RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 025329
(254 letters)
>d1h3da1 c.94.1.1 (A:5-224) ATP phosphoribosyltransferase
(ATP-PRTase, HisG), catalytic domain {Escherichia coli
[TaxId: 562]}
Length = 220
Score = 96.6 bits (240), Expect = 5e-25
Identities = 41/176 (23%), Positives = 80/176 (45%), Gaps = 20/176 (11%)
Query: 84 IRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLS 143
+R+ + GR++ D+ +LL C + + ++ ++ +A + +++ R DI ++
Sbjct: 3 LRIAMQKSGRLSDDSRELLARCGIKIN-LHTQRLIAMAENM-PIDILRVRDDDIPGLVMD 60
Query: 144 GDLDLGIVGLDTVSEFG-----QGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRE 198
G +DLGI+G + + E QG + LD+G CRLSLA P ++ SL
Sbjct: 61 GVVDLGIIGENVLEEELLNRRAQGEDPRYFTLRRLDFGGCRLSLATPVDEAWDGPLSLN- 119
Query: 199 LAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAVRITHLL 254
R+AT + +L +++ G +G++E AP + +
Sbjct: 120 -----------GKRIATSYPHLLKRYLDQKG-ISFKSCLLNGSVEVAPRAGLADAI 163
>d1z7me1 c.94.1.1 (E:1-204) ATP phosphoribosyltransferase
(ATP-PRTase, HisG), catalytic domain {Lactococcus lactis
[TaxId: 1358]}
Length = 204
Score = 86.6 bits (214), Expect = 2e-21
Identities = 34/171 (19%), Positives = 67/171 (39%), Gaps = 19/171 (11%)
Query: 84 IRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLS 143
I++ + KGR+ LL++ V+ + QI +L++ F +P D++ L
Sbjct: 2 IKIAIT-KGRIQKQVTKLLENADYDVEPILNLGRELQIKTKDDLQIIFGKPNDVITFLEH 60
Query: 144 GDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMP 203
G +D+G VG DT+ E + L G C +LA
Sbjct: 61 GIVDIGFVGKDTLDENDFDD---YYELLYLKIGQCIFALASYPD--------------FS 103
Query: 204 QWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAVRITHLL 254
++ R+A+ + + K+ + + +G++E P V + +
Sbjct: 104 NKNFQRHKRIASKYPRVTKKYFAQKQ-EDIEIIKLEGSVELGPVVGLADAI 153
>d1nh8a1 c.94.1.1 (A:1-210) ATP phosphoribosyltransferase
(ATP-PRTase, HisG), catalytic domain {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 210
Score = 82.0 bits (202), Expect = 1e-19
Identities = 40/171 (23%), Positives = 76/171 (44%), Gaps = 20/171 (11%)
Query: 84 IRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLS 143
+R+ +P+KG ++ ++L + + + + I ++N+E +F RPKDI + S
Sbjct: 2 LRVAVPNKGALSEPATEILAEAGYRRRT-DSKDLTV-IDPVNNVEFFFLRPKDIAIYVGS 59
Query: 144 GDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMP 203
G+LD GI G D V + + + AL +G A P + + +L
Sbjct: 60 GELDFGITGRDLVCD----SGAQVRERLALGFGSSSFRYAAPAGRNW----TTADL---- 107
Query: 204 QWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAVRITHLL 254
+R+AT + L K + G++ V DGA+E + + + +
Sbjct: 108 -----AGMRIATAYPNLVRKDLATKGIEATVI-RLDGAVEISVQLGVADAI 152
>d1ve4a1 c.94.1.1 (A:1-206) ATP phosphoribosyltransferase
(ATP-PRTase, HisG), catalytic domain {Thermus
thermophilus [TaxId: 274]}
Length = 206
Score = 75.4 bits (185), Expect = 3e-17
Identities = 36/175 (20%), Positives = 66/175 (37%), Gaps = 25/175 (14%)
Query: 80 ERDEIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVR 139
R + + LP KGRM + ++LK L + +V + + + + + R KD+
Sbjct: 2 RRFALTVALP-KGRMFREAYEVLKRAGLDLPEVEGERTLLHGKE-GGVALLELRNKDVPI 59
Query: 140 KLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLREL 199
+ G ++G+VG D + + G+ + + L +G CRLSL
Sbjct: 60 YVDLGIAEIGVVGKDVLLDSGRDLFEPV----DLGFGACRLSLI---------------- 99
Query: 200 AQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAVRITHLL 254
RVAT + + +K+ G V + E A + +
Sbjct: 100 --RRPGDTGPIRRVATKYPNFTARLLKERGWAADVVELSGNI-ELAAVTGLADAV 151
>d1o63a_ c.94.1.1 (A:) ATP phosphoribosyltransferase (ATP-PRTase,
HisG), catalytic domain {Thermotoga maritima [TaxId:
2336]}
Length = 203
Score = 69.3 bits (169), Expect = 5e-15
Identities = 35/171 (20%), Positives = 66/171 (38%), Gaps = 27/171 (15%)
Query: 84 IRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLS 143
++L +P KGR+ + LK + + R+ + + + ++ + RP D+ L+
Sbjct: 1 LKLAIP-KGRLEEKVMTYLKKTGVIFE----RES-SILREGKDIVCFMVRPFDVPTYLVH 54
Query: 144 GDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMP 203
G D+G G D + E + R+ LA PK
Sbjct: 55 GVADIGFCGTDVLLEKETSLIQPFFIP----TNISRMVLAGPKG---------------- 94
Query: 204 QWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAVRITHLL 254
+ E R+AT F + ++ + G H G++E AP ++ L+
Sbjct: 95 RGIPEGEKRIATKFPNVTQRYCESKG-WHCRIIPLKGSVELAPIAGLSDLI 144
>d1xoub_ a.231.1.2 (B:) EspA chaperone CesA {Escherichia coli
[TaxId: 562]}
Length = 84
Score = 26.6 bits (58), Expect = 1.1
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 191 ENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHV 233
E++N L E A+ AEK ++ G+TY + + D+ L +
Sbjct: 35 ESVNELSEKAKTDPQAAEKLNKLIEGYTYGEERKLYDSALSKI 77
>d1su7a_ e.26.1.2 (A:) Ni-containing carbon monoxide dehydrogenase
{Carboxydothermus hydrogenoformans [TaxId: 129958]}
Length = 633
Score = 27.1 bits (60), Expect = 2.4
Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 7/77 (9%)
Query: 152 GLDTVSE-FGQGNEDLIIVHDALDYGDC----RLS-LAIPKYGIFE-NINSLRELAQMPQ 204
GL V G+ N + L G C R L +++ L +A +
Sbjct: 496 GLKAVLTAIGEANGLGGPLPPVLHMGSCVDNSRAVALVAALANRLGVDLDRLPVVASAAE 555
Query: 205 WTAEKPLRVATGFTYLG 221
EK + + T +G
Sbjct: 556 AMHEKAVAIGTWAVTIG 572
>d1gnla_ e.26.1.1 (A:) Hybrid cluster protein (prismane protein)
{Desulfovibrio desulfuricans [TaxId: 876]}
Length = 543
Score = 27.1 bits (60), Expect = 2.5
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 8/58 (13%)
Query: 173 LDYGDC-------RLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFTYLGPK 223
LD G C ++L + + E++N L + W +K + V LG K
Sbjct: 447 LDAGQCNDSYSLAVIALKLKEVFGLEDVNDL-PIVYNIAWYEQKAVIVLLALLSLGVK 503
>d1oaoa_ e.26.1.2 (A:) Bifunctional carbon monoxide
dehydrogenase/acetyl-CoA synthase (CODH/ACS) beta (CODH)
subunit {Moorella thermoacetica [TaxId: 1525]}
Length = 673
Score = 26.7 bits (59), Expect = 3.1
Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 6/55 (10%)
Query: 173 LDYGDC----RLS-LAIPKYGIFE-NINSLRELAQMPQWTAEKPLRVATGFTYLG 221
G C R L + + + +A P+ + K + T + LG
Sbjct: 544 FHMGSCVDNSRAVDLLMAMANDLGVDTPKVPFVASAPEAMSGKAAAIGTWWVSLG 598
>d1jqka_ e.26.1.2 (A:) Ni-containing carbon monoxide dehydrogenase
{Rhodospirillum rubrum [TaxId: 1085]}
Length = 610
Score = 26.7 bits (59), Expect = 3.1
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 6/55 (10%)
Query: 173 LDYGDC----RLS-LAIPKYGIFE-NINSLRELAQMPQWTAEKPLRVATGFTYLG 221
+ G C R LA +++ L +A P+ +EK L + + +G
Sbjct: 499 MHMGSCVDNSRAVALATALANKLGVDLSDLPLVASAPECMSEKALAIGSWAVTIG 553
>d1vm6a2 d.81.1.3 (A:97-182) Dihydrodipicolinate reductase
{Thermotoga maritima [TaxId: 2336]}
Length = 86
Score = 25.2 bits (55), Expect = 3.3
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 149 GIVGLDTVSEFGQGNEDLIIVHDAL 173
G+ G V FG E + I H A+
Sbjct: 63 GVPGDHVVV-FGNIGETIEIKHRAI 86
>d1jsda_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different
strains [TaxId: 11320]}
Length = 317
Score = 26.2 bits (58), Expect = 4.3
Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 168 IVHDALDYGDCRLSLAIPKYGI-----FENINSLRELAQMPQWTAEKPLRVATG 216
I+ L+ G+C + + G+ F N++ P++ K L++A G
Sbjct: 258 ILKTDLNSGNCVVQCQTERGGLNTTLPFHNVSK-YAFGNCPKYVGVKSLKLAVG 310
>d2nxoa1 c.94.1.1 (A:5-281) Hypothetical protein SCo4506
{Streptomyces coelicolor [TaxId: 1902]}
Length = 277
Score = 25.6 bits (55), Expect = 7.0
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 126 NLEVWFQRPKDIVRKLLSGDLDLGIVGL 153
+ E+ P+ + +L+ GDLD+G V L
Sbjct: 28 DFELTKDTPEKLSEQLVRGDLDIGPVTL 55
>d2viua_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different
strains [TaxId: 11320]}
Length = 320
Score = 25.1 bits (55), Expect = 8.4
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 6/49 (12%)
Query: 173 LDYGDCRLSLAIPKYGI-----FENINSLRELAQMPQWTAEKPLRVATG 216
C P I F+N+N P++ + L++ATG
Sbjct: 264 APIDTCISECITPNGSIPNDKPFQNVNK-ITYGACPKYVKQNTLKLATG 311
>d1jsma_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different
strains [TaxId: 11320]}
Length = 321
Score = 25.1 bits (55), Expect = 9.4
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 168 IVHDALDYGDCRLSLAIPKYGI-----FENINSLRELAQMPQWTAEKPLRVATG 216
I+ L+YG+C P I F NI+ + + P++ L +ATG
Sbjct: 264 IMKSGLEYGNCNTKCQTPMGAINSSMPFHNIHP-LTIGECPKYVKSGRLVLATG 316
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.399
Gapped
Lambda K H
0.267 0.0658 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 903,462
Number of extensions: 40216
Number of successful extensions: 108
Number of sequences better than 10.0: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 16
Length of query: 254
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 171
Effective length of database: 1,268,006
Effective search space: 216829026
Effective search space used: 216829026
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.0 bits)