BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025330
(254 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JWH|C Chain C, Crystal Structure Of Human Protein Kinase Ck2 Holoenzyme
pdb|1JWH|D Chain D, Crystal Structure Of Human Protein Kinase Ck2 Holoenzyme
pdb|2R6M|A Chain A, Crystal Structure Of Rat Ck2-Beta Subunit
pdb|2R6M|B Chain B, Crystal Structure Of Rat Ck2-Beta Subunit
pdb|4DGL|A Chain A, Crystal Structure Of The Ck2 Tetrameric Holoenzyme
pdb|4DGL|B Chain B, Crystal Structure Of The Ck2 Tetrameric Holoenzyme
Length = 215
Score = 201 bits (511), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 91/140 (65%), Positives = 109/140 (77%)
Query: 102 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQ 161
WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y ALD+ILD+E Q
Sbjct: 9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQ 68
Query: 162 NELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIP 221
++L+E AAEMLYGLIH RYILT++G+A MLEKY+ DFG CPRVYC QP LP+G SDIP
Sbjct: 69 SDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIP 128
Query: 222 RSSTVKIYCPKCEDIYYPRS 241
+ VK+YCPKC D+Y P+S
Sbjct: 129 GEAMVKLYCPKCMDVYTPKS 148
>pdb|1RQF|A Chain A, Structure Of Ck2 Beta Subunit Crystallized In The Presence
Of A P21waf1 Peptide
pdb|1RQF|B Chain B, Structure Of Ck2 Beta Subunit Crystallized In The Presence
Of A P21waf1 Peptide
pdb|1RQF|D Chain D, Structure Of Ck2 Beta Subunit Crystallized In The Presence
Of A P21waf1 Peptide
pdb|1RQF|E Chain E, Structure Of Ck2 Beta Subunit Crystallized In The Presence
Of A P21waf1 Peptide
pdb|1RQF|G Chain G, Structure Of Ck2 Beta Subunit Crystallized In The Presence
Of A P21waf1 Peptide
pdb|1RQF|H Chain H, Structure Of Ck2 Beta Subunit Crystallized In The Presence
Of A P21waf1 Peptide
pdb|1RQF|J Chain J, Structure Of Ck2 Beta Subunit Crystallized In The Presence
Of A P21waf1 Peptide
pdb|1RQF|K Chain K, Structure Of Ck2 Beta Subunit Crystallized In The Presence
Of A P21waf1 Peptide
Length = 184
Score = 200 bits (508), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 91/140 (65%), Positives = 109/140 (77%)
Query: 102 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQ 161
WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y ALD+ILD+E Q
Sbjct: 15 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQ 74
Query: 162 NELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIP 221
++L+E AAEMLYGLIH RYILT++G+A MLEKY+ DFG CPRVYC QP LP+G SDIP
Sbjct: 75 SDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIP 134
Query: 222 RSSTVKIYCPKCEDIYYPRS 241
+ VK+YCPKC D+Y P+S
Sbjct: 135 GEAMVKLYCPKCMDVYTPKS 154
>pdb|3EED|A Chain A, Crystal Structure Of Human Protein Kinase Ck2 Regulatory
Subunit (Ck2beta; Mutant 1-193)
pdb|3EED|B Chain B, Crystal Structure Of Human Protein Kinase Ck2 Regulatory
Subunit (Ck2beta; Mutant 1-193)
Length = 193
Score = 199 bits (507), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 91/140 (65%), Positives = 109/140 (77%)
Query: 102 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQ 161
WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y ALD+ILD+E Q
Sbjct: 9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQ 68
Query: 162 NELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIP 221
++L+E AAEMLYGLIH RYILT++G+A MLEKY+ DFG CPRVYC QP LP+G SDIP
Sbjct: 69 SDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIP 128
Query: 222 RSSTVKIYCPKCEDIYYPRS 241
+ VK+YCPKC D+Y P+S
Sbjct: 129 GEAMVKLYCPKCMDVYTPKS 148
>pdb|1QF8|A Chain A, Truncated Form Of Casein Kinase Ii Beta Subunit (2-182)
From Homo Sapiens
pdb|1QF8|B Chain B, Truncated Form Of Casein Kinase Ii Beta Subunit (2-182)
From Homo Sapiens
Length = 182
Score = 193 bits (491), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 89/140 (63%), Positives = 106/140 (75%)
Query: 102 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQ 161
WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y ALD ILD+E Q
Sbjct: 9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDXILDLEPDEELEDNPNQ 68
Query: 162 NELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIP 221
++L+E AAE LYGLIH RYILT++G+A LEKY+ DFG CPRVYC QP LP+G SDIP
Sbjct: 69 SDLIEQAAEXLYGLIHARYILTNRGIAQXLEKYQQGDFGYCPRVYCENQPXLPIGLSDIP 128
Query: 222 RSSTVKIYCPKCEDIYYPRS 241
+ VK+YCPKC D+Y P+S
Sbjct: 129 GEAXVKLYCPKCXDVYTPKS 148
>pdb|2O0Y|A Chain A, Crystal Structure Of Putative Transcriptional Regulator
Rha1_ro06953 (Iclr-Family) From Rhodococcus Sp.
pdb|2O0Y|B Chain B, Crystal Structure Of Putative Transcriptional Regulator
Rha1_ro06953 (Iclr-Family) From Rhodococcus Sp.
pdb|2O0Y|C Chain C, Crystal Structure Of Putative Transcriptional Regulator
Rha1_ro06953 (Iclr-Family) From Rhodococcus Sp.
pdb|2O0Y|D Chain D, Crystal Structure Of Putative Transcriptional Regulator
Rha1_ro06953 (Iclr-Family) From Rhodococcus Sp
Length = 260
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 142 ALDLILDV--ESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMA 188
A +LI DV +S HG F ++ E VE E Y L+H L S G++
Sbjct: 161 APELIDDVAADSPHGPEFADQLREKVEDGRERGYQLVHGERELGSSGLS 209
>pdb|3CNG|A Chain A, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
pdb|3CNG|B Chain B, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
pdb|3CNG|C Chain C, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
pdb|3CNG|D Chain D, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
Length = 189
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 7/36 (19%)
Query: 220 IPRSSTVKIY-CPKCEDIYYPRSKYQGSILKIVGCI 254
IP T+ Y CPKC I+Y K IVGCI
Sbjct: 17 IPEGDTLPRYICPKCHTIHYQNPKV------IVGCI 46
>pdb|2FJI|1 Chain 1, Crystal Structure Of The C-Terminal Domain Of The Exocyst
Subunit Sec6p
pdb|2FJI|2 Chain 2, Crystal Structure Of The C-Terminal Domain Of The Exocyst
Subunit Sec6p
Length = 399
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 108 NLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVES 167
N EFF ++ E I ++ +V Y+D +DL++ + D+ + E+ ++V+
Sbjct: 307 NFTVMEFFMDLSCEPIDSILDIWQKYLEV-YWDSRIDLLVGILKCRKDVSSSERKKIVQQ 365
Query: 168 AAEMLY 173
A EML+
Sbjct: 366 ATEMLH 371
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,962,363
Number of Sequences: 62578
Number of extensions: 252698
Number of successful extensions: 476
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 470
Number of HSP's gapped (non-prelim): 9
length of query: 254
length of database: 14,973,337
effective HSP length: 97
effective length of query: 157
effective length of database: 8,903,271
effective search space: 1397813547
effective search space used: 1397813547
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)