Query 025330
Match_columns 254
No_of_seqs 137 out of 337
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 08:10:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025330.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025330hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qf8a_ g.41.4.1 (A:) Casein k 100.0 1.1E-72 8E-77 483.0 9.7 151 100-250 1-151 (173)
2 d2cona1 g.41.15.1 (A:8-73) RNA 56.8 1.4 0.0001 30.5 0.7 12 224-235 20-31 (66)
3 d2ak3a2 g.41.2.1 (A:125-161) M 45.4 4.8 0.00035 24.8 1.7 15 227-241 2-16 (37)
4 d1s3ga2 g.41.2.1 (A:126-160) M 44.5 5.1 0.00037 24.3 1.8 14 227-240 2-15 (35)
5 d1k3xa3 g.39.1.8 (A:223-262) E 41.9 6.9 0.00051 24.2 2.1 33 194-234 3-39 (40)
6 d1e4va2 g.41.2.1 (A:122-156) M 39.9 6.6 0.00048 23.8 1.7 14 227-240 2-15 (35)
7 d1zina2 g.41.2.1 (A:126-160) M 39.1 7.2 0.00052 23.6 1.8 14 227-240 2-15 (35)
8 d1mm2a_ g.50.1.2 (A:) Mi2-beta 34.8 12 0.00088 24.1 2.6 29 201-234 26-54 (61)
9 d1vqo31 g.41.8.3 (3:1-92) Ribo 33.3 5.9 0.00043 28.9 0.8 11 225-235 6-16 (92)
10 d1akya2 g.41.2.1 (A:131-168) M 30.7 13 0.00098 22.7 2.1 14 227-240 2-15 (38)
11 d1wepa_ g.50.1.2 (A:) PHD fing 29.9 12 0.00088 25.3 2.0 20 219-239 4-23 (79)
12 d2j0161 g.41.8.6 (6:9-53) Ribo 28.0 11 0.00082 24.0 1.4 17 219-235 21-37 (45)
13 d1cl4a_ g.40.1.1 (A:) Nucleoca 24.5 22 0.0016 21.3 2.2 14 229-242 4-17 (32)
14 d1f62a_ g.50.1.2 (A:) Williams 21.4 14 0.001 22.7 0.9 11 228-238 16-26 (51)
15 d1r2za3 g.39.1.8 (A:229-274) D 20.7 14 0.001 23.1 0.8 12 224-235 35-46 (46)
16 d1fp0a1 g.50.1.2 (A:19-88) Nuc 20.2 44 0.0032 21.8 3.4 35 201-240 24-58 (70)
No 1
>d1qf8a_ g.41.4.1 (A:) Casein kinase II beta subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=1.1e-72 Score=483.01 Aligned_cols=151 Identities=61% Similarity=1.108 Sum_probs=140.2
Q ss_pred CChHHHHhCCCCCeeEEecCcccccCCCccCCCCCCCCCHHHHHHHHcCCCCCCCCCCchHHHHHHHHHHHHHhhhcccc
Q 025330 100 TSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVR 179 (254)
Q Consensus 100 ~sWI~wFcsl~gneffceVDedYI~D~FNL~GL~~~Vp~Y~~ALd~ILd~e~~~~d~~~~~~~~~ie~~A~~LYGLIHAR 179 (254)
.|||+|||+++||+|||+||+|||+|+||||||+++||+|++||++|||.+++.+...+..+.+.++++|+.||||||||
T Consensus 1 ~sWI~wF~~~~gne~f~~Vd~dyI~D~FNl~GL~~~v~~y~~al~~Ild~~~~~~~~~~~~~~~~i~~~a~~LYGLIHaR 80 (173)
T d1qf8a_ 1 VSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGLIHAR 80 (173)
T ss_dssp CCHHHHHHHSTTCTTCCCCCHHHHHSGGGGTTGGGTSTTHHHHHHHHTTCCCC------CHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHhCCCCCeEEEEeCHHHHcCcchhcCchhccccHHHHHHHHhccCCChhhhhhhhhhHHHHHHHHHHHHHhhhh
Confidence 48999999999999999999999999999999999999999999999999876654444456677999999999999999
Q ss_pred ceeChHHHHHHHHhhhcCCCCCCCcccCCCCCccccccCCCCCCccceeeCCCCCccccCCCCCCcCCccc
Q 025330 180 YILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGSILKI 250 (254)
Q Consensus 180 YIlT~~GL~~M~eKY~~g~FG~CPRv~C~gq~lLPiGlSD~pg~stVKlYCP~C~DVY~P~s~~~~~IDG~ 250 (254)
||+|++||++|++||++|+||+||||+|++|+|||||+||+||+++||+|||+|+|||+|++.++++|||+
T Consensus 81 yI~T~~Gl~~m~eKy~~g~FG~CPRv~C~~~~~LPiGlSd~~g~~~vKlyCP~C~dvY~p~s~~~~~iDGA 151 (173)
T d1qf8a_ 81 YILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGA 151 (173)
T ss_dssp HTTSHHHHHHHHHHHHTTTTCBCCBGGGTTCBCEEECSCSSTTSCBCEEECTTTCCEECCSSGGGTTSBGG
T ss_pred eeecHhHHHHHHHHHhCCCCCCCCCcccCCCcccccccCCCCCcCcceEECCChhhccCCCCcccCcccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997
No 2
>d2cona1 g.41.15.1 (A:8-73) RNA-binding protein NOB1 (Nin one binding) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=56.84 E-value=1.4 Score=30.50 Aligned_cols=12 Identities=17% Similarity=0.888 Sum_probs=10.0
Q ss_pred ccceeeCCCCCc
Q 025330 224 STVKIYCPKCED 235 (254)
Q Consensus 224 stVKlYCP~C~D 235 (254)
.+-|+|||+|.-
T Consensus 20 ~~~k~FCpkCGn 31 (66)
T d2cona1 20 DMNRVFCGHCGN 31 (66)
T ss_dssp CSSCCSCSSSCC
T ss_pred CcccccCcccCC
Confidence 456999999985
No 3
>d2ak3a2 g.41.2.1 (A:125-161) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Probab=45.39 E-value=4.8 Score=24.78 Aligned_cols=15 Identities=13% Similarity=0.200 Sum_probs=12.0
Q ss_pred eeeCCCCCccccCCC
Q 025330 227 KIYCPKCEDIYYPRS 241 (254)
Q Consensus 227 KlYCP~C~DVY~P~s 241 (254)
+..||.|..+|+-..
T Consensus 2 R~vc~~cG~~Yh~~~ 16 (37)
T d2ak3a2 2 RWIHPGSGRVYNIEF 16 (37)
T ss_dssp EEEETTTTEEEETTT
T ss_pred ceeeCCcCChhhhcc
Confidence 468999999998543
No 4
>d1s3ga2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus globisporus [TaxId: 1459]}
Probab=44.50 E-value=5.1 Score=24.28 Aligned_cols=14 Identities=21% Similarity=0.448 Sum_probs=11.4
Q ss_pred eeeCCCCCccccCC
Q 025330 227 KIYCPKCEDIYYPR 240 (254)
Q Consensus 227 KlYCP~C~DVY~P~ 240 (254)
+..||.|..+|+-.
T Consensus 2 R~~C~~CG~~Yh~~ 15 (35)
T d1s3ga2 2 RRICKVCGTSYHLL 15 (35)
T ss_dssp EEEETTTCCEEETT
T ss_pred ccCCcCcCchhccc
Confidence 46899999999753
No 5
>d1k3xa3 g.39.1.8 (A:223-262) Endonuclease VIII {Escherichia coli [TaxId: 562]}
Probab=41.90 E-value=6.9 Score=24.15 Aligned_cols=33 Identities=30% Similarity=0.599 Sum_probs=20.4
Q ss_pred hhcCCCCC----CCcccCCCCCccccccCCCCCCccceeeCCCCC
Q 025330 194 YKNYDFGR----CPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCE 234 (254)
Q Consensus 194 Y~~g~FG~----CPRv~C~gq~lLPiGlSD~pg~stVKlYCP~C~ 234 (254)
|+-.+||+ ||+ |. .++.=+=++ ++---|||.|+
T Consensus 3 ~~~~VYgR~g~pC~~--C~-~~I~~~~~~-----gR~t~~Cp~CQ 39 (40)
T d1k3xa3 3 FRFKVFHRDGEPCER--CG-SIIEKTTLS-----SRPFYWCPGCQ 39 (40)
T ss_dssp CCCSSTTCTTSBCTT--TC-CBCEEEEET-----TEEEEECTTTC
T ss_pred eEEEEeCCCCCccCc--CC-CEEEEEEEC-----CCCCEEChhhC
Confidence 55578887 766 64 433333222 45678999997
No 6
>d1e4va2 g.41.2.1 (A:122-156) Microbial and mitochondrial ADK, insert "zinc finger" domain {Escherichia coli [TaxId: 562]}
Probab=39.89 E-value=6.6 Score=23.75 Aligned_cols=14 Identities=7% Similarity=0.149 Sum_probs=11.3
Q ss_pred eeeCCCCCccccCC
Q 025330 227 KIYCPKCEDIYYPR 240 (254)
Q Consensus 227 KlYCP~C~DVY~P~ 240 (254)
+..||.|..+|+-.
T Consensus 2 Rr~c~~cG~~Yh~~ 15 (35)
T d1e4va2 2 RRVHAPSGRVYHVK 15 (35)
T ss_dssp EEEETTTTEEEETT
T ss_pred ccCCcCcCChhhhc
Confidence 35799999999754
No 7
>d1zina2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=39.09 E-value=7.2 Score=23.60 Aligned_cols=14 Identities=21% Similarity=0.517 Sum_probs=11.3
Q ss_pred eeeCCCCCccccCC
Q 025330 227 KIYCPKCEDIYYPR 240 (254)
Q Consensus 227 KlYCP~C~DVY~P~ 240 (254)
+..||.|..+|+-.
T Consensus 2 Rr~C~~CG~~Yh~~ 15 (35)
T d1zina2 2 RRICRNCGATYHLI 15 (35)
T ss_dssp EEEETTTCCEEETT
T ss_pred ccCCcCcCchhccc
Confidence 36799999999843
No 8
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.75 E-value=12 Score=24.07 Aligned_cols=29 Identities=34% Similarity=0.872 Sum_probs=19.3
Q ss_pred CCCcccCCCCCccccccCCCCCCccceeeCCCCC
Q 025330 201 RCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCE 234 (254)
Q Consensus 201 ~CPRv~C~gq~lLPiGlSD~pg~stVKlYCP~C~ 234 (254)
.|++.+.- .+|...+..+|. -..|||.|.
T Consensus 26 ~C~~~~H~--~C~~~~~~~~~~---~~W~C~~C~ 54 (61)
T d1mm2a_ 26 TCPSSYHI--HCLNPPLPEIPN---GEWLCPRCT 54 (61)
T ss_dssp SSCCCBCS--SSSSSCCSSCCS---SCCCCTTTT
T ss_pred CCCccCch--hhcCCCcCcCCC---CcEECCCCc
Confidence 57887775 345555666554 368999994
No 9
>d1vqo31 g.41.8.3 (3:1-92) Ribosomal protein L44e {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=33.25 E-value=5.9 Score=28.88 Aligned_cols=11 Identities=36% Similarity=1.292 Sum_probs=9.4
Q ss_pred cceeeCCCCCc
Q 025330 225 TVKIYCPKCED 235 (254)
Q Consensus 225 tVKlYCP~C~D 235 (254)
+++-|||.|+.
T Consensus 6 ~~~tyCp~Ckk 16 (92)
T d1vqo31 6 RFNTYCPHCNE 16 (92)
T ss_dssp EEEEEETTTTE
T ss_pred ceeccCcccCC
Confidence 67899999974
No 10
>d1akya2 g.41.2.1 (A:131-168) Microbial and mitochondrial ADK, insert "zinc finger" domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=30.67 E-value=13 Score=22.69 Aligned_cols=14 Identities=14% Similarity=0.251 Sum_probs=11.2
Q ss_pred eeeCCCCCccccCC
Q 025330 227 KIYCPKCEDIYYPR 240 (254)
Q Consensus 227 KlYCP~C~DVY~P~ 240 (254)
+..||.|..+|+-.
T Consensus 2 Rr~C~~cG~~Yh~~ 15 (38)
T d1akya2 2 RLIHPASGRSYHKI 15 (38)
T ss_dssp EEECTTTCCEEETT
T ss_pred ccCCcCccchhhhh
Confidence 35799999999843
No 11
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=29.94 E-value=12 Score=25.31 Aligned_cols=20 Identities=25% Similarity=0.567 Sum_probs=10.3
Q ss_pred CCCCCccceeeCCCCCccccC
Q 025330 219 DIPRSSTVKIYCPKCEDIYYP 239 (254)
Q Consensus 219 D~pg~stVKlYCP~C~DVY~P 239 (254)
..-+...|.+|| -|..+|.+
T Consensus 4 gss~~~~~pv~C-iC~~~~~~ 23 (79)
T d1wepa_ 4 GSSGMALVPVYC-LCRQPYNV 23 (79)
T ss_dssp CCCCCCCCCCCS-TTSCSCCS
T ss_pred CcCCCCcCCeEe-ECCCccCC
Confidence 334445555666 46655543
No 12
>d2j0161 g.41.8.6 (6:9-53) Ribosomal protein L33p {Thermus thermophilus [TaxId: 274]}
Probab=27.95 E-value=11 Score=24.03 Aligned_cols=17 Identities=29% Similarity=0.894 Sum_probs=13.4
Q ss_pred CCCCCccceeeCCCCCc
Q 025330 219 DIPRSSTVKIYCPKCED 235 (254)
Q Consensus 219 D~pg~stVKlYCP~C~D 235 (254)
..|..-.+|-|||.|+.
T Consensus 21 n~p~rlelkKycp~c~k 37 (45)
T d2j0161 21 NTPNKLELRKYCPWCRK 37 (45)
T ss_dssp TSSCSSCCCCCCCSSSC
T ss_pred CCCccEEEeccCcCCCC
Confidence 34666778999999985
No 13
>d1cl4a_ g.40.1.1 (A:) Nucleocapsid protein from mason-pfizer monkey virus (MPMV) {Mason-pfizer monkey virus [TaxId: 11855]}
Probab=24.48 E-value=22 Score=21.26 Aligned_cols=14 Identities=21% Similarity=0.522 Sum_probs=10.6
Q ss_pred eCCCCCccccCCCC
Q 025330 229 YCPKCEDIYYPRSK 242 (254)
Q Consensus 229 YCP~C~DVY~P~s~ 242 (254)
-||+|+.=++=.+.
T Consensus 4 lCPrC~kG~HWa~~ 17 (32)
T d1cl4a_ 4 LCPRCKRGKHWANE 17 (32)
T ss_dssp SCSSCSSCSSCSTT
T ss_pred cCccccCcchHHHH
Confidence 59999998875443
No 14
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.35 E-value=14 Score=22.72 Aligned_cols=11 Identities=27% Similarity=0.939 Sum_probs=5.7
Q ss_pred eeCCCCCcccc
Q 025330 228 IYCPKCEDIYY 238 (254)
Q Consensus 228 lYCP~C~DVY~ 238 (254)
|+|-.|...||
T Consensus 16 i~Cd~C~~~~H 26 (51)
T d1f62a_ 16 ILCDECNKAFH 26 (51)
T ss_dssp EECTTTCCEEC
T ss_pred EEcCCCCCCCC
Confidence 44555555554
No 15
>d1r2za3 g.39.1.8 (A:229-274) DNA repair protein MutM (Fpg) {Bacillus stearothermophilus [TaxId: 1422]}
Probab=20.72 E-value=14 Score=23.06 Aligned_cols=12 Identities=33% Similarity=1.035 Sum_probs=9.1
Q ss_pred ccceeeCCCCCc
Q 025330 224 STVKIYCPKCED 235 (254)
Q Consensus 224 stVKlYCP~C~D 235 (254)
..---|||+|+.
T Consensus 35 gR~t~~Cp~CQK 46 (46)
T d1r2za3 35 GRGTHYCPRCQR 46 (46)
T ss_dssp TEEEEECTTTCC
T ss_pred CCcCEEChhhCC
Confidence 455679999974
No 16
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.21 E-value=44 Score=21.78 Aligned_cols=35 Identities=14% Similarity=0.301 Sum_probs=22.2
Q ss_pred CCCcccCCCCCccccccCCCCCCccceeeCCCCCccccCC
Q 025330 201 RCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPR 240 (254)
Q Consensus 201 ~CPRv~C~gq~lLPiGlSD~pg~stVKlYCP~C~DVY~P~ 240 (254)
.|++.|.-...-.| +..+|.. ..|||.|......+
T Consensus 24 ~C~~~~H~~C~~p~--l~~~p~~---~W~C~~C~~~~~~~ 58 (70)
T d1fp0a1 24 QCEFCFHLDCHLPA--LQDVPGE---EWSCSLCHVLPDLK 58 (70)
T ss_dssp TSSCEECTTSSSTT--CCCCCSS---SCCCCSCCCCCSSC
T ss_pred CCChhhccccCCCC--cCcCCCC---CEECcCCcCcCccC
Confidence 47887765543322 4555543 48999998776544
Done!