDIAYY 84 (314)
T ss_dssp EEEEEECCCTTSSHHHHHHHHHHH-HH------HH-------TSSEEEEEECCSCHHHHHHHHHTTSCSEEEEEHHHHHH
T ss_pred ceEEEEeCCCCchhHHHHHHHHHH-HH------hc-------CCCceEEEEecCcHHHHHHHHHcCCCcEEEEccHhHHH
Confidence 469999985555444344444431 10 00 1233333331 357889999999999999866532
Q ss_pred --cccC-------CCcceeeecCCCCcccEEEEEEEeCCCccccccchHHhhcCCcccCCCCcEEEcCCCc-----cHHH
Q 025329 158 --EFGQ-------GNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFTY-----LGPK 223 (254)
Q Consensus 158 --E~~~-------d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~~~r~lRVATkYPn-----Lark 223 (254)
+... ...++. .+. .+..-.++++++.+ .++++++||.+ ++|+.--+. +.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~-~v~--~~~~~~~~lvv~~~---~~i~sl~dL~g---------~~i~~~~~gs~~~~~~~~ 149 (314)
T 1us5_A 85 AYQGCCIPAFEGKPVKTIR-ALA--ALYPEVVHVVARKD---AGIRTVADLKG---------KRVVVGDVGSGTEQNARQ 149 (314)
T ss_dssp HHHTCSSTTTTTCCCTTEE-EEE--EEEEEEEEEEEETT---SSCSSGGGGTT---------SEEECCCTTCHHHHHHHH
T ss_pred HhcCCCCCCCCCCCccchh-ehh--hcCcceEEEEEECC---CCCCcHHHhCC---------CEeecCCCCchHHHHHHH
Confidence 1100 011222 111 23445678888887 35778899862 466652222 4567
Q ss_pred HHHHcCCc
Q 025329 224 FMKDNGLK 231 (254)
Q Consensus 224 yf~~~Gi~ 231 (254)
++++.|++
T Consensus 150 ~l~~~G~~ 157 (314)
T 1us5_A 150 ILEAYGLT 157 (314)
T ss_dssp HHHHTTCC
T ss_pred HHHHcCCC
Confidence 88888984
No 53
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=83.94 E-value=1.5 Score=35.21 Aligned_cols=102 Identities=12% Similarity=0.063 Sum_probs=58.9
Q ss_pred CCeEEE--eecCcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCccc-cccchHHhhc
Q 025329 125 SNLEVW--FQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFE-NINSLRELAQ 201 (254)
Q Consensus 125 p~iev~--~vRp~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~-dv~sl~dL~~ 201 (254)
|++++. .....++...|.+|.+|+||+.... . . .++. -..++.-++++++|.+-++. +.-+++||.+
T Consensus 35 P~v~l~l~~~~~~~l~~~L~~g~iDl~i~~~~~-~--~---~~l~----~~~l~~~~~~~v~~~~hpla~~~i~l~dL~~ 104 (218)
T 2y7p_A 35 PHIQISTLRPNAGNLKEDMESGAVDLALGLLPE-L--Q---TGFF----QRRLFRHRYVCMFRKDHPSAKSPMSLKQFTE 104 (218)
T ss_dssp TTCEEEEECCCTTTHHHHHHHTSSCEEEECCTT-C--C---TTEE----EEEEEEECEEEEEETTCSSCCSSCCHHHHHH
T ss_pred CCCEEEEEeCCcccHHHHHhCCCceEEEecCCC-C--C---ccee----EEEeeeccEEEEEcCCCCCCCCCCCHHHHhh
Confidence 444444 4466899999999999999975321 1 1 1222 13467788899999875432 2235788864
Q ss_pred CCcccCCCCcEEE--cCCCccHHHHHHHcCCceEEEEEcCCcee
Q 025329 202 MPQWTAEKPLRVA--TGFTYLGPKFMKDNGLKHVVFSTADGALE 243 (254)
Q Consensus 202 ~~~~~~~r~lRVA--TkYPnLarkyf~~~Gi~~veIi~l~GSvE 243 (254)
.+- +... +.+-....++|++.|+. .++.--..+.+
T Consensus 105 ~~~------i~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~ 141 (218)
T 2y7p_A 105 LEH------VGVVALNTGHGEVDGLLERAGIK-RRMRLVVPHFI 141 (218)
T ss_dssp SEE------EEECCTTSGGGGHHHHHHHTTCC-CEEEEEESSST
T ss_pred CCC------EEeecCCCccCHHHHHHHhcCCc-ceEEEEcCcHH
Confidence 321 0010 11234567788888985 44433333444
No 54
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=83.70 E-value=1.8 Score=38.58 Aligned_cols=140 Identities=14% Similarity=0.110 Sum_probs=81.8
Q ss_pred CCCCceEEEecCCCCChHHHHHHHHhCCCccCCCCCCceEeecCCCCCeEEEeec---CcchhhhhhcCceeeeeeccce
Q 025329 79 SERDEIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQR---PKDIVRKLLSGDLDLGIVGLDT 155 (254)
Q Consensus 79 ~~~~~LrIALPsKGRL~e~tl~LL~~aGi~v~~~~~R~L~~~~~~~p~iev~~vR---p~DIp~yV~~G~aDlGIvG~Dv 155 (254)
.+...|||+.++-|--.+..-..|.+. +. +++ .. .+++++.+.. ..+....|..|.+|+|+++.++
T Consensus 29 ~~~~~i~i~~g~~gG~~~~~~~~la~~-l~------~~~-~~---~~g~~v~v~~~~g~~~~i~~l~~g~~D~~~~~~~~ 97 (327)
T 4ddd_A 29 LNREYILIGTGSMTGVYYPIGGSICRF-IA------SDY-GK---DNKIICSISSTTGSVYNLNSIRYSNMDISIVQSDL 97 (327)
T ss_dssp CCCEEEEEECCCTTSSHHHHHHHHHHH-HH------HHH-GG---GTSEEEEEECCCCHHHHHHHHHTTSCSEEEEEHHH
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHH-HH------hcc-CC---CCCeEEEEEecCcHHHHHHHHHcCCCcEEEECcHH
Confidence 455679999988887777666665551 11 111 00 1245555443 2466778999999999999887
Q ss_pred eecccC---------CCcceeeecCCCCcccEEEEEEEeCCCccccccchHHhhcCCcccCCCCcEEEcCCCc-----cH
Q 025329 156 VSEFGQ---------GNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFTY-----LG 221 (254)
Q Consensus 156 L~E~~~---------d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~~~r~lRVATkYPn-----La 221 (254)
+..... ...++. .+- .+..-.++++++.+ .++++++||+ ++||+..-+. ..
T Consensus 98 ~~~a~~g~~~f~~~~~~~d~~-~v~--~~~~~~~~lvv~~d---s~i~sl~DL~---------gk~v~~~~~Gs~~~~~~ 162 (327)
T 4ddd_A 98 EYYAYNGLGFYEKMLPMDNLR-MLA--SLHKEYLTIVVKKS---SNISVIDDIK---------GKRVNIGSPGTGVRVAM 162 (327)
T ss_dssp HHHHHHTCGGGTTSCCCTTEE-EEE--EEEEEEEEEEEETT---SSCCSGGGGT---------TSEEECCSTTSHHHHHH
T ss_pred HHHHHhCcCcccccCCCcchh-ehh--ccCCccEEEEEECC---CCCCCHHHhC---------CCEEecCCCCccHHHHH
Confidence 653210 011222 111 23445677888888 4678899985 2467654332 35
Q ss_pred HHHHHHcCCc--eEEEEEcCCceec
Q 025329 222 PKFMKDNGLK--HVVFSTADGALEA 244 (254)
Q Consensus 222 rkyf~~~Gi~--~veIi~l~GSvEl 244 (254)
+.++++.|++ ++..+.-.|.-|+
T Consensus 163 ~~~l~~~Gi~~~~v~~v~~~g~~~a 187 (327)
T 4ddd_A 163 LKLLGEKGWTKKDFSVMAELKSSEQ 187 (327)
T ss_dssp HHHHHHHTCCGGGCSEEECCCHHHH
T ss_pred HHHHHHcCCChHhcchhhcCCHHHH
Confidence 6678888984 1223444454443
No 55
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=83.15 E-value=2 Score=35.48 Aligned_cols=100 Identities=14% Similarity=0.134 Sum_probs=56.8
Q ss_pred CCeEEEee--cCcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCccc--cccchHHhh
Q 025329 125 SNLEVWFQ--RPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFE--NINSLRELA 200 (254)
Q Consensus 125 p~iev~~v--Rp~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~--dv~sl~dL~ 200 (254)
|++++.+. ...++...+.+|.+|+||+..+. + . .++. ...++..++++++|.+.++. +.-+++||.
T Consensus 118 P~i~l~~~~~~~~~~~~~l~~g~~Dl~i~~~~~--~-~---~~l~----~~~l~~~~~~~v~~~~~pl~~~~~~~~~dL~ 187 (294)
T 1ixc_A 118 PTATVSLTHMTKDEQVEGLLAGTIHVGFSRFFP--R-H---PGIE----IVNIAQEDLYLAVHRSQSGKFGKTCKLADLR 187 (294)
T ss_dssp TTEEEEEEECCHHHHHHHHHHTSCSEEEESCCC--C-C---TTEE----EEEEEEEEEEEEEEGGGGGGTCSEECGGGGT
T ss_pred CCcEEEEEeCCHHHHHHHHHCCCccEEEEecCC--C-C---CCce----EEEEeeccEEEEEeCCCccccCCccCHHHHc
Confidence 44555443 34588899999999999986542 1 1 2232 23467788999988774321 233567775
Q ss_pred cCCcccCCCCcEEEcC------CCccHHHHHHHcCCceEEEEEcCCcee
Q 025329 201 QMPQWTAEKPLRVATG------FTYLGPKFMKDNGLKHVVFSTADGALE 243 (254)
Q Consensus 201 ~~~~~~~~r~lRVATk------YPnLarkyf~~~Gi~~veIi~l~GSvE 243 (254)
+.+ -|... +.....++|++.|+. .++.--..+.+
T Consensus 188 ~~~--------~i~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~ 227 (294)
T 1ixc_A 188 AVE--------LTLFPRGGRPSFADEVIGLFKHAGIE-PRIARVVEDAT 227 (294)
T ss_dssp TCE--------EEECCCSSSSCHHHHHHHHHHHTTCC-CEEEEECSSHH
T ss_pred CCC--------EEeeCCCCCchHHHHHHHHHHHCCCC-cceeeecCCHH
Confidence 321 12221 223455778888874 34433333333
No 56
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=82.52 E-value=3.7 Score=33.08 Aligned_cols=95 Identities=18% Similarity=0.112 Sum_probs=62.3
Q ss_pred eecCcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCccccccchHHhhcCCcccCCCC
Q 025329 131 FQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKP 210 (254)
Q Consensus 131 ~vRp~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~~~r~ 210 (254)
.+.-...-..+..|.+|+.+.|.-.-.|.... +.. --.|.....++.++.+.. ..+++++||.. ++
T Consensus 50 ~~~~~~~~~~l~~g~~D~~~~~~~~t~~r~~~----~~~--s~p~~~~~~~~~~~~~~~-~~i~~~~dL~~-------~g 115 (245)
T 3k4u_A 50 PTSWDGLIPGLVTEKFDIIISGMTISQERNLR----VNF--VEPYIVVGQSLLVKKGLE-KGVKSYKDLDK-------PE 115 (245)
T ss_dssp ECCGGGHHHHHHTTSCSEECSSCBCCHHHHTT----SEE--CSCSEEECEEEEEETTTT-TTCCSGGGGCC-------SS
T ss_pred EccHHHHHHHHhCCCcCEEEecCcCCHHHHhh----cCc--chhhheeceEEEEECCcc-cccCCHHHhcc-------CC
Confidence 33456777889999999988775544443221 111 126667778888888732 45778888852 25
Q ss_pred cEEEcCCCccHHHHHHHcCCceEEEEEcCC
Q 025329 211 LRVATGFTYLGPKFMKDNGLKHVVFSTADG 240 (254)
Q Consensus 211 lRVATkYPnLarkyf~~~Gi~~veIi~l~G 240 (254)
+|||+---.....++++..- .++++....
T Consensus 116 ~~i~v~~g~~~~~~l~~~~~-~~~~~~~~~ 144 (245)
T 3k4u_A 116 LTLVTKFGVSAEYAAKRLFK-NAKLKTYDT 144 (245)
T ss_dssp CEEEEETTSHHHHHHHHHCS-SSEEEEESS
T ss_pred cEEEEeCCcHHHHHHHhhCC-cCCEEEeCC
Confidence 79998888888888887532 245555443
No 57
>3up9_A Putative uncharacterized protein; membrane lipoprotein, L-methionine binding protein, NLPA LIP structural genomics; HET: PG4 PE4; 2.35A {Actinomyces odontolyticus} SCOP: c.94.1.0
Probab=82.15 E-value=1.3 Score=39.41 Aligned_cols=78 Identities=19% Similarity=0.243 Sum_probs=58.0
Q ss_pred eEEEecCCCCChHHHHHHHHhCCC-ccCCCCCCceEeecCCCCCeEEEeecCcchhhhhhcCceeeeeeccceeecccCC
Q 025329 84 IRLGLPSKGRMAADTLDLLKDCQL-SVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQG 162 (254)
Q Consensus 84 LrIALPsKGRL~e~tl~LL~~aGi-~v~~~~~R~L~~~~~~~p~iev~~vRp~DIp~yV~~G~aDlGIvG~DvL~E~~~d 162 (254)
=+||+|++..-..-.+.||+++|+ +++....-.+.+...+..+++|.-+.+.-+|+-+.+ +|+.|+-.++..+.|.+
T Consensus 107 a~IaIPnD~tN~~RaL~lL~~aGLIkLk~~~~~~~~~T~~DIk~lk~~e~daaqlpr~l~d--vd~avin~nya~~agl~ 184 (245)
T 3up9_A 107 GTIGIISDTANQSRALELLATQGLVSIPEGDGDVNINTVTKLKNFDFREVEGPQLVRSLDD--FDYAVINGNFAQEGGKT 184 (245)
T ss_dssp EEEEEECSHHHHHHHHHHHHHTTSEECCCCC--CSTTTSEESSSEEEEEECGGGHHHHTTT--SSEEEECHHHHHHTTCC
T ss_pred CEEEEecCcchHHHHHHHHHHCCCEEecCCCCCcCcCChhhccccEEEEeCHHHHhhhccc--CCEEEEchhHHHHcCcC
Confidence 589999888778889999999999 443321100212111225799999999999999865 89999999999999887
Q ss_pred C
Q 025329 163 N 163 (254)
Q Consensus 163 ~ 163 (254)
.
T Consensus 185 p 185 (245)
T 3up9_A 185 I 185 (245)
T ss_dssp H
T ss_pred c
Confidence 4
No 58
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=81.42 E-value=2.2 Score=34.00 Aligned_cols=92 Identities=18% Similarity=0.229 Sum_probs=51.5
Q ss_pred CCeEEEee--cCcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCccc--cccchHHhh
Q 025329 125 SNLEVWFQ--RPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFE--NINSLRELA 200 (254)
Q Consensus 125 p~iev~~v--Rp~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~--dv~sl~dL~ 200 (254)
|++++.+. ...++...|.+|.+|+||+..+. +.. .++. -..++.-++++++|.+.++. ..-+++||.
T Consensus 41 P~v~l~l~~~~~~~~~~~l~~g~~Dl~i~~~~~--~~~---~~l~----~~~l~~~~~~~v~~~~hpla~~~~i~~~dL~ 111 (228)
T 2fyi_A 41 PEVRLELIQGTPQEIATLLQNGEADIGIASERL--SND---PQLV----AFPWFRWHHSLLVPHDHPLTQISPLTLESIA 111 (228)
T ss_dssp TTEEEEEEECCHHHHHHHHHHTSCSEEEESSSS--TTC---TTEE----EEEEEEECEEEEEETTCGGGTSSSCCHHHHT
T ss_pred CCcEEEEEeCCHHHHHHHHHcCCccEEEEeccc--CCC---CCce----EEEeeecceEEEecCCCCccccCccCHHHHc
Confidence 55555544 44688999999999999986321 111 1222 12456677788888774321 234578876
Q ss_pred cCCcccCCCCcEEEc--CCCccHHHHHHHcCCc
Q 025329 201 QMPQWTAEKPLRVAT--GFTYLGPKFMKDNGLK 231 (254)
Q Consensus 201 ~~~~~~~~r~lRVAT--kYPnLarkyf~~~Gi~ 231 (254)
+.+- +.... .+.....++|++.|+.
T Consensus 112 ~~~~------i~~~~~~~~~~~~~~~~~~~~~~ 138 (228)
T 2fyi_A 112 KWPL------ITYRQGITGRSRIDDAFARKGLL 138 (228)
T ss_dssp TSCE------EEECTTSTTHHHHHHHHHHTTCC
T ss_pred CCCe------EEecCCccHHHHHHHHHHHcCCC
Confidence 4310 11111 1223455677777773
No 59
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=80.65 E-value=2.8 Score=36.78 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=20.3
Q ss_pred ecCcchhhhhhcCceeeeeeccce
Q 025329 132 QRPKDIVRKLLSGDLDLGIVGLDT 155 (254)
Q Consensus 132 vRp~DIp~yV~~G~aDlGIvG~Dv 155 (254)
..+.|+...|..|.+|+|+++...
T Consensus 45 g~~~~~~~~v~~G~id~~~~~~~~ 68 (301)
T 2pfz_A 45 YKAPEIKRAVQGNQAQIGEILLTN 68 (301)
T ss_dssp SCGGGHHHHHHTTSSSEEEEEGGG
T ss_pred CChHHHHHHHHCCceeeEechhhh
Confidence 456899999999999999997543
No 60
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=79.98 E-value=3.6 Score=34.04 Aligned_cols=88 Identities=16% Similarity=0.092 Sum_probs=59.2
Q ss_pred CcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCccccccchHHhhcCCcccCCCCcEE
Q 025329 134 PKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRV 213 (254)
Q Consensus 134 p~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~~~r~lRV 213 (254)
-.+.-..+..|.+|+.. |.-.-.|... .+.. --.|.....++.++.+. ..+++++||+ ++||
T Consensus 81 ~~~~~~~l~~G~~D~~~-~~~~t~~r~~----~~~f--s~p~~~~~~~l~~~~~~--~~i~~~~dL~---------g~~i 142 (267)
T 3mpk_A 81 VEELIAKLRSGEADMAG-ALFVNSARES----FLSF--SRPYVRNGMVIVTRQDP--DAPVDADHLD---------GRTV 142 (267)
T ss_dssp HHHHHHHHHHTSCSEEE-EEECCGGGTT----TEEE--CSCSEEECEEEEEESST--TSCSSGGGCT---------TCEE
T ss_pred HHHHHHHHHCCCccEEe-cccCChhhhc----ceEe--chhhccCceEEEEECCC--CCCCCHHHHC---------CCEE
Confidence 46788899999999953 5443333322 1211 13667777888888873 4578888875 4799
Q ss_pred EcCCCccHHHHHHHcCCceEEEEEcCC
Q 025329 214 ATGFTYLGPKFMKDNGLKHVVFSTADG 240 (254)
Q Consensus 214 ATkYPnLarkyf~~~Gi~~veIi~l~G 240 (254)
|+---.....|+++..-+ ++++....
T Consensus 143 ~v~~g~~~~~~l~~~~~~-~~~~~~~~ 168 (267)
T 3mpk_A 143 ALVRNSAAIPLLQRRYPQ-AKVVTADN 168 (267)
T ss_dssp EEETTCTHHHHHHHHCTT-SEEEEESS
T ss_pred EEeCCchhHHHHHHhCCC-cEEEEeCC
Confidence 998888889999887532 56665544
No 61
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=79.92 E-value=4.4 Score=32.81 Aligned_cols=82 Identities=20% Similarity=0.282 Sum_probs=57.0
Q ss_pred cchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCccccccchHHhhcCCcccCCCCcEEE
Q 025329 135 KDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVA 214 (254)
Q Consensus 135 ~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~~~r~lRVA 214 (254)
..+-..+..|.+|+++.|.-.-.|... .+.. --.|.....++.++.+. .+++++||. . + -....+
T Consensus 68 ~~~~~~l~~g~~D~~~~~~~~t~~R~~----~~~f--s~p~~~~~~~~~~~~~~---~i~~~~dL~-~-~----v~v~~g 132 (265)
T 2v3u_A 68 NGLVGELVFKRADIGISALTITPDREN----VVDF--TTRYMDYSVGVLLRRGT---SIQSLQDLS-K-Q----TDIPYG 132 (265)
T ss_dssp CHHHHHHHTTSCSEECSSCBCCHHHHT----TEEE--CSCSEEECEEEEEETTC---CCCSHHHHH-T-C----SSSCEE
T ss_pred chHHHHHHcCCcCeEEeeeEeehhhhc----cccc--cceeeeccEEEEEECCC---Cccchhhhh-h-h----hcEEEE
Confidence 567778999999999877554444322 1211 23566777888888873 478899986 1 1 135788
Q ss_pred cCCCccHHHHHHHcCCc
Q 025329 215 TGFTYLGPKFMKDNGLK 231 (254)
Q Consensus 215 TkYPnLarkyf~~~Gi~ 231 (254)
|.+.....+||++.|++
T Consensus 133 ~~~~~~~~~~l~~~~~~ 149 (265)
T 2v3u_A 133 TVLDSAVYQHVRMKGLN 149 (265)
T ss_dssp CBTTSHHHHHHHHHHTC
T ss_pred EeccHHHHHHHHhcCCC
Confidence 88888889999987763
No 62
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=79.10 E-value=3.6 Score=33.78 Aligned_cols=83 Identities=14% Similarity=0.086 Sum_probs=50.7
Q ss_pred EEeecCcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCccccccchHHhhcCCcccCC
Q 025329 129 VWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAE 208 (254)
Q Consensus 129 v~~vRp~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~~~ 208 (254)
+......++-..+..|.+|+++.|...-.|.... +.. --.|.....++.+..+.. .++++++||+
T Consensus 72 ~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~r~~~----~~f--s~p~~~~~~~~~~~~~~~-~~i~~~~dL~-------- 136 (259)
T 4dz1_A 72 ITEYAWDGMLGAVASGQADVAFSGISITDKRKKV----IDF--SEPYYINSFYLVSMANHK-ITLNNLNELN-------- 136 (259)
T ss_dssp EEECCHHHHHHHHHHTSSSEEEEEEECCHHHHTT----EEE--CCCSEEEEEEEEEETTSC-CCCCSGGGGG--------
T ss_pred EEEcCHHHHHHHHhCCCCCEEEECCcCCHHHhhc----ccc--ccchhhCceEEEEEcCCC-CCCCCHHHhC--------
Confidence 3333446677889999999998875544444321 211 125666777777765532 3678899986
Q ss_pred CCcEEEcCCCccHHHHHHH
Q 025329 209 KPLRVATGFTYLGPKFMKD 227 (254)
Q Consensus 209 r~lRVATkYPnLarkyf~~ 227 (254)
++|||+---.....++++
T Consensus 137 -g~~v~v~~g~~~~~~l~~ 154 (259)
T 4dz1_A 137 -KYSIGYPRGMAYSDLIKN 154 (259)
T ss_dssp -GSCEEEETTSTHHHHHHH
T ss_pred -CCEEEEeCCcHHHHHHHH
Confidence 357776554444555544
No 63
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=79.10 E-value=7.7 Score=31.51 Aligned_cols=81 Identities=19% Similarity=0.177 Sum_probs=57.5
Q ss_pred cchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCccccccchHHhhcCCcccCCCCcEEE
Q 025329 135 KDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVA 214 (254)
Q Consensus 135 ~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~~~r~lRVA 214 (254)
..+-..+..|.+|+.+.|.-.-.|.... +.. --.|-....++.++.+. .+++++||.+ .+..+|+
T Consensus 72 ~~~~~~l~~g~~D~~~~~~~~t~eR~~~----~~f--s~py~~~~~~~~~~~~~---~i~~~~dL~g------~~~~~ig 136 (259)
T 3g3k_A 72 NGMVRELIDHKADLAVAPLAITYVREEV----IDF--SKPFMTLGISILYRKGT---PIDSADDLAK------QTKIEYG 136 (259)
T ss_dssp CHHHHHHHTTSCSEECSSCBCCHHHHTT----EEE--CSCSEEECEEEEEESSS---SCCSHHHHHT------CSSSEEE
T ss_pred hHHHHHHhcCcccEEEeeeEecccccce----Eee--eeeeeeCCEEEEEeCCc---cccCHHHhcc------CCCceEE
Confidence 5677789999999998876655554322 211 23677778888998883 5789999973 1246788
Q ss_pred cCCCccHHHHHHHcCC
Q 025329 215 TGFTYLGPKFMKDNGL 230 (254)
Q Consensus 215 TkYPnLarkyf~~~Gi 230 (254)
+-.-..+.++|.+.++
T Consensus 137 ~~~~~~~~~~~~~~~~ 152 (259)
T 3g3k_A 137 AVEDGATMTFFKRSKI 152 (259)
T ss_dssp EETTSHHHHHHHHCCS
T ss_pred EecCcHHHHHHhhccc
Confidence 8777777888887664
No 64
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=78.83 E-value=1.3 Score=35.02 Aligned_cols=95 Identities=16% Similarity=0.217 Sum_probs=53.3
Q ss_pred eEEEeecCcchhhhhhcCc-eeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCccccccchHHhhcCCcc
Q 025329 127 LEVWFQRPKDIVRKLLSGD-LDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQW 205 (254)
Q Consensus 127 iev~~vRp~DIp~yV~~G~-aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~ 205 (254)
+++......++-..+..|. +|+++++.....+...+ ..+++......|+.-++++++|.+..+. .+++||... .+
T Consensus 29 v~~~~~~s~~l~~~l~~g~~~Dv~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~vlv~~~~~~~~--~~~~dL~~~-~~ 104 (231)
T 1atg_A 29 VVISSGSSGPVYAQIVNGAPYNVFFSADEKSPEKLDN-QGFALPGSRFTYAIGKLVLWSAKPGLVD--NQGKVLAGN-GW 104 (231)
T ss_dssp EEEEEECHHHHHHHHHTTCCCSEEECSSSHHHHHHHH-TTCBCTTCCEEEEECCEEEEESSTTTSC--TTSGGGGSS-SC
T ss_pred EEEEECCcHHHHHHHHcCCCCCEEEeCChhHHHHHHh-cCCCcCCceeEeeeeeEEEEEcCCCCCC--cchhhhccC-CC
Confidence 4555556688899999998 99999965322211000 0111100123566678899998875432 256777531 00
Q ss_pred cCCCCcEEEcCCCc------cHHHHHHHcCC
Q 025329 206 TAEKPLRVATGFTY------LGPKFMKDNGL 230 (254)
Q Consensus 206 ~~~r~lRVATkYPn------Larkyf~~~Gi 230 (254)
.+|+.-.|. .++++|++.|+
T Consensus 105 -----~~i~~~~~~~~~~~~~~~~~l~~~g~ 130 (231)
T 1atg_A 105 -----RHIAISNPQIAPYGLAGTQVLTHLGL 130 (231)
T ss_dssp -----SCEEEECTTTCHHHHHHHHHHHHTTC
T ss_pred -----CEEEecCCCCCchhHHHHHHHHHCCC
Confidence 144433332 45677888886
No 65
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=78.26 E-value=4.9 Score=35.32 Aligned_cols=109 Identities=17% Similarity=0.183 Sum_probs=58.0
Q ss_pred cchhhhhhcCceeeeeecc-ceeeccc-CCCcceeeecC-CCCcccEEEEEEEeCCCccccccchHHhhcCCcccCCCCc
Q 025329 135 KDIVRKLLSGDLDLGIVGL-DTVSEFG-QGNEDLIIVHD-ALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPL 211 (254)
Q Consensus 135 ~DIp~yV~~G~aDlGIvG~-DvL~E~~-~d~~~l~~~l~-dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~~~r~l 211 (254)
.++-..+..|.+|+++.|- ..+.+.. .+ ..++.... .-|--....+++++.+ .++++++||... .+++
T Consensus 47 ~~~i~al~~G~vDi~~~~~~~~~~~~~~~~-~~~~a~~~~~~g~~~~~~~lvv~~d---s~i~sl~DL~~~-----~kgk 117 (310)
T 3n5l_A 47 AGIIQGMRFDKVDIAWYGNKAAMEAVDRAH-GEIFAQTVAASGAPGYWSLLIANKD---SKIDSLEDMLAN-----AKSL 117 (310)
T ss_dssp HHHHHHHHTTSCSEEECCHHHHHHHHHHSC-EEEEEEEEETTCCSEEEEEEEEETT---CSCCSHHHHHHT-----GGGC
T ss_pred HHHHHHHHcCCCCEEEECcHHHHHHHHhcC-CeEEEEEeccCCCcceEEEEEEECC---CCCCCHHHHhhh-----cCCC
Confidence 5678889999999999884 3333221 11 11111110 0111123457888888 468899999321 0135
Q ss_pred EEEc-----CCCccHHHH-H-HHcCCce---EEEEEcCCcee---cccCCCcccc
Q 025329 212 RVAT-----GFTYLGPKF-M-KDNGLKH---VVFSTADGALE---AAPAVRITHL 253 (254)
Q Consensus 212 RVAT-----kYPnLarky-f-~~~Gi~~---veIi~l~GSvE---lAP~lGlADa 253 (254)
+||. .-.++..++ | ++.|++. ++.+. .|+.+ .+-.-|-+|+
T Consensus 118 ~ia~~~~gs~~~~l~~~~~l~~~~Gi~~~~~~~~v~-~g~~~~~~~al~~G~vDa 171 (310)
T 3n5l_A 118 TFGNGDPNSTSGYLVPGYYVFAKNNVDPVKAFKRTL-NSSHEVNALAVANKQVDV 171 (310)
T ss_dssp EEEECCTTCTTTTHHHHHHTTTTTTCCHHHHSSEEE-ECCHHHHHHHHHTTSSSE
T ss_pred EEEecCCCccHhHHHHHHHHHHHcCCChHHhccccc-cCCHHHHHHHHHcCCccE
Confidence 7873 234566664 4 7778741 34442 45443 2344455543
No 66
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=76.69 E-value=4.9 Score=35.77 Aligned_cols=75 Identities=17% Similarity=0.269 Sum_probs=51.5
Q ss_pred eEEEecCCCCChHHHHHHHHhCCC-ccCCCCC----CceEeecCCCCCeEEEeecCcchhhhhhcCceeeeeeccceeec
Q 025329 84 IRLGLPSKGRMAADTLDLLKDCQL-SVKQVNP----RQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSE 158 (254)
Q Consensus 84 LrIALPsKGRL~e~tl~LL~~aGi-~v~~~~~----R~L~~~~~~~p~iev~~vRp~DIp~yV~~G~aDlGIvG~DvL~E 158 (254)
=+||+|+...-..-.+.+|+++|+ .++.... -+-+... -.++++.-+.+.++|.-+ |.+|++++-..+..+
T Consensus 138 k~IAip~~~s~~~~~l~lL~~~Gli~l~~~~~~~~t~~dI~~n--p~~v~~v~~~~~~~~~al--~~VDaa~i~~~~a~~ 213 (295)
T 1p99_A 138 AKVVIPNDVSNQARALKLLEAAGLIKLKKDFGLAGTVKDITSN--PKHLKITAVDAQQTARAL--SDVDIAVINNGVATK 213 (295)
T ss_dssp CEEEEECSHHHHHHHHHHHHHTTSCEECTTCCTTCCGGGEEEC--TTCCEEEEECGGGTTGGG--GTSSEEEECHHHHHH
T ss_pred CEEEecCCCcHHHHHHHHHHHCCCccccCCCCCcCChhhhhcC--CCceEEEEcCHHHHHHHh--hcCCEEEECcHHHHH
Confidence 489999544444556678999998 4443211 1112221 236899999999999888 689999998888877
Q ss_pred ccCC
Q 025329 159 FGQG 162 (254)
Q Consensus 159 ~~~d 162 (254)
.+.+
T Consensus 214 ag~~ 217 (295)
T 1p99_A 214 AGKD 217 (295)
T ss_dssp TTCC
T ss_pred cCCC
Confidence 6654
No 67
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=76.14 E-value=3.8 Score=34.93 Aligned_cols=92 Identities=20% Similarity=0.227 Sum_probs=52.3
Q ss_pred CCeEEEee--cCcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCccc--cccchHHhh
Q 025329 125 SNLEVWFQ--RPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFE--NINSLRELA 200 (254)
Q Consensus 125 p~iev~~v--Rp~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~--dv~sl~dL~ 200 (254)
|++++.+. ...++...|.+|.+|+||+....- .. .++. -..++..++++++|.+.++. ..-+++||.
T Consensus 120 P~v~i~l~~~~~~~~~~~l~~g~~Dlai~~~~~~--~~---~~l~----~~~L~~~~~~~v~~~~~pl~~~~~~~~~dL~ 190 (324)
T 1al3_A 120 PRVSLHMHQGSPTQIAEAVSKGNADFAIATEALH--LY---DDLV----MLPCYHWNRSIVVTPEHPLATKGSVSIEELA 190 (324)
T ss_dssp TEEEEEEEECCHHHHHHHHHTTCCSEEEESSCCC--TT---SCEE----EEEEEEECEEEEECTTSTTTTTSCCCHHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHCCCceEEEEecCCC--CC---CCee----EEEecCCceEEEEcCCCccccCCCCCHHHHh
Confidence 55655544 345888999999999999864321 11 1222 12456677888888774322 234678886
Q ss_pred cCCcccCCCCcEEEcC--CCccHHHHHHHcCCc
Q 025329 201 QMPQWTAEKPLRVATG--FTYLGPKFMKDNGLK 231 (254)
Q Consensus 201 ~~~~~~~~r~lRVATk--YPnLarkyf~~~Gi~ 231 (254)
+.+- +..... +.....++|++.|+.
T Consensus 191 ~~~~------i~~~~~~~~~~~~~~~~~~~g~~ 217 (324)
T 1al3_A 191 QYPL------VTYTFGFTGRSELDTAFNRAGLT 217 (324)
T ss_dssp TSEE------EEECTTSTTHHHHHHHHHHHTCC
T ss_pred CCCe------EEecCCCcHHHHHHHHHHHcCCC
Confidence 4210 111111 123456778888874
No 68
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=75.69 E-value=5.9 Score=31.37 Aligned_cols=89 Identities=18% Similarity=0.192 Sum_probs=50.9
Q ss_pred eEEEeecCcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCccc--cccchHHhhcCCc
Q 025329 127 LEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFE--NINSLRELAQMPQ 204 (254)
Q Consensus 127 iev~~vRp~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~--dv~sl~dL~~~~~ 204 (254)
+++......++...|.+|.+|+||+.... + . .++. -..++.-++++++|.+.++. ..-+++||.+.+-
T Consensus 61 l~~~~~~~~~~~~~l~~g~~Dl~i~~~~~--~-~---~~l~----~~~l~~~~~~~v~~~~hpl~~~~~i~~~dl~~~~~ 130 (238)
T 2hxr_A 61 LQLQEMSQEKIEDMLCRDELDVGIAFAPV--H-S---PELE----AIPLLTESLALVVAQHHPLAVHEQVALSRLHDEKL 130 (238)
T ss_dssp EEEEECCHHHHHHHHHTTSCSEEEEESSC--C-C---TTEE----EEEEEEEEEEEEEETTSGGGGCSEECGGGGGGCEE
T ss_pred EEEEECCHHHHHHHHHcCCCcEEEEcCCC--C-c---ccce----eeeeccCcEEEEEcCCCcccccCCCCHHHHhcCCe
Confidence 44444445788889999999999986432 1 1 1222 12456788999998874322 2235677753210
Q ss_pred ccCCCCcEEEcCC--CccHHHHHHHcCCc
Q 025329 205 WTAEKPLRVATGF--TYLGPKFMKDNGLK 231 (254)
Q Consensus 205 ~~~~r~lRVATkY--PnLarkyf~~~Gi~ 231 (254)
+.....+ -....++|++.|+.
T Consensus 131 ------i~~~~~~~~~~~~~~~~~~~~~~ 153 (238)
T 2hxr_A 131 ------VLLSAEFATREQIDHYCEKAGLH 153 (238)
T ss_dssp ------EEECTTSHHHHHHHHHHHHTTCC
T ss_pred ------EEecCCccHHHHHHHHHHHcCCC
Confidence 1111111 12356778888874
No 69
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A*
Probab=75.20 E-value=1.4 Score=36.93 Aligned_cols=32 Identities=22% Similarity=0.239 Sum_probs=24.2
Q ss_pred CeEEEeecCcchhhhhhcCceeeeeeccceee
Q 025329 126 NLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVS 157 (254)
Q Consensus 126 ~iev~~vRp~DIp~yV~~G~aDlGIvG~DvL~ 157 (254)
++++.+--+.++...+..|.+|+|+++.....
T Consensus 31 ~v~~~~~~~~~~~~al~~G~~D~~~~~~~~~~ 62 (272)
T 2czl_A 31 PLEPVLEDVETLNRWALEGRLPLTKLSYAAYA 62 (272)
T ss_dssp CEEEEECCHHHHHHHHHTTCCSEEEEEHHHHT
T ss_pred eeEEecCCHHHHHHHHHcCCCCEEEecHHHHH
Confidence 36664555567888899999999999876544
No 70
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=74.89 E-value=6.9 Score=34.12 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=20.3
Q ss_pred ecCcchhhhhhcCceeeeeeccce
Q 025329 132 QRPKDIVRKLLSGDLDLGIVGLDT 155 (254)
Q Consensus 132 vRp~DIp~yV~~G~aDlGIvG~Dv 155 (254)
..+.|+...|..|.+|+|+++.-.
T Consensus 46 g~~~~~~e~v~~G~id~~~~~~~~ 69 (301)
T 2pfy_A 46 LKRPEVKRGVQQGVVQIGEVLVSA 69 (301)
T ss_dssp SCGGGHHHHHHHTSSSEEEEEGGG
T ss_pred CChHHHHHHHHCCCeeeehhhhhh
Confidence 456899999999999999988543
No 71
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=74.81 E-value=3.6 Score=36.68 Aligned_cols=88 Identities=17% Similarity=0.231 Sum_probs=48.5
Q ss_pred cchhhhhhcCceeeeeecc-ceeecc-cCCCcceeeec-CCCCcccEEEEEEEeCCCccccccchHHhhcCCcccCCCCc
Q 025329 135 KDIVRKLLSGDLDLGIVGL-DTVSEF-GQGNEDLIIVH-DALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPL 211 (254)
Q Consensus 135 ~DIp~yV~~G~aDlGIvG~-DvL~E~-~~d~~~l~~~l-~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~~~r~l 211 (254)
.++-..+..|.+|+++.|- ..+.+. ..+ ..++... ..-|--.-..+++++.+ .++++++||... .+++
T Consensus 57 ~~~i~aL~~G~vDia~~~~~~~~~~~~~~~-~~~~a~~~~~~g~~~y~~~lvv~~d---s~i~sl~DL~~~-----~kgk 127 (321)
T 3p7i_A 57 AGIIQGMRFNKVDIAWYGNLSAMEAVDRAN-GQVFAQTVAADGSPGYWSVLIVNKD---SPINNLNDLLAK-----RKDL 127 (321)
T ss_dssp HHHHHHHHTTSCSEEECCHHHHHHHHHHSC-EEEEEEEEETTCCSSBCEEEEEETT---CSCCSHHHHHHT-----GGGC
T ss_pred HHHHHHHHcCCCcEEEEChHHHHHHHHhcC-CEEEEEEeccCCCcceEEEEEEECC---CCCCCHHHHHhh-----cCCC
Confidence 5678889999999999874 333332 112 1112110 00111112347778888 468899999311 1135
Q ss_pred EEE-----cCCCccHHHH--HHHcCCc
Q 025329 212 RVA-----TGFTYLGPKF--MKDNGLK 231 (254)
Q Consensus 212 RVA-----TkYPnLarky--f~~~Gi~ 231 (254)
+|| +...++..++ +++.|++
T Consensus 128 ~va~~~~gsts~~l~~~~~l~~~~Gi~ 154 (321)
T 3p7i_A 128 TFGNGDPNSTSGFLVPGYYVFAKNNIS 154 (321)
T ss_dssp EEEECCTTCTTTTHHHHHHTTGGGTCC
T ss_pred EEEeCCCCccHHHHHHHHHHHHHcCCC
Confidence 787 2223555555 3778874
No 72
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=74.73 E-value=7.9 Score=29.71 Aligned_cols=64 Identities=23% Similarity=0.186 Sum_probs=42.2
Q ss_pred eEEEeecCcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCccc--cccchHHhh
Q 025329 127 LEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFE--NINSLRELA 200 (254)
Q Consensus 127 iev~~vRp~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~--dv~sl~dL~ 200 (254)
+++......++...+.+|.+|+||+....- . .++. ...++..+++++++++.++. ..-+++||.
T Consensus 35 i~i~~~~~~~~~~~l~~g~~Dl~i~~~~~~---~---~~~~----~~~l~~~~~~~v~~~~~pl~~~~~~~~~~L~ 100 (219)
T 3jv9_A 35 LMLEENYTHTLTESLKRGDVDAIIVAEPFQ---E---PGIV----TEPLYDEPFFVIVPKGHSFEELDAVSPRMLG 100 (219)
T ss_dssp EEEEEECHHHHHHHHHHTSSSEEEEESSCC---C---TTEE----EEEEEEEEEEEEEETTCGGGTSSSCCSSTTS
T ss_pred EEEEeCCcHHHHHHHHcCCCCEEEEcCCCC---C---CCee----EEEeeeceEEEEEeCCCCcccCCCCCHHHhc
Confidence 555566778999999999999999976421 1 1222 23567889999998874321 222455554
No 73
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=74.49 E-value=3.6 Score=34.83 Aligned_cols=66 Identities=21% Similarity=0.213 Sum_probs=41.6
Q ss_pred CCeEEEee--cCcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCcccc---c-cchHH
Q 025329 125 SNLEVWFQ--RPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFEN---I-NSLRE 198 (254)
Q Consensus 125 p~iev~~v--Rp~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~d---v-~sl~d 198 (254)
|++++.+. ...|+...|.+|.+|+||+.... . ..++. -..++..++++++|.+.++.. . -+++|
T Consensus 117 P~v~i~l~~~~~~~~~~~l~~g~~Dlai~~~~~-~-----~~~l~----~~~L~~~~~~~v~~~~hpla~~~~~~i~~~d 186 (312)
T 2h9b_A 117 PNLRIELYEMGTKAQTEALKEGRIDAGFGRLKI-S-----DPAIK----HSLLRNERLMVAVHASHPLNQMKDKGVHLND 186 (312)
T ss_dssp TTCEEEEEECCHHHHHHHHHTTSCSEEEESSCC-C-----CTTEE----EEEEEEEEEEEEEETTSGGGGGTTTCBCGGG
T ss_pred CCcEEEEEeCCHHHHHHHHHcCCCCEEEEeCCC-C-----CCCce----EEEeecceEEEEEcCCCccccccCCCCCHHH
Confidence 44444433 45789999999999999986432 1 12232 234677889999988743322 1 35677
Q ss_pred hh
Q 025329 199 LA 200 (254)
Q Consensus 199 L~ 200 (254)
|.
T Consensus 187 L~ 188 (312)
T 2h9b_A 187 LI 188 (312)
T ss_dssp ST
T ss_pred Hc
Confidence 65
No 74
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=74.10 E-value=2.6 Score=35.30 Aligned_cols=91 Identities=18% Similarity=0.132 Sum_probs=57.2
Q ss_pred eEEEeecCcchhhhhhcCc-eeeeeeccc-e---eecccCCCcceeeecCCCCcccEEEEEEEeCCCccc--cc---cch
Q 025329 127 LEVWFQRPKDIVRKLLSGD-LDLGIVGLD-T---VSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFE--NI---NSL 196 (254)
Q Consensus 127 iev~~vRp~DIp~yV~~G~-aDlGIvG~D-v---L~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~--dv---~sl 196 (254)
+++.+-...++-..++.|. +|+.+.+.. + +.+.+ ++..-....|..-+|++++|.+.... ++ +++
T Consensus 36 V~~~~~~s~~l~~~i~~g~~~Dv~~~a~~~~~~~l~~~g-----~~~~~~~~~~~~~~lvl~~~~~~~~~~~~i~~~~~l 110 (237)
T 3r26_A 36 VVSSFASSSTLARQIEAGAPADLFISADQKWMDYAVDKK-----AIDTATRQTLLGNSLVVVAPKASVQKDFTIDSKTNW 110 (237)
T ss_dssp EEEEEECHHHHHHHHHHTCCCSEEECSSHHHHHHHHHTT-----CBCGGGCEEEEEECEEEEEESSCCCCCCCCSTTCCH
T ss_pred EEEEECCHHHHHHHHHcCCCceEEEECCHHHHHHHHHCC-----CCCCCceeeeEcceEEEEEeCCCCcccccccchHhH
Confidence 5566666788999999998 999998743 2 22232 11100123566778999999874322 23 344
Q ss_pred HHhhcCCcccCCCCcEEEcCCCcc------HHHHHHHcCC
Q 025329 197 RELAQMPQWTAEKPLRVATGFTYL------GPKFMKDNGL 230 (254)
Q Consensus 197 ~dL~~~~~~~~~r~lRVATkYPnL------arkyf~~~Gi 230 (254)
.||.. ..|||.-.|+. ++++|++.|+
T Consensus 111 ~~l~~--------~~~iai~~p~~~p~G~~a~~~l~~~g~ 142 (237)
T 3r26_A 111 TSLLN--------GGRLAVGDPEHVPAGIYAKEALQKLGA 142 (237)
T ss_dssp HHHHT--------TCCEEEECTTTCHHHHHHHHHHHHTTC
T ss_pred HHhcC--------CCeEEEeCCCCCChHHHHHHHHHHcCC
Confidence 44431 25888888874 5677888886
No 75
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=73.85 E-value=10 Score=30.85 Aligned_cols=81 Identities=19% Similarity=0.187 Sum_probs=51.3
Q ss_pred cchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCccccccchHHhhcCCcccCCCCcEEE
Q 025329 135 KDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVA 214 (254)
Q Consensus 135 ~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~~~r~lRVA 214 (254)
..+-..+..|.+|+.+.+.-.-.|.... +.. --.|.....++.++.+. .+++++||.+. +..+|+
T Consensus 72 ~~~~~~l~~g~~D~~~~~~~~t~~R~~~----~~f--s~p~~~~~~~~~~~~~~---~i~~~~dL~g~------~~~~ig 136 (263)
T 1mqi_A 72 NGMVGELVYGKADIAIAPLTITLVREEV----IDF--SKPFMSLGISIMIKKGT---PIESAEDLSKQ------TEIAYG 136 (263)
T ss_dssp CHHHHHHHTTSCSEECSSCBCCHHHHTT----EEE--CSCSEEECEEEEEETTC---SCCSHHHHHTC------SSSEEE
T ss_pred HHHHHHHHcCCcCEEEEeeEecHHHHhh----ccc--ccceecccEEEEEcCcc---ccCCHHHHhcc------cCeeEE
Confidence 5677889999999998765443443221 211 13667778888888873 57889999731 123566
Q ss_pred cCCCccHHHHHHHcCC
Q 025329 215 TGFTYLGPKFMKDNGL 230 (254)
Q Consensus 215 TkYPnLarkyf~~~Gi 230 (254)
+-....+..+|.+.++
T Consensus 137 ~v~~~~~~~~~~~~~~ 152 (263)
T 1mqi_A 137 TLDSGSTKEFFRRSKI 152 (263)
T ss_dssp CBSSSHHHHHHHHCCS
T ss_pred EEeccHHHHHHHhccc
Confidence 5444555566666543
No 76
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=73.62 E-value=1.4 Score=38.27 Aligned_cols=56 Identities=16% Similarity=0.205 Sum_probs=44.4
Q ss_pred eEEEecCCCCChHHHHH-HHHhCCCccCCCCCCceEeecCCCCCeEEEeec--CcchhhhhhcCceeeeeeccceee
Q 025329 84 IRLGLPSKGRMAADTLD-LLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQR--PKDIVRKLLSGDLDLGIVGLDTVS 157 (254)
Q Consensus 84 LrIALPsKGRL~e~tl~-LL~~aGi~v~~~~~R~L~~~~~~~p~iev~~vR--p~DIp~yV~~G~aDlGIvG~DvL~ 157 (254)
=|||+|.+|...+-.++ +|++.|++ +++.++. +.|+...+..|.+|.+++...++.
T Consensus 97 K~Iav~~~gs~~~~ll~~~L~~~Gld------------------v~~~~~~~~~~~~~~al~~G~vDa~~~~eP~~~ 155 (283)
T 3hn0_A 97 PALYVFGNGTTPDILTRYYLGRQRLD------------------YPLNYAFNTAGEITQGILAGKVNRAVLGEPFLS 155 (283)
T ss_dssp CCEECSSTTSHHHHHHHHHHHHHTCC------------------CCEECSCCSHHHHHHHHHHTSCSEEEECTTHHH
T ss_pred CEEEecCCCCcHHHHHHHHHHHcCCc------------------eEEEEccCCHHHHHHHHHcCCCCEEEecccHHH
Confidence 37999988988888777 47888871 3344554 799999999999999999887755
No 77
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=71.49 E-value=3.2 Score=35.70 Aligned_cols=94 Identities=15% Similarity=0.193 Sum_probs=59.2
Q ss_pred eEEEeecCcchhhhhhcCc-eeeeeecc-ce---eecccCCCcceeeecCCCCcccEEEEEEEeCCCcc--ccccchHHh
Q 025329 127 LEVWFQRPKDIVRKLLSGD-LDLGIVGL-DT---VSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIF--ENINSLREL 199 (254)
Q Consensus 127 iev~~vRp~DIp~yV~~G~-aDlGIvG~-Dv---L~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~--~dv~sl~dL 199 (254)
+++.+--..++-..++.|. +|+.+.+. ++ +.+.+. +..-..-.|..-+|++++|.+... .++++ +||
T Consensus 52 V~~~~~~Sg~l~~qi~~g~~~DV~~sa~~~~~~~l~~~gl-----~~~~~~~~~a~~~lvl~~~~~~~~~~~~i~~-~dl 125 (253)
T 3gzg_A 52 VRVSYAASSALARQIEQGAPADVFLSADLEWMDYLQQHGL-----VLPAQRHNLLGNTLVLVAPASSKLRVDPRAP-GAI 125 (253)
T ss_dssp EEEEEECHHHHHHHHHTTCCCSEEECSSHHHHHHHHHTTS-----SCGGGEEEEEEECEEEEEETTCCCCCCTTST-THH
T ss_pred EEEEECChHHHHHHHHcCCCceEEEECCHHHHHHHHHCCC-----cCCCcceeEEeeEEEEEEECCCCcccCCCCH-HHH
Confidence 5566666778889999997 99999975 32 233332 100001356777899999998532 35776 555
Q ss_pred hcCCcccCCCCcEEEcCCCcc------HHHHHHHcCC
Q 025329 200 AQMPQWTAEKPLRVATGFTYL------GPKFMKDNGL 230 (254)
Q Consensus 200 ~~~~~~~~~r~lRVATkYPnL------arkyf~~~Gi 230 (254)
.... . ...|||+-.|+. +.++|++.|+
T Consensus 126 ~~l~---~-~~~~iai~dP~~~p~G~~a~~~l~~~g~ 158 (253)
T 3gzg_A 126 AKAL---G-ENGRLAVGQTASVPAGSYAAAALRKLGQ 158 (253)
T ss_dssp HHHT---T-TTCCEEEECTTTSHHHHHHHHHHHHTTC
T ss_pred HHhh---c-CCCEEEEeCCCCCchHHHHHHHHHHcCc
Confidence 4210 0 136899988863 5677777775
No 78
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=71.14 E-value=4.5 Score=33.04 Aligned_cols=92 Identities=18% Similarity=0.231 Sum_probs=51.3
Q ss_pred EEEeecCcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCccccccchHHhhcCCcccC
Q 025329 128 EVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTA 207 (254)
Q Consensus 128 ev~~vRp~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~~ 207 (254)
++..+.-..+-..+..|.+|+.+.|.-.-.|.... +. .-+--|..-..++.+..+ -..+++++||.
T Consensus 52 ~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~eR~~~----~~-fs~p~~~~~~~~~~~~~~--~~~~~~~~dL~------- 117 (243)
T 4gvo_A 52 KFKTMDFSNLLVSLGAGKVDIVAHQMEKSKEREKK----FL-FNDVAYNNFPLQLTVLDS--NNSINSTKDLA------- 117 (243)
T ss_dssp EEEECCGGGHHHHHHTTSCSEECSCCBCCHHHHHH----SE-ECSSCCEECCEEEEEETT--CCSCSSGGGGT-------
T ss_pred EEEECCHHHHHHHHHCCCCCEecccCCCCHHHhhh----hh-hhhhhcccccceEEEecc--ccccCchHHhc-------
Confidence 34444446778899999999988775443443211 10 011112222334444444 24678888885
Q ss_pred CCCcEEEcC----CCccHHHHHHHcCCceEEEE
Q 025329 208 EKPLRVATG----FTYLGPKFMKDNGLKHVVFS 236 (254)
Q Consensus 208 ~r~lRVATk----YPnLarkyf~~~Gi~~veIi 236 (254)
++||++- |....+++.++++.+ ++++
T Consensus 118 --g~~v~v~~gs~~~~~~~~~~~~~~~~-~~~~ 147 (243)
T 4gvo_A 118 --GKRVITSATSNGALVLKKINEEQGNN-FEIA 147 (243)
T ss_dssp --TCEEEECTTCHHHHHHHHHHHHTTSC-SEEE
T ss_pred --CCeEEEecCchHHHHHHHHHHhcccc-ceec
Confidence 4688754 344556666667764 4544
No 79
>4ib2_A Putative lipoprotein; putative methionine-bindning, NLPA lipoprotein, PF03180 FAMI structural genomics, joint center for structural genomics; 1.76A {Ruminococcus gnavus}
Probab=70.68 E-value=5.2 Score=35.66 Aligned_cols=76 Identities=16% Similarity=0.132 Sum_probs=57.1
Q ss_pred eEEEecCCCCChHHHHHHHHhCCC-ccCCCCC----CceEeecCCCCCeEEEeecCcchhhhhhcCceeeeeeccceeec
Q 025329 84 IRLGLPSKGRMAADTLDLLKDCQL-SVKQVNP----RQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSE 158 (254)
Q Consensus 84 LrIALPsKGRL~e~tl~LL~~aGi-~v~~~~~----R~L~~~~~~~p~iev~~vRp~DIp~yV~~G~aDlGIvG~DvL~E 158 (254)
=+||+|+...-..-.+.||+++|+ +++.... -.-+... -.+++|.-+.+..+|+-+. .+|+.++-.++..+
T Consensus 110 a~IAipnd~sN~~RaL~lL~~aGLIkLk~~~~~~~t~~DI~~N--pk~lk~~el~aaql~r~l~--dvD~avin~n~a~~ 185 (252)
T 4ib2_A 110 DKIAVPNDTTNEARALLLLQDNGIITLKDGAGLNATVNDIEEN--PYNVEIVELEAAQVARVTG--ETAYVVLNGNYALE 185 (252)
T ss_dssp CEEEEECSHHHHHHHHHHHHHTTSCEECTTCGGGCCGGGEEEC--TTCCEEEEECGGGGGGGTT--TSSEEEECHHHHHH
T ss_pred CEEEeeCCCCHHHHHHHHHHHCCCEEecCCCCCCCCHHHHhcC--CCCcEEEEcCHHHHHhhhc--cCCEEEEchhHHHH
Confidence 479999777667778899999997 4443211 1113332 2468999999999999985 58999999999999
Q ss_pred ccCCC
Q 025329 159 FGQGN 163 (254)
Q Consensus 159 ~~~d~ 163 (254)
.+.+.
T Consensus 186 agl~p 190 (252)
T 4ib2_A 186 AGYSV 190 (252)
T ss_dssp TTCCH
T ss_pred cCCCC
Confidence 98874
No 80
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=70.31 E-value=1.8 Score=37.55 Aligned_cols=118 Identities=15% Similarity=0.088 Sum_probs=67.5
Q ss_pred CCCceEEEecCCCCChHHHHHHHHhCCCccCCCCCCceEeecCCCCCeEEEee-cCcchhhhhhcCceeeeeecccee--
Q 025329 80 ERDEIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQ-RPKDIVRKLLSGDLDLGIVGLDTV-- 156 (254)
Q Consensus 80 ~~~~LrIALPsKGRL~e~tl~LL~~aGi~v~~~~~R~L~~~~~~~p~iev~~v-Rp~DIp~yV~~G~aDlGIvG~DvL-- 156 (254)
+...||||.+ ||=-.-....++++.+.. .+. ++++... -+.++-..+..|.+|+|+++.+..
T Consensus 3 ~~~~irvg~~-~~~~~~~~~~~~~~~~~~-------------~g~-~v~~~~~~~~~~~~~al~~G~~D~~~~~~~~~~~ 67 (283)
T 3hn0_A 3 EDTVIKVSVL-RGPSVIAFADWLENPPII-------------DNK-KVQVKVVDSPDLAQALLIKQETDIAVLPMINAAN 67 (283)
T ss_dssp -CCEEEEEEE-SSTHHHHTHHHHHSCCEE-------------TTE-EEEEEEESCHHHHHHHHHTTCCSEEEEEHHHHHH
T ss_pred CcceEEEEec-CCCcHHHHHHHHhccccc-------------cCc-cEEEEEeCCHHHHHHHHHCCCCCEEEEcHHHHHH
Confidence 4457999999 786444555555554321 111 2444433 456788899999999999997743
Q ss_pred -ecccCCCcceeeecCCCCcccEEEEEEEeCCCccccccchHHhhcCCcccCCCCcEEEcCCCc-----cHHHHHHHcCC
Q 025329 157 -SEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFTY-----LGPKFMKDNGL 230 (254)
Q Consensus 157 -~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~~~r~lRVATkYPn-----Larkyf~~~Gi 230 (254)
..++.+. .++- -...|.. .+..+++ | +++|||+-.+. +.+.++++.|+
T Consensus 68 ~~~~g~~~-~i~~---~~~~g~~--~lv~~~~-----------L---------kGK~Iav~~~gs~~~~ll~~~L~~~Gl 121 (283)
T 3hn0_A 68 LYNKGIKI-KLAG---CPIWGTL--YLVEKTP-----------L---------KEPALYVFGNGTTPDILTRYYLGRQRL 121 (283)
T ss_dssp HHHTTCSC-EEEE---EEECCCC--EEEECSS-----------C---------CSCCEECSSTTSHHHHHHHHHHHHHTC
T ss_pred HHHCCCCe-EEEE---EecccEE--EEEecCC-----------C---------CCCEEEecCCCCcHHHHHHHHHHHcCC
Confidence 3444331 1111 1122321 2222211 2 35799965443 45667888999
Q ss_pred ceEEEEEcC
Q 025329 231 KHVVFSTAD 239 (254)
Q Consensus 231 ~~veIi~l~ 239 (254)
+++++.+.
T Consensus 122 -dv~~~~~~ 129 (283)
T 3hn0_A 122 -DYPLNYAF 129 (283)
T ss_dssp -CCCEECSC
T ss_pred -ceEEEEcc
Confidence 58888765
No 81
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=70.00 E-value=13 Score=31.50 Aligned_cols=91 Identities=13% Similarity=0.132 Sum_probs=53.4
Q ss_pred CCeEEEe--ecCcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCccc-cccchHHhhc
Q 025329 125 SNLEVWF--QRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFE-NINSLRELAQ 201 (254)
Q Consensus 125 p~iev~~--vRp~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~-dv~sl~dL~~ 201 (254)
|++++.+ ....++...|.+|.+|+||+..... ..++. ...++..++++++|.+.+.. +.-+++||.+
T Consensus 132 P~v~l~l~~~~~~~~~~~l~~g~~Dl~i~~~~~~------~~~l~----~~~l~~~~~~~v~~~~hpl~~~~i~~~dL~~ 201 (315)
T 1uth_A 132 PHIQISTLRPNAGNLKEDMESGAVDLALGLLPEL------QTGFF----QRRLFRHRYVCMFRKDHPSAKSPMSLKQFSE 201 (315)
T ss_dssp TTCEEEEECTTSSCHHHHHHHTSCCEEEECCTTC------CTTEE----EEEEEEECEEEEEETTCSSCCSSCCHHHHHH
T ss_pred CCcEEEEEeCCcccHHHHHHCCCCCEEEecCCCC------CCCce----EEEeeccceEEEEeCCCCCcCCCCCHHHHhc
Confidence 4444443 3457899999999999999864321 11222 13456778888888874322 2335788764
Q ss_pred CCcccCCCCcEEE--cCCCccHHHHHHHcCCc
Q 025329 202 MPQWTAEKPLRVA--TGFTYLGPKFMKDNGLK 231 (254)
Q Consensus 202 ~~~~~~~r~lRVA--TkYPnLarkyf~~~Gi~ 231 (254)
.+- +.+. ..+.....++|++.|+.
T Consensus 202 ~~~------i~~~~~~~~~~~~~~~~~~~g~~ 227 (315)
T 1uth_A 202 LEH------VGVVALNTGHGEVDGLLERAGIK 227 (315)
T ss_dssp SEE------EEECCTTSGGGGHHHHHHHTTCC
T ss_pred CCe------EEEecCCCCCCchhHHHHhcCCC
Confidence 211 0111 11223567788888874
No 82
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=69.24 E-value=18 Score=31.41 Aligned_cols=66 Identities=15% Similarity=0.151 Sum_probs=48.4
Q ss_pred CCCCCC-CceEEEecCCCCChHHHHH-HHHhCCCccCCCCCCceEeecCCCCCeEEEeecCcchhhhhhcCceeeeeecc
Q 025329 76 NRISER-DEIRLGLPSKGRMAADTLD-LLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGL 153 (254)
Q Consensus 76 ~~~~~~-~~LrIALPsKGRL~e~tl~-LL~~aGi~v~~~~~R~L~~~~~~~p~iev~~vRp~DIp~yV~~G~aDlGIvG~ 153 (254)
.++.+. .--|||++..|...+-.++ +|++.|++.. ++++..+.+.+...-+..|.+|..++..
T Consensus 146 ~s~~DL~kGk~i~v~~~~s~~~~~~~~~l~~~Gl~~~---------------dv~~~~~~~~~~~~al~~G~vDa~~~~~ 210 (341)
T 3un6_A 146 NEFNNNGDDYHFGIPHRYSTHYLLLEELRKQLKIKPG---------------HFSYHEMSPAEMPAALSEHRITGYSVAE 210 (341)
T ss_dssp GGCCSSSSCEEEEESCSSSHHHHHHHHHHHHTTCCTT---------------SEEEEECCGGGHHHHHHTTSCSEEEEET
T ss_pred CCHHHhCCCCEEEECCCCCHHHHHHHHHHHHcCCCHH---------------HeEEEEcChHHHHHHHHcCCCCEEEecC
Confidence 345565 5579999954555555554 8999998531 3566666778999999999999999877
Q ss_pred cee
Q 025329 154 DTV 156 (254)
Q Consensus 154 DvL 156 (254)
-+.
T Consensus 211 p~~ 213 (341)
T 3un6_A 211 PFG 213 (341)
T ss_dssp THH
T ss_pred CHH
Confidence 654
No 83
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=68.83 E-value=5.3 Score=34.10 Aligned_cols=67 Identities=21% Similarity=0.294 Sum_probs=42.2
Q ss_pred CCeEEEe--ecCcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCcccc---c-cchHH
Q 025329 125 SNLEVWF--QRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFEN---I-NSLRE 198 (254)
Q Consensus 125 p~iev~~--vRp~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~d---v-~sl~d 198 (254)
|++++.+ ....|+...+.+|.+|+||+..+. . ..++. -..++..++++++|.+.++.. . -+++|
T Consensus 117 P~v~l~l~~~~~~~~~~~l~~g~~Dlai~~~~~-~-----~~~l~----~~~L~~~~~~~v~~~~hpl~~~~~~~i~~~d 186 (313)
T 2h98_A 117 PEIHIELIECGTKDQINALKQGKIDLGFGRLKI-T-----DPAIR----RIMLHKEQLKLAIHKHHHLNQFAATGVHLSQ 186 (313)
T ss_dssp TTSEEEEEECCHHHHHHHHHHTSCSEEEESSCC-C-----CTTEE----EEEEEEEEEEEEEETTSGGGGGTTSCBCGGG
T ss_pred CCeEEEEEeCChHHHHHHHHcCCCCEEEEeCCC-C-----CCCee----EEEeeeCcEEEEEcCCCcccccCCCCcCHHH
Confidence 4444443 345789999999999999986432 1 11232 234677889999888743322 1 45777
Q ss_pred hhc
Q 025329 199 LAQ 201 (254)
Q Consensus 199 L~~ 201 (254)
|.+
T Consensus 187 L~~ 189 (313)
T 2h98_A 187 IID 189 (313)
T ss_dssp GTT
T ss_pred HcC
Confidence 753
No 84
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=68.56 E-value=11 Score=30.69 Aligned_cols=96 Identities=16% Similarity=0.253 Sum_probs=60.8
Q ss_pred EEeecCcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCccccccchHHhhcCCcccCC
Q 025329 129 VWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAE 208 (254)
Q Consensus 129 v~~vRp~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~~~ 208 (254)
+..+.-..+...+..|.+|+.+.|.-.--|.... +.. --.|-....++.+..+.. ..+++++||.
T Consensus 58 ~~~~~~~~~~~~l~~g~~d~~~~~~~~t~eR~~~----~~f--s~py~~~~~~~~v~~~~~-~~~~~~~dl~-------- 122 (243)
T 4h5g_A 58 ILSMSFDNVLTSLQTGKADLAVAGISATDERKEV----FDF--SIPYYENKISFLVHKADV-EKYKDLTSLE-------- 122 (243)
T ss_dssp EEECCGGGHHHHHHTTSCSEECSSCBCCHHHHTT----EEE--CSCSBCCCEEEEEEGGGT-TTCCSHHHHH--------
T ss_pred EecccHHHHHHHHHcCCCCcccccccCChhHccE----EEc--cCccccCccccccccccc-ccccccccCC--------
Confidence 3344446788889999999998876554444321 211 124555566666665432 4577888886
Q ss_pred CCcEEEcCCCccHHHHHHHcCCceEEEEEcCCc
Q 025329 209 KPLRVATGFTYLGPKFMKDNGLKHVVFSTADGA 241 (254)
Q Consensus 209 r~lRVATkYPnLarkyf~~~Gi~~veIi~l~GS 241 (254)
++|||...-.....+++++.-+ .+++.....
T Consensus 123 -g~~i~v~~g~~~~~~l~~~~~~-~~i~~~~~~ 153 (243)
T 4h5g_A 123 -SANIAAQKGTVPESMVKEQLPK-AQLTSLTNM 153 (243)
T ss_dssp -TSEEEEETTSHHHHHHHHHCTT-SEEEEESCH
T ss_pred -CCEEEecCCcHHHHHHHHhccc-ceeEEeCCH
Confidence 4688887767778888776543 566655543
No 85
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=68.23 E-value=7.4 Score=32.19 Aligned_cols=86 Identities=19% Similarity=0.202 Sum_probs=48.0
Q ss_pred EEEeecCcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcc-cEEEEEEEeCCCccc--cccchHHhhcCCc
Q 025329 128 EVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYG-DCRLSLAIPKYGIFE--NINSLRELAQMPQ 204 (254)
Q Consensus 128 ev~~vRp~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG-~CRLvVAvP~~~~~~--dv~sl~dL~~~~~ 204 (254)
++......++...+.+|.+|+||+..+... .++.. ..++ ..++++++|.+.++. +.-+++||...+
T Consensus 127 ~l~~~~~~~~~~~l~~g~~Dl~i~~~~~~~------~~l~~----~~l~~~~~~~~v~~~~~pl~~~~~~~~~dL~~~~- 195 (306)
T 3fzv_A 127 RIRDGEQQELVQGLTSGRFDLAFLYEHDLD------STIET----EPLMPPQRPHALLPEGHRFAGQAQVSLRDLCLEP- 195 (306)
T ss_dssp EEEEECHHHHHHHHHHTSCSEEEECSSSCC------TTEEE----EESSCCBCCEEEEETTCTTTTSSEECHHHHTTSC-
T ss_pred EEEeCCHHHHHHHHHCCCccEEEEeccccc------cccce----eeeeeccccEEEecCCCcccCCCCCCHHHHcCCC-
Confidence 344445677889999999999998643211 12221 1233 455566677664322 223678886431
Q ss_pred ccCCCCcEEEcCC---CccHHHHHHHcCCc
Q 025329 205 WTAEKPLRVATGF---TYLGPKFMKDNGLK 231 (254)
Q Consensus 205 ~~~~r~lRVATkY---PnLarkyf~~~Gi~ 231 (254)
-|.... .....++|++.|+.
T Consensus 196 -------~i~~~~~~~~~~~~~~~~~~g~~ 218 (306)
T 3fzv_A 196 -------MILLDVQPSRTYFVSLFEELGLT 218 (306)
T ss_dssp -------EEEECCTTHHHHHHHHHHHTTCC
T ss_pred -------EEEecCCcchHHHHHHHHHcCCC
Confidence 122211 13445677888874
No 86
>2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase; HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A
Probab=67.71 E-value=3.9 Score=36.92 Aligned_cols=50 Identities=12% Similarity=0.098 Sum_probs=34.9
Q ss_pred EEEEEeCCCccccccchHHhhcCCcccCCCCcEEEcCCC----------c--------------------cHHHHHHHcC
Q 025329 180 LSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFT----------Y--------------------LGPKFMKDNG 229 (254)
Q Consensus 180 LvVAvP~~~~~~dv~sl~dL~~~~~~~~~r~lRVATkYP----------n--------------------Larkyf~~~G 229 (254)
..+.++++ .+|++++||+ ++|||+.-+ + ..+.++++.|
T Consensus 101 ~~i~v~~d---s~I~s~~DLk---------Gk~Igv~~~~~~~~~gs~~~~~~~~~~~~~~~~~gs~~~~~~~~~L~~~G 168 (365)
T 2de3_A 101 QGFFVRDD---SPITAAADLA---------GRRIGVSASAIRILRGQLGDYLELDPWRQTLVALGSWEARALLHTLEHGE 168 (365)
T ss_dssp EEEEEETT---CSCCSGGGGT---------TCEEEECHHHHHHHHTCCTTGGGSCHHHHHHHHTTHHHHHHHHHHHHHTT
T ss_pred ceEEECCC---CCCCCHHHhC---------CCeEEeecccccccCCCcccccccchhhhhhhccchhhHHHHHHHHHHcC
Confidence 34556766 4688999986 478987531 1 2678999999
Q ss_pred C--ceEEEEEcCCc
Q 025329 230 L--KHVVFSTADGA 241 (254)
Q Consensus 230 i--~~veIi~l~GS 241 (254)
+ ++++++.+...
T Consensus 169 l~~~dv~~v~~~~~ 182 (365)
T 2de3_A 169 LGVDDVELVPISSP 182 (365)
T ss_dssp CCGGGSEEEECCCT
T ss_pred CCHHHeEEEECCCc
Confidence 8 35888887653
No 87
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=67.48 E-value=6.3 Score=30.41 Aligned_cols=89 Identities=17% Similarity=0.166 Sum_probs=49.3
Q ss_pred CCeEEEe--ecCcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCccc--c-ccchHHh
Q 025329 125 SNLEVWF--QRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFE--N-INSLREL 199 (254)
Q Consensus 125 p~iev~~--vRp~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~--d-v~sl~dL 199 (254)
|++++.+ ....++-..|.+|.+|+||+.... . . .++. -..++.-+++++++.+.++. + .-+++||
T Consensus 32 P~i~i~l~~~~~~~l~~~l~~g~~Dl~i~~~~~-~--~---~~l~----~~~l~~~~~~~v~~~~hpl~~~~~~~~~~~l 101 (209)
T 2ql3_A 32 PRASVEFREDTQNRLRTQLEGGELDVAIVYDLD-L--S---PEWQ----TVPLMTREPMVVLGAEHPLAGVDGPVRLADL 101 (209)
T ss_dssp TTEEEEEEECCHHHHHHHHHTTSCSEEEEESSS-C--C---TTEE----EEEEEEECCEEEEETTCGGGGCCSCBCGGGG
T ss_pred CCceEEEEECcHHHHHHHHHcCCccEEEEecCC-C--C---CCce----EEEeecCceEEEEeCCCccccCCCCcCHHHH
Confidence 4444443 345678889999999999986421 1 1 1222 12355667788887763221 2 2356777
Q ss_pred hcCCcccCCCCcEEEcC---CCccHHHHHHHcCCc
Q 025329 200 AQMPQWTAEKPLRVATG---FTYLGPKFMKDNGLK 231 (254)
Q Consensus 200 ~~~~~~~~~r~lRVATk---YPnLarkyf~~~Gi~ 231 (254)
.+. +. |... +.....++|++.|+.
T Consensus 102 ~~~-------~~-i~~~~~~~~~~~~~~~~~~g~~ 128 (209)
T 2ql3_A 102 AEH-------PM-VLLDAPPSTNHAMDVCREAGFA 128 (209)
T ss_dssp TTS-------CE-EEECCTTHHHHHHHHHHHHTCC
T ss_pred hCC-------CE-EeeCChhHHHHHHHHHHHcCCC
Confidence 532 11 2211 113345678888874
No 88
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=66.87 E-value=4.8 Score=33.81 Aligned_cols=32 Identities=9% Similarity=0.203 Sum_probs=23.7
Q ss_pred eEEEeecCcchhhhhhcCceeeeeeccceeec
Q 025329 127 LEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSE 158 (254)
Q Consensus 127 iev~~vRp~DIp~yV~~G~aDlGIvG~DvL~E 158 (254)
+++.+.-+.++...+..|.+|+|+++...+.+
T Consensus 40 ve~~~~~~~~~~~~l~~G~~D~~~~~~~~~~~ 71 (280)
T 1zbm_A 40 IEHVIEDIETLNRKAFNAEYEVTAISAHAYAL 71 (280)
T ss_dssp EEEEECCHHHHHHHGGGTCCSEEEEEHHHHTT
T ss_pred EEEEeCCHHHHHHHHHcCCCCEEEECHHHHHH
Confidence 55555566777888999999999986554443
No 89
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=66.78 E-value=10 Score=34.63 Aligned_cols=100 Identities=11% Similarity=0.089 Sum_probs=53.6
Q ss_pred cchhhhhhcCc----eeeeeecccee--eccc----CCCcceeeecCCCCcccEEEEEEEeCCCccccc-cchHHhhcCC
Q 025329 135 KDIVRKLLSGD----LDLGIVGLDTV--SEFG----QGNEDLIIVHDALDYGDCRLSLAIPKYGIFENI-NSLRELAQMP 203 (254)
Q Consensus 135 ~DIp~yV~~G~----aDlGIvG~DvL--~E~~----~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv-~sl~dL~~~~ 203 (254)
.++...+..|. +|++++|.++. .-.+ ....++..+. .+.... -.+.++++..-..+ +++++|...
T Consensus 74 ~~~~~al~~G~~~~giD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g--~~i~v~~~~~~~~i~~s~~~l~~~- 149 (417)
T 2g29_A 74 GTTRDNLVLGSASGGIDGAHILTPMPYLITMGTVTDGKPTPMYILA-RLNVNG--QGIQLGNNYKDLKVGTDAAPLKEA- 149 (417)
T ss_dssp HHHHHHHHHCGGGTSCSEEEEETHHHHHHHHCTTSSSCCCCEEEEE-ECCBSC--EEEEECGGGGGGCCCSCCTTHHHH-
T ss_pred HHHHHHHHCCCCcCCcCeEeecchHHHHHHhCcccCCCCCCEEEEE-EeccCC--eEEEEecchhhccccCCHHHHHHH-
Confidence 56788999999 99999976632 2111 1112233221 233222 23445554211135 565333210
Q ss_pred cccCCCCcEEEcCCCc-----cHHHHHHHcCCc---eEEEEEcC
Q 025329 204 QWTAEKPLRVATGFTY-----LGPKFMKDNGLK---HVVFSTAD 239 (254)
Q Consensus 204 ~~~~~r~lRVATkYPn-----Larkyf~~~Gi~---~veIi~l~ 239 (254)
....+++|||..++. +.+.+|++.|++ +|+++.+.
T Consensus 150 -~~dLkGk~iav~~~gs~~~~~l~~~L~~~Gl~~~~dv~~v~~~ 192 (417)
T 2g29_A 150 -FAKVTDPKVAMTFPGGTHDMWIRYWLAAGGMEPGKDFSTIVVP 192 (417)
T ss_dssp -HHTSSSCEEEESSTTSHHHHHHHHHHHHTTCCBTTTBEEEECC
T ss_pred -HHhcCCCEEEEeCCCCHHHHHHHHHHHHcCCCCCCceEEEECC
Confidence 001126899988764 345678888984 58888763
No 90
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=64.59 E-value=18 Score=28.66 Aligned_cols=65 Identities=15% Similarity=0.052 Sum_probs=42.1
Q ss_pred eEEEeecCcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCccc-cccchHHhhc
Q 025329 127 LEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFE-NINSLRELAQ 201 (254)
Q Consensus 127 iev~~vRp~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~-dv~sl~dL~~ 201 (254)
+++......++-..|.+|.+|+||+.... . ..++. -..++..++++++|.+.+.. ..-+++||..
T Consensus 50 l~~~~~~~~~~~~~l~~g~~Dl~i~~~~~---~---~~~~~----~~~l~~~~~~~v~~~~hpl~~~~i~~~dL~~ 115 (241)
T 3oxn_A 50 FNFLPLQHDRLSDQLTYEGADLAICRPTG---P---VEPLR----SEILGRVGVLCLLSKQHPLANQEMSLDDYLS 115 (241)
T ss_dssp EEEEECCGGGHHHHHHTSCCSEEEECCSS---C---CTTEE----EEEEECCCEEEEEETTSGGGGSCCCHHHHHT
T ss_pred EEEEECCcccHHHHHHcCCCCEEEecCCC---C---Cccce----eEEeecccEEEEEeCCCCcccCCCCHHHHhc
Confidence 44445566888999999999999996432 1 12222 23456788899988874322 2336778864
No 91
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=64.16 E-value=12 Score=34.22 Aligned_cols=63 Identities=10% Similarity=0.082 Sum_probs=48.9
Q ss_pred CCCceEEEecCCCCChHHHHH-HHHhCCCccCCCCCCceEeecCCCCCeEEEeecCcchhhhhhcCceeeeeecccee
Q 025329 80 ERDEIRLGLPSKGRMAADTLD-LLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTV 156 (254)
Q Consensus 80 ~~~~LrIALPsKGRL~e~tl~-LL~~aGi~v~~~~~R~L~~~~~~~p~iev~~vRp~DIp~yV~~G~aDlGIvG~DvL 156 (254)
+..--|||++..|...+-.++ +|++.|++.. .+++++.+.+.++..-+..|.+|..+++.-+.
T Consensus 152 dLkGk~iav~~~gs~~~~~l~~~L~~~Gl~~~--------------~dv~~v~~~~~~~~~aL~~G~vDa~~~~eP~~ 215 (417)
T 2g29_A 152 KVTDPKVAMTFPGGTHDMWIRYWLAAGGMEPG--------------KDFSTIVVPPAQMVANVKVNAMESFCVGEPWP 215 (417)
T ss_dssp TSSSCEEEESSTTSHHHHHHHHHHHHTTCCBT--------------TTBEEEECCGGGHHHHHHTTSCSEEEEETTHH
T ss_pred hcCCCEEEEeCCCCHHHHHHHHHHHHcCCCCC--------------CceEEEECCHHHHHHHHHcCCCCEEEeCCCHH
Confidence 344579999867888776665 7899998531 13667777788999999999999999987764
No 92
>2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC transporter, periplasmic SO binding protein, bicarbonate-binding protein; 1.35A {Synechocystis SP} PDB: 2i48_A 2i4b_A 2i4c_A
Probab=58.61 E-value=10 Score=35.21 Aligned_cols=60 Identities=8% Similarity=0.061 Sum_probs=47.1
Q ss_pred ceEEEecCCCCChHHHHH-HHHhCCCccCCCCCCceEeecCCCCCeEEEeecCcchhhhhhcCceeeeeecccee
Q 025329 83 EIRLGLPSKGRMAADTLD-LLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTV 156 (254)
Q Consensus 83 ~LrIALPsKGRL~e~tl~-LL~~aGi~v~~~~~R~L~~~~~~~p~iev~~vRp~DIp~yV~~G~aDlGIvG~DvL 156 (254)
.+|||++.+|...+-.+. +|++.||+.. .+++++.+.+.+++.-+..|.+|..+++.-|.
T Consensus 163 ~~~Iav~~~gs~~~~~l~~~L~~~Gl~p~--------------~DV~~v~~~~~~~~~aL~~G~iDa~~~~eP~~ 223 (429)
T 2i49_A 163 KFKAAHTFPNVNQDFWIRYWFAAGGVDPD--------------TDIDLLAVPPAETVQGMRNGTMDAFSTGDPWP 223 (429)
T ss_dssp CCEEEESSTTSHHHHHHHHHHHHTTCCTT--------------TTSEEEECCHHHHHHHHHHTCCCEEEEETTHH
T ss_pred CcEEEEeCCCCHHHHHHHHHHHhcCCCCC--------------CcEEEEECChHHHHHHHHcCCccEEEeccchH
Confidence 479999877888766554 7889998531 13566677788999999999999999997775
No 93
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A
Probab=57.76 E-value=10 Score=33.36 Aligned_cols=50 Identities=18% Similarity=0.005 Sum_probs=32.3
Q ss_pred ccccchHHhhcCCcccCCCCcEEEcCCCccHHHHHHHcCCceEEEEEcCCceecccCC--Ccccc
Q 025329 191 ENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAV--RITHL 253 (254)
Q Consensus 191 ~dv~sl~dL~~~~~~~~~r~lRVATkYPnLarkyf~~~Gi~~veIi~l~GSvElAP~l--GlADa 253 (254)
..|++++||+ ++||.|-.-.+..++|+..|.+ .+.+.. -|+...+ |..|+
T Consensus 130 ~pI~s~~Dlk---------G~KiR~~~~~~~~~~~~~lGa~---pv~m~~-~Evy~ALq~G~VDg 181 (316)
T 2vpn_A 130 EPITSPEDFD---------NKKIRTMTNPLLAETYKAFGAT---PTPLPW-GEVYGGLQTGIIDG 181 (316)
T ss_dssp SCCCSGGGGT---------TCEEEECSCHHHHHHHHHHTCE---EEECCG-GGHHHHHHHTSCSE
T ss_pred CCCCChHHhC---------CCEEEeCCCHHHHHHHHHcCCe---eeecCH-HHHHHHHHcCCcce
Confidence 4689999986 4677764445778999999973 344432 3555444 55543
No 94
>4ecf_A ABC-type phosphate transport system, periplasmic; ABC transporter, phosphate transport receptor; HET: MSE; 1.55A {Lactobacillus brevis}
Probab=57.62 E-value=13 Score=31.77 Aligned_cols=97 Identities=11% Similarity=0.128 Sum_probs=56.5
Q ss_pred eEEEeecCcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCccccccchHHhhcC----
Q 025329 127 LEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQM---- 202 (254)
Q Consensus 127 iev~~vRp~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~---- 202 (254)
+++......++...+.+|.+|+|++....-.+......++. ...++.-.|+++++.+.++..+ ++++|...
T Consensus 34 i~v~~~~S~~~~~~l~~g~~Dig~~~~~~~~~e~~~~~~l~----~~~i~~d~lvvvv~~~~p~~~l-t~~~L~~if~G~ 108 (264)
T 4ecf_A 34 INVQGGGTGTGLSQIQEGAVQIGNSDLFAGEQKGINARQLV----DHRVAVVGITPIVNKKVGVKNL-STNQLIKIFTGQ 108 (264)
T ss_dssp EEEEEECHHHHHHHHHHTSSSEEEESSCGGGSTTCCGGGEE----CCEEEEEEEEEEECTTSSCSEE-CHHHHHHHHTTS
T ss_pred EEEEeCCCHHHHHHHHcCCCchhhccCCCChhHHhhccCCE----EEEEEEEEEEEEEcCCCccccc-CHHHHHHHHCCC
Confidence 34455677899999999999999997543211111112233 4688889999999987544322 45666532
Q ss_pred -CcccC----CCCc-EEEcCCCccHHHHHHHc
Q 025329 203 -PQWTA----EKPL-RVATGFTYLGPKFMKDN 228 (254)
Q Consensus 203 -~~~~~----~r~l-RVATkYPnLarkyf~~~ 228 (254)
..|.. +.++ -|..+--.=|+++|++.
T Consensus 109 i~~W~~l~~~~~~i~~i~r~~gSgtr~~f~~~ 140 (264)
T 4ecf_A 109 ITNWKEVGGADQSIVLINRAQGSGTRATFEQF 140 (264)
T ss_dssp CCBGGGGTSCSCBCEEEEECTTCHHHHHHHHH
T ss_pred CcccccCCCCCCeeEEeccCCCCcHHHHHHHH
Confidence 12322 1222 34444434567777663
No 95
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=57.36 E-value=8.9 Score=30.08 Aligned_cols=67 Identities=25% Similarity=0.315 Sum_probs=41.6
Q ss_pred CCeEEEe--ecCcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCccc--cccchHHhh
Q 025329 125 SNLEVWF--QRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFE--NINSLRELA 200 (254)
Q Consensus 125 p~iev~~--vRp~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~--dv~sl~dL~ 200 (254)
|++++.+ ....++...|.+|.+|+||+.... .. .++. -..++..++++++|.+.++. ..-+++||.
T Consensus 32 P~v~l~l~~~~~~~~~~~l~~g~~Dl~i~~~~~---~~---~~l~----~~~l~~~~~~~v~~~~hpla~~~~i~~~dL~ 101 (219)
T 1i6a_A 32 PKLEMYLHEAQTHQLLAQLDSGKLDAVILALVK---ES---EAFI----EVPLFDEPMLLAIYEDHPWANREAVPMADLA 101 (219)
T ss_dssp TTEEEEEEECCHHHHHHHHHHTSCSEEEEECCG---GG---TTSE----EEEEEEEEEEEEEETTSGGGGCSCEEGGGGT
T ss_pred CCeEEEEEECChHHHHHHHHcCCeeEEEecCCC---CC---CCcc----eeeeecccEEEEEcCCCccccCCccCHHHhc
Confidence 4555544 366788999999999999985431 11 1122 12456788999998874322 223567765
Q ss_pred c
Q 025329 201 Q 201 (254)
Q Consensus 201 ~ 201 (254)
+
T Consensus 102 ~ 102 (219)
T 1i6a_A 102 G 102 (219)
T ss_dssp T
T ss_pred C
Confidence 3
No 96
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=55.62 E-value=25 Score=29.70 Aligned_cols=120 Identities=12% Similarity=0.118 Sum_probs=68.5
Q ss_pred CCCChHHHHHHHHhCCCccCCCCCCceEeecCCCCCeEEEeecCcchhhhhhcCceeeeeeccceeecccCCCcceeeec
Q 025329 91 KGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVH 170 (254)
Q Consensus 91 KGRL~e~tl~LL~~aGi~v~~~~~R~L~~~~~~~p~iev~~vRp~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l 170 (254)
+|---|=..++.++.|+++.-. ......... +....-..+-..+..|.+|+++.+.-.-.|.... +..
T Consensus 69 ~G~~vdll~~ia~~lg~~~~~~-----~~~~~~~g~--~~~~~w~~~~~~l~~g~~D~~~~~~~~t~eR~~~----~~f- 136 (294)
T 2rc8_A 69 YGYCIDLLEQLAEDMNFDFDLY-----IVGDGKYGA--WKNGHWTGLVGDLLSGTANMAVTSFSINTARSQV----IDF- 136 (294)
T ss_dssp ESHHHHHHHHHHHHHTEEEEEE-----ECTTCCCCC--EETTEECHHHHHHHHTSCSEECSSCBCCHHHHTT----SEE-
T ss_pred eEEhHHHHHHHHHHcCCcEEEE-----ECCCCcccc--cCCCCHHHHHHHHHCCCcCEEEeccccCHhHhce----EEE-
Confidence 5655555555666667755321 000000100 1122235677889999999998775544443221 211
Q ss_pred CCCCcccEEEEEEEeCCCccccccchHHhhcCCcccCCCCcEEEcCCCccHHHHHHHc
Q 025329 171 DALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDN 228 (254)
Q Consensus 171 ~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~~~r~lRVATkYPnLarkyf~~~ 228 (254)
--.|-...+++.++.+. ..+++++||+.. ....++|||+---.....||++.
T Consensus 137 -s~P~~~~~~~i~~~~~~--~~i~~~~dL~~~---~~~~g~~vg~~~gs~~~~~l~~~ 188 (294)
T 2rc8_A 137 -TSPFFSTSLGILVRTRG--TELSGIHDPKLH---HPSQGFRFGTVRESSAEDYVRQS 188 (294)
T ss_dssp -CSCSEEEEEEEEEETTS--CCCCSTTCHHHH---SCCTTCCEECBTTSHHHHHHHHH
T ss_pred -ccchHhcceEEEEECCC--CCcCChhhhhhc---CcccCeEEEEEcCChHHHHHHHH
Confidence 23677778888888763 346677777511 01125789998877788888765
No 97
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=54.22 E-value=31 Score=29.96 Aligned_cols=66 Identities=21% Similarity=0.226 Sum_probs=47.2
Q ss_pred cCCCCCCCceEEEecCCCCChHHH-HHHHHhCCCccCCCCCCceEeecCCCCCeEEEeecCcchhhhhhcCceeeeeecc
Q 025329 75 DNRISERDEIRLGLPSKGRMAADT-LDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGL 153 (254)
Q Consensus 75 ~~~~~~~~~LrIALPsKGRL~e~t-l~LL~~aGi~v~~~~~R~L~~~~~~~p~iev~~vRp~DIp~yV~~G~aDlGIvG~ 153 (254)
-.++.+..--|||++ +|...+.. ..+|++.|++.. ++++..+.+.++...+..|.+|..++..
T Consensus 111 i~s~~DLkGk~I~v~-~gs~~~~~~~~~l~~~Gl~~~---------------~v~~v~~~~~~~~~al~~G~vDa~~~~~ 174 (348)
T 3uif_A 111 AKSIKDLKGKKIALH-RGRPWELAFSNLLQSEGLTFK---------------DFKIVNVNPQVGAAALASGTVDGFFSLF 174 (348)
T ss_dssp CCSGGGGTTSEEEEC-TTSTHHHHHHHHHHHTTCCGG---------------GSEEECCCHHHHHHHHHHTSSSEEEEST
T ss_pred CCCHHHcCCCEEEec-CCChHHHHHHHHHHHcCCCHH---------------HeEEEECCHHHHHHHHHcCCCCEEEech
Confidence 344555555699998 78886554 567899998532 2344444567899999999999999876
Q ss_pred cee
Q 025329 154 DTV 156 (254)
Q Consensus 154 DvL 156 (254)
.++
T Consensus 175 ~~~ 177 (348)
T 3uif_A 175 DSY 177 (348)
T ss_dssp THH
T ss_pred HHH
Confidence 654
No 98
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=49.94 E-value=13 Score=33.24 Aligned_cols=99 Identities=11% Similarity=0.070 Sum_probs=57.5
Q ss_pred hhhhcCcee---eeeeccce-eecc--cCCCcceeeecCCC----CcccEEEEEEEeCCCccccccchHHhhcCCcccCC
Q 025329 139 RKLLSGDLD---LGIVGLDT-VSEF--GQGNEDLIIVHDAL----DYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAE 208 (254)
Q Consensus 139 ~yV~~G~aD---lGIvG~Dv-L~E~--~~d~~~l~~~l~dL----gfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~~~ 208 (254)
.+|..+..| ++++..+. +... +.-.++. .+|| .+..--++++++++. .++|++||.+.. ..+.
T Consensus 65 ~~v~~a~~DGytl~~~~~~~~~~~~~~~~~~yd~---~~df~pv~~~~~~~~~lvv~~ds---~~~sl~dL~~~a-k~~p 137 (312)
T 2f5x_A 65 TQVARAQPDGYSILLMHAGFSTAPSLYKNPGYEP---YTSFEPIGLVVDVPMTIIARGDF---PPNNIKELAEYV-KKNA 137 (312)
T ss_dssp HHHHTSCSSSSEEEEEETHHHHGGGTCSCCSSCT---TTSEEEEEEEEEEEEEEEECTTC---SCCSHHHHHHHH-HHHG
T ss_pred HHHHhCCCCCcEEEEecCHHHHHHHHcCCCCCCc---ccccceeeecccCcEEEEEeCCC---CCCCHHHHHHHH-HhCC
Confidence 578877777 88876552 3221 1101111 1122 245667788999884 567888885311 1122
Q ss_pred CCcEEEcCC----CccHHH-HHHHcCCceEEEEEcCCceecc
Q 025329 209 KPLRVATGF----TYLGPK-FMKDNGLKHVVFSTADGALEAA 245 (254)
Q Consensus 209 r~lRVATkY----PnLark-yf~~~Gi~~veIi~l~GSvElA 245 (254)
+++++++.= .+++-+ +++..|++ ++.|.-.|+-|+.
T Consensus 138 ~~~~~g~~g~Gs~~hl~~~~l~~~~Gi~-~~~Vpy~G~~~a~ 178 (312)
T 2f5x_A 138 DKISLANAGIGAASHLCGTMLVEALGVN-LLTIPYKGTAPAM 178 (312)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHHTCC-CEEEECSSHHHHH
T ss_pred CceEEeCCCCCcHHHHHHHHHHHHHCCC-eEEeccCChHHHH
Confidence 357888863 456554 45668995 7777777776654
No 99
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=49.09 E-value=33 Score=29.32 Aligned_cols=66 Identities=18% Similarity=0.281 Sum_probs=48.1
Q ss_pred CCCCCCCceEEEecCCCCChHH-HHHHHHhCCCccCCCCCCceEeecCCCCCeEEEeecCcchhhhhhcCceeeeeeccc
Q 025329 76 NRISERDEIRLGLPSKGRMAAD-TLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLD 154 (254)
Q Consensus 76 ~~~~~~~~LrIALPsKGRL~e~-tl~LL~~aGi~v~~~~~R~L~~~~~~~p~iev~~vRp~DIp~yV~~G~aDlGIvG~D 154 (254)
.++.+..--|||++ +|...+. ...+|++.|++.. ++++..+.+.|+...+..|.+|.+++..-
T Consensus 124 ~s~~DLkGk~i~v~-~gs~~~~~~~~~l~~~Gl~~~---------------~v~~v~~~~~~~~~al~~G~vDa~~~~~p 187 (324)
T 3ksx_A 124 RTVADLKGKRIAFQ-KGSSAHNLLLRVLAKSGLSMR---------------DITPLYLSPANARAAFAAGQVDAWAIWDP 187 (324)
T ss_dssp CSGGGGTTCEEEEC-TTSHHHHHHHHHHHHTTCCGG---------------GSEEEECCHHHHHHHHHTTCCSEEEEETT
T ss_pred CCHHHhCCCEEEec-CCChHHHHHHHHHHHcCCCHH---------------HeEEEeCCHHHHHHHHHcCCCCEEEEccH
Confidence 44555556799999 7887665 4558889998542 24455556689999999999999888766
Q ss_pred eee
Q 025329 155 TVS 157 (254)
Q Consensus 155 vL~ 157 (254)
+..
T Consensus 188 ~~~ 190 (324)
T 3ksx_A 188 WYS 190 (324)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 100
>3kos_A HTH-type transcriptional activator AMPR; alpha-beta sandwich, DNA-binding, transcription regulation; HET: MES; 1.83A {Citrobacter freundii} PDB: 3kot_A
Probab=48.03 E-value=11 Score=29.34 Aligned_cols=73 Identities=12% Similarity=-0.088 Sum_probs=38.8
Q ss_pred hhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCccccccchHHhhcCCcccCCCCcEEEcCCC
Q 025329 139 RKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFT 218 (254)
Q Consensus 139 ~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~~~r~lRVATkYP 218 (254)
..+.+|.+|+||+....- . .++. -..++.-+++++++++. ....-+++||.+. .-|.....
T Consensus 52 ~~l~~g~~Dl~i~~~~~~---~---~~~~----~~~l~~~~~~~v~~p~~-~~~~~~~~~L~~~--------~~i~~~~~ 112 (219)
T 3kos_A 52 VDPAAEGLDYTIRYGGGA---W---HDTD----AQYLCSALMSPLCSPTL-ASQIQTPADILKF--------PLLRSYRR 112 (219)
T ss_dssp CCHHHHTCSEEEEEECSC---C---TTEE----EEEEEECCEEEEBCHHH-HTTCSSGGGGGGS--------CEEEESCT
T ss_pred cccccCCccEEEEeCCCC---C---CCce----EEEecccceEEEeChHH-hhccCCHHHHhcC--------ceeccCCc
Confidence 467899999999864321 1 1222 12345666777766442 1223356676532 12332333
Q ss_pred ccHHHHHHHcCC
Q 025329 219 YLGPKFMKDNGL 230 (254)
Q Consensus 219 nLarkyf~~~Gi 230 (254)
...+++|.+.+.
T Consensus 113 ~~~~~~~~~~~~ 124 (219)
T 3kos_A 113 DEWALWMQTVGE 124 (219)
T ss_dssp THHHHHHHHTTC
T ss_pred cCHHHHHHHcCC
Confidence 445667777664
No 101
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=45.22 E-value=13 Score=33.32 Aligned_cols=67 Identities=10% Similarity=0.051 Sum_probs=43.5
Q ss_pred cccEEEEEEEeCCCccccccchHHhhcCCcccCCCCcEEEcCC----CccHHH-HHHHcCCceEEEEEcCCceeccc
Q 025329 175 YGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGF----TYLGPK-FMKDNGLKHVVFSTADGALEAAP 246 (254)
Q Consensus 175 fG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~~~r~lRVATkY----PnLark-yf~~~Gi~~veIi~l~GSvElAP 246 (254)
+..--++++++.+. .++|++||.+. ...+.+++++++.= .+++-+ +++..|++ ++.|.-.|+-|+..
T Consensus 112 ~~~~~~~lvv~~ds---~~~tl~dL~~~-ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~Gi~-~~~Vpy~G~~~a~~ 183 (314)
T 2dvz_A 112 FANTANVVAVNPKF---PAKDFKGFLEE-LKKNPGKYSYGSSGTCGVLHLMGESFKMATGTD-IVHVPYKGSGPAVA 183 (314)
T ss_dssp EEEECEEEEECTTS---SCSSHHHHHHH-HHTSTTTCEEEESCTTSHHHHHHHHHHHHHTCC-CEEEECSSHHHHHH
T ss_pred cccCCEEEEEeCCC---CCCCHHHHHHH-HHhCCCcEEEeCCCCCcHHHHHHHHHHHHhCCC-eEEcccCCHHHHHH
Confidence 45566788898884 56788888532 12234568998863 355554 55668996 77777777766543
No 102
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=44.92 E-value=23 Score=31.31 Aligned_cols=100 Identities=13% Similarity=0.046 Sum_probs=59.6
Q ss_pred hhhhcCcee---eeeeccceee-cc--cCCCcceeeecCCC----CcccEEEEEEEeCCCccccccchHHhhcCCcccCC
Q 025329 139 RKLLSGDLD---LGIVGLDTVS-EF--GQGNEDLIIVHDAL----DYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAE 208 (254)
Q Consensus 139 ~yV~~G~aD---lGIvG~DvL~-E~--~~d~~~l~~~l~dL----gfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~~~ 208 (254)
.+|..+..| ++++..+.+. .. +.-.++ ..+|| .+..--++++++.+. .++|++||.+.. ..+.
T Consensus 56 ~~v~~a~~DGytl~~~~~~~~~~~~~~~~~~yd---~~~d~~pv~~~~~~~~~lvv~~~s---~~~sl~dL~~~a-k~~p 128 (301)
T 2qpq_A 56 RLVADRAPDGYSLLMVNSSFAVNPGVFRNLPFD---PKKDFAAVINVAYVPSVFVVPAGS---KYKTLGELMAAA-KQTN 128 (301)
T ss_dssp HHHHTSCSSSSEEEEEETHHHHHHHHCTTCSSC---TTTTEEEEEEEEEEEEEEEEETTC---SCCSHHHHHHHT-CSSS
T ss_pred HHHHhCCCCCcEEEEeCCHHHHHHHhccCCCCC---chhcchhhhehhcCCeEEEEeCCC---CCCCHHHHHHHH-HhCC
Confidence 678877777 8887655322 11 110111 11122 245667788898884 567888886321 2234
Q ss_pred CCcEEEcCC----CccHHHHH-HHcCCceEEEEEcCCceeccc
Q 025329 209 KPLRVATGF----TYLGPKFM-KDNGLKHVVFSTADGALEAAP 246 (254)
Q Consensus 209 r~lRVATkY----PnLarkyf-~~~Gi~~veIi~l~GSvElAP 246 (254)
+++++++.= .+++-+.| +..|++ ++.|.-.|+-|+.-
T Consensus 129 ~~~~~g~~g~Gs~~hl~~~~l~~~~G~~-~~~Vpy~g~~~a~~ 170 (301)
T 2qpq_A 129 TQVTYGSCGNGTPQHLAGELLNVSAKTH-MVHVPYKGCGPALN 170 (301)
T ss_dssp CCCEEEESSTTSHHHHHHHHHHHHHTCC-CEEEECSSHHHHHH
T ss_pred CceEEecCCCCcHHHHHHHHHHHHhCCC-eEEeccCChHHHHH
Confidence 568998863 46666554 567995 77777777766543
No 103
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=44.87 E-value=41 Score=28.41 Aligned_cols=84 Identities=18% Similarity=0.159 Sum_probs=49.2
Q ss_pred cchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCc----------------------ccc
Q 025329 135 KDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGI----------------------FEN 192 (254)
Q Consensus 135 ~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~----------------------~~d 192 (254)
..+-..+..|.+|+++.+.-.-.|... .+.. --.|.....++.++.+.. -..
T Consensus 81 ~~~~~~l~~g~~D~~~~~~~~t~eR~~----~~~f--s~py~~~~~~~~~~~~~~~~~~~~~~~~pf~~~p~tv~~~~~~ 154 (312)
T 1yae_A 81 NGMVRELIDHKADLAVAPLAITYVREK----VIDF--SKPFMTLGISILYRKPNGTNPGVFSFLNGGSLVPRGSERMESP 154 (312)
T ss_dssp CSHHHHHHTTSCSEECSSCBCCHHHHH----HEEE--EEEEEEECEEEEEEC----------------------------
T ss_pred hHHHHHHhCCCcCEEeecceechhhcc----eEEe--cceeeecceEEEEeCCccccccceeeecccccCCcccccccCC
Confidence 467788999999999876544344321 1211 124556667777776521 046
Q ss_pred ccchHHhhcCCcccCCCCcEEEcCCCccHHHHHHHcCC
Q 025329 193 INSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGL 230 (254)
Q Consensus 193 v~sl~dL~~~~~~~~~r~lRVATkYPnLarkyf~~~Gi 230 (254)
+++++||.+. +.+|||+--...+..+|.+.++
T Consensus 155 i~~~~dL~g~------~~~~vg~v~~~~~~~~l~~~~~ 186 (312)
T 1yae_A 155 IDSADDLAKQ------TKIEYGAVEDGATMTFFKKSKI 186 (312)
T ss_dssp CCSHHHHHTC------SSSEEECBTTSHHHHHHHHCCB
T ss_pred CCCHHHHhhc------cCceEEEEeCChHHHHHHhccC
Confidence 7899999731 2358996444455677776543
No 104
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=44.42 E-value=15 Score=30.25 Aligned_cols=67 Identities=15% Similarity=0.114 Sum_probs=41.2
Q ss_pred CCCeEEEeecCcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCcc--ccccchHHhhc
Q 025329 124 LSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIF--ENINSLRELAQ 201 (254)
Q Consensus 124 ~p~iev~~vRp~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~--~dv~sl~dL~~ 201 (254)
.|++++.+. ..|....+.+|.+|+||+..+.-. .++. -..++..+++++++++... ...-+++||.+
T Consensus 119 ~P~v~i~l~-~~~~~~~l~~~~~Dl~i~~~~~~~------~~l~----~~~L~~~~~~~v~~~~~~~~~~~~~~~~dL~~ 187 (306)
T 3hhg_A 119 YPHIRLSLV-SSEGYINLIERKVDIALRAGELDD------SGLR----ARHLFDSRFRVIASPEYLAKHGTPQSTEELAG 187 (306)
T ss_dssp CTTEEEEEE-CCSSSHHHHTTSSSCEEESCCCCC------SSCE----EEEEEEEEEEEEECHHHHHHHCCCSSTTGGGG
T ss_pred CCCeEEEEE-eccchhhHhhcCccEEEEeCCCCC------CCeE----EEEeeeeEEEEEECHHHHHhcCCCCCHHHHhc
Confidence 367777766 667777899999999998754211 1222 2345678888888765210 11234566653
No 105
>4exl_A PBP 1, phosphate-binding protein PSTS 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; 1.70A {Streptococcus pneumoniae}
Probab=42.50 E-value=34 Score=29.25 Aligned_cols=69 Identities=20% Similarity=0.199 Sum_probs=44.1
Q ss_pred eEEEeecCcchhhhhhcCceeeeeeccceeecc-cCCCcceeeecCCCCcccEEEEEEEeCCCccccccchHHhhc
Q 025329 127 LEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEF-GQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQ 201 (254)
Q Consensus 127 iev~~vRp~DIp~yV~~G~aDlGIvG~DvL~E~-~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~ 201 (254)
+++...-..++...+.+|.+|+|+++... .|. +.+..++. ...++.=.|+++++.+.++..+ ++++|..
T Consensus 34 i~v~~~gS~~gi~~l~~g~~Dig~~~~~~-~~~~~~~~~~l~----~~~ia~d~lvvvv~~~~~~~~l-t~~~L~~ 103 (265)
T 4exl_A 34 VNVQGGGSGTGLSQVQSGAVDIGNSDVFA-EEKDGIDASALV----DHKVAVAGLALIVNKEVDVDNL-TTEQLRQ 103 (265)
T ss_dssp EEEEEECHHHHHHHHHTTSSSEEEESSCG-GGSTTCCGGGEE----CCEEEEEEEEEEECTTCCCCEE-CHHHHHH
T ss_pred EEEeeCCcHHHHHHHHcCCCccccccCCc-chhhcccccCce----EeeEEEEEEEEEECCCCccccC-CHHHHHH
Confidence 45555677889999999999999985211 111 11112233 4678888899999887544332 4566653
No 106
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=42.34 E-value=60 Score=27.23 Aligned_cols=67 Identities=16% Similarity=0.123 Sum_probs=47.3
Q ss_pred CCCCCCCceEEEecCCCCChHHHH-HHHHhCCCccCCCCCCceEeecCCCCCeEEEeecC-cchhhhhhcCceeeeeecc
Q 025329 76 NRISERDEIRLGLPSKGRMAADTL-DLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRP-KDIVRKLLSGDLDLGIVGL 153 (254)
Q Consensus 76 ~~~~~~~~LrIALPsKGRL~e~tl-~LL~~aGi~v~~~~~R~L~~~~~~~p~iev~~vRp-~DIp~yV~~G~aDlGIvG~ 153 (254)
.++.+..-.|||++..|...+..+ .+|++.|++.. ++++..+.+ .++...+..|.+|.+++..
T Consensus 131 ~s~~DL~Gk~i~~~~~gs~~~~~~~~~l~~~G~~~~---------------~v~~~~~~~~~~~~~al~~G~vDa~~~~~ 195 (346)
T 3qsl_A 131 KGPADLKGRKIGVTAPGSSTNMVVNFFLAKHGLKAS---------------DVSFIGVGAGAGAVTALRSGQIDAISNTD 195 (346)
T ss_dssp CSGGGGTTCEEEESSTTSHHHHHHHHHHHHTTCCGG---------------GSEEEECCSSHHHHHHHHHTSCSEEEEET
T ss_pred CChHHcCCCEEEECCCCcHHHHHHHHHHHHcCCCHH---------------HeEEEecCCcHHHHHHHHcCCccEEEecc
Confidence 344555556999986787665554 68889998532 244455543 5899999999999999976
Q ss_pred ceee
Q 025329 154 DTVS 157 (254)
Q Consensus 154 DvL~ 157 (254)
.+..
T Consensus 196 p~~~ 199 (346)
T 3qsl_A 196 PVVS 199 (346)
T ss_dssp THHH
T ss_pred hhHH
Confidence 6654
No 107
>2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC transporter, periplasmic SO binding protein, bicarbonate-binding protein; 1.35A {Synechocystis SP} PDB: 2i48_A 2i4b_A 2i4c_A
Probab=42.07 E-value=42 Score=31.05 Aligned_cols=95 Identities=12% Similarity=0.161 Sum_probs=52.4
Q ss_pred CcchhhhhhcCc----eeeeeeccceeec--cc----CCCcceeeecCCCCc-ccEEEEEEEeCCCcc-ccccc------
Q 025329 134 PKDIVRKLLSGD----LDLGIVGLDTVSE--FG----QGNEDLIIVHDALDY-GDCRLSLAIPKYGIF-ENINS------ 195 (254)
Q Consensus 134 p~DIp~yV~~G~----aDlGIvG~DvL~E--~~----~d~~~l~~~l~dLgf-G~CRLvVAvP~~~~~-~dv~s------ 195 (254)
..++-..+..|. +|+|++|.++..= .+ ....++..+. .+.- |.+ +.+.++. + ..+++
T Consensus 76 ~~~~~~al~~G~~~~~~D~a~~~~~~~~~~~~g~~~~~~g~~~~~v~-~~~~~g~~---i~v~~~~-~~s~i~~~~~~lk 150 (429)
T 2i49_A 76 WASARDNVTIGSQGGGIDGGQWQMPMPHLITEGIITNGNKVPMYVLA-QLITQGNG---IAVAPMH-EGKGVNLDITKAA 150 (429)
T ss_dssp HHHHHHHHHHTGGGTSCSEEEECTTHHHHHHTTTTTTTCCCCEEEEE-ECCBCCEE---EEECGGG-TTTTCSSCCGGGH
T ss_pred HHHHHHHHHcCCCCCceeEEEeccHHHHHHHcCccccCCCCCEEEEE-EeccCCcE---EEEecch-hhcccccchHHHH
Confidence 367888999999 9999987664321 11 1112233221 2222 322 3333321 1 13333
Q ss_pred --hHHh-hcCCcccCCCCcEEEcCCCc-----cHHHHHHHcCCc---eEEEEEc
Q 025329 196 --LREL-AQMPQWTAEKPLRVATGFTY-----LGPKFMKDNGLK---HVVFSTA 238 (254)
Q Consensus 196 --l~dL-~~~~~~~~~r~lRVATkYPn-----Larkyf~~~Gi~---~veIi~l 238 (254)
++|| +. .++++|||.-+|. +.+.+|++.|++ +|+++.+
T Consensus 151 ~~i~dL~k~-----~GK~~~Iav~~~gs~~~~~l~~~L~~~Gl~p~~DV~~v~~ 199 (429)
T 2i49_A 151 DYIKGFNKT-----NGRKFKAAHTFPNVNQDFWIRYWFAAGGVDPDTDIDLLAV 199 (429)
T ss_dssp HHHHTHHHH-----HSSCCEEEESSTTSHHHHHHHHHHHHTTCCTTTTSEEEEC
T ss_pred HHHHHHHHh-----CCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCCCcEEEEEC
Confidence 4777 51 0123599987664 356788899984 5888876
No 108
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=41.91 E-value=11 Score=31.76 Aligned_cols=69 Identities=12% Similarity=0.109 Sum_probs=38.6
Q ss_pred cCCCCCCCceEEEecCC--C-CChHHHHHHHHhCCCccCCCCCCceEeecCCCCCeEEEeecCcchhhhhhcCceeeeee
Q 025329 75 DNRISERDEIRLGLPSK--G-RMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIV 151 (254)
Q Consensus 75 ~~~~~~~~~LrIALPsK--G-RL~e~tl~LL~~aGi~v~~~~~R~L~~~~~~~p~iev~~vRp~DIp~yV~~G~aDlGIv 151 (254)
..+++..+.+||+|-++ | .|.+...+.|++.|+++.....-. .+..+.|+ =+..+...|..|.+|.||+
T Consensus 13 ~~~~~~~~~MkIaIgsDhaG~~lK~~i~~~L~~~G~eV~D~G~~~--~~~~dYPd------~a~~va~~V~~g~~d~GIl 84 (166)
T 3s5p_A 13 EAQTQGPGSMKVAFASDHGGRDLRMFLQQRASAHGYEVMDLGTES--DASVDYPD------FAKIGCEAVTSGRADCCIL 84 (166)
T ss_dssp ------CTTCEEEEEECGGGHHHHHHHHHHHHHTTCEEEEEEC----------CH------HHHHHHHHHHTTSCSEEEE
T ss_pred eecCCCCCceEEEEEECchHHHHHHHHHHHHHHCCCEEEEcCCCC--CCCCCHHH------HHHHHHHHHHcCCCcEEEE
Confidence 33444445567888654 3 467888899999999886642111 00011221 1245677899999999985
No 109
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural GENO protein structure initiative; 1.97A {Coccidioides immitis}
Probab=40.86 E-value=25 Score=30.29 Aligned_cols=60 Identities=12% Similarity=0.020 Sum_probs=38.6
Q ss_pred eEEEeecCcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCC-CcccEEEEEEEeCCCc
Q 025329 127 LEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDAL-DYGDCRLSLAIPKYGI 189 (254)
Q Consensus 127 iev~~vRp~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dL-gfG~CRLvVAvP~~~~ 189 (254)
+++......++-..|.+|.+|+||+....-.+. .....+. ..-. .+..-+|++++|.+.+
T Consensus 56 v~l~~~~s~~l~~~l~~G~~Dl~i~~~~~~~~~-l~~~~~~--~~~~~~l~~d~lvlv~~~~hp 116 (294)
T 3cvg_A 56 VAWYKSDTTVTINYLKDGIVDVGITYSPVAERI-SIKHGIS--ESPSYYAFRDHFMLIGPPSNP 116 (294)
T ss_dssp EEEEECCHHHHHHHHHTTSCSEEEESCHHHHHH-HHHTTSB--CSSCEEEEEEEEEEEECTTCT
T ss_pred EEEEeCCHHHHHHHHHcCCCcEEEEcCchhhhH-HHhCCcc--cceeeeEEeccEEEEecCCCh
Confidence 556666789999999999999999964321111 0000010 0113 5677899999998855
No 110
>3hhf_B Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 2.30A {Neisseria meningitidis serogroup B}
Probab=40.25 E-value=23 Score=26.97 Aligned_cols=66 Identities=15% Similarity=0.124 Sum_probs=37.5
Q ss_pred CCeEEEeecCcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCcc--ccccchHHhhc
Q 025329 125 SNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIF--ENINSLRELAQ 201 (254)
Q Consensus 125 p~iev~~vRp~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~--~dv~sl~dL~~ 201 (254)
|++++.+.- .|....+.+|.+|+||+..+.- . .++. -..++.-+++++++.+... ...-+++||.+
T Consensus 34 P~v~l~i~~-~~~~~~l~~g~~D~~i~~~~~~-~-----~~~~----~~~l~~~~~~~v~~~~~~~~~~~~~~~~~L~~ 101 (213)
T 3hhf_B 34 PHIRLSLVS-SEGYINLIERKVDIALRAGELD-D-----SGLR----ARHLFDSRFRVIASPEYLAKHGTPQSTEELAG 101 (213)
T ss_dssp TTEEEEEEC-CSTTHHHHTTSSSEEEECC--C-C-----SSEE----EEEEEEECEEEEECHHHHHHHCCCSSGGGGGG
T ss_pred CCcEEEEEe-CCcHHHHHhCCccEEEEEecCC-C-----ccce----EEeeecceEEEEeCHHHHHhcCCCCCHHHhcC
Confidence 566666664 4444559999999999875421 1 1222 1245677788888765211 12235566653
No 111
>2nxo_A Hypothetical protein SCO4506; PFAM, DUF178, NYSGXRC, 10093F, PSI-2, structural genomics, protein structure initiative; 2.04A {Streptomyces coelicolor} SCOP: c.94.1.1
Probab=39.12 E-value=9.3 Score=32.84 Aligned_cols=29 Identities=34% Similarity=0.602 Sum_probs=23.7
Q ss_pred CeEEEeecCcchhhhhhcCceeeeeeccc
Q 025329 126 NLEVWFQRPKDIVRKLLSGDLDLGIVGLD 154 (254)
Q Consensus 126 ~iev~~vRp~DIp~yV~~G~aDlGIvG~D 154 (254)
++++.+--+.++-..+..|.+|+|.+|.-
T Consensus 34 ~~~~~~~~~~~l~~al~~G~iDia~~~~~ 62 (291)
T 2nxo_A 34 DFELTKDTPEKLSEQLVRGDLDIGPVTLV 62 (291)
T ss_dssp GCEEEEECHHHHHHHHHTTSCSEEEEEHH
T ss_pred CeEEEECCHHHHHHHHHcCCCCEeehhHH
Confidence 36666666788899999999999999843
No 112
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=38.73 E-value=52 Score=26.14 Aligned_cols=79 Identities=18% Similarity=0.164 Sum_probs=48.9
Q ss_pred EEeecCcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCccccccchHHhhcCCcccCC
Q 025329 129 VWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAE 208 (254)
Q Consensus 129 v~~vRp~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~~~ 208 (254)
+..+.-.+.-..+..|.+|+++.+.-.-.|.... +. . --.|.....++.++.+. ++||
T Consensus 48 ~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~r~~~---~~-f--s~p~~~~~~~~~~~~~~-------~~dL--------- 105 (232)
T 3i6v_A 48 WVKNDWDSIIPNLVSGNYDTIIAGMSITDERDEV---ID-F--TQNYIPPTASSYVATSD-------GADL--------- 105 (232)
T ss_dssp EEECCGGGHHHHHHTTSCSEECSSCBCCHHHHTT---SE-E--EEEEECCCEEEEEESST-------TCCT---------
T ss_pred EEECCHHHHHHHHHCCCCCEEEeCCcCCHHHHhh---cC-c--ccccccCCeEEEEECCC-------hHHh---------
Confidence 3334446777889999999988776554443321 11 0 01344455677777762 2333
Q ss_pred CCcEEEcCCCccHHHHHHHcCC
Q 025329 209 KPLRVATGFTYLGPKFMKDNGL 230 (254)
Q Consensus 209 r~lRVATkYPnLarkyf~~~Gi 230 (254)
++ |||+---.....++++.++
T Consensus 106 ~g-~igv~~g~~~~~~l~~~~~ 126 (232)
T 3i6v_A 106 SG-IVAAQTATIQAGYIAESGA 126 (232)
T ss_dssp TS-EEEEETTSHHHHHHHHSSS
T ss_pred CC-CEEEecCchHHHHHHhcCC
Confidence 25 8888777778888888854
No 113
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=38.06 E-value=59 Score=27.17 Aligned_cols=65 Identities=15% Similarity=0.250 Sum_probs=44.8
Q ss_pred CCCCCCceEEEecCCCCChHHH-HHHHHhCCCccCCCCCCceEeecCCCCCeEEEeecCcchhhhhhcCceeeeeeccce
Q 025329 77 RISERDEIRLGLPSKGRMAADT-LDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDT 155 (254)
Q Consensus 77 ~~~~~~~LrIALPsKGRL~e~t-l~LL~~aGi~v~~~~~R~L~~~~~~~p~iev~~vRp~DIp~yV~~G~aDlGIvG~Dv 155 (254)
++.+..--+||++ +|...... ..+|++.|++.. ++++..+...++...+..|.+|++++..-+
T Consensus 99 s~~dL~Gk~i~~~-~gs~~~~~l~~~l~~~Gl~~~---------------~v~~~~~~~~~~~~al~~G~vDa~~~~~~~ 162 (308)
T 2x26_A 99 TVADLKGHKVAFQ-KGSSSHNLLLRALRQAGLKFT---------------DIQPTYLTPADARAAFQQGNVDAWAIWDPY 162 (308)
T ss_dssp SGGGGTTSEEEEC-TTSHHHHHHHHHHHHTTCCGG---------------GSEEEECCHHHHHHHHHTTSSSEEEEETTH
T ss_pred CHHHcCCCEEeee-CCCcHHHHHHHHHHHcCCCHH---------------HeEEEecChHHHHHHHHcCCCCEEEecchh
Confidence 4444444689998 78776554 457888898532 133344456788999999999999987655
Q ss_pred ee
Q 025329 156 VS 157 (254)
Q Consensus 156 L~ 157 (254)
+.
T Consensus 163 ~~ 164 (308)
T 2x26_A 163 YS 164 (308)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 114
>2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase; HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A
Probab=35.83 E-value=28 Score=31.16 Aligned_cols=20 Identities=30% Similarity=0.124 Sum_probs=16.5
Q ss_pred hhhhhhcCceeeeeecccee
Q 025329 137 IVRKLLSGDLDLGIVGLDTV 156 (254)
Q Consensus 137 Ip~yV~~G~aDlGIvG~DvL 156 (254)
....+..|.+|..++..-+.
T Consensus 210 ~~~aL~~G~vDA~~~~~p~~ 229 (365)
T 2de3_A 210 QAAVLASGDVDALYSWLPWA 229 (365)
T ss_dssp HHHHHHSSSCSEEEEEHHHH
T ss_pred HHHHHhCCCcCEEEEcchhH
Confidence 57889999999999876554
No 115
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens}
Probab=34.93 E-value=9.1 Score=33.32 Aligned_cols=62 Identities=13% Similarity=0.002 Sum_probs=40.6
Q ss_pred CeEEEeecCcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCcc
Q 025329 126 NLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIF 190 (254)
Q Consensus 126 ~iev~~vRp~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~ 190 (254)
.+++.+.-...+-..+++|.+|++|++...-.+.-.+..-.+. .-.|..-+|||++|.+.++
T Consensus 35 ~V~~~~~gSg~ll~qi~~G~aDV~isa~~~~~~~l~~~g~~~~---~~~~~~n~lVlV~P~~~P~ 96 (236)
T 3lr1_A 35 KVDVIAVGTGQALKLGEAGDVDVVFVHARKLEDKFVADGFGVN---RKDVMYNDFVIVGPKNDPA 96 (236)
T ss_dssp EEEEEEECHHHHHHHHHTTSCSEEEECCHHHHHHHHHTTSEEE---EEEEEECCEEEEECTTCTT
T ss_pred eEEEEEcChHHHHHHHhcCCCCEEeecCchhHHHHHhcCCCcc---eEEEEcCcEEEEEECCChh
Confidence 3677778888999999999999999987543321000000111 1245566899999998653
No 116
>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic BIN protein, ABC transporter, transport protein, ligand, metal- protein; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A
Probab=33.82 E-value=21 Score=32.69 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=21.0
Q ss_pred cchhhhhhcCceeeeeeccceeeccc
Q 025329 135 KDIVRKLLSGDLDLGIVGLDTVSEFG 160 (254)
Q Consensus 135 ~DIp~yV~~G~aDlGIvG~DvL~E~~ 160 (254)
.++..||+.|.+|+||+-+......+
T Consensus 230 ~~~l~~v~~G~aDag~vy~S~a~~~~ 255 (354)
T 3k6v_A 230 VELSSALETGEIDYLYIYRSVAEQHG 255 (354)
T ss_dssp HHHHHHHHHTSCSEEEEEHHHHHHHT
T ss_pred HHHHHHHHcCCCCEEEEEhhhhhhcC
Confidence 47889999999999999876555444
No 117
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=33.30 E-value=16 Score=29.54 Aligned_cols=66 Identities=15% Similarity=0.091 Sum_probs=38.4
Q ss_pred CCeEEEeecCcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCc--cccccchHHhhc
Q 025329 125 SNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGI--FENINSLRELAQ 201 (254)
Q Consensus 125 p~iev~~vRp~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~--~~dv~sl~dL~~ 201 (254)
|++++.+. ..|....+.+|.+|+||+..+.- . .++. -..++..+++++++++.. ....-+++||..
T Consensus 118 P~v~i~~~-~~~~~~~l~~~~~Dl~i~~~~~~---~---~~l~----~~~l~~~~~~~v~~~~~~~~~~~~~~~~~L~~ 185 (291)
T 3szp_A 118 PDIHIELM-MSNQADDLDPTEWDVIFRVGPQR---D---SSLI----ARKIGEVKDILVASPQYLSSHPQPTHAEELHQ 185 (291)
T ss_dssp TTEEEEEE-EECSCSCCCGGGCSEEEEESCCC---C---TTCE----EEEEEEECEEEEECHHHHHHSCCCSSGGGGGG
T ss_pred CCeEEEEE-EecCccCccccCceEEEEecCCC---C---CCee----EEEecccceEEEECHHHHHhcCCCCCHHHHhc
Confidence 55665555 55666789999999999876431 1 1222 124456777777765421 012335566653
No 118
>3tmg_A Glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein...; ssgcid, structural genomics; 1.90A {Borrelia burgdorferi}
Probab=32.88 E-value=13 Score=32.35 Aligned_cols=131 Identities=14% Similarity=0.115 Sum_probs=70.3
Q ss_pred CCCceEEEecCCC---CC-hHHHHHHHHhCCCccCCCCCCceEeecCCCCCeEEEeecCcchhhhhhcCceeeeeeccce
Q 025329 80 ERDEIRLGLPSKG---RM-AADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDT 155 (254)
Q Consensus 80 ~~~~LrIALPsKG---RL-~e~tl~LL~~aGi~v~~~~~R~L~~~~~~~p~iev~~vRp~DIp~yV~~G~aDlGIvG~Dv 155 (254)
..+.|+||-. .. .+ .+-...+|++.|+++.. + ..-...+-.-++.|.+|++..+.--
T Consensus 14 ~~~~I~Ig~~-~~te~~i~~~i~~~~Le~~G~~Ve~----~--------------~~~~~~~~~AL~~G~iD~~~e~w~~ 74 (280)
T 3tmg_A 14 NLKSVKIGYV-NWGGETAATNVLKVVFEKMGYNAEI----F--------------SVTTSIMYQYLASGKIDGTVSSWVP 74 (280)
T ss_dssp -CEEEEEEEC-CCHHHHHHHHHHHHHHHHTTEEEEE----E--------------ECCHHHHHHHHHTTSSSEEEEEEET
T ss_pred CCCCEEEEcC-CCchHHHHHHHHHHHHHHCCCceEE----E--------------ECCcHHHHHHHHCCCCcEEEeccCC
Confidence 3456999975 33 21 22333467777776532 1 0111245567899999998876311
Q ss_pred e-----ecccCCCcceeeecCCCCcccEEEEEEEeCCCccccccchHHhhcCCcccCCCCcEEEc--CCC--ccHHHHHH
Q 025329 156 V-----SEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVAT--GFT--YLGPKFMK 226 (254)
Q Consensus 156 L-----~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~~~r~lRVAT--kYP--nLarkyf~ 226 (254)
. .+.-. .++. .+... +...+..++||++ .+++|++||+....... +..++. .++ .+..+.++
T Consensus 75 ~~~~~~~~~~~--~~l~-~l~~~-~~~~~~~l~V~~~---~~i~sisDL~~~~~~f~--~~~~g~~~G~~~~~~~~~~l~ 145 (280)
T 3tmg_A 75 TADKFYYEKLK--TKFV-DLGAN-YEGTIQGFVVPSY---VPISSISELKGKGDKFK--NKMIGIDAGAGTQIVTEQALN 145 (280)
T ss_dssp TTTHHHHHHHG--GGEE-EEEEE-EEEEEEEEEEETT---SCCCBGGGGTTCGGGGT--TEEECCSTTCHHHHHHHHHHH
T ss_pred cccHHHHHHhc--CcEE-Ecccc-CCCceEEEEECCC---CCCCCHHHHHhhHHHcC--CeEEecCCCchhHHHHHHHHH
Confidence 1 11111 1233 22222 3456789999998 47999999974321111 122332 222 23456777
Q ss_pred HcCC-ceEEEEEc
Q 025329 227 DNGL-KHVVFSTA 238 (254)
Q Consensus 227 ~~Gi-~~veIi~l 238 (254)
.-|+ ++++++..
T Consensus 146 ~yGL~~~~~~v~~ 158 (280)
T 3tmg_A 146 YYGLSKEYELVPS 158 (280)
T ss_dssp HTTCTTTSEEECC
T ss_pred hcCCCCceEEEeC
Confidence 7888 44777753
No 119
>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic BIN protein, ABC transporter, transport protein, ligand, metal- protein; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A
Probab=32.33 E-value=28 Score=31.79 Aligned_cols=106 Identities=11% Similarity=0.051 Sum_probs=58.9
Q ss_pred CCceEEEecCCCCChH---HHHHHHHhC--CCccCCCCCCceEeecCCCCCeEEEeecCcchhhhh-hcC-ceeeeeecc
Q 025329 81 RDEIRLGLPSKGRMAA---DTLDLLKDC--QLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKL-LSG-DLDLGIVGL 153 (254)
Q Consensus 81 ~~~LrIALPsKGRL~e---~tl~LL~~a--Gi~v~~~~~R~L~~~~~~~p~iev~~vRp~DIp~yV-~~G-~aDlGIvG~ 153 (254)
.+.|+|.-. |.+.+ +..+.|++. |++ +++.+--.....+.+ +.| .+|+.+...
T Consensus 42 a~~L~V~~a--~sl~~~~~~l~~~Fe~~~pgv~------------------V~~~~ggSg~l~~qi~e~G~~aDVf~sad 101 (354)
T 3k6v_A 42 GEVLTVFHA--GSLSVPFEELEAEFEAQHPGVD------------------VQREAAGSAQSVRKITELGKKADVLASAD 101 (354)
T ss_dssp -CEEEEEEE--GGGHHHHHHHHHHHHHHSTTCE------------------EEEEEECHHHHHHHHHTSCCCCSEEEESS
T ss_pred CCcEEEEEe--cchHHHHHHHHHHHHHHCCCcE------------------EEEEeCCHHHHHHHHHhcCCCccEEEECC
Confidence 346999987 55644 344444432 222 334444455666777 345 578877653
Q ss_pred c-e---eecccCCCcceeeecCCCCcccEEEEEEEeCCCcc-ccccc---hHHhhcCCcccCCCCcEEEcCCCcc
Q 025329 154 D-T---VSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIF-ENINS---LRELAQMPQWTAEKPLRVATGFTYL 220 (254)
Q Consensus 154 D-v---L~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~-~dv~s---l~dL~~~~~~~~~r~lRVATkYPnL 220 (254)
. + +.+.+.. .. .-.|..=+|++++|++.++ .++++ +++|.. ...|||+.-|+.
T Consensus 102 ~~~~~~l~~~g~~-~~------~~~~a~n~lVliv~~~~p~~~~I~~~~~~~~L~~-------~~~riai~~P~~ 162 (354)
T 3k6v_A 102 YALIPSLMVPEYA-DW------YAAFARNQMILAYTNESKYGDEINTDNWYEILRR-------PDVRYGFSNPND 162 (354)
T ss_dssp TTHHHHHTTTTTC-SC------EEEEEECCEEEEECTTSTTTTTCCTTTHHHHHHS-------TTCCEEEECTTT
T ss_pred HHHHHHHHhCCCC-CC------ceEeECCeEEEEEECCCccccccCcccHHHHhcC-------CCCEEEEcCCCC
Confidence 2 2 2222210 00 1245556799999998654 34554 567752 136999999874
No 120
>1iej_A Ovotransferrin; iron, metal binding protein; 1.65A {Gallus gallus} SCOP: c.94.1.2 PDB: 1tfa_A 1nft_A 1nnt_A 1ovb_A 1gv8_A 1gvc_A*
Probab=31.08 E-value=63 Score=29.49 Aligned_cols=90 Identities=13% Similarity=0.032 Sum_probs=49.4
Q ss_pred eEEEeec-CcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcc------cEEE-EEEEeCCCccccccchHH
Q 025329 127 LEVWFQR-PKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYG------DCRL-SLAIPKYGIFENINSLRE 198 (254)
Q Consensus 127 iev~~vR-p~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG------~CRL-vVAvP~~~~~~dv~sl~d 198 (254)
++++... -.|....+..|.||++..+-..+...+.+...+.-++ .-.++ ..-- ++.|+.+. ++ +++|
T Consensus 34 veCv~~~s~~~Ci~aI~~g~aD~~~ld~~~~~~A~~~~~~l~pi~-~e~~~~~~~~~~~Y~aVaVVkkdS---~i-sl~d 108 (332)
T 1iej_A 34 LTCVQKATYLDCIKAIANNEADAITLDGGQVFEAGLAPYKLKPIA-AEVYEHTEGSTTSYYAVAVVKKGT---EF-TVND 108 (332)
T ss_dssp EEEEECSSHHHHHHHHHTTSCCBEEECHHHHHHHTSTTTCCEEEE-EEEEECSSSEESEEEEEEEEETTC---CC-CGGG
T ss_pred eEEEEcCCHHHHHHHHHcCCCcEEEeCccceeEecccccCCEEEE-EEEecCCCCCCCceEEEEEEeCCC---CC-CHHH
Confidence 4444332 2488899999999999997666566552222222111 11222 3333 44457763 45 6788
Q ss_pred hhcCCcccCCCCcEEEcCCCc------cHHHHHHHcCC
Q 025329 199 LAQMPQWTAEKPLRVATGFTY------LGPKFMKDNGL 230 (254)
Q Consensus 199 L~~~~~~~~~r~lRVATkYPn------Larkyf~~~Gi 230 (254)
|+ ++|++--=++ +-..++.++|+
T Consensus 109 Lk---------GKksChtg~~stsGw~~Pi~~L~~~g~ 137 (332)
T 1iej_A 109 LQ---------GKTSCHTGLGRSAGWNIPIGTLLHRGA 137 (332)
T ss_dssp CT---------TCEEEESCTTCTTTTHHHHHHHHHTTS
T ss_pred HC---------CCceEcCCCCCccchHHHHHHHHHcCC
Confidence 75 3566543333 33456666665
No 121
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=30.85 E-value=48 Score=26.71 Aligned_cols=57 Identities=11% Similarity=0.021 Sum_probs=35.5
Q ss_pred eEEEeecCcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCc
Q 025329 127 LEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGI 189 (254)
Q Consensus 127 iev~~vRp~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~ 189 (254)
+++......++...+..|.+|+||+....-.+ +.. .++. -..++.-+++++++.+.+
T Consensus 58 v~i~~~~~~~~~~~l~~g~~Di~i~~~~~~~~-~~~-~~~~----~~~l~~~~~~~v~~~~~p 114 (290)
T 1twy_A 58 VAVQGVGSTAGISLLKKGVADIAMTSRYLTES-EAQ-NTLH----TFTLAFDGLAIVVNQANP 114 (290)
T ss_dssp EEEEESCHHHHHHHHHTTSCSEEEESSCCCTT-TCC-TTCE----EEEEEEEEEEEEECTTCC
T ss_pred EEEEecCcHHHHHHHhcCCCcEEEecCCCchh-hhh-cCce----EEEEEeeeEEEEECCCCC
Confidence 34444455678899999999999987653211 100 1122 124567888999988743
No 122
>1h45_A Lactoferrin; metal transport, iron transport, metal binding; 1.95A {Homo sapiens} SCOP: c.94.1.2 PDB: 1eh3_A 2pms_A* 1h43_A 1h44_A 1dsn_A 1lct_A 1hse_A 1vfe_A 1l5t_A 1vfd_A 1lgb_C* 1z6v_A 1z6w_A
Probab=30.81 E-value=42 Score=30.61 Aligned_cols=71 Identities=20% Similarity=0.177 Sum_probs=40.3
Q ss_pred CCeEEEeec-CcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcc------cEEE-EEEEeCCCccccccch
Q 025329 125 SNLEVWFQR-PKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYG------DCRL-SLAIPKYGIFENINSL 196 (254)
Q Consensus 125 p~iev~~vR-p~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG------~CRL-vVAvP~~~~~~dv~sl 196 (254)
+.+++.... -.|.-..+..|.||+++.|-..+...+...+++.-++ .--++ .+-- ++.|+.+. ++ ++
T Consensus 33 ~~vecv~~~~~~~ci~aI~~g~AD~~~ld~~~~~~A~~~~~~l~pi~-~e~~~~~~~~~~~Y~avaVVkk~s---~i-sl 107 (334)
T 1h45_A 33 PPVSCIKRDSPIQCIQAIAENRADAVTLDGGFIYEAGLAPYKLRPVA-AEVYGTERQPRTHYYAVAVVKKGG---SF-QL 107 (334)
T ss_dssp CCEEEEECSSHHHHHHHHHTTSCCBEEECHHHHHHHHSTTTCEEEEE-EEEEECSSSEESEEEEEEEEETTC---CC-CG
T ss_pred CceEEEEcCCHHHHHHHHHcCCCCEEEeCccceEEeecCccCCEEEE-EEeecCCCCCCCceEEEEEEeCCC---CC-CH
Confidence 345554443 2488899999999999997666666552212222111 11122 2333 44466773 45 67
Q ss_pred HHhh
Q 025329 197 RELA 200 (254)
Q Consensus 197 ~dL~ 200 (254)
+||+
T Consensus 108 ~dLk 111 (334)
T 1h45_A 108 NELQ 111 (334)
T ss_dssp GGCT
T ss_pred HHHC
Confidence 8876
No 123
>1ryo_A Serotransferrin; iron transport, metal transport; 1.20A {Homo sapiens} SCOP: c.94.1.2 PDB: 1bp5_A 1btj_A 1n84_A 1oqg_A 2o84_X 1fqf_A 1fqe_A 1oqh_A 2o7u_B 1jqf_A 1n7x_A 3fgs_A 1a8e_A 1a8f_A 1suv_C 1dtg_A 1d3k_A 1d4n_A 1n7w_A 1b3e_A ...
Probab=28.67 E-value=39 Score=30.75 Aligned_cols=26 Identities=15% Similarity=0.137 Sum_probs=21.6
Q ss_pred cchhhhhhcCceeeeeeccceeeccc
Q 025329 135 KDIVRKLLSGDLDLGIVGLDTVSEFG 160 (254)
Q Consensus 135 ~DIp~yV~~G~aDlGIvG~DvL~E~~ 160 (254)
.|.-+.+..|.+|++..|-..+...+
T Consensus 46 ~~ci~ai~~g~aD~~~l~~~~~~~A~ 71 (327)
T 1ryo_A 46 LDCIRAIAANEADAVTLDAGLVYDAY 71 (327)
T ss_dssp HHHHHHHHTTSCCBEEECHHHHHHHH
T ss_pred HHHHHHHHcCCCcEEEeCccceeEEe
Confidence 47889999999999999866666665
No 124
>2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar, carbohydrate metabolism, pentose phosphate pathway; HET: R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP: c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A
Probab=25.93 E-value=14 Score=30.98 Aligned_cols=64 Identities=13% Similarity=0.070 Sum_probs=36.8
Q ss_pred CceEEEecCCC---CChHHHHHHHHhCCCccCCCCCCceEeecCCCCCeEEEeecCcchhhhhhcCceeeeeec
Q 025329 82 DEIRLGLPSKG---RMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVG 152 (254)
Q Consensus 82 ~~LrIALPsKG---RL~e~tl~LL~~aGi~v~~~~~R~L~~~~~~~p~iev~~vRp~DIp~yV~~G~aDlGIvG 152 (254)
.|+||||-++= .|.+...+.|++.|+++.....-. .+ +.+++ --=+.-+...|..|.+|.||+.
T Consensus 2 ~~MkIaigsDhaG~~lK~~i~~~L~~~G~eV~D~G~~~-----~~-~~~dY-pd~a~~va~~V~~g~~d~GIli 68 (162)
T 2vvp_A 2 SGMRVYLGADHAGYELKQRIIEHLKQTGHEPIDCGALR-----YD-ADDDY-PAFCIAAATRTVADPGSLGIVL 68 (162)
T ss_dssp -CCEEEEEECHHHHHHHHHHHHHHHHTTCEEEECSCCS-----CC-TTCCH-HHHHHHHHHHHHHSTTCEEEEE
T ss_pred CCCEEEEEeCchhHHHHHHHHHHHHHCCCEEEEeCCCC-----CC-CCCCh-HHHHHHHHHHHHcCCCceEEEE
Confidence 34578886432 256778889999999887642110 01 11100 0012345667889999999853
No 125
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=24.92 E-value=34 Score=28.26 Aligned_cols=66 Identities=12% Similarity=-0.017 Sum_probs=42.3
Q ss_pred CeEEEeecCcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCcc---ccccchHHhhc
Q 025329 126 NLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIF---ENINSLRELAQ 201 (254)
Q Consensus 126 ~iev~~vRp~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~---~dv~sl~dL~~ 201 (254)
.+++......++...+.+|.+|+||+....- ..++. -..++..+++++++++... .+.-+++||.+
T Consensus 121 ~i~~~~~~~~~~~~~l~~g~~D~~i~~~~~~------~~~l~----~~~l~~~~~~~v~~~~~~~~~~~~~~~~~dL~~ 189 (303)
T 3isp_A 121 LLDVRIEDQDHSARLLREGVAMGAVTTERNP------VPGCR----VHPLGEMRYLPVASRPFVQRHLSDGFTAAAAAK 189 (303)
T ss_dssp EEEEEECCHHHHHHHHHTTSCSEEEESCCSC------CTTEE----EEEEEEEEEEEEECHHHHHHHCTTCSCTTTTTT
T ss_pred eEEEEecChHHHHHHHHcCcceEEEecCCCC------CCCeE----EEEccceeEEEEecchHhhhccccCCCHhHhcc
Confidence 4666666777899999999999999875421 11232 2356788889888776211 11225666653
No 126
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=23.71 E-value=27 Score=30.30 Aligned_cols=61 Identities=11% Similarity=0.024 Sum_probs=38.9
Q ss_pred CeEEEeecCcchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCc
Q 025329 126 NLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGI 189 (254)
Q Consensus 126 ~iev~~vRp~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~ 189 (254)
.+++.+.-...+-..+++|.+|++|++...-.+.-.+ ...... .-.|..=+|||++|.+.+
T Consensus 35 ~V~~~~~gSg~ll~qi~~G~aDv~isa~~~~~~~l~~-~g~~~~--~~~~a~N~lVlV~P~~~P 95 (237)
T 3muq_A 35 KVDVIAAGTGKALKMGENGDVDLVMTHAPKAEGTFVE-KGYGVL--PRKLMYNDFVIVGPKADP 95 (237)
T ss_dssp EEEEEEECHHHHHHHHHTTSSSEEEECCHHHHHHHHH-TTSEEE--EEEEEEEEEEEEECTTCT
T ss_pred eEEEEEcChHHHHHHHhcCCCCEEEecCchhHHHHHh-cCCccc--cEEEEeCCEEEEEeCCCh
Confidence 3667777788899999999999999986432221000 001000 123555589999998854
No 127
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=23.60 E-value=95 Score=25.85 Aligned_cols=83 Identities=8% Similarity=0.120 Sum_probs=48.1
Q ss_pred cchhhhhhcCceeeeeeccceeecccCCCcceeeecCCCCcccEEEEEEEeCCCccccccchHHhhcCCcccCC-CCcEE
Q 025329 135 KDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAE-KPLRV 213 (254)
Q Consensus 135 ~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~~~-r~lRV 213 (254)
.++-..|..|.+|+.+.+.-.-.|... .+.. -..|....+++.++.+. .+++++||.... ...- .++||
T Consensus 95 ~~~~~~l~~g~~D~~~~~~~~t~~R~~----~~~f--s~p~~~~~~~~~~~~~~---~~~~~~dl~~~~-~~~l~~~~~v 164 (284)
T 2a5s_A 95 NGMIGEVVYQRAVMAVGSLTINEERSE----VVDF--SVPFVETGISVMVSRGT---QVTGLSDKKFQR-PHDYSPPFRF 164 (284)
T ss_dssp CHHHHHHHTTSCSEECSSCBCCHHHHT----TEEE--CCCCEEECEEEEEETTC---CCCSTTSHHHHS-GGGSSSCCCE
T ss_pred HHHHHHHhcCCcCEEEEEEEEeccccc----eEEe--ccCchhcCEEEEEECCc---ccccccccccCC-hhHcCCCceE
Confidence 677889999999998876554444321 2211 24677778888888873 355555654210 0000 14688
Q ss_pred EcCCCccHHHHHHH
Q 025329 214 ATGFTYLGPKFMKD 227 (254)
Q Consensus 214 ATkYPnLarkyf~~ 227 (254)
|+--..-+..+|.+
T Consensus 165 g~v~~~s~~~~l~~ 178 (284)
T 2a5s_A 165 GTVPNGSTERNIRN 178 (284)
T ss_dssp ECCTTSHHHHHHHT
T ss_pred EEEeCCchHHHHHH
Confidence 86433444455544
No 128
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=20.96 E-value=98 Score=21.28 Aligned_cols=55 Identities=11% Similarity=0.094 Sum_probs=32.3
Q ss_pred hHHHHHHHHhCCCccCCCCCCceEeecCCCCCeEEEeecCc-chhhhhhcCce-eeeee
Q 025329 95 AADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPK-DIVRKLLSGDL-DLGIV 151 (254)
Q Consensus 95 ~e~tl~LL~~aGi~v~~~~~R~L~~~~~~~p~iev~~vRp~-DIp~yV~~G~a-DlGIv 151 (254)
..+...+|++.|+.+.+..+-...+..++.+ .+..-+.. ||+.+....+. ++|+.
T Consensus 7 ~~elik~L~~~G~~~~r~~GSH~~~~~~~~~--~~~vP~h~~ei~~g~lk~Ilkqagl~ 63 (70)
T 1whz_A 7 PEEVARKLRRLGFVERMAKGGHRLYTHPDGR--IVVVPFHSGELPKGTFKRILRDAGLT 63 (70)
T ss_dssp HHHHHHHHHHTTCEEEEEETTEEEEECTTSC--EEEEECSSSSCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCCEEeCCCCCCceEecCCCC--eeEecCCcCcCCHHHHHHHHHHcCCC
Confidence 4689999999999865543323333333322 34343344 99988876553 34443
No 129
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=20.87 E-value=24 Score=27.83 Aligned_cols=34 Identities=24% Similarity=0.264 Sum_probs=24.2
Q ss_pred CCceEEEecC-CCCChHHHHHHHHhCCCccCCCCC
Q 025329 81 RDEIRLGLPS-KGRMAADTLDLLKDCQLSVKQVNP 114 (254)
Q Consensus 81 ~~~LrIALPs-KGRL~e~tl~LL~~aGi~v~~~~~ 114 (254)
.+..-||+.. .|++-...++.|.+.|+++...++
T Consensus 14 ~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp 48 (145)
T 2duw_A 14 RTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSP 48 (145)
T ss_dssp CCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECS
T ss_pred CEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCC
Confidence 3445566632 399999999999999997655444
No 130
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A*
Probab=20.30 E-value=94 Score=25.55 Aligned_cols=30 Identities=13% Similarity=0.193 Sum_probs=24.2
Q ss_pred EEEeecCcchhhhhhcCceeeeee-ccceee
Q 025329 128 EVWFQRPKDIVRKLLSGDLDLGIV-GLDTVS 157 (254)
Q Consensus 128 ev~~vRp~DIp~yV~~G~aDlGIv-G~DvL~ 157 (254)
++.++.+.|+...+..|.+|.+++ |...+.
T Consensus 120 ~~~~~~~~~~~~al~~G~vDa~~~~~ep~~~ 150 (272)
T 2czl_A 120 VPVEVRYDRILPMVAQGEVEAGLIIHESRFT 150 (272)
T ss_dssp EEEECCGGGHHHHHHTTSSSEEEECTTHHHH
T ss_pred ceeecChHHHHHHHHCCCCCEEEEecchhhh
Confidence 456667789999999999999998 566654
Done!