RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 025329
(254 letters)
>gnl|CDD|215136 PLN02245, PLN02245, ATP phosphoribosyl transferase.
Length = 403
Score = 382 bits (983), Expect = e-133
Identities = 159/239 (66%), Positives = 176/239 (73%), Gaps = 6/239 (2%)
Query: 12 PYFRQCPSLSPSGLSFFCPLSSFHISVASGPTTATNKPAAAVTCCVSSSQQFESHVSVVN 71
S PS P SS + + T CVS Q S +
Sbjct: 4 LSQSPSLSSLPSSSPLLSPPSSRASRLIAPRRRCL----RLATACVSQVQSSVVAGSTDS 59
Query: 72 GNIDNRISERDEIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWF 131
+ + +S R +IRLGLPSKGRMA DTLDLLKDCQLSVK+VNPRQYVA+IPQL NLEVWF
Sbjct: 60 AS--SVVSSRTQIRLGLPSKGRMAEDTLDLLKDCQLSVKKVNPRQYVAEIPQLPNLEVWF 117
Query: 132 QRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFE 191
QRPKDIVRKLLSGDLDLGIVG D + E+GQGNEDL+IVHDAL +GDC LS+AIPKYGIFE
Sbjct: 118 QRPKDIVRKLLSGDLDLGIVGYDMLREYGQGNEDLVIVHDALGFGDCHLSIAIPKYGIFE 177
Query: 192 NINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAVRI 250
NINSL+ELAQMPQWT E+PLRV TGFTYLGPKFMKDNG KHV FSTADGALEAAPA+ I
Sbjct: 178 NINSLKELAQMPQWTEERPLRVVTGFTYLGPKFMKDNGFKHVTFSTADGALEAAPAMGI 236
>gnl|CDD|234781 PRK00489, hisG, ATP phosphoribosyltransferase; Reviewed.
Length = 287
Score = 110 bits (278), Expect = 4e-29
Identities = 48/166 (28%), Positives = 82/166 (49%), Gaps = 21/166 (12%)
Query: 84 IRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLS 143
+R+ +P+KGR++ L+LL + L +++ + R +A +EV F RP DI +
Sbjct: 5 LRIAVPNKGRLSEPALELLAEAGLKIRR-DSRSLIATDEDN-PIEVLFLRPDDIPGYVAD 62
Query: 144 GDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMP 203
G +DLGI G D + E + + L +G CRL LA+P+ + + +LA
Sbjct: 63 GVVDLGITGEDLLEE----SGADVEELLDLGFGKCRLVLAVPED---SDWQGVEDLAGK- 114
Query: 204 QWTAEKPLRVATGFTYLGPKFMKDNGLK-HVVFSTADGALEAAPAV 248
R+AT + L +++ + G+ VV GA+E AP +
Sbjct: 115 --------RIATSYPNLTRRYLAEKGIDAEVVEL--SGAVEVAPRL 150
>gnl|CDD|232809 TIGR00070, hisG, ATP phosphoribosyltransferase. Members of this
family from B. subtilis, Aquifex aeolicus, and
Synechocystis PCC6803 (and related taxa) lack the
C-terminal third of the sequence. The sole homolog from
Archaeoglobus fulgidus lacks the N-terminal 50 residues
(as reported) and is otherwise atypical of the rest of
the family. This model excludes the C-terminal extension
[Amino acid biosynthesis, Histidine family].
Length = 182
Score = 106 bits (268), Expect = 1e-28
Identities = 52/166 (31%), Positives = 86/166 (51%), Gaps = 21/166 (12%)
Query: 84 IRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLS 143
+R+ LP KGR+ DTL LL+ L V + + R+ +A+ P +E RP+DI +
Sbjct: 1 LRIALP-KGRLLEDTLKLLEKAGLKVSREDSRKLIARDPDE-GIEFLLLRPQDIPTYVEH 58
Query: 144 GDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMP 203
G DLGI G D + E G D+ + D L +G CRL LA+P+ +I+S+ +L
Sbjct: 59 GAADLGITGYDVLLESGA---DVYELLD-LGFGKCRLVLAVPQE---SDISSVEDLKGK- 110
Query: 204 QWTAEKPLRVATGFTYLGPKFMKDNGLK-HVVFSTADGALEAAPAV 248
R+AT + L ++ + G+ ++ +G++E AP +
Sbjct: 111 --------RIATKYPNLARRYFEKKGIDVEIIKL--NGSVELAPLL 146
>gnl|CDD|110621 pfam01634, HisG, ATP phosphoribosyltransferase.
Length = 161
Score = 101 bits (255), Expect = 4e-27
Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 15/117 (12%)
Query: 132 QRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFE 191
RP DI + G +DLGI G D V E + + LD+G C+L +A+P+ G +
Sbjct: 1 LRPADIPVFVEDGVVDLGITGEDLVREEELAD---VEELLDLDFGSCKLVVAVPESGPYR 57
Query: 192 NINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAV 248
+ L R+AT + L K+ + NG DG++EAAPA+
Sbjct: 58 SPEDLAG-----------GKRIATKYPNLARKYFRKNG-IDAEIIKLDGSVEAAPAL 102
>gnl|CDD|223118 COG0040, HisG, ATP phosphoribosyltransferase [Amino acid transport
and metabolism].
Length = 290
Score = 104 bits (262), Expect = 9e-27
Identities = 45/166 (27%), Positives = 82/166 (49%), Gaps = 16/166 (9%)
Query: 84 IRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLS 143
+R+ LP KGR++ L+LL + + ++ R+ +A+ +E+ R +DI +
Sbjct: 3 LRIALPKKGRLSEPALELLAKAGIKISALDSRKLIAETE-NPPIELLLVRAQDIPTYVED 61
Query: 144 GDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMP 203
G DLGI G D + E G + + + D L +G CRL +A+P+ + + L+
Sbjct: 62 GVADLGITGEDVLRESGLDDASVEELLD-LGFGGCRLVVAVPEESDYTSPEDLKG----- 115
Query: 204 QWTAEKPLRVATGFTYLGPKFMKDNGLK-HVVFSTADGALEAAPAV 248
LR+AT + L K+ + G+ ++ G++E APA+
Sbjct: 116 ------RLRIATKYPNLARKYFAEKGIDVEIIKL--SGSVELAPAL 153
>gnl|CDD|237438 PRK13583, hisG, ATP phosphoribosyltransferase catalytic subunit;
Provisional.
Length = 228
Score = 71.2 bits (175), Expect = 7e-15
Identities = 47/166 (28%), Positives = 84/166 (50%), Gaps = 2/166 (1%)
Query: 84 IRLGLPSKGRMAADTLDLLKDCQLSVKQV-NPRQYVAQIPQLSNLEVWFQRPKDIVRKLL 142
I LGLPSKGR+ T + L++ + + R+Y ++ ++E+ F +I R+L
Sbjct: 3 ITLGLPSKGRLKEKTFAWFEKAGLTLVRTGSDREYRGRVEGEDDVELLFLSASEIPRELG 62
Query: 143 SGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGI-FENINSLRELAQ 201
+G +DLG+ G D V E + + + L +G L +A+P+ I + + L ++A
Sbjct: 63 AGRVDLGVTGEDLVREKLADWDKRVEIVARLGFGHADLVVAVPEIWIDVDTMADLDDVAA 122
Query: 202 MPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPA 247
+ + LR+AT + L +F+ G++ + GA E APA
Sbjct: 123 DFRARHGRRLRIATKYWRLTQQFLSQKGVQDYRIVESLGATEGAPA 168
>gnl|CDD|234971 PRK01686, hisG, ATP phosphoribosyltransferase catalytic subunit;
Reviewed.
Length = 215
Score = 55.9 bits (136), Expect = 1e-09
Identities = 41/140 (29%), Positives = 63/140 (45%), Gaps = 19/140 (13%)
Query: 81 RDEIRLGLPSKGRMAADTLDLLKDCQLSVKQVNP--RQYVAQIPQLSNLEVWFQRPKDIV 138
D + + LP KGR+ +TL LL + + R+ + P+ ++ R D+
Sbjct: 1 MDMLTIALP-KGRILEETLPLLAKAGIDPSEDPDKSRKLIFPTPE-PDVRFLLVRATDVP 58
Query: 139 RKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRE 198
+ G DLGIVG D + E G+ DL D L G CR+S+A+P +
Sbjct: 59 TYVEHGAADLGIVGKDVLLEHGK---DLYEPLD-LGIGKCRMSVAVPP-----GFDYAPA 109
Query: 199 LAQMPQWTAEKPLRVATGFT 218
+ Q P+ LRVAT +
Sbjct: 110 VKQGPR------LRVATKYP 123
>gnl|CDD|220401 pfam09786, CytochromB561_N, Cytochrome B561, N terminal. Members
of this family are found in the N terminal region of
cytochrome B561, as well as in various other putative
uncharacterized proteins.
Length = 559
Score = 32.1 bits (73), Expect = 0.26
Identities = 20/93 (21%), Positives = 30/93 (32%), Gaps = 8/93 (8%)
Query: 1 MSVSSASLFLQPYFRQCPSLSPSGLSFFCPLSSFHISVASGPTTATNKPAAAVTCCVSSS 60
M+ S + F PS S S F P S+ S P+ P+++ S
Sbjct: 129 MNTSEPLVPGHSSFSDSPSRSASPSRKFSPSSTIQQSPQLTPSNKPASPSSS-----YQS 183
Query: 61 QQFESHVSVVN---GNIDNRISERDEIRLGLPS 90
+ S + VN + R S G
Sbjct: 184 PSYSSSLGPVNSSGNRSNLRSSPWALRSSGDKK 216
>gnl|CDD|176102 cd05466, PBP2_LTTR_substrate, The substrate binding domain of
LysR-type transcriptional regulators (LTTRs), a member
of the type 2 periplasmic binding fold protein
superfamily. This model and hierarchy represent the the
substrate-binding domain of the LysR-type
transcriptional regulators that form the largest family
of prokaryotic transcription factor. Homologs of some of
LTTRs with similar domain organizations are also found
in the archaea and eukaryotic organisms. The LTTRs are
composed of two functional domains joined by a linker
helix involved in oligomerization: an N-terminal HTH
(helix-turn-helix) domain, which is responsible for the
DNA-binding specificity, and a C-terminal
substrate-binding domain, which is structurally
homologous to the type 2 periplasmic binding proteins.
As also observed in the periplasmic binding proteins,
the C-terminal domain of the bacterial transcriptional
repressor undergoes a conformational change upon
substrate binding which in turn changes the DNA binding
affinity of the repressor. The genes controlled by the
LTTRs have diverse functional roles including amino acid
biosynthesis, CO2 fixation, antibiotic resistance,
degradation of aromatic compounds, oxidative stress
responses, nodule formation of nitrogen-fixing bacteria,
synthesis of virulence factors, toxin production,
attachment and secretion, to name a few. The structural
topology of this substrate-binding domain is most
similar to that of the type 2 periplasmic binding
proteins (PBP2), which are responsible for the uptake of
a variety of substrates such as phosphate, sulfate,
polysaccharides, lysine/arginine/ornithine, and
histidine. The PBP2 bind their ligand in the cleft
between these domains in a manner resembling a Venus
flytrap. After binding their specific ligand with high
affinity, they can interact with a cognate membrane
transport complex comprised of two integral membrane
domains and two cytoplasmically located ATPase domains.
This interaction triggers the ligand translocation
across the cytoplasmic membrane energized by ATP
hydrolysis. Besides transport proteins, the PBP2
superfamily includes the substrate-binding domains from
ionotropic glutamate receptors, LysR-like
transcriptional regulators, and unorthodox sensor
proteins involved in signal transduction.
Length = 197
Score = 29.5 bits (67), Expect = 1.3
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 115 RQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGL 153
+ + P + L + +++ LL G+LDL IV L
Sbjct: 20 AAFRQRYPGV-ELSLVEGGSSELLEALLEGELDLAIVAL 57
>gnl|CDD|221318 pfam11925, DUF3443, Protein of unknown function (DUF3443). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria. Proteins in this
family are typically between 400 to 434 amino acids in
length. This protein has two conserved sequence motifs:
NPV and DNNG.
Length = 369
Score = 29.6 bits (67), Expect = 1.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 36 ISVASGPTTATNKPAAAVTCCVSSSQQ 62
I+V SG + N P +VT C + Q
Sbjct: 12 ITVDSGVSGVINIPTVSVTICAPGTSQ 38
>gnl|CDD|176112 cd08420, PBP2_CysL_like, C-terminal substrate binding domain of
LysR-type transcriptional regulator CysL, which
activates the transcription of the cysJI operon encoding
sulfite reductase, contains the type 2 periplasmic
binding fold. CysL, also known as YwfK, is a regular of
sulfur metabolism in Bacillus subtilis. Sulfur is
required for the synthesis of proteins and essential
cofactors in all living organism. Sulfur can be
assimilated either from inorganic sources (sulfate and
thiosulfate), or from organic sources (sulfate esters,
sulfamates, and sulfonates). CysL activates the
transcription of the cysJI operon encoding sulfite
reductase, which reduces sulfite to sulfide. Both cysL
mutant and cysJI mutant are unable to grow using sulfate
or sulfite as the sulfur source. Like other LysR-type
regulators, CysL also negatively regulates its own
transcription. In Escherichia coli, three LysR-type
activators are involved in the regulation of sulfur
metabolism: CysB, Cbl and MetR. The topology of this
substrate-binding domain is most similar to that of the
type 2 periplasmic binding proteins (PBP2), which are
responsible for the uptake of a variety of substrates
such as phosphate, sulfate, polysaccharides,
lysine/arginine/ornithine, and histidine. The PBP2 bind
their ligand in the cleft between these domains in a
manner resembling a Venus flytrap. After binding their
specific ligand with high affinity, they can interact
with a cognate membrane transport complex comprised of
two integral membrane domains and two cytoplasmically
located ATPase domains. This interaction triggers the
ligand translocation across the cytoplasmic membrane
energized by ATP hydrolysis.
Length = 201
Score = 29.0 bits (66), Expect = 1.6
Identities = 7/18 (38%), Positives = 14/18 (77%)
Query: 135 KDIVRKLLSGDLDLGIVG 152
++I ++L G++DLG+V
Sbjct: 39 EEIAERVLDGEIDLGLVE 56
>gnl|CDD|177701 PLN00072, PLN00072, 3-isopropylmalate isomerase/dehydratase small
subunit; Provisional.
Length = 246
Score = 28.7 bits (64), Expect = 2.4
Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 4/79 (5%)
Query: 1 MSVSSASLFLQPYF----RQCPSLSPSGLSFFCPLSSFHISVASGPTTATNKPAAAVTCC 56
S SA+ L P + S +P F SS ++ T+ P + +
Sbjct: 3 ASQQSANPTLAPSLASTNKSSSSATPRPFLRFSSTSSIFPFKPLTTSSGTSSPTISDSAE 62
Query: 57 VSSSQQFESHVSVVNGNID 75
+SS F VV NID
Sbjct: 63 STSSTTFHGLCFVVGDNID 81
>gnl|CDD|182659 PRK10700, PRK10700, 23S rRNA pseudouridylate synthase B;
Provisional.
Length = 289
Score = 29.0 bits (65), Expect = 2.5
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 175 YGDCRLSLAIPKYGIFE----NINSLRELAQMPQWTAEK 209
YGD L +P+ G E N LREL ++P T+ K
Sbjct: 215 YGDIPLPKGLPRGGWTELDLAQTNYLRELVELPPETSSK 253
>gnl|CDD|176103 cd08411, PBP2_OxyR, The C-terminal substrate-binding domain of the
LysR-type transcriptional regulator OxyR, a member of
the type 2 periplasmic binding fold protein superfamily.
OxyR senses hydrogen peroxide and is activated through
the formation of an intramolecular disulfide bond. The
OxyR activation induces the transcription of genes
necessary for the bacterial defense against oxidative
stress. The OxyR of LysR-type transcriptional regulator
family is composed of two functional domains joined by a
linker helix involved in oligomerization: an N-terminal
HTH (helix-turn-helix) domain, which is responsible for
the DNA-binding specificity, and a C-terminal
substrate-binding domain, which is structurally
homologous to the type 2 periplasmic binding proteins.
As also observed in the periplasmic binding proteins,
the C-terminal domain of the bacterial transcriptional
repressor undergoes a conformational change upon
substrate binding which in turn changes the DNA binding
affinity of the repressor. The C-terminal domain also
contains the redox-active cysteines that mediate the
redox-dependent conformational switch. Thus, the
interaction between the OxyR-tetramer and DNA is notably
different between the oxidized and reduced forms. The
structural topology of this substrate-binding domain is
most similar to that of the type 2 periplasmic binding
proteins (PBP2), which are responsible for the uptake of
a variety of substrates such as phosphate, sulfate,
polysaccharides, lysine/arginine/ornithine, and
histidine. The PBP2 bind their ligand in the cleft
between these domains in a manner resembling a Venus
flytrap. After binding their specific ligand with high
affinity, they can interact with a cognate membrane
transport complex comprised of two integral membrane
domains and two cytoplasmically located ATPase domains.
This interaction triggers the ligand translocation
across the cytoplasmic membrane energized by ATP
hydrolysis.
Length = 200
Score = 28.6 bits (65), Expect = 2.6
Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 122 PQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGL 153
P+L L + + + ++ KL SG+LD ++ L
Sbjct: 28 PKL-RLYLREDQTERLLEKLRSGELDAALLAL 58
>gnl|CDD|237172 PRK12683, PRK12683, transcriptional regulator CysB-like protein;
Reviewed.
Length = 309
Score = 28.1 bits (63), Expect = 4.0
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 115 RQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIV--GLDTVSE 158
RQ+ P++ +L + P++I LL+G+ D+GI LD +
Sbjct: 113 RQFKEVFPKV-HLALRQGSPQEIAEMLLNGEADIGIATEALDREPD 157
>gnl|CDD|227698 COG5411, COG5411, Phosphatidylinositol 5-phosphate phosphatase
[Signal transduction mechanisms].
Length = 460
Score = 28.2 bits (63), Expect = 4.3
Identities = 22/98 (22%), Positives = 34/98 (34%), Gaps = 23/98 (23%)
Query: 18 PSLSPSGLSFFC----PLSSFHISVASGPT----TATNKPAAAVT--------CCVSSSQ 61
P L L F +S T +++NK A A+ C V+S
Sbjct: 115 PQLGGILLRVFSLATNLPVVKPVSGTVKKTGFGGSSSNKGAVAIRFNYERTSFCFVNS-- 172
Query: 62 QFESHVSVVNGNIDNRISERDEIRLGLP-SKGRMAADT 98
H++ NI+ RI + I + S+G D
Sbjct: 173 ----HLAAGVNNIEERIFDYRSIASNICFSRGLRIYDH 206
>gnl|CDD|182121 PRK09863, PRK09863, putative frv operon regulatory protein;
Provisional.
Length = 584
Score = 28.3 bits (63), Expect = 4.5
Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 20/102 (19%)
Query: 114 PRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLII---VH 170
+ +A I QL I +K+L+ + + + + + LII +
Sbjct: 358 DQNSIATINQLI-----------IEQKVLNIRVIIVRSLSELEAIREEIEPLLIINNSHY 406
Query: 171 DALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLR 212
L AI Y F+N+ + + Q+ A +R
Sbjct: 407 LVD------LQDAINFYITFKNVITAAGIEQLKHLLATAYIR 442
>gnl|CDD|223542 COG0466, Lon, ATP-dependent Lon protease, bacterial type
[Posttranslational modification, protein turnover,
chaperones].
Length = 782
Score = 28.3 bits (64), Expect = 4.8
Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 198 ELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEA 244
E+ ++ +T ++ L +A +L PK +K++GLK + D A++
Sbjct: 488 EVIRLSGYTEDEKLEIAKR--HLIPKQLKEHGLKKGELTITDEAIKD 532
>gnl|CDD|214333 CHL00013, rpoA, RNA polymerase alpha subunit.
Length = 327
Score = 28.0 bits (63), Expect = 5.3
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 103 KDCQL--SVKQVNPRQYVAQIPQLSNLEVWFQ 132
+D L SV+ V+P Q++A I + +LE+ +
Sbjct: 111 QDIILPPSVEIVDPTQHIATITEPIDLEIELK 142
>gnl|CDD|237080 PRK12370, PRK12370, invasion protein regulator; Provisional.
Length = 553
Score = 27.9 bits (62), Expect = 6.3
Identities = 8/26 (30%), Positives = 18/26 (69%)
Query: 14 FRQCPSLSPSGLSFFCPLSSFHISVA 39
QC ++SP+ ++ +C L+ ++S+A
Sbjct: 284 LTQCVNMSPNSIAPYCALAECYLSMA 309
>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
alpha chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 531
Score = 27.4 bits (61), Expect = 8.5
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 15/55 (27%)
Query: 189 IFENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHV--VFSTADGA 241
+ +NI + +EL+Q+ + T LGP M + H+ +F T D A
Sbjct: 20 VIKNIEACKELSQITR-------------TSLGPNGMNKMVINHLDKLFVTNDAA 61
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.399
Gapped
Lambda K H
0.267 0.0725 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,697,927
Number of extensions: 1186606
Number of successful extensions: 961
Number of sequences better than 10.0: 1
Number of HSP's gapped: 948
Number of HSP's successfully gapped: 22
Length of query: 254
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 159
Effective length of database: 6,723,972
Effective search space: 1069111548
Effective search space used: 1069111548
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.1 bits)