Query 025331
Match_columns 254
No_of_seqs 186 out of 607
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 04:45:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025331.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025331hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3225 Mitochondrial import i 99.9 5.8E-28 1.2E-32 204.4 4.3 125 44-180 39-165 (168)
2 TIGR00980 3a0801so1tim17 mitoc 99.9 3.9E-22 8.5E-27 171.7 11.3 119 49-185 16-134 (170)
3 PTZ00236 mitochondrial import 99.9 1.2E-21 2.6E-26 167.8 13.5 120 49-182 18-137 (164)
4 TIGR00983 3a0801s02tim23 mitoc 99.9 6.5E-22 1.4E-26 167.2 11.8 120 41-174 28-148 (149)
5 PF02466 Tim17: Tim17/Tim22/Ti 99.9 3.9E-21 8.5E-26 155.4 13.5 124 45-182 4-128 (128)
6 KOG1652 Mitochondrial import i 99.8 3.8E-20 8.3E-25 159.6 -0.0 119 42-182 12-131 (183)
7 COG5596 TIM22 Mitochondrial im 99.6 2E-17 4.4E-22 143.5 -0.9 160 12-181 12-189 (191)
8 KOG3324 Mitochondrial import i 99.6 3E-15 6.6E-20 131.0 8.3 124 44-181 74-198 (206)
9 PF00536 SAM_1: SAM domain (St 99.3 1.6E-12 3.4E-17 93.4 3.9 58 195-252 5-63 (64)
10 KOG4374 RNA-binding protein Bi 99.2 3.7E-12 8E-17 113.2 0.9 58 195-252 151-209 (216)
11 cd00166 SAM Sterile alpha moti 99.1 6.8E-11 1.5E-15 83.1 3.9 57 196-252 5-62 (63)
12 PF07647 SAM_2: SAM domain (St 99.0 2.3E-10 4.9E-15 82.5 2.9 57 196-252 7-65 (66)
13 smart00454 SAM Sterile alpha m 99.0 4.6E-10 9.9E-15 79.5 3.3 57 196-252 7-65 (68)
14 KOG3678 SARM protein (with ste 98.0 1.1E-05 2.4E-10 80.0 7.4 129 109-251 395-525 (832)
15 PF09597 IGR: IGR protein moti 97.4 7.5E-05 1.6E-09 54.1 1.8 53 198-253 1-55 (57)
16 COG5596 TIM22 Mitochondrial im 97.3 2.6E-05 5.6E-10 68.5 -1.7 79 101-181 77-165 (191)
17 KOG4608 Uncharacterized conser 97.2 0.00011 2.4E-09 67.0 0.9 113 98-216 127-256 (270)
18 KOG4384 Uncharacterized SAM do 97.0 0.00039 8.4E-09 66.3 2.4 56 196-251 216-273 (361)
19 TIGR00980 3a0801so1tim17 mitoc 92.6 1.1 2.5E-05 39.0 9.5 123 42-183 12-136 (170)
20 KOG1170 Diacylglycerol kinase 91.9 0.13 2.8E-06 54.3 3.1 58 195-252 1000-1058(1099)
21 KOG4375 Scaffold protein Shank 90.5 0.24 5.2E-06 46.0 3.2 53 198-250 215-268 (272)
22 KOG0196 Tyrosine kinase, EPH ( 89.8 0.16 3.5E-06 53.7 1.7 61 191-251 919-981 (996)
23 KOG4374 RNA-binding protein Bi 84.8 0.29 6.2E-06 44.3 0.0 52 198-249 120-173 (216)
24 PF10247 Romo1: Reactive mitoc 83.7 1.1 2.4E-05 33.6 2.7 64 46-121 2-67 (67)
25 KOG1398 Uncharacterized conser 81.1 2.2 4.8E-05 42.0 4.5 47 101-147 298-344 (460)
26 KOG4096 Uncharacterized conser 75.5 2.7 5.9E-05 32.1 2.6 66 45-122 5-72 (75)
27 TIGR03750 conj_TIGR03750 conju 74.1 12 0.00026 30.7 6.2 66 136-208 31-96 (111)
28 PF05957 DUF883: Bacterial pro 72.0 14 0.00029 28.5 5.9 15 50-64 77-91 (94)
29 KOG3791 Predicted RNA-binding 69.7 1.9 4.1E-05 44.0 0.7 50 198-249 478-528 (569)
30 PF11990 DUF3487: Protein of u 68.5 17 0.00037 30.0 6.0 64 136-206 34-97 (121)
31 PF06568 DUF1127: Domain of un 67.2 2.5 5.5E-05 28.0 0.7 19 221-239 17-35 (40)
32 PF02466 Tim17: Tim17/Tim22/Ti 65.3 36 0.00078 27.0 7.3 28 46-73 1-29 (128)
33 PF05957 DUF883: Bacterial pro 64.0 21 0.00046 27.4 5.5 51 19-69 40-92 (94)
34 PF13436 Gly-zipper_OmpA: Glyc 58.5 26 0.00057 28.5 5.3 48 130-181 50-97 (118)
35 TIGR01149 mtrG N5-methyltetrah 50.3 59 0.0013 24.7 5.6 55 13-68 8-63 (70)
36 PF13543 KSR1-SAM: SAM like do 49.8 7.3 0.00016 32.7 0.8 48 188-235 59-107 (129)
37 PF10439 Bacteriocin_IIc: Bact 49.5 41 0.00089 24.5 4.6 23 130-152 23-45 (65)
38 PRK10404 hypothetical protein; 49.0 25 0.00053 28.1 3.6 12 56-67 86-97 (101)
39 PRK01026 tetrahydromethanopter 47.6 66 0.0014 24.9 5.6 56 12-68 10-66 (77)
40 smart00540 LEM in nuclear memb 45.9 11 0.00024 26.0 1.0 16 226-241 5-24 (44)
41 KOG1899 LAR transmembrane tyro 45.1 21 0.00045 37.5 3.2 44 194-237 624-667 (861)
42 PRK10132 hypothetical protein; 40.4 62 0.0013 26.2 4.7 13 55-67 91-103 (108)
43 PF12597 DUF3767: Protein of u 37.8 64 0.0014 26.4 4.5 57 125-181 33-89 (118)
44 PF05818 TraT: Enterobacterial 37.7 45 0.00098 30.3 3.9 12 136-147 90-101 (215)
45 TIGR03595 Obg_CgtA_exten Obg f 37.2 25 0.00054 26.0 1.9 36 191-247 29-64 (69)
46 PF03020 LEM: LEM domain; Int 36.6 12 0.00027 25.7 0.1 12 230-241 13-24 (43)
47 COG5457 Uncharacterized conser 35.8 10 0.00022 28.2 -0.4 17 222-238 33-49 (63)
48 PRK13731 conjugal transfer sur 35.8 25 0.00053 32.6 2.0 19 130-148 110-128 (243)
49 KOG3930 Uncharacterized conser 35.1 21 0.00045 34.5 1.4 44 208-251 19-63 (389)
50 cd06406 PB1_P67 A PB1 domain i 33.9 19 0.00041 27.9 0.8 42 193-235 21-64 (80)
51 PF04210 MtrG: Tetrahydrometha 32.2 1.5E+02 0.0032 22.6 5.3 51 14-66 9-61 (70)
52 PRK10132 hypothetical protein; 32.0 1.8E+02 0.0039 23.5 6.2 17 49-65 89-105 (108)
53 PF13735 tRNA_NucTran2_2: tRNA 31.3 45 0.00098 27.0 2.7 25 227-251 105-131 (149)
54 TIGR01992 PTS-IIBC-Tre PTS sys 31.3 1.4E+02 0.003 29.7 6.6 66 104-176 345-417 (462)
55 PRK02898 cobalt transport prot 31.1 18 0.0004 29.1 0.3 49 23-71 41-93 (100)
56 PF07352 Phage_Mu_Gam: Bacteri 29.7 27 0.00058 29.2 1.1 44 194-239 92-138 (149)
57 PLN02720 complex II 29.5 63 0.0014 27.4 3.2 46 209-254 22-70 (140)
58 PRK10404 hypothetical protein; 29.5 2E+02 0.0044 22.9 6.1 17 49-65 83-99 (101)
59 PF04418 DUF543: Domain of unk 28.6 1.3E+02 0.0028 22.9 4.6 20 49-68 28-47 (75)
60 PF09269 DUF1967: Domain of un 27.9 22 0.00049 26.2 0.3 34 193-247 31-64 (69)
61 PTZ00236 mitochondrial import 26.8 4.3E+02 0.0093 23.0 10.5 26 43-68 15-41 (164)
62 PF03672 UPF0154: Uncharacteri 26.3 56 0.0012 24.3 2.1 18 51-68 4-21 (64)
63 PHA01516 hypothetical protein 26.0 32 0.0007 27.0 0.9 43 196-238 27-73 (98)
64 PF13099 DUF3944: Domain of un 25.9 15 0.00032 24.3 -0.9 17 219-235 5-21 (35)
65 PF00465 Fe-ADH: Iron-containi 25.9 99 0.0022 29.1 4.3 48 192-242 312-359 (366)
66 PF14019 DUF4235: Protein of u 25.5 3E+02 0.0064 20.8 6.1 48 135-182 9-63 (78)
67 PRK09796 PTS system cellobiose 25.4 1.7E+02 0.0037 29.5 6.0 69 103-176 333-407 (472)
68 COG4803 Predicted membrane pro 25.0 67 0.0014 28.1 2.7 55 14-68 12-76 (170)
69 PF12732 YtxH: YtxH-like prote 24.7 78 0.0017 23.2 2.7 21 51-71 2-22 (74)
70 PRK00523 hypothetical protein; 23.7 1E+02 0.0022 23.5 3.2 46 50-102 11-56 (72)
71 PRK01844 hypothetical protein; 22.4 88 0.0019 23.9 2.6 17 84-102 39-55 (72)
72 PLN02975 complex I subunit 22.3 2.4E+02 0.0051 22.7 5.1 29 160-188 57-88 (97)
73 COG1153 FwdD Formylmethanofura 22.3 23 0.00049 29.7 -0.6 35 213-247 21-55 (128)
74 PRK09586 murP PTS system N-ace 22.1 1.9E+02 0.004 29.2 5.6 65 104-176 341-414 (476)
75 COG5625 Predicted transcriptio 22.0 96 0.0021 25.4 2.9 33 2-34 72-108 (113)
76 COG4064 MtrG Tetrahydromethano 21.9 2.8E+02 0.006 21.2 5.1 56 14-70 12-68 (75)
77 PRK10510 putative outer membra 21.9 2.4E+02 0.0052 25.2 5.7 40 135-175 38-77 (219)
78 COG4575 ElaB Uncharacterized c 21.1 3E+02 0.0064 22.5 5.5 23 10-32 30-52 (104)
79 PRK13299 tRNA CCA-pyrophosphor 20.7 75 0.0016 30.9 2.4 27 225-251 344-372 (394)
80 COG3808 OVP1 Inorganic pyropho 20.6 2.5E+02 0.0055 29.3 6.1 74 131-238 517-593 (703)
No 1
>KOG3225 consensus Mitochondrial import inner membrane translocase, subunit TIM22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=5.8e-28 Score=204.42 Aligned_cols=125 Identities=19% Similarity=0.290 Sum_probs=109.2
Q ss_pred hhHHH-HHHHHHHHHHHHHHHHHhhhhcccCCCCCCC-CCCCCchhhhhhhhhhhhhhCCchHHHHHHHHHHHHHHHHHH
Q 025331 44 VEAAI-VTATTAINGAAIGAFLGVMTQDLTSSLPTPP-PQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISC 121 (254)
Q Consensus 44 ~E~cv-~T~~gav~Gg~lG~~~G~~~~~~~~~~~~~~-~~~~~~~~~~~~~k~~~~~~~~~~~~a~nFAviggvysg~ec 121 (254)
+++|+ |+++++|+|+++|+.+|+|.++++.+..+|. ...++++|+ +|+ |+.+++++++|||++|++|+++||
T Consensus 39 ~n~c~~Ka~~sgV~GfglG~~~GlFlas~d~~~~dP~i~~~~ar~q~---~kd---Mg~r~~s~~knF~~iGlvfsg~Ec 112 (168)
T KOG3225|consen 39 ENSCAVKAVKSGVTGFGLGGAFGLFLASLDTQPNDPTIYRMPARKQV---AKD---MGQRSGSYAKNFAIIGLVFSGVEC 112 (168)
T ss_pred hcchhHHHHHhhccccchhhhHHhhhhhcccCCCCCchhhhhhHHHH---HHH---HHhhhcchhhhhhhhhhhehhHHH
Confidence 34888 9999999999999999999999986522221 123455555 666 889999999999999999999999
Q ss_pred HHHHhhcccchhhHHHHHHHHhHHhhhccCCCCCChhHHHHHHHHHHHHHHHHHHHhhh
Q 025331 122 VMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKIGE 180 (254)
Q Consensus 122 ~ie~~Rgk~D~~Nsi~AG~~TGail~~~~G~~~~~~~~~ai~gga~fA~~sga~~~~g~ 180 (254)
++|++|.|+||+|++++||+||+.++.|+|| ++++.+|++|++||++|++.-+
T Consensus 113 ~iE~~RAK~D~~NgaiaG~vtGg~l~~raGp------~a~~~G~agfa~fS~~id~y~~ 165 (168)
T KOG3225|consen 113 LIESFRAKSDWYNGAIAGCVTGGSLGYRAGP------KAAAIGCAGFAAFSAAIDKYMR 165 (168)
T ss_pred HHHHHHhhhchhcceeeeeeeccchhhcccc------hhhhhchhHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999998 9999999999999999987643
No 2
>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17.
Probab=99.87 E-value=3.9e-22 Score=171.72 Aligned_cols=119 Identities=22% Similarity=0.224 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCchhhhhhhhhhhhhhCCchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025331 49 VTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRG 128 (254)
Q Consensus 49 ~T~~gav~Gg~lG~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~a~nFAviggvysg~ec~ie~~Rg 128 (254)
....++.+|.+.|.+++++.+-...+ ..+++...++. +..+..+++++||+||++|+++||+++++|+
T Consensus 16 ~~G~af~~G~~~G~~~g~~~G~rnsp---------~g~rl~g~l~a---v~~rap~~g~~Fav~g~lys~~ec~i~~~R~ 83 (170)
T TIGR00980 16 DFGGAFAMGTIGGSIFQAFKGFRNSP---------KGEKLVGAMRA---IKTRAPVLGGNFAVWGGLFSTIDCAVVAIRK 83 (170)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhcCC---------ccchhhHHHHH---HHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44566666777777777776443321 12345566654 5677889999999999999999999999999
Q ss_pred ccchhhHHHHHHHHhHHhhhccCCCCCChhHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 025331 129 KEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKIGEMWQST 185 (254)
Q Consensus 129 k~D~~Nsi~AG~~TGail~~~~G~~~~~~~~~ai~gga~fA~~sga~~~~g~~f~~~ 185 (254)
|||+||+++|||+||++|++++|+ ++++.+|++++++.++|+.+|-.++-+
T Consensus 84 KeD~~NsiiAG~~TGa~l~~r~G~------~a~~~~aa~gg~~la~ie~~g~~~~~~ 134 (170)
T TIGR00980 84 KEDPWNSIISGFLTGAALAVRGGP------RAMRGSAILGACILAVIEGVGLVLTRW 134 (170)
T ss_pred ccchHHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999997 999999999999999999887666433
No 3
>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional
Probab=99.87 E-value=1.2e-21 Score=167.82 Aligned_cols=120 Identities=20% Similarity=0.275 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCchhhhhhhhhhhhhhCCchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025331 49 VTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRG 128 (254)
Q Consensus 49 ~T~~gav~Gg~lG~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~a~nFAviggvysg~ec~ie~~Rg 128 (254)
....++.+|.+.|.+++++.+-...+ + .+++...++. ++.+.+++++|||+||++|+++||+++++|+
T Consensus 18 d~G~af~~G~vgG~~~~~~~G~rnsp-~--------g~rl~g~l~~---~~~rap~~g~~FAv~G~~ys~~ec~~~~~R~ 85 (164)
T PTZ00236 18 DMGGAFSMGCIGGFIWHFLKGMRNSP-K--------GERFSGGFYL---LRKRAPILGGNFAIWGGLFSTFDCTLQYLRG 85 (164)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhCC-C--------cchHHHHHHH---HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45566677766666666666554432 1 2345555554 5567889999999999999999999999999
Q ss_pred ccchhhHHHHHHHHhHHhhhccCCCCCChhHHHHHHHHHHHHHHHHHHHhhhhh
Q 025331 129 KEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKIGEMW 182 (254)
Q Consensus 129 k~D~~Nsi~AG~~TGail~~~~G~~~~~~~~~ai~gga~fA~~sga~~~~g~~f 182 (254)
|||+||+++|||+||++|++++|+ .+...+++.+|++++++.++-..+.+.+
T Consensus 86 K~D~~Nsi~AG~~TGa~l~~r~G~--~~~~~~a~~Gg~~~~~ie~~~i~~~~~~ 137 (164)
T PTZ00236 86 KEDHWNAIASGFFTGGVLAIRGGW--RSAVRNAIFGGILLGIIELVSIGMNRRQ 137 (164)
T ss_pred cCchHHHHHHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999997 1223455555555555555544444443
No 4
>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23.
Probab=99.87 E-value=6.5e-22 Score=167.19 Aligned_cols=120 Identities=23% Similarity=0.194 Sum_probs=103.0
Q ss_pred CchhhHH-HHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCchhhhhhhhhhhhhhCCchHHHHHHHHHHHHHHHH
Q 025331 41 PLPVEAA-IVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGI 119 (254)
Q Consensus 41 ~~~~E~c-v~T~~gav~Gg~lG~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~a~nFAviggvysg~ 119 (254)
....|+. .+|+.++++|.++|.++|++.+....+ +. .+.+.++...+++ ++.+..+++++||+|+++|+++
T Consensus 28 R~~~e~~~~~~G~ay~~G~~~Gg~~Gl~~G~~~~~-~~----~~~k~rln~~ln~---~~~~g~~~G~~~g~~g~lys~~ 99 (149)
T TIGR00983 28 RGWFEDLCFGTGTCYLTGLAIGALNGLRLGLKETQ-SM----PWTKLRLNQILNM---VTRRGPFWGNTLGILALVYNGI 99 (149)
T ss_pred CChhhhhhhhHhHHHHHHHHHHHHHHHHHHHhhCC-CC----CcHHHHHHHHHHH---HHhHhHHHHHHHHHHHHHHHHH
Confidence 3345544 499999999999999999999887542 11 1346678888876 6788889999999999999999
Q ss_pred HHHHHHhhcccchhhHHHHHHHHhHHhhhccCCCCCChhHHHHHHHHHHHHHHHH
Q 025331 120 SCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGC 174 (254)
Q Consensus 120 ec~ie~~Rgk~D~~Nsi~AG~~TGail~~~~G~~~~~~~~~ai~gga~fA~~sga 174 (254)
||.++++|+|||+||+++|||+||+++++++|+ ++++.+|++.+++.++
T Consensus 100 e~~i~~~R~k~D~~Nsv~AGa~TGal~~~~~G~------r~~~~g~~~G~~l~~~ 148 (149)
T TIGR00983 100 NSIIEATRGKHDDFNSVAAGALTGALYKSTRGL------RGMARSGALGATAAGV 148 (149)
T ss_pred HHHHHHHhccchhhHhHHHHHHHHHHHHhccCh------HHHHHHhHHHHHHhhc
Confidence 999999999999999999999999999999997 9999999998887764
No 5
>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []. The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].
Probab=99.86 E-value=3.9e-21 Score=155.43 Aligned_cols=124 Identities=28% Similarity=0.409 Sum_probs=102.4
Q ss_pred hHHH-HHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCchhhhhhhhhhhhhhCCchHHHHHHHHHHHHHHHHHHHH
Q 025331 45 EAAI-VTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVM 123 (254)
Q Consensus 45 E~cv-~T~~gav~Gg~lG~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~a~nFAviggvysg~ec~i 123 (254)
+.++ .++.+++.|.++|.+.+.+...... +...+.++++...++. ++......+.+||.++++|+++||.+
T Consensus 4 ~~~~~~~~~g~~~G~~~G~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~y~~~~~~l 75 (128)
T PF02466_consen 4 ERILDSTGKGFVAGAVFGGFIGAISAFTRP-----PRGSPLRPRLRSILNA---VGRRGPRHGARFGSFGGLYSGIECAL 75 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----ccCCcHhHHHHHHHHH---HhccchHHHHHHHHHHHHHHHHHHHH
Confidence 4444 7788888888888888887542111 1112345677788876 66677789999999999999999999
Q ss_pred HHhhcccchhhHHHHHHHHhHHhhhccCCCCCChhHHHHHHHHHHHHHHHHHHHhhhhh
Q 025331 124 KRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKIGEMW 182 (254)
Q Consensus 124 e~~Rgk~D~~Nsi~AG~~TGail~~~~G~~~~~~~~~ai~gga~fA~~sga~~~~g~~f 182 (254)
+++|+|||+||+++||++||++++++.|+ +.++.+++++++++++++..++++
T Consensus 76 ~~~R~k~D~~N~~~aG~~aGa~~~~~~g~------~~~~~~~~~~a~~~~~~~~~~~~~ 128 (128)
T PF02466_consen 76 ERLRGKDDPWNSAIAGAAAGAVLGLRSGP------RGMASGAALGAAFAAAVEYYGRMP 128 (128)
T ss_pred HHhhcccccchhHHHHHHHHHHHHhccCh------HHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999986 999999999999999999988764
No 6
>KOG1652 consensus Mitochondrial import inner membrane translocase, subunit TIM17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=3.8e-20 Score=159.64 Aligned_cols=119 Identities=19% Similarity=0.185 Sum_probs=95.8
Q ss_pred chhhHHH-HHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCchhhhhhhhhhhhhhCCchHHHHHHHHHHHHHHHHH
Q 025331 42 LPVEAAI-VTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGIS 120 (254)
Q Consensus 42 ~~~E~cv-~T~~gav~Gg~lG~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~a~nFAviggvysg~e 120 (254)
+.+++|- +++++.+.|.++.++-|..++..... ....+..+ ..+....|++||+||++||.++
T Consensus 12 riv~d~g~afamg~igG~~f~~ikG~~nap~G~r---------~~gg~~av-------~~~ap~~ggsFAvwgglfSt~d 75 (183)
T KOG1652|consen 12 RIVDDCGGAFAMGTIGGSVFQLIKGFRNAPSGAR---------LVGGISAV-------KMRAPQSGGSFAVWGGLFSTVD 75 (183)
T ss_pred eeeccccchhhhcccccceeeeeeeeecCCcccc---------cccchhhh-------hccCcccccceeeeechhhHHH
Confidence 4577787 88899999988888888877554321 11122222 2345678999999999999999
Q ss_pred HHHHHhhcccchhhHHHHHHHHhHHhhhccCCCCCChhHHHHHHHHHHHHHHHHHHHhhhhh
Q 025331 121 CVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKIGEMW 182 (254)
Q Consensus 121 c~ie~~Rgk~D~~Nsi~AG~~TGail~~~~G~~~~~~~~~ai~gga~fA~~sga~~~~g~~f 182 (254)
|++..+|+|||+||++++||+||++|+.++|+ ++++.+|+.|+++.+.++.++..+
T Consensus 76 C~Lv~~R~KeDpwNsivsGa~TGg~La~r~g~------~a~~~sa~~~g~~lamieg~g~~~ 131 (183)
T KOG1652|consen 76 CALVAIRKKEDPWNSIVSGAATGGLLAARGGP------KAMLTSAITGGLLLAMIEGLGIQV 131 (183)
T ss_pred HHHHHHhcccchHHHHHHHhhccceeeccccH------HHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999999999997 888888888888888888777655
No 7
>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2e-17 Score=143.54 Aligned_cols=160 Identities=16% Similarity=0.138 Sum_probs=130.6
Q ss_pred cCCChhhHHHHHHHHHHhHHHHHHHHHhCCchhhHHH-HHHHHHHHHHHHHHHHHhhhhcccCCCCC-------------
Q 025331 12 VQLPQKAIKDVQFKLKELENGYKSWLAKQPLPVEAAI-VTATTAINGAAIGAFLGVMTQDLTSSLPT------------- 77 (254)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~q~~~~E~cv-~T~~gav~Gg~lG~~~G~~~~~~~~~~~~------------- 77 (254)
+.|.+|+-+.+++. +.=.-+.+.........-+.|+ +++++.+.|+.+|...|.|+.++.+..+.
T Consensus 12 ~~~s~~~~~~lS~~-e~d~~~~~~l~~~~~~~~~~~i~k~~~s~l~G~~~g~~~g~f~ssl~y~t~~~~~~g~nfg~vwG 90 (191)
T COG5596 12 SPPSPNAYNILSPE-ERDPCPLEKLADFMKAFSYSCIGKSALSGLKGFRLGGPSGGFSSSLAYGTGLVHLLGLNFGGVWG 90 (191)
T ss_pred CCCCCCcccccChh-hcCchhhhHHhhhccchhhcchhhhhhhcccccccccccccchhhcccccccccccCcccccccc
Confidence 33445666666664 3334556666777777888999 99999999999999999999887641111
Q ss_pred ----CCCCCCCchhhhhhhhhhhhhhCCchHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHhHHhhhccCCC
Q 025331 78 ----PPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMG 153 (254)
Q Consensus 78 ----~~~~~~~~~~~~~~~k~~~~~~~~~~~~a~nFAviggvysg~ec~ie~~Rgk~D~~Nsi~AG~~TGail~~~~G~~ 153 (254)
.....+++.|++.++++ +..++...++|||++|..|++++|+|+.+|+|||+.|++.+|+.||+.+..+.|+
T Consensus 91 gl~~~i~~~~~r~q~~~~~~n---~~~rg~ftG~n~GvlGl~y~~~ns~I~~~r~k~d~~~~iaaG~~TGa~~~~~~g~- 166 (191)
T COG5596 91 GLFSTIDCTPFRLQLKEQLNN---AGKRGFFTGKNLGVLGLIYAGINSIITALRAKHDIANAIAAGAFTGAALASSAGP- 166 (191)
T ss_pred ceeeccccchHHHHHhhcccc---ccccccccccccceeeeecccchhhhhhhhhccccchhhhhhhhhhHHHHhhccc-
Confidence 11123466788888888 6788889999999999999999999999999999999999999999999999998
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHhhhh
Q 025331 154 GANPAVNAFTSGLLFAIFQGCSFKIGEM 181 (254)
Q Consensus 154 ~~~~~~~ai~gga~fA~~sga~~~~g~~ 181 (254)
+++..++++|+++++++....+.
T Consensus 167 -----qa~~~~~a~~aa~s~~~~~~~~~ 189 (191)
T COG5596 167 -----QAMPMGGAGFAAFSAGITLAMKS 189 (191)
T ss_pred -----cccccCccchhhhhhhHHhhhhc
Confidence 99999999999999999876554
No 8
>KOG3324 consensus Mitochondrial import inner membrane translocase, subunit TIM23 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=3e-15 Score=131.04 Aligned_cols=124 Identities=19% Similarity=0.152 Sum_probs=103.5
Q ss_pred hhHH-HHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCchhhhhhhhhhhhhhCCchHHHHHHHHHHHHHHHHHHH
Q 025331 44 VEAA-IVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCV 122 (254)
Q Consensus 44 ~E~c-v~T~~gav~Gg~lG~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~a~nFAviggvysg~ec~ 122 (254)
-|++ ..|..+|+.|+++|.+.|++..-.+.+ +..+.++++.++++. ...+...++++.++++.+|+++|+.
T Consensus 74 ~E~l~f~tG~~yl~G~~iGa~~G~~~Glk~~e-----~~~~~Klr~nrILN~---~t~~G~~~gN~lG~laL~Ysaiesg 145 (206)
T KOG3324|consen 74 FENLTFGTGWAYLTGSAIGAFNGLILGLKNTE-----NGASGKLRLNRILNS---VTRRGRFWGNTLGSLALMYSAIESG 145 (206)
T ss_pred hhhhheeccchhccchhhhhHHHHHHhhhcCC-----CCCccchhHHHHhhh---ccccccccccchhHHHHHHHHHHHH
Confidence 4454 499999999999999999999776542 123456777777776 3455567999999999999999999
Q ss_pred HHHhhcccchhhHHHHHHHHhHHhhhccCCCCCChhHHHHHHHHHHHHHHHHHHHhhhh
Q 025331 123 MKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKIGEM 181 (254)
Q Consensus 123 ie~~Rgk~D~~Nsi~AG~~TGail~~~~G~~~~~~~~~ai~gga~fA~~sga~~~~g~~ 181 (254)
|+..|++||++|+++||+.||+++....|+ +++.++++..+...+++....+.
T Consensus 146 I~~~R~~dd~lnsv~AGalTGalyrs~~Gl------r~~av~ga~g~~aa~aw~l~k~~ 198 (206)
T KOG3324|consen 146 IEATRGKDDDLNSVAAGALTGALYRSTRGL------RAAAVAGAVGGTAAAAWTLGKRI 198 (206)
T ss_pred HHHhhccccchhhhhhhhhhhhhhhcCCCc------hHHHHHHHHHHHHHHHHHHhhhH
Confidence 999999999999999999999999999996 99999999988888777554443
No 9
>PF00536 SAM_1: SAM domain (Sterile alpha motif); InterPro: IPR021129 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents type 1 SAM domains. ; PDB: 2KIV_A 3HIL_B 3KKA_A 3K1R_B 3SEN_B 3SEI_B 1V85_A 2KE7_A 2EAM_A 1WWV_A ....
Probab=99.31 E-value=1.6e-12 Score=93.42 Aligned_cols=58 Identities=31% Similarity=0.505 Sum_probs=53.8
Q ss_pred HHHHHHHHhhcCchhhHHHHhhccCCCccccCCChhhhhhCCCCC-ChhHHHHHHHhhc
Q 025331 195 YARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIPP-GPRLLILDHIQSF 252 (254)
Q Consensus 195 Ya~~~~~l~~Lgl~~y~~~f~~e~~~~~~l~~~~~~~Lk~~giP~-gpr~~il~~~~~~ 252 (254)
...+.++|+++||++|..+|+++.+|...|..+|++||++|||+. |||+||+..|+..
T Consensus 5 ~~~V~~WL~~~~l~~y~~~F~~~~i~g~~L~~lt~~dL~~lgi~~~ghr~ki~~~i~~L 63 (64)
T PF00536_consen 5 VEDVSEWLKSLGLEQYAENFEKNYIDGEDLLSLTEEDLEELGITKLGHRKKILRAIQKL 63 (64)
T ss_dssp HHHHHHHHHHTTGGGGHHHHHHTTSSHHHHTTSCHHHHHHTT-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHcCCchHHHHHhcCHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 457899999999999999999999999999999999999999988 9999999999864
No 10
>KOG4374 consensus RNA-binding protein Bicaudal-C [RNA processing and modification]
Probab=99.19 E-value=3.7e-12 Score=113.19 Aligned_cols=58 Identities=34% Similarity=0.373 Sum_probs=54.6
Q ss_pred HHHHHHHHhhcCchhhHHHHhhccCCCccccCCChhhhhhCCC-CCChhHHHHHHHhhc
Q 025331 195 YARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRI-PPGPRLLILDHIQSF 252 (254)
Q Consensus 195 Ya~~~~~l~~Lgl~~y~~~f~~e~~~~~~l~~~~~~~Lk~~gi-P~gpr~~il~~~~~~ 252 (254)
-+-+..+|..|||++|.+.|+.++|||++|++|||+|||+||| ++|||+||++.+...
T Consensus 151 ~~~vl~~L~~lglg~y~~~f~~~evd~~~l~~lte~dlk~~gi~~~GpRkKi~~A~~~~ 209 (216)
T KOG4374|consen 151 TEGVLMELGILGLGAYWKMFEAIEVDMDNLRLLTEEDLKDMGINSVGPRKKILCAIGKL 209 (216)
T ss_pred cchHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccchhhhhcccccCcchhhhhhhhcc
Confidence 4567899999999999999999999999999999999999999 999999999998754
No 11
>cd00166 SAM Sterile alpha motif.; Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerization.
Probab=99.10 E-value=6.8e-11 Score=83.11 Aligned_cols=57 Identities=33% Similarity=0.519 Sum_probs=53.9
Q ss_pred HHHHHHHhhcCchhhHHHHhhccCCCccccCCChhhhhhCCCCC-ChhHHHHHHHhhc
Q 025331 196 ARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIPP-GPRLLILDHIQSF 252 (254)
Q Consensus 196 a~~~~~l~~Lgl~~y~~~f~~e~~~~~~l~~~~~~~Lk~~giP~-gpr~~il~~~~~~ 252 (254)
..+..+|+++|+++|...|++..+|...|+.+|++||++|||+. |+|+||++.+++.
T Consensus 5 ~~V~~wL~~~~~~~y~~~f~~~~i~g~~L~~l~~~dL~~lgi~~~g~r~~i~~~i~~l 62 (63)
T cd00166 5 EDVAEWLESLGLGQYADNFRENGIDGDLLLLLTEEDLKELGITLPGHRKKILKAIQKL 62 (63)
T ss_pred HHHHHHHHHcChHHHHHHHHHcCCCHHHHhHCCHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 36889999999999999999999999999999999999999998 9999999999864
No 12
>PF07647 SAM_2: SAM domain (Sterile alpha motif); InterPro: IPR011510 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents a second domain related to the SAM domain. ; GO: 0005515 protein binding; PDB: 1B0X_A 1X9X_B 1OW5_A 1V38_A 3BS7_A 3BS5_A 3TAD_A 3TAC_B 2K60_A 2DL0_A ....
Probab=99.00 E-value=2.3e-10 Score=82.49 Aligned_cols=57 Identities=30% Similarity=0.482 Sum_probs=53.7
Q ss_pred HHHHHHHhhcCchhhHHHHhhccCCC-ccccCCChhhhhhCCC-CCChhHHHHHHHhhc
Q 025331 196 ARTRGMLDKLGLQNYTKNFKRGLLTD-STLPLLTDSALRDVRI-PPGPRLLILDHIQSF 252 (254)
Q Consensus 196 a~~~~~l~~Lgl~~y~~~f~~e~~~~-~~l~~~~~~~Lk~~gi-P~gpr~~il~~~~~~ 252 (254)
..+..+|+++||++|..+|+...+|- +.|+.+|++||+++|| ++|+|+||++.+++-
T Consensus 7 ~~v~~WL~~~gl~~y~~~f~~~~i~g~~~L~~l~~~~L~~lGI~~~~~r~kll~~i~~L 65 (66)
T PF07647_consen 7 EDVAEWLKSLGLEQYADNFRENGIDGLEDLLQLTEEDLKELGITNLGHRRKLLSAIQEL 65 (66)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHTTCSHHHHHTTSCHHHHHHTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCcHHHHHHHHHcCCcHHHHHhhCCHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 36899999999999999999999999 9999999999999999 789999999999863
No 13
>smart00454 SAM Sterile alpha motif. Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerisation.
Probab=98.96 E-value=4.6e-10 Score=79.48 Aligned_cols=57 Identities=32% Similarity=0.546 Sum_probs=53.9
Q ss_pred HHHHHHHhhcCchhhHHHHhhccCCCccccCCC-hhhhhhCCC-CCChhHHHHHHHhhc
Q 025331 196 ARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLT-DSALRDVRI-PPGPRLLILDHIQSF 252 (254)
Q Consensus 196 a~~~~~l~~Lgl~~y~~~f~~e~~~~~~l~~~~-~~~Lk~~gi-P~gpr~~il~~~~~~ 252 (254)
..+..+|+.+|+++|...|++..+|...|..++ ++||+++|| ++|+|+||++.++..
T Consensus 7 ~~v~~wL~~~g~~~y~~~f~~~~i~g~~ll~~~~~~~l~~lgi~~~~~r~~ll~~i~~l 65 (68)
T smart00454 7 ESVADWLESIGLEQYADNFRKNGIDGALLLLLTSEEDLKELGITKLGHRKKILKAIQKL 65 (68)
T ss_pred HHHHHHHHHCChHHHHHHHHHCCCCHHHHHhcChHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999 999999999 899999999999864
No 14
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.04 E-value=1.1e-05 Score=80.03 Aligned_cols=129 Identities=22% Similarity=0.286 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHhHHhhhccCCCCCChhHHHHHHHHHHHHHHHHHHHhhhhhhccCCC
Q 025331 109 FAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKIGEMWQSTQRP 188 (254)
Q Consensus 109 FAviggvysg~ec~ie~~Rgk~D~~Nsi~AG~~TGail~~~~G~~~~~~~~~ai~gga~fA~~sga~~~~g~~f~~~~~~ 188 (254)
--.+|+.|=+.|.+|+++.+|-|+..-| ||+-+++.=-+.|+.+.+.+ .+-++-.+|+..-..--+
T Consensus 395 Aq~i~AF~l~~EAaIKs~Q~K~kVFseI------GAIQaLKevaSS~d~vaakf--------AseALtviGEEVP~~l~~ 460 (832)
T KOG3678|consen 395 AQCIGAFYLCAEAAIKSLQGKTKVFSEI------GAIQALKEVASSPDEVAAKF--------ASEALTVIGEEVPYKLAQ 460 (832)
T ss_pred hhhhHHHHHHHHHHHHHhccchhHHHHH------HHHHHHHHHhcCchHHHHHH--------HHHHHHHhccccChhhhc
Confidence 3468999999999999999999998776 55555543222333333332 233344444433110001
Q ss_pred CchhhHHHHHHHHHhhcCchhhHHHHhhccCCCccccCCChhhhh-hCCCCCC-hhHHHHHHHhh
Q 025331 189 TADDVYYARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALR-DVRIPPG-PRLLILDHIQS 251 (254)
Q Consensus 189 ~~~d~~Ya~~~~~l~~Lgl~~y~~~f~~e~~~~~~l~~~~~~~Lk-~~giP~g-pr~~il~~~~~ 251 (254)
..-.-.++.+..++|+.|.++|+..|.+.++|-+-|..+||+||| |+|.--| .||+.|.+++.
T Consensus 461 qVPgWt~AdVQ~WvkkIGFeeY~EkFakQ~VDGDLLLqLTEndLk~DvGM~SGl~RKRFlRELqt 525 (832)
T KOG3678|consen 461 QVPGWTCADVQYWVKKIGFEEYVEKFAKQMVDGDLLLQLTENDLKHDVGMISGLHRKRFLRELQT 525 (832)
T ss_pred cCCCcchHHHHHHHHHhCHHHHHHHHHHHhccchHHHhhhhhhhhhhhhhhhhhhHHHHHHHHHH
Confidence 011114667888999999999999999999999999999999998 7887766 69999988864
No 15
>PF09597 IGR: IGR protein motif; InterPro: IPR019083 This entry is found in fungal and plant proteins and contains a conserved IGR motif. Its function is unknown.
Probab=97.41 E-value=7.5e-05 Score=54.13 Aligned_cols=53 Identities=19% Similarity=0.300 Sum_probs=46.9
Q ss_pred HHHHHhhcC--chhhHHHHhhccCCCccccCCChhhhhhCCCCCChhHHHHHHHhhcc
Q 025331 198 TRGMLDKLG--LQNYTKNFKRGLLTDSTLPLLTDSALRDVRIPPGPRLLILDHIQSFC 253 (254)
Q Consensus 198 ~~~~l~~Lg--l~~y~~~f~~e~~~~~~l~~~~~~~Lk~~giP~gpr~~il~~~~~~~ 253 (254)
++.||+..| +++|...|+.+ -+.|..++-.+|||+|||+=-|+-||.+.+++|
T Consensus 1 V~tFL~~IGR~~~~~~~kf~~~---w~~lf~~~s~~LK~~GIp~r~RryiL~~~ek~r 55 (57)
T PF09597_consen 1 VETFLKLIGRGCEEHAEKFESD---WEKLFTTSSKQLKELGIPVRQRRYILRWREKYR 55 (57)
T ss_pred CHHHHHHHcccHHHHHHHHHHH---HHHHHhcCHHHHHHCCCCHHHHHHHHHHHHHHh
Confidence 467888887 99999999773 388889999999999999999999999999876
No 16
>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=2.6e-05 Score=68.51 Aligned_cols=79 Identities=20% Similarity=0.235 Sum_probs=63.0
Q ss_pred CchHHHHHHH-HHHHHHHHHHHHHHHhhcccchhhHHHHHHHHhHHhhhccCCCCCChhHHHHH---------HHHHHHH
Q 025331 101 GPLVQARNFA-VITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFT---------SGLLFAI 170 (254)
Q Consensus 101 ~~~~~a~nFA-viggvysg~ec~ie~~Rgk~D~~Nsi~AG~~TGail~~~~G~~~~~~~~~ai~---------gga~fA~ 170 (254)
.....+.||| +||++++.++|+..++|.++|.||....|+.||..++..... .+.+.+.|. +++.+++
T Consensus 77 ~~~~~g~nfg~vwGgl~~~i~~~~~r~q~~~~~~n~~~rg~ftG~n~GvlGl~--y~~~ns~I~~~r~k~d~~~~iaaG~ 154 (191)
T COG5596 77 LVHLLGLNFGGVWGGLFSTIDCTPFRLQLKEQLNNAGKRGFFTGKNLGVLGLI--YAGINSIITALRAKHDIANAIAAGA 154 (191)
T ss_pred cccccCccccccccceeeccccchHHHHHhhccccccccccccccccceeeee--cccchhhhhhhhhccccchhhhhhh
Confidence 3446788999 999999999999999999999999999999999988877654 223455665 6777777
Q ss_pred HHHHHHHhhhh
Q 025331 171 FQGCSFKIGEM 181 (254)
Q Consensus 171 ~sga~~~~g~~ 181 (254)
+.|+..+.-.-
T Consensus 155 ~TGa~~~~~~g 165 (191)
T COG5596 155 FTGAALASSAG 165 (191)
T ss_pred hhhHHHHhhcc
Confidence 77777655443
No 17
>KOG4608 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.21 E-value=0.00011 Score=66.96 Aligned_cols=113 Identities=19% Similarity=0.206 Sum_probs=76.9
Q ss_pred hhCCchHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHhHHhhhccCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 025331 98 VAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFK 177 (254)
Q Consensus 98 ~~~~~~~~a~nFAviggvysg~ec~ie~~Rgk~D~~Nsi~AG~~TGail~~~~G~~~~~~~~~ai~gga~fA~~sga~~~ 177 (254)
+..+++.+|-..|++.+.|-++...+.-+|+|+|.||=++||.+||+++.+.-|.++ .+.+.+.|+.+.+.+++....
T Consensus 127 farGgf~~G~R~alfttSff~l~t~l~vyRgk~a~~~fvaaga~tgsvF~~~~gL~g--~aa~vilG~~lG~tv~~~l~l 204 (270)
T KOG4608|consen 127 FARGGFRWGWRTALFTTSFFTLNTSLNVYRGKDALSHFVAAGAVTGSVFRINVGLRG--LAAGVILGALLGTTVGGLLML 204 (270)
T ss_pred HhhccccceeEEeeehhhHHHHHHHHHHHcCchhhhhhhccccceeeeEEeehhhHH--HhhcceeehhhcchHHHHHHH
Confidence 456778888889999999999999999999999999999999999999998877532 134444455444444444433
Q ss_pred hhhhhhccCCCCchhhH-----------------HHHHHHHHhhcCchhhHHHHhh
Q 025331 178 IGEMWQSTQRPTADDVY-----------------YARTRGMLDKLGLQNYTKNFKR 216 (254)
Q Consensus 178 ~g~~f~~~~~~~~~d~~-----------------Ya~~~~~l~~Lgl~~y~~~f~~ 216 (254)
+.... .++ .+|.+ -+++++.++.+.-+.-.+.|++
T Consensus 205 ~q~a~---~k~-vnE~~~l~~~dyk~~l~vts~~~~aie~L~q~e~~e~~~~~~ka 256 (270)
T KOG4608|consen 205 FQKAS---GKT-VNERKQLKLEDYKGRLQVTSHLPEAIESLLQEEEPENDAKKIKA 256 (270)
T ss_pred HHHHh---CCc-HHHHHHHHHHhhccccccccchHHHHHHHHHHhCchhHHHHHHH
Confidence 33322 222 11111 3566667777776655555554
No 18
>KOG4384 consensus Uncharacterized SAM domain protein [General function prediction only]
Probab=96.99 E-value=0.00039 Score=66.34 Aligned_cols=56 Identities=21% Similarity=0.322 Sum_probs=49.4
Q ss_pred HHHHHHHhhcCchhhHHHHhhcc-CCCccccCCChhhhhhCCCC-CChhHHHHHHHhh
Q 025331 196 ARTRGMLDKLGLQNYTKNFKRGL-LTDSTLPLLTDSALRDVRIP-PGPRLLILDHIQS 251 (254)
Q Consensus 196 a~~~~~l~~Lgl~~y~~~f~~e~-~~~~~l~~~~~~~Lk~~giP-~gpr~~il~~~~~ 251 (254)
..++++|..++|++|...|-.-- =|.+.+.+|+|+||.|+||- |+.|+|||..|+.
T Consensus 216 ~~~~ewL~~i~le~y~~~~L~nGYd~le~~k~i~e~dL~~lgI~nP~Hr~kLL~av~~ 273 (361)
T KOG4384|consen 216 KSLEEWLRRIGLEEYIETLLENGYDTLEDLKDITEEDLEELGIDNPDHRKKLLSAVEL 273 (361)
T ss_pred hHHHHHHHHhhHHHHHHHHHHcchHHHHHHHhccHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 47899999999999999975544 45999999999999999995 7999999998874
No 19
>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17.
Probab=92.63 E-value=1.1 Score=39.03 Aligned_cols=123 Identities=11% Similarity=0.034 Sum_probs=90.5
Q ss_pred chhhHHH-HHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCchhhhh-hhhhhhhhhCCchHHHHHHHHHHHHHHHH
Q 025331 42 LPVEAAI-VTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVA-PFQQVQAVAGGPLVQARNFAVITGVNAGI 119 (254)
Q Consensus 42 ~~~E~cv-~T~~gav~Gg~lG~~~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~~~~~~~~~~a~nFAviggvysg~ 119 (254)
+++++|. .-.+|.+.|++.|++-|+-+...... +...++ +.+++-.++ ...+.--+++.++...+
T Consensus 12 r~~d~~G~af~~G~~~G~~~g~~~G~rnsp~g~r----------l~g~l~av~~rap~~g---~~Fav~g~lys~~ec~i 78 (170)
T TIGR00980 12 RILDDFGGAFAMGTIGGSIFQAFKGFRNSPKGEK----------LVGAMRAIKTRAPVLG---GNFAVWGGLFSTIDCAV 78 (170)
T ss_pred hhHHhhhHHHHHHHHHHHHHHHHHHhhcCCccch----------hhHHHHHHHhhhhhHH---HHHHHHHHHHHHHHHHH
Confidence 4678888 78888888988888888887645442 123333 333332233 36677778888899999
Q ss_pred HHHHHHhhcccchhhHHHHHHHHhHHhhhccCCCCCChhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 025331 120 SCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKIGEMWQ 183 (254)
Q Consensus 120 ec~ie~~Rgk~D~~Nsi~AG~~TGail~~~~G~~~~~~~~~ai~gga~fA~~sga~~~~g~~f~ 183 (254)
+..-++-=-.+-+.-..+.|.+-++-=+.+.- +.+++.+++++++|.++-..+.+...
T Consensus 79 ~~~R~KeD~~NsiiAG~~TGa~l~~r~G~~a~------~~~aa~gg~~la~ie~~g~~~~~~~~ 136 (170)
T TIGR00980 79 VAIRKKEDPWNSIISGFLTGAALAVRGGPRAM------RGSAILGACILAVIEGVGLVLTRWAA 136 (170)
T ss_pred HHHhcccchHHHHHHHHHHHHHHHhccChHHH------HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 87766655588899999999998887776655 48999999999999999888766654
No 20
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=91.88 E-value=0.13 Score=54.29 Aligned_cols=58 Identities=24% Similarity=0.409 Sum_probs=53.1
Q ss_pred HHHHHHHHhhcCchhhHHHHhhccCCCccccCCChhhhhhCCCC-CChhHHHHHHHhhc
Q 025331 195 YARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIP-PGPRLLILDHIQSF 252 (254)
Q Consensus 195 Ya~~~~~l~~Lgl~~y~~~f~~e~~~~~~l~~~~~~~Lk~~giP-~gpr~~il~~~~~~ 252 (254)
-..+...|+.++|.+|...|.|--|--..|.+|.-+||||+||- .|.=|+||..|++.
T Consensus 1000 seeV~awLe~~~LsEy~d~f~kndirGseLl~L~rrDLkdlgvtkVGhvkril~aIkdl 1058 (1099)
T KOG1170|consen 1000 SEEVCAWLESIGLSEYKDTFRKNDIRGSELLHLERRDLKDLGVTKVGHVKRILSAIKDL 1058 (1099)
T ss_pred HHHHHHHHhccccchhhhhhhccCcccceeeecCcccccccchhhhHHHHHHHHHHHHH
Confidence 45677789999999999999999999999999999999999986 59999999999754
No 21
>KOG4375 consensus Scaffold protein Shank and related SAM domain proteins [Signal transduction mechanisms]
Probab=90.51 E-value=0.24 Score=45.97 Aligned_cols=53 Identities=25% Similarity=0.386 Sum_probs=48.6
Q ss_pred HHHHHhhcCchhhHHHHhhccCCCccccCCChhhhhhCCCC-CChhHHHHHHHh
Q 025331 198 TRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIP-PGPRLLILDHIQ 250 (254)
Q Consensus 198 ~~~~l~~Lgl~~y~~~f~~e~~~~~~l~~~~~~~Lk~~giP-~gpr~~il~~~~ 250 (254)
+-.+|.+|+|.+|...|+.-+||-..|++|+.+|+.++|+- .|.|.-|=..++
T Consensus 215 V~dWLssl~L~E~~~aF~d~eIdG~hLp~l~k~df~~LGVTRVgHRmnIerALr 268 (272)
T KOG4375|consen 215 VNDWLSSLHLIEYDDAFHDIEIDGKHLPLLRKLDFRGLGVTRVGHRMNIERALR 268 (272)
T ss_pred HHHHHHhhhhhhcchhhhhcccccchhhhcchhhhhcccchhhhhHHHHHHHHH
Confidence 67899999999999999999999999999999999999986 488888876665
No 22
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=89.85 E-value=0.16 Score=53.68 Aligned_cols=61 Identities=18% Similarity=0.273 Sum_probs=54.0
Q ss_pred hhhHHHHHHHHHhhcCchhhHHHHhhc-cCCCccccCCChhhhhhCCCCC-ChhHHHHHHHhh
Q 025331 191 DDVYYARTRGMLDKLGLQNYTKNFKRG-LLTDSTLPLLTDSALRDVRIPP-GPRLLILDHIQS 251 (254)
Q Consensus 191 ~d~~Ya~~~~~l~~Lgl~~y~~~f~~e-~~~~~~l~~~~~~~Lk~~giP~-gpr~~il~~~~~ 251 (254)
+..-|-++.++|+..+++.|..+|.+. --+++.+..+|-+||..+||-+ |+-||||+.|+.
T Consensus 919 ~~~~f~sv~~WL~aIkm~rY~~~F~~ag~~s~~~V~q~s~eDl~~~Gitl~GhqkkIl~SIq~ 981 (996)
T KOG0196|consen 919 DFTPFRSVGDWLEAIKMGRYKEHFAAAGYTSFEDVAQMSAEDLLRLGITLAGHQKKILSSIQA 981 (996)
T ss_pred CCcccCCHHHHHHHhhhhHHHHHHHhcCcccHHHHHhhhHHHHHhhceeecchhHHHHHHHHH
Confidence 334588999999999999999999764 5578999999999999999985 999999999974
No 23
>KOG4374 consensus RNA-binding protein Bicaudal-C [RNA processing and modification]
Probab=84.76 E-value=0.29 Score=44.27 Aligned_cols=52 Identities=27% Similarity=0.429 Sum_probs=44.5
Q ss_pred HHHHHhh-cCchhhHHHHhhccCCCccccCCChhhhhhCCCC-CChhHHHHHHH
Q 025331 198 TRGMLDK-LGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIP-PGPRLLILDHI 249 (254)
Q Consensus 198 ~~~~l~~-Lgl~~y~~~f~~e~~~~~~l~~~~~~~Lk~~giP-~gpr~~il~~~ 249 (254)
.+.++++ ++|++|.+.|...++|..++.-++|..|++++|= +|-|.+.+..+
T Consensus 120 ~~~~~~~~~~l~s~~~~~~~~~~~l~~~~t~~~~vl~~L~~lglg~y~~~f~~~ 173 (216)
T KOG4374|consen 120 IQSLLTSRLGLESYIKEFNLQEIDLQTFGTLTEGVLMELGILGLGAYWKMFEAI 173 (216)
T ss_pred hhhHHHHhhcccccchhhhcchHhhhhcccccchHHHHHHHHhHHHHHHHHHHH
Confidence 5677777 9999999999999999999999999999999984 57777766544
No 24
>PF10247 Romo1: Reactive mitochondrial oxygen species modulator 1; InterPro: IPR018450 The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain. An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. This entry contains the mitochondrial protein, reactive oxygen species modulator 1 (Romo1), that is responsible for increasing the level of ROS in cells. In various cancer cell lines with elevated levels of ROS there is also an increased abundance of Romo1 []. Increased Romo1 expression can have a number of other affects including: inducing premature senescence of cultured human fibroblasts [, ] and increased resistance to 5-fluorouracil [].
Probab=83.70 E-value=1.1 Score=33.62 Aligned_cols=64 Identities=13% Similarity=0.233 Sum_probs=33.6
Q ss_pred HHH-HHHHHHHHHHHHHHHHHhhhhcccC-CCCCCCCCCCCchhhhhhhhhhhhhhCCchHHHHHHHHHHHHHHHHHH
Q 025331 46 AAI-VTATTAINGAAIGAFLGVMTQDLTS-SLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISC 121 (254)
Q Consensus 46 ~cv-~T~~gav~Gg~lG~~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~a~nFAviggvysg~ec 121 (254)
+|. +--+++.+|+.+|..+|.+....+. ....++ + .+++.+ +.-....+..|+.+=++=+.++|
T Consensus 2 sc~~kikmG~~MG~~VG~~~G~l~G~~~~~r~g~~~-----~-~~~~~l------g~~~l~sg~tFG~Fm~iGs~IRc 67 (67)
T PF10247_consen 2 SCFDKIKMGFMMGGAVGGAFGALFGTFSAFRYGARG-----R-GLMRTL------GKYMLGSGATFGFFMSIGSVIRC 67 (67)
T ss_pred cHHHHHHHHHHHhhHHHhhhhhhhhhHHHhccCCCC-----c-chHhHH------hHHHhcchhHHHHHHhhhccccC
Confidence 455 5566667776666666666655443 111121 1 223332 23334566777777666665554
No 25
>KOG1398 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.15 E-value=2.2 Score=42.01 Aligned_cols=47 Identities=13% Similarity=0.157 Sum_probs=40.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHhHHhh
Q 025331 101 GPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFS 147 (254)
Q Consensus 101 ~~~~~a~nFAviggvysg~ec~ie~~Rgk~D~~Nsi~AG~~TGail~ 147 (254)
.....+.-.+.+-++|.++.|+..+++-+||..|++.||++++..+.
T Consensus 298 enlqlg~FlgsfvfIfkatsC~lr~v~n~dd~l~aifAgglAs~Smm 344 (460)
T KOG1398|consen 298 ENLQLGSFLGSFVFIFKATSCALRKVANKDDKLVAIFAGGLASLSMM 344 (460)
T ss_pred ccchhhHHHHHHHHHHHhHHHHHHHhccCcHHHHHHHHhhhhhheee
Confidence 44456667888999999999999999999999999999999886553
No 26
>KOG4096 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.54 E-value=2.7 Score=32.06 Aligned_cols=66 Identities=21% Similarity=0.382 Sum_probs=39.1
Q ss_pred hHHH-HHHHHHHHHHHHHHHHHhhhhcccCCCCC-CCCCCCCchhhhhhhhhhhhhhCCchHHHHHHHHHHHHHHHHHHH
Q 025331 45 EAAI-VTATTAINGAAIGAFLGVMTQDLTSSLPT-PPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCV 122 (254)
Q Consensus 45 E~cv-~T~~gav~Gg~lG~~~G~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~~~~~~~~~~~~a~nFAviggvysg~ec~ 122 (254)
.+|+ |--++.++|+.+|...|.+....+. ++. ++ -..+++. ++.-....+.+|+.+=++=++++|.
T Consensus 5 pSc~dKikmG~~mG~avG~a~G~lfGgf~~-lR~g~~-----g~~~vr~------iGkt~~~SagtFG~FM~igs~Ir~~ 72 (75)
T KOG4096|consen 5 PSCFDKIKMGLMMGGAVGGATGALFGGFAA-LRYGPR-----GRGLVRT------IGKTMLQSAGTFGLFMGIGSGIRCG 72 (75)
T ss_pred ccHHHHHHHHHHHHhhhhhhhhhhccchhh-eeecCC-----hhHHHHH------HhHHHHhccchhhhhhhhhhheecC
Confidence 3677 6666667776666666666654433 111 11 1233333 2334556778899988888888875
No 27
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=74.13 E-value=12 Score=30.66 Aligned_cols=66 Identities=20% Similarity=0.287 Sum_probs=39.2
Q ss_pred HHHHHHHhHHhhhccCCCCCChhHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHhhcCch
Q 025331 136 VVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKIGEMWQSTQRPTADDVYYARTRGMLDKLGLQ 208 (254)
Q Consensus 136 i~AG~~TGail~~~~G~~~~~~~~~ai~gga~fA~~sga~~~~g~~f~~~~~~~~~d~~Ya~~~~~l~~Lgl~ 208 (254)
.++|++.|..+++..|. -+++-.|++.+.+.+ +...++.++..+.-.+|--.|-+++..+.++++.
T Consensus 31 ~~~gl~~g~~l~~~~~~------w~~~p~~~lig~~l~-v~~gg~~l~rlKRGrPe~yl~r~l~~~~~~~~l~ 96 (111)
T TIGR03750 31 LAAGLVLGLLLALLAGP------WALIPTGALLGPILV-VLIGGKLLARLKRGKPEGYLYRKLEWKLARLGLG 96 (111)
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH-HHHhHHHHHHHHcCCCchHHHHHHHHHHHHcCCC
Confidence 34455555555555553 444445555554443 3344666666665445666799999999998864
No 28
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=71.98 E-value=14 Score=28.46 Aligned_cols=15 Identities=27% Similarity=0.301 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 025331 50 TATTAINGAAIGAFL 64 (254)
Q Consensus 50 T~~gav~Gg~lG~~~ 64 (254)
.+++++.|+++|.++
T Consensus 77 vgiAagvG~llG~Ll 91 (94)
T PF05957_consen 77 VGIAAGVGFLLGLLL 91 (94)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 29
>KOG3791 consensus Predicted RNA-binding protein involved in translational regulation [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=69.70 E-value=1.9 Score=44.03 Aligned_cols=50 Identities=30% Similarity=0.359 Sum_probs=43.8
Q ss_pred HHHHHhhcCchhhHHHHhhccCCCccccCCChhhhhhCCCC-CChhHHHHHHH
Q 025331 198 TRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIP-PGPRLLILDHI 249 (254)
Q Consensus 198 ~~~~l~~Lgl~~y~~~f~~e~~~~~~l~~~~~~~Lk~~giP-~gpr~~il~~~ 249 (254)
.-++|++|+|.||...|+. -+-+++.+++|.+|+.+||= .|-|+|.|...
T Consensus 478 ip~WLkslrlhKyt~~~~~--t~~~e~l~ls~~~l~~~Gv~a~g~~~~~L~~~ 528 (569)
T KOG3791|consen 478 IPEWLKSLRLHKYTNALKS--TTWFELLILSDMKLQHVGVLALGARRKLLKAF 528 (569)
T ss_pred chHHHHhccchhhhccccC--ccHHHhhccchhhcccchhhhhhHHHhhhccc
Confidence 3578999999999999999 99999999999999999985 47788877654
No 30
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=68.45 E-value=17 Score=30.00 Aligned_cols=64 Identities=22% Similarity=0.331 Sum_probs=37.0
Q ss_pred HHHHHHHhHHhhhccCCCCCChhHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHhhcC
Q 025331 136 VVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKIGEMWQSTQRPTADDVYYARTRGMLDKLG 206 (254)
Q Consensus 136 i~AG~~TGail~~~~G~~~~~~~~~ai~gga~fA~~sga~~~~g~~f~~~~~~~~~d~~Ya~~~~~l~~Lg 206 (254)
.++|++.|..++.-.|. .+++-+|+..+.+.+++ ..++.++..+.-.+|--.|.+++..|.++|
T Consensus 34 ~~~g~~~gl~la~~~g~------~a~~pt~~ll~~~~~v~-~gg~~l~rlKRGKP~~yl~r~l~~~l~~~g 97 (121)
T PF11990_consen 34 FVAGLVVGLPLALLTGW------WAMIPTGALLGPILGVF-VGGKLLARLKRGKPEGYLYRRLQWRLARRG 97 (121)
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH-HhHHHHHHHHcCCchhHHHHHHHHHHHHhc
Confidence 44556666666666664 33444444444444333 334445555544445557889999998876
No 31
>PF06568 DUF1127: Domain of unknown function (DUF1127); InterPro: IPR009506 This family is found in several hypothetical bacterial proteins. In some cases it represents it represents the C-terminal region whereas in others it represents the whole sequence.
Probab=67.20 E-value=2.5 Score=28.04 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=15.8
Q ss_pred CccccCCChhhhhhCCCCC
Q 025331 221 DSTLPLLTDSALRDVRIPP 239 (254)
Q Consensus 221 ~~~l~~~~~~~Lk~~giP~ 239 (254)
..+|.-|+|..|+|+||.-
T Consensus 17 r~~L~~Lsd~~L~DIGl~R 35 (40)
T PF06568_consen 17 RRELAELSDRQLADIGLTR 35 (40)
T ss_pred HHHHccCCHHHHHHcCCCH
Confidence 3567889999999999963
No 32
>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []. The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].
Probab=65.35 E-value=36 Score=27.04 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=23.9
Q ss_pred HHH-HHHHHHHHHHHHHHHHHhhhhcccC
Q 025331 46 AAI-VTATTAINGAAIGAFLGVMTQDLTS 73 (254)
Q Consensus 46 ~cv-~T~~gav~Gg~lG~~~G~~~~~~~~ 73 (254)
+|. ++..+.+.|+++|+++|.+....+.
T Consensus 1 ~c~~~~~~~~~~g~~~G~~~G~~~~~~~~ 29 (128)
T PF02466_consen 1 SCPERILDSTGKGFVAGAVFGGFIGAISA 29 (128)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477 8899999999999999999988643
No 33
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=64.00 E-value=21 Score=27.38 Aligned_cols=51 Identities=12% Similarity=0.172 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHhCCchhhHHH--HHHHHHHHHHHHHHHHHhhhh
Q 025331 19 IKDVQFKLKELENGYKSWLAKQPLPVEAAI--VTATTAINGAAIGAFLGVMTQ 69 (254)
Q Consensus 19 ~~~~~~~~~~~~~~~~~w~~~q~~~~E~cv--~T~~gav~Gg~lG~~~G~~~~ 69 (254)
+++.+.++++...+.+...+......+..| +=..+.....++|+++|.+..
T Consensus 40 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~e~P~~svgiAagvG~llG~Ll~ 92 (94)
T PF05957_consen 40 LDDARDRAEDAADQAREQAREAAEQTEDYVRENPWQSVGIAAGVGFLLGLLLR 92 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444334444445 457778888888888888753
No 34
>PF13436 Gly-zipper_OmpA: Glycine-zipper containing OmpA-like membrane domain
Probab=58.51 E-value=26 Score=28.48 Aligned_cols=48 Identities=17% Similarity=0.082 Sum_probs=27.2
Q ss_pred cchhhHHHHHHHHhHHhhhccCCCCCChhHHHHHHHHHHHHHHHHHHHhhhh
Q 025331 130 EDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKIGEM 181 (254)
Q Consensus 130 ~D~~Nsi~AG~~TGail~~~~G~~~~~~~~~ai~gga~fA~~sga~~~~g~~ 181 (254)
++.....+.|.+.|++++...|..+ ..++++++.-+++.++.-.....
T Consensus 50 ~~~~~ga~~GA~~GA~~Ga~~G~~~----~ga~~GAa~Ga~~G~~~g~~~~~ 97 (118)
T PF13436_consen 50 ENTAGGAAIGAAAGAAIGAIIGGNG----RGAAIGAAAGAAVGAAAGAARGR 97 (118)
T ss_pred hhHHHHHHHHHHHHHHHHhhcCCCc----cchHHHHHHHHHHHHHhhhhhhh
Confidence 4555566777777888887766422 44555555555544444333333
No 35
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=50.28 E-value=59 Score=24.66 Aligned_cols=55 Identities=15% Similarity=0.109 Sum_probs=32.7
Q ss_pred CCChhhHHHHHHHHHHhHHHHHHHHH-hCCchhhHHHHHHHHHHHHHHHHHHHHhhh
Q 025331 13 QLPQKAIKDVQFKLKELENGYKSWLA-KQPLPVEAAIVTATTAINGAAIGAFLGVMT 68 (254)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~w~~-~q~~~~E~cv~T~~gav~Gg~lG~~~G~~~ 68 (254)
-.+++.+++++.|+.++|+..+---. .+++.-+ -+.--+|.+-|.++|+++=.+.
T Consensus 8 ~v~~~d~~~i~~rLd~iEeKVEf~~~E~~Qr~Gk-k~GRDiGIlYG~viGlli~~~~ 63 (70)
T TIGR01149 8 FVEPDEFNEVMKRLDEIEEKVEFVNGEVAQRIGK-KVGRDIGILYGLVIGLILFLIY 63 (70)
T ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHHHHHH
Confidence 34668899999999999988763221 1111111 1133456777777777664433
No 36
>PF13543 KSR1-SAM: SAM like domain present in kinase suppressor RAS 1
Probab=49.84 E-value=7.3 Score=32.68 Aligned_cols=48 Identities=23% Similarity=0.291 Sum_probs=41.1
Q ss_pred CCchhhHHHHHHHHHhhcCchhhHHH-HhhccCCCccccCCChhhhhhC
Q 025331 188 PTADDVYYARTRGMLDKLGLQNYTKN-FKRGLLTDSTLPLLTDSALRDV 235 (254)
Q Consensus 188 ~~~~d~~Ya~~~~~l~~Lgl~~y~~~-f~~e~~~~~~l~~~~~~~Lk~~ 235 (254)
++.+-+.|.+++.+|.-.||.+-... --....+.++|.-|+|++|+++
T Consensus 59 ~~~~l~~yP~l~~WL~vVgl~~~~i~~i~~~~~tLe~Llemsd~el~~~ 107 (129)
T PF13543_consen 59 RAAELNSYPSLRQWLRVVGLRPESIQAILSKVLTLEALLEMSDEELKEI 107 (129)
T ss_pred CchhcccCCcHHHHhhhcCCCHHHHHHHHHhhcCHHHHHhCCHHHHHHH
Confidence 45677789999999999999876655 5467999999999999999875
No 37
>PF10439 Bacteriocin_IIc: Bacteriocin class II with double-glycine leader peptide; InterPro: IPR019493 Bacteriocins are proteinaceous toxins produced by bacteria to inhibit the growth of similar or closely related strains. The producer bacteria are protected from the effects of their own bacteriocins by production of a specific immunity protein which is co-transcribed with the genes encoding the bacteriocins, e.g. IPR015046 from INTERPRO. The bacteriocins are structurally more specific than their immunity-protein counterparts. Typically, production of the bacteriocin gene is from within an operon carrying up to 6 genes including a typical two-component regulatory system (R and H), a small peptide pheromone (C), and a dedicated ABC transporter (A and -B) as well as an immunity protein []. The ABC transporter is thought to recognise the N termini of both the pheromone and the bacteriocins and to transport these peptides across the cytoplasmic membrane, concurrent with cleavage at the conserved double-glycine motif. Cleaved extracellular C can then bind to the sensor kinase, H, resulting in activation of R and up-regulation of the entire gene cluster via binding to consensus sequences within each promoter []. It seems likely that the whole regulon is carried on a transmissible plasmid which is passed between closely related Firmicute species since many clinical isolates from different Firmicutes can produce at least two bacteriocins, and the same bacteriocins can be produced by different species. The proteins in this entry include amylovorin-L, lactacin-F and salivaricin CRL 1328, all of them class IIb two-peptide bacteriocins.
Probab=49.52 E-value=41 Score=24.47 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=18.1
Q ss_pred cchhhHHHHHHHHhHHhhhccCC
Q 025331 130 EDLQSSVVAAFGSGAAFSLVSGM 152 (254)
Q Consensus 130 ~D~~Nsi~AG~~TGail~~~~G~ 152 (254)
.+.+..+++++++|++.+...|+
T Consensus 23 ~~~~~~~~~~~~~G~~~G~~~g~ 45 (65)
T PF10439_consen 23 GNCVGGVGGGAAGGAAAGAAGGP 45 (65)
T ss_pred HHHHHHHHHHHHHHHHHhhhccc
Confidence 45566778888889988888886
No 38
>PRK10404 hypothetical protein; Provisional
Probab=49.01 E-value=25 Score=28.13 Aligned_cols=12 Identities=50% Similarity=0.916 Sum_probs=6.4
Q ss_pred HHHHHHHHHHhh
Q 025331 56 NGAAIGAFLGVM 67 (254)
Q Consensus 56 ~Gg~lG~~~G~~ 67 (254)
.+.++|+++|++
T Consensus 86 iaagvGlllG~L 97 (101)
T PRK10404 86 VGAAVGLVLGLL 97 (101)
T ss_pred HHHHHHHHHHHH
Confidence 344456666555
No 39
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=47.60 E-value=66 Score=24.86 Aligned_cols=56 Identities=20% Similarity=0.176 Sum_probs=32.9
Q ss_pred cCCChhhHHHHHHHHHHhHHHHHHHHH-hCCchhhHHHHHHHHHHHHHHHHHHHHhhh
Q 025331 12 VQLPQKAIKDVQFKLKELENGYKSWLA-KQPLPVEAAIVTATTAINGAAIGAFLGVMT 68 (254)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~w~~-~q~~~~E~cv~T~~gav~Gg~lG~~~G~~~ 68 (254)
.-.+++.+++++.|+.++|+..+---. .+++.-+ =+.--+|.+-|.++|.++=++-
T Consensus 10 viv~~~d~~~i~~rLD~iEeKVEftn~Ei~Qr~Gk-kvGRDiGIlYG~viGlli~~i~ 66 (77)
T PRK01026 10 VVVDPKDFKEIQKRLDEIEEKVEFTNAEIFQRIGK-KVGRDIGILYGLVIGLLIVLVY 66 (77)
T ss_pred eecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHHHHHH
Confidence 345668899999999999988764221 1110100 0123356677777777665444
No 40
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=45.92 E-value=11 Score=25.99 Aligned_cols=16 Identities=44% Similarity=0.974 Sum_probs=11.9
Q ss_pred CCChhh----hhhCCCCCCh
Q 025331 226 LLTDSA----LRDVRIPPGP 241 (254)
Q Consensus 226 ~~~~~~----Lk~~giP~gp 241 (254)
-+||.+ |++.|+|+||
T Consensus 5 ~LSd~eL~~~L~~~G~~~gP 24 (44)
T smart00540 5 RLSDAELRAELKQYGLPPGP 24 (44)
T ss_pred HcCHHHHHHHHHHcCCCCCC
Confidence 355554 5678999999
No 41
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=45.10 E-value=21 Score=37.52 Aligned_cols=44 Identities=23% Similarity=0.359 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhcCchhhHHHHhhccCCCccccCCChhhhhhCCC
Q 025331 194 YYARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRI 237 (254)
Q Consensus 194 ~Ya~~~~~l~~Lgl~~y~~~f~~e~~~~~~l~~~~~~~Lk~~gi 237 (254)
++.-+-.+|...||++|-+.|....||---|.+||.+||-+|.+
T Consensus 624 Dv~wvlRWLDDIGLPQYKdqF~E~rVDgrmL~ylTvnDll~lkV 667 (861)
T KOG1899|consen 624 DVHWVLRWLDDIGLPQYKDQFAENRVDGRMLHYLTVNDLLELKV 667 (861)
T ss_pred hHHHHHHHHHhcCChhhHHHHhhhccchhhHhhhhHhhhhHHHH
Confidence 55667789999999999999999999999999999999988765
No 42
>PRK10132 hypothetical protein; Provisional
Probab=40.36 E-value=62 Score=26.21 Aligned_cols=13 Identities=38% Similarity=0.756 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHhh
Q 025331 55 INGAAIGAFLGVM 67 (254)
Q Consensus 55 v~Gg~lG~~~G~~ 67 (254)
..+.++|+++|++
T Consensus 91 giaagvG~llG~L 103 (108)
T PRK10132 91 GTAAAVGIFIGAL 103 (108)
T ss_pred HHHHHHHHHHHHH
Confidence 3344455555554
No 43
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=37.77 E-value=64 Score=26.44 Aligned_cols=57 Identities=12% Similarity=-0.014 Sum_probs=32.6
Q ss_pred HhhcccchhhHHHHHHHHhHHhhhccCCCCCChhHHHHHHHHHHHHHHHHHHHhhhh
Q 025331 125 RLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKIGEM 181 (254)
Q Consensus 125 ~~Rgk~D~~Nsi~AG~~TGail~~~~G~~~~~~~~~ai~gga~fA~~sga~~~~g~~ 181 (254)
++..-=-.-|+++-|+.+|+++|...-....++.+++=.+-..|.+.+.+....-+.
T Consensus 33 ~~~~iPCfR~slL~Gi~~G~~vG~~~fl~~~~~~~A~nwavgsF~l~s~~~we~Cr~ 89 (118)
T PF12597_consen 33 NVHKIPCFRDSLLYGIAGGFGVGGLRFLFTSNPRKAANWAVGSFFLGSLGSWEYCRY 89 (118)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHhhhhcccCCCccchhhhhHHHHHHHHHHHHHHHH
Confidence 344444456677777777777765554433344555555666666666665554443
No 44
>PF05818 TraT: Enterobacterial TraT complement resistance protein; InterPro: IPR008874 The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between Escherichia coli and its surroundings []. The protein plays a role in preventing unproductive conjugation between bacteria carrying like plasmids.; GO: 0046999 regulation of conjugation, 0019867 outer membrane
Probab=37.70 E-value=45 Score=30.29 Aligned_cols=12 Identities=33% Similarity=0.482 Sum_probs=5.9
Q ss_pred HHHHHHHhHHhh
Q 025331 136 VVAAFGSGAAFS 147 (254)
Q Consensus 136 i~AG~~TGail~ 147 (254)
+++|.++|+.++
T Consensus 90 a~~Ga~~G~~~g 101 (215)
T PF05818_consen 90 ALAGAATGAAIG 101 (215)
T ss_pred HHHHhHHhhhhc
Confidence 444455554444
No 45
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=37.21 E-value=25 Score=26.02 Aligned_cols=36 Identities=33% Similarity=0.399 Sum_probs=28.4
Q ss_pred hhhHHHHHHHHHhhcCchhhHHHHhhccCCCccccCCChhhhhhCCCCCChhHHHHH
Q 025331 191 DDVYYARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIPPGPRLLILD 247 (254)
Q Consensus 191 ~d~~Ya~~~~~l~~Lgl~~y~~~f~~e~~~~~~l~~~~~~~Lk~~giP~gpr~~il~ 247 (254)
.++...++...|+++|++ ++|+++||..|=--+|-+
T Consensus 29 ~~e~~~~f~~~L~~~Gv~---------------------~~L~~~G~~~GD~V~Ig~ 64 (69)
T TIGR03595 29 NDENLRRFARKLKKLGVE---------------------DALRKAGAKDGDTVRIGD 64 (69)
T ss_pred CHHHHHHHHHHHHHCCHH---------------------HHHHHcCCCCCCEEEEcc
Confidence 444577888889999987 899999999997666654
No 46
>PF03020 LEM: LEM domain; InterPro: IPR003887 The LEM domain is found in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin []. Defects in the emerin gene are a cause of Emery-Dreifuss muscular dystrophy, an X-linked disorder characterised by early contractures, muscle wasting, weakness and cardiomyopathy.; GO: 0005635 nuclear envelope; PDB: 2ODG_C 2ODC_I 1JEI_A 1H9F_A 1GJJ_A.
Probab=36.61 E-value=12 Score=25.68 Aligned_cols=12 Identities=50% Similarity=1.005 Sum_probs=6.2
Q ss_pred hhhhhCCCCCCh
Q 025331 230 SALRDVRIPPGP 241 (254)
Q Consensus 230 ~~Lk~~giP~gp 241 (254)
+.|++.|+++||
T Consensus 13 ~~L~~~G~~~GP 24 (43)
T PF03020_consen 13 EELREYGEPPGP 24 (43)
T ss_dssp HCCCCCT-S---
T ss_pred HHHHHcCCCCCC
Confidence 356789999999
No 47
>COG5457 Uncharacterized conserved small protein [Function unknown]
Probab=35.85 E-value=10 Score=28.17 Aligned_cols=17 Identities=35% Similarity=0.452 Sum_probs=14.1
Q ss_pred ccccCCChhhhhhCCCC
Q 025331 222 STLPLLTDSALRDVRIP 238 (254)
Q Consensus 222 ~~l~~~~~~~Lk~~giP 238 (254)
.+|.-|||++|+|+||-
T Consensus 33 ~eL~~lsd~~L~DiGis 49 (63)
T COG5457 33 RELLRLSDHLLSDIGIS 49 (63)
T ss_pred HHHHHHhHHHHHHcCCC
Confidence 45667889999999996
No 48
>PRK13731 conjugal transfer surface exclusion protein TraT; Provisional
Probab=35.78 E-value=25 Score=32.58 Aligned_cols=19 Identities=16% Similarity=0.109 Sum_probs=9.7
Q ss_pred cchhhHHHHHHHHhHHhhh
Q 025331 130 EDLQSSVVAAFGSGAAFSL 148 (254)
Q Consensus 130 ~D~~Nsi~AG~~TGail~~ 148 (254)
+-+.+.-++|+++|++++.
T Consensus 110 ~~~L~~Gy~ga~~Gaa~G~ 128 (243)
T PRK13731 110 QGWLNRGYEGAAVGAALGA 128 (243)
T ss_pred HHHHhhchhhHHHHHHhhh
Confidence 3344444556666665554
No 49
>KOG3930 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.13 E-value=21 Score=34.54 Aligned_cols=44 Identities=25% Similarity=0.461 Sum_probs=39.8
Q ss_pred hhhHHHHhhccCCCccccCCChhhhhhCCCCC-ChhHHHHHHHhh
Q 025331 208 QNYTKNFKRGLLTDSTLPLLTDSALRDVRIPP-GPRLLILDHIQS 251 (254)
Q Consensus 208 ~~y~~~f~~e~~~~~~l~~~~~~~Lk~~giP~-gpr~~il~~~~~ 251 (254)
-+|...|-...|.++-|+-|+.|-|.||||-. |-=+-||.|++.
T Consensus 19 ~~YA~~Fv~NRIqk~MLldLnKe~l~ElGvT~iGDiiaILrh~K~ 63 (389)
T KOG3930|consen 19 KKYAKSFVTNRIQKEMLLDLNKETLSELGVTAIGDIIAILRHIKA 63 (389)
T ss_pred hhHHHHHHhhhhhHHHHhhhhHHHHHHhchhhhhhHHHHHHHHHH
Confidence 37888999999999999999999999999974 999999999873
No 50
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=33.89 E-value=19 Score=27.91 Aligned_cols=42 Identities=21% Similarity=0.245 Sum_probs=28.8
Q ss_pred hHHHHHHHHH-hhcCc-hhhHHHHhhccCCCccccCCChhhhhhC
Q 025331 193 VYYARTRGML-DKLGL-QNYTKNFKRGLLTDSTLPLLTDSALRDV 235 (254)
Q Consensus 193 ~~Ya~~~~~l-~~Lgl-~~y~~~f~~e~~~~~~l~~~~~~~Lk~~ 235 (254)
-.|..+.+++ ++|.| .+......|.+-+-+-.++ +|+||+++
T Consensus 21 ~~y~~L~~ki~~kLkl~~e~i~LsYkde~s~~~v~l-~d~dle~a 64 (80)
T cd06406 21 LSYATLLQKISSKLELPAEHITLSYKSEASGEDVIL-SDTNMEDV 64 (80)
T ss_pred CCHHHHHHHHHHHhCCCchhcEEEeccCCCCCccCc-ChHHHHHH
Confidence 3566666665 78888 5666666666665555566 99999864
No 51
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=32.23 E-value=1.5e+02 Score=22.56 Aligned_cols=51 Identities=18% Similarity=0.240 Sum_probs=29.0
Q ss_pred CChhhHHHHHHHHHHhHHHHHHHHHhCCchhhHH--HHHHHHHHHHHHHHHHHHh
Q 025331 14 LPQKAIKDVQFKLKELENGYKSWLAKQPLPVEAA--IVTATTAINGAAIGAFLGV 66 (254)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~w~~~q~~~~E~c--v~T~~gav~Gg~lG~~~G~ 66 (254)
.+++.+.+++.|+.++|+..+---.. ...... +.--+|.+-|.++|.++=.
T Consensus 9 v~~~~~~~i~~rLd~iEeKvEf~~~E--i~Qr~GkkiGRDiGIlYG~v~Glii~~ 61 (70)
T PF04210_consen 9 VDPDDFNEIMKRLDEIEEKVEFTNAE--IAQRAGKKIGRDIGILYGLVIGLIIFI 61 (70)
T ss_pred eCHHHHHHHHHHHHHHHHHHHhHHHH--HHHHHhHHhhhHHHHHHHHHHHHHHHH
Confidence 45678999999999988877632111 000011 1233566666666665433
No 52
>PRK10132 hypothetical protein; Provisional
Probab=31.95 E-value=1.8e+02 Score=23.53 Aligned_cols=17 Identities=41% Similarity=0.489 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025331 49 VTATTAINGAAIGAFLG 65 (254)
Q Consensus 49 ~T~~gav~Gg~lG~~~G 65 (254)
.-+++++.|+++|++++
T Consensus 89 svgiaagvG~llG~Ll~ 105 (108)
T PRK10132 89 SVGTAAAVGIFIGALLS 105 (108)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 55788888999998875
No 53
>PF13735 tRNA_NucTran2_2: tRNA nucleotidyltransferase domain 2 putative; PDB: 1MIY_A 1MIV_B 1MIW_B.
Probab=31.31 E-value=45 Score=27.00 Aligned_cols=25 Identities=28% Similarity=0.606 Sum_probs=17.3
Q ss_pred CChhhhhh-CCCCCChhH-HHHHHHhh
Q 025331 227 LTDSALRD-VRIPPGPRL-LILDHIQS 251 (254)
Q Consensus 227 ~~~~~Lk~-~giP~gpr~-~il~~~~~ 251 (254)
.|=.||.+ +|+|+||.. +||+++..
T Consensus 105 I~G~DLi~~lg~~pGp~iG~iL~~l~~ 131 (149)
T PF13735_consen 105 INGNDLIEALGIKPGPWIGEILERLLE 131 (149)
T ss_dssp S-HHHHHHHHT--SSCHHHHHHHHHHH
T ss_pred cCHHHHHHHcCCCCCcHHHHHHHHHHH
Confidence 78889999 799999996 56776653
No 54
>TIGR01992 PTS-IIBC-Tre PTS system, trehalose-specific IIBC component. Trehalose may also be transported (in Salmonella) via the mannose PTS or galactose permease systems, or (in Sinorhizobium, Thermococcus and Sulfolobus, for instance) by ABC transporters.
Probab=31.27 E-value=1.4e+02 Score=29.72 Aligned_cols=66 Identities=18% Similarity=0.091 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHh-------HHhhhccCCCCCChhHHHHHHHHHHHHHHHHHH
Q 025331 104 VQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSG-------AAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSF 176 (254)
Q Consensus 104 ~~a~nFAviggvysg~ec~ie~~Rgk~D~~Nsi~AG~~TG-------ail~~~~G~~~~~~~~~ai~gga~fA~~sga~~ 176 (254)
....|||..|++++..= +-|. ++..+...+++++| ++++..-.. ..|+-+++.+|+..+++.+.+.
T Consensus 345 ~~~~~~aq~ga~lav~l----k~k~-~~~k~~a~sa~is~~~GITEPaiyGv~l~~--kkp~i~~~ig~~igG~~~g~~g 417 (462)
T TIGR01992 345 IALSNIAQGSAALGIIF----MSRN-EKEKGLSLTSAISAYLGVTEPAMFGVNLKY--KFPFIAAMIGSGLAGLLSGLNG 417 (462)
T ss_pred HHHHHHHHHHHHHHHHH----HHCC-HHHHHHHHHHHHHHHhccchHhHHHhccch--hhHHHHHHHHHHHHHHHHHHhc
Confidence 45678888888887632 2222 23444444444443 445544332 3357777777777777776553
No 55
>PRK02898 cobalt transport protein CbiN; Provisional
Probab=31.08 E-value=18 Score=29.12 Aligned_cols=49 Identities=18% Similarity=0.379 Sum_probs=37.3
Q ss_pred HHHHHHhHHHHHHHHHhC----CchhhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 025331 23 QFKLKELENGYKSWLAKQ----PLPVEAAIVTATTAINGAAIGAFLGVMTQDL 71 (254)
Q Consensus 23 ~~~~~~~~~~~~~w~~~q----~~~~E~cv~T~~gav~Gg~lG~~~G~~~~~~ 71 (254)
..-.+++.+.++-|+... +--+|+.+-+.-+++..+++|+++|......
T Consensus 41 ~~~I~ei~p~Y~PWf~PlwEPPsGEiESLLFaLQAAiGAgiIgY~lG~~~gr~ 93 (100)
T PRK02898 41 EEAITEIAPDYEPWFEPLWEPPSGEIESLLFALQAALGAGIIGYILGYYKGRS 93 (100)
T ss_pred HHHHHHhCCCCcccccccccCCcchHHHHHHHHHHHHhhhhhheeeeehhhhh
Confidence 334455666788898754 3457888899999999999999999887543
No 56
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=29.73 E-value=27 Score=29.20 Aligned_cols=44 Identities=11% Similarity=0.099 Sum_probs=26.1
Q ss_pred HHHHHHHHHhhcCchhhHHHHhhccCCCccccCCCh---hhhhhCCCCC
Q 025331 194 YYARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTD---SALRDVRIPP 239 (254)
Q Consensus 194 ~Ya~~~~~l~~Lgl~~y~~~f~~e~~~~~~l~~~~~---~~Lk~~giP~ 239 (254)
.-..+-..|+++||.+|.++ +|+||-++|.-..+ ..+.-.||-.
T Consensus 92 ~~~~vl~~Lk~~gl~~~Ir~--keev~k~alk~~~~~~~~~~~v~Gv~i 138 (149)
T PF07352_consen 92 DEEKVLEWLKENGLKEFIRT--KEEVDKEALKKEPDVDEDGEIVPGVTI 138 (149)
T ss_dssp -HHHHHHHHHHCT-GCC----------HHHHTTS-H---HHHHHTT---
T ss_pred CHHHHHHHHHHcCchhhEEe--eeecCHHHHhcCcccccccceeCCeEE
Confidence 45567778899999999887 89999999999999 8888888754
No 57
>PLN02720 complex II
Probab=29.52 E-value=63 Score=27.43 Aligned_cols=46 Identities=26% Similarity=0.527 Sum_probs=0.0
Q ss_pred hhHHHHhhccCCCccccCCChhhhhh-CCCCC--ChhHHHHHHHhhccC
Q 025331 209 NYTKNFKRGLLTDSTLPLLTDSALRD-VRIPP--GPRLLILDHIQSFCL 254 (254)
Q Consensus 209 ~y~~~f~~e~~~~~~l~~~~~~~Lk~-~giP~--gpr~~il~~~~~~~~ 254 (254)
.|+.||.+=.--+.-||-+||+|..| |--.| ||++|-.+.....++
T Consensus 22 s~l~~y~~~~~rdkPLP~Ws~sDVeeFIaSDPVyGPqLk~~rea~~fa~ 70 (140)
T PLN02720 22 SFLENYARFSKRDKPLPPWSDSDVDEFIASDPVYGPQLKTMREAATFAV 70 (140)
T ss_pred HHHHHHHHhhcCCCCCCCCchhhHHHHHhcCCCcchHHHHHHHHHHHHh
No 58
>PRK10404 hypothetical protein; Provisional
Probab=29.51 E-value=2e+02 Score=22.86 Aligned_cols=17 Identities=24% Similarity=0.298 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025331 49 VTATTAINGAAIGAFLG 65 (254)
Q Consensus 49 ~T~~gav~Gg~lG~~~G 65 (254)
.-+++++.|+++|++++
T Consensus 83 avGiaagvGlllG~Ll~ 99 (101)
T PRK10404 83 GIGVGAAVGLVLGLLLA 99 (101)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45678889999998875
No 59
>PF04418 DUF543: Domain of unknown function (DUF543); InterPro: IPR007512 This family of short eukaryotic proteins has no known function. Most of the members of this family are only 80 amino acid residues long. However the Arabidopsis homologue is over 300 residues long. These proteins contain a conserved N-terminal cysteine and a conserved motif GXGXGXG in the carboxy terminal half that may be functionally important.
Probab=28.64 E-value=1.3e+02 Score=22.91 Aligned_cols=20 Identities=20% Similarity=0.202 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 025331 49 VTATTAINGAAIGAFLGVMT 68 (254)
Q Consensus 49 ~T~~gav~Gg~lG~~~G~~~ 68 (254)
.+.+=.+.|.++|.+++++.
T Consensus 28 ~~l~k~~~G~~~G~~~s~l~ 47 (75)
T PF04418_consen 28 DTLVKTGLGFGIGVVFSLLF 47 (75)
T ss_pred HHHHHHhhhhhHHHHHHHHH
Confidence 34444444455555555544
No 60
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=27.93 E-value=22 Score=26.21 Aligned_cols=34 Identities=29% Similarity=0.357 Sum_probs=24.5
Q ss_pred hHHHHHHHHHhhcCchhhHHHHhhccCCCccccCCChhhhhhCCCCCChhHHHHH
Q 025331 193 VYYARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIPPGPRLLILD 247 (254)
Q Consensus 193 ~~Ya~~~~~l~~Lgl~~y~~~f~~e~~~~~~l~~~~~~~Lk~~giP~gpr~~il~ 247 (254)
+-..++...|+++|++ ++|++.||..|-..+|-+
T Consensus 31 e~~~rf~~~L~~~Gv~---------------------~~L~~~G~~~GD~V~Ig~ 64 (69)
T PF09269_consen 31 ESLRRFQRKLKKMGVE---------------------KALRKAGAKEGDTVRIGD 64 (69)
T ss_dssp GGHHHHHHHHHHTTHH---------------------HHHHTTT--TT-EEEETT
T ss_pred HHHHHHHHHHHHCCHH---------------------HHHHHcCCCCCCEEEEcC
Confidence 4577889999999998 789999999886665543
No 61
>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional
Probab=26.80 E-value=4.3e+02 Score=23.03 Aligned_cols=26 Identities=15% Similarity=0.075 Sum_probs=11.6
Q ss_pred hhhHHH-HHHHHHHHHHHHHHHHHhhh
Q 025331 43 PVEAAI-VTATTAINGAAIGAFLGVMT 68 (254)
Q Consensus 43 ~~E~cv-~T~~gav~Gg~lG~~~G~~~ 68 (254)
+.++|- .-.+|++.|++.+++-|+-+
T Consensus 15 i~dd~G~af~~G~vgG~~~~~~~G~rn 41 (164)
T PTZ00236 15 IIEDMGGAFSMGCIGGFIWHFLKGMRN 41 (164)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHh
Confidence 445555 34444444444444444433
No 62
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=26.25 E-value=56 Score=24.33 Aligned_cols=18 Identities=33% Similarity=0.399 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 025331 51 ATTAINGAAIGAFLGVMT 68 (254)
Q Consensus 51 ~~gav~Gg~lG~~~G~~~ 68 (254)
+++.+.|.++|+|++-..
T Consensus 4 ilali~G~~~Gff~ar~~ 21 (64)
T PF03672_consen 4 ILALIVGAVIGFFIARKY 21 (64)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345566666666665444
No 63
>PHA01516 hypothetical protein
Probab=26.01 E-value=32 Score=26.96 Aligned_cols=43 Identities=23% Similarity=0.371 Sum_probs=32.9
Q ss_pred HHHHHHHhhcCchhhHHHHhhccCCCccccC----CChhhhhhCCCC
Q 025331 196 ARTRGMLDKLGLQNYTKNFKRGLLTDSTLPL----LTDSALRDVRIP 238 (254)
Q Consensus 196 a~~~~~l~~Lgl~~y~~~f~~e~~~~~~l~~----~~~~~Lk~~giP 238 (254)
-|+-..|..-.+.+|.+|.+-.--+-+-|-+ +||+||.|||+.
T Consensus 27 v~~m~~la~yd~fqydnnik~dycn~~glqm~de~ltd~dleem~lt 73 (98)
T PHA01516 27 VRVMDALADYDAFQYDNNIKPDYCNANGLQMWDESLTDQDLEEMELT 73 (98)
T ss_pred chHHHHHhcchhhhhccCCCccccCccchhhhhhhcchhHHHHccch
Confidence 3556677788888888888877776666654 578999999975
No 64
>PF13099 DUF3944: Domain of unknown function (DUF3944)
Probab=25.93 E-value=15 Score=24.34 Aligned_cols=17 Identities=18% Similarity=0.173 Sum_probs=13.5
Q ss_pred CCCccccCCChhhhhhC
Q 025331 219 LTDSTLPLLTDSALRDV 235 (254)
Q Consensus 219 ~~~~~l~~~~~~~Lk~~ 235 (254)
-|.+-|..|+++||+++
T Consensus 5 ~DLeFL~~cs~edL~~L 21 (35)
T PF13099_consen 5 SDLEFLAECSNEDLKDL 21 (35)
T ss_pred cchHHHHHCCHHHHHHH
Confidence 35667889999999875
No 65
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=25.91 E-value=99 Score=29.09 Aligned_cols=48 Identities=27% Similarity=0.407 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHhhcCchhhHHHHhhccCCCccccCCChhhhhhCCCCCChh
Q 025331 192 DVYYARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIPPGPR 242 (254)
Q Consensus 192 d~~Ya~~~~~l~~Lgl~~y~~~f~~e~~~~~~l~~~~~~~Lk~~giP~gpr 242 (254)
++-+.+++.++++||+.. +++.-.++.+.|.-+-|..+++-.+..=||
T Consensus 312 ~~~~~~l~~l~~~lglp~---~l~~~gi~~~~l~~ia~~a~~~~~~~~~P~ 359 (366)
T PF00465_consen 312 DDAIDELRALLRSLGLPT---RLSDLGIDEEDLDEIAEAALADQRMKNNPR 359 (366)
T ss_dssp HHHHHHHHHHHHHTT--S---SGGGGT-TGGGHHHHHHHHTCTGGGGGSSS
T ss_pred HHHHHHHHHHHHHhCCCC---CHHHcCCCHHHHHHHHHHHHhCccccCCCC
Confidence 456999999999999987 344445555666666666555544444444
No 66
>PF14019 DUF4235: Protein of unknown function (DUF4235)
Probab=25.54 E-value=3e+02 Score=20.75 Aligned_cols=48 Identities=23% Similarity=0.366 Sum_probs=26.8
Q ss_pred HHHHHHHHhHHhhh----ccCCCCC-C--hhHHHHHHHHHHHHHHHHHHHhhhhh
Q 025331 135 SVVAAFGSGAAFSL----VSGMGGA-N--PAVNAFTSGLLFAIFQGCSFKIGEMW 182 (254)
Q Consensus 135 si~AG~~TGail~~----~~G~~~~-~--~~~~ai~gga~fA~~sga~~~~g~~f 182 (254)
++.+|+++|-++.. ..|...| + -....+.-.++||++||++..+-+..
T Consensus 9 ~~~ag~~a~k~~~~~W~~~tg~~~P~~~~d~~~~~~e~l~~Aaisgav~avv~~~ 63 (78)
T PF14019_consen 9 GLAAGFLAGKVFEQVWKKVTGREPPKDPDDPDRSLREALAFAAISGAVFAVVRAA 63 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777766542 2333223 2 23455566666777777776666554
No 67
>PRK09796 PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Probab=25.41 E-value=1.7e+02 Score=29.46 Aligned_cols=69 Identities=16% Similarity=0.181 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHhHHhhhcc----CC--CCCChhHHHHHHHHHHHHHHHHHH
Q 025331 103 LVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVS----GM--GGANPAVNAFTSGLLFAIFQGCSF 176 (254)
Q Consensus 103 ~~~a~nFAviggvysg~ec~ie~~Rgk~D~~Nsi~AG~~TGail~~~~----G~--~~~~~~~~ai~gga~fA~~sga~~ 176 (254)
...+.|+|..|++++..= +-|. .+..+-..++++++.+.|.+. |- +-.+|+-+++.+|+..+++.+.+.
T Consensus 333 ~~~~a~~aq~ga~lav~l----k~Kn-~~~k~~a~sa~isa~~~GITEPaiYGv~L~~kkpfi~~~igg~vGG~~~g~~g 407 (472)
T PRK09796 333 SEIGANLSLGGSSLAVAW----KTKN-PELRQTALAAAASAIMAGISEPALYGVAIRLKRPLIASLISGFICGAVAGMAG 407 (472)
T ss_pred HHHHHHHHHHHHHHHHHH----HHcC-HHHHHHHHHHHHHHHHcCCCchhheeeecchhhHHHHHHHHHHHHHHHHHHHh
Confidence 356678888888777643 2222 234455555555543323221 11 113467788888887777776654
No 68
>COG4803 Predicted membrane protein [Function unknown]
Probab=25.05 E-value=67 Score=28.06 Aligned_cols=55 Identities=20% Similarity=0.328 Sum_probs=37.6
Q ss_pred CChhhHHHHHHHHHHhHHHHHH---------HHHhCCchhhHHH-HHHHHHHHHHHHHHHHHhhh
Q 025331 14 LPQKAIKDVQFKLKELENGYKS---------WLAKQPLPVEAAI-VTATTAINGAAIGAFLGVMT 68 (254)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~---------w~~~q~~~~E~cv-~T~~gav~Gg~lG~~~G~~~ 68 (254)
|...--++++.++.+|+.+.-- |-..--....-.+ .|+.|++.|+.-|.++|+++
T Consensus 12 ~~e~~Aeev~~~l~~LqkE~LI~L~DAvvvvk~~~gkvklkQ~~Nlt~aGa~sGafWG~LiGllF 76 (170)
T COG4803 12 DDEDKAEEVRERLNELQKEYLITLEDAVVVVKDEDGKVKLKQLMNLTGAGAVSGAFWGMLIGLLF 76 (170)
T ss_pred CCcchHHHHHHHHHHhhHHHheeccceEEEEeCCCCCeeHHHHhhhhhhccccccHHHHHHHHHH
Confidence 4445567888888888776531 1112223445566 88999999999999999887
No 69
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=24.70 E-value=78 Score=23.22 Aligned_cols=21 Identities=29% Similarity=0.298 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHhhhhcc
Q 025331 51 ATTAINGAAIGAFLGVMTQDL 71 (254)
Q Consensus 51 ~~gav~Gg~lG~~~G~~~~~~ 71 (254)
..|.+.|+++|...|++.+..
T Consensus 2 ~~g~l~Ga~~Ga~~glL~aP~ 22 (74)
T PF12732_consen 2 LLGFLAGAAAGAAAGLLFAPK 22 (74)
T ss_pred HHHHHHHHHHHHHHHHHhCCC
Confidence 357788888888888888553
No 70
>PRK00523 hypothetical protein; Provisional
Probab=23.68 E-value=1e+02 Score=23.52 Aligned_cols=46 Identities=17% Similarity=0.361 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCchhhhhhhhhhhhhhCCc
Q 025331 50 TATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGP 102 (254)
Q Consensus 50 T~~gav~Gg~lG~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ 102 (254)
.+.+.+.|+++|+|++-.. +.+.+..+|| .++++++.+=. .||..|
T Consensus 11 ~i~~li~G~~~Gffiark~--~~k~l~~NPp---ine~mir~M~~--QMGqKP 56 (72)
T PRK00523 11 GIPLLIVGGIIGYFVSKKM--FKKQIRENPP---ITENMIRAMYM--QMGRKP 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHCcC---CCHHHHHHHHH--HhCCCc
Confidence 3444455544444444332 1222222322 36655554422 277766
No 71
>PRK01844 hypothetical protein; Provisional
Probab=22.36 E-value=88 Score=23.88 Aligned_cols=17 Identities=12% Similarity=0.243 Sum_probs=8.9
Q ss_pred CchhhhhhhhhhhhhhCCc
Q 025331 84 LNPDAVAPFQQVQAVAGGP 102 (254)
Q Consensus 84 ~~~~~~~~~k~~~~~~~~~ 102 (254)
.++++++.+=. .||..|
T Consensus 39 ine~mir~Mm~--QMGqkP 55 (72)
T PRK01844 39 INEQMLKMMMM--QMGQKP 55 (72)
T ss_pred CCHHHHHHHHH--HhCCCc
Confidence 36655554422 277666
No 72
>PLN02975 complex I subunit
Probab=22.32 E-value=2.4e+02 Score=22.69 Aligned_cols=29 Identities=10% Similarity=0.152 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHH---HhhhhhhccCCC
Q 025331 160 NAFTSGLLFAIFQGCSF---KIGEMWQSTQRP 188 (254)
Q Consensus 160 ~ai~gga~fA~~sga~~---~~g~~f~~~~~~ 188 (254)
.++..+.+.+++.|.+. --..+|-++...
T Consensus 57 ~~mr~ag~iG~~gGf~~aYq~S~~Rf~G~~EN 88 (97)
T PLN02975 57 PSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPN 88 (97)
T ss_pred hHHHHHHHHHHhhhHHhhhcccchhhcCCCCC
Confidence 33344444444444443 335677777544
No 73
>COG1153 FwdD Formylmethanofuran dehydrogenase subunit D [Energy production and conversion]
Probab=22.30 E-value=23 Score=29.70 Aligned_cols=35 Identities=6% Similarity=0.269 Sum_probs=28.1
Q ss_pred HHhhccCCCccccCCChhhhhhCCCCCChhHHHHH
Q 025331 213 NFKRGLLTDSTLPLLTDSALRDVRIPPGPRLLILD 247 (254)
Q Consensus 213 ~f~~e~~~~~~l~~~~~~~Lk~~giP~gpr~~il~ 247 (254)
.|-++-+|-.+.-.++.+|++.+|+|-|-+.|.-+
T Consensus 21 K~~~~Y~~a~a~~~inp~D~~~Lgv~EGD~VkVks 55 (128)
T COG1153 21 KFTDEYFNACAVCEINPEDMKQLGVSEGDKVKVKS 55 (128)
T ss_pred cchhhhhhheeEEEECHHHHHHhCCCcCCeEEEEe
Confidence 35566677888999999999999999997766543
No 74
>PRK09586 murP PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed
Probab=22.10 E-value=1.9e+02 Score=29.17 Aligned_cols=65 Identities=18% Similarity=0.175 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc--chhhHHHHHHHHh-------HHhhhccCCCCCChhHHHHHHHHHHHHHHHH
Q 025331 104 VQARNFAVITGVNAGISCVMKRLRGKE--DLQSSVVAAFGSG-------AAFSLVSGMGGANPAVNAFTSGLLFAIFQGC 174 (254)
Q Consensus 104 ~~a~nFAviggvysg~ec~ie~~Rgk~--D~~Nsi~AG~~TG-------ail~~~~G~~~~~~~~~ai~gga~fA~~sga 174 (254)
....|+|..|++++-. +|-|+ ...+..++++.|+ +++|..-. -.+|+-+++.+|+..+++.+.
T Consensus 341 ~~~~~~aq~Ga~lav~------lk~K~~~~~K~~a~sa~isa~lGITEPaiYGV~L~--~kkpfi~a~iGg~iGG~~~g~ 412 (476)
T PRK09586 341 LAMAGAGQVGAALALY------WRAQKHSALRTQVKGAIIPGLLGVGEPLIYGVTLP--RMKPFVTACLGGAAGGFFIGL 412 (476)
T ss_pred HHHHHHHHHHHHHHHH------HHHcccHHHHHHHHHHHHHHHhcCCccchheeehh--hhHHHHHHHHHHHHHHHHHHH
Confidence 4566788777776653 44432 2344444444443 23332221 123677788888877777776
Q ss_pred HH
Q 025331 175 SF 176 (254)
Q Consensus 175 ~~ 176 (254)
+.
T Consensus 413 ~~ 414 (476)
T PRK09586 413 IA 414 (476)
T ss_pred cC
Confidence 64
No 75
>COG5625 Predicted transcription regulator containing HTH domain [Transcription]
Probab=21.96 E-value=96 Score=25.41 Aligned_cols=33 Identities=24% Similarity=0.447 Sum_probs=21.8
Q ss_pred ccccchhhcccCCChhhHHHHHHHH----HHhHHHHH
Q 025331 2 EKGNEKVMSLVQLPQKAIKDVQFKL----KELENGYK 34 (254)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 34 (254)
+||--|-.-+..||..+++++...+ +++|.+|+
T Consensus 72 qkgWvGYiya~~~P~k~leei~~~i~keiEelEk~~k 108 (113)
T COG5625 72 QKGWVGYIYATTPPPKPLEEIEEEIMKEIEELEKEFK 108 (113)
T ss_pred hccceeeEecCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555677888998877655 55666665
No 76
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=21.92 E-value=2.8e+02 Score=21.23 Aligned_cols=56 Identities=14% Similarity=0.099 Sum_probs=33.0
Q ss_pred CChhhHHHHHHHHHHhHHHHHH-HHHhCCchhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 025331 14 LPQKAIKDVQFKLKELENGYKS-WLAKQPLPVEAAIVTATTAINGAAIGAFLGVMTQD 70 (254)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~-w~~~q~~~~E~cv~T~~gav~Gg~lG~~~G~~~~~ 70 (254)
.++..++++-.|++++|+.++- |-..-+++ -.-+.-=+|.+-|.++|+++-++...
T Consensus 12 v~~~dfne~~kRLdeieekvef~~~Ev~Qr~-GkkiGRDIGILYGlVIGlil~~i~~~ 68 (75)
T COG4064 12 VDPDDFNEIHKRLDEIEEKVEFVNGEVYQRI-GKKIGRDIGILYGLVIGLILCMIYIL 68 (75)
T ss_pred cCHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 3557899999999998887652 11110000 00012235777788888877766644
No 77
>PRK10510 putative outer membrane lipoprotein; Provisional
Probab=21.86 E-value=2.4e+02 Score=25.20 Aligned_cols=40 Identities=15% Similarity=0.033 Sum_probs=20.2
Q ss_pred HHHHHHHHhHHhhhccCCCCCChhHHHHHHHHHHHHHHHHH
Q 025331 135 SVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCS 175 (254)
Q Consensus 135 si~AG~~TGail~~~~G~~~~~~~~~ai~gga~fA~~sga~ 175 (254)
....|.++|++++...|.. .+.-+.++.++++.|++.+++
T Consensus 38 ga~~Ga~~Ga~~G~~~g~~-~~~~~~a~~ga~~G~~~G~~~ 77 (219)
T PRK10510 38 GAGIGSLVGAGIGALSSSK-KDRGKGALIGAAAGAALGGGV 77 (219)
T ss_pred hhHHHHHHHHHHHhhhcCC-CcccchhhhHhHHHhhhhhhh
Confidence 3555667777777665421 011244555555545444443
No 78
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=21.09 E-value=3e+02 Score=22.46 Aligned_cols=23 Identities=13% Similarity=0.058 Sum_probs=12.8
Q ss_pred cccCCChhhHHHHHHHHHHhHHH
Q 025331 10 SLVQLPQKAIKDVQFKLKELENG 32 (254)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~ 32 (254)
++..++..-.++++.+.+.+-.+
T Consensus 30 ssg~~a~~e~~~lR~r~~~~Lk~ 52 (104)
T COG4575 30 SSGSLAGDEAEELRSKAESALKE 52 (104)
T ss_pred hcccchhhHHHHHHHHHHHHHHH
Confidence 44555666666666665543333
No 79
>PRK13299 tRNA CCA-pyrophosphorylase; Provisional
Probab=20.67 E-value=75 Score=30.93 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=21.4
Q ss_pred cCCChhhhhh-CCCCCChhHH-HHHHHhh
Q 025331 225 PLLTDSALRD-VRIPPGPRLL-ILDHIQS 251 (254)
Q Consensus 225 ~~~~~~~Lk~-~giP~gpr~~-il~~~~~ 251 (254)
+.+|=+||.+ +|+|+||..+ ||+++..
T Consensus 344 l~i~G~DLm~~lG~~pGp~ig~iL~~l~~ 372 (394)
T PRK13299 344 LAVNGGDLLKHFGKKPGPWLGETLRKIEE 372 (394)
T ss_pred CCCCHHHHHHhcCCCCChHHHHHHHHHHH
Confidence 5788999999 6999999965 6666643
No 80
>COG3808 OVP1 Inorganic pyrophosphatase [Energy production and conversion]
Probab=20.61 E-value=2.5e+02 Score=29.31 Aligned_cols=74 Identities=19% Similarity=0.231 Sum_probs=44.0
Q ss_pred chhhH-HHHHHHHhHHhhhccCCCCCChhHHHHHHHHHHHHHHHHHHHhhhhhhccCC--CCchhhHHHHHHHHHhhcCc
Q 025331 131 DLQSS-VVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKIGEMWQSTQR--PTADDVYYARTRGMLDKLGL 207 (254)
Q Consensus 131 D~~Ns-i~AG~~TGail~~~~G~~~~~~~~~ai~gga~fA~~sga~~~~g~~f~~~~~--~~~~d~~Ya~~~~~l~~Lgl 207 (254)
|..|+ +++|++-|+++-.--+. ....+++=|+. -..+.+.+.||-.-. +-.+.++|.|..+++.
T Consensus 517 dl~np~VvaGl~~G~~lpylFs~--------~tmtAVgrAA~-~vV~EVRRQfRE~PGimegk~kPdY~R~Vdi~T---- 583 (703)
T COG3808 517 DLSNPYVVAGLLLGGLLPYLFSG--------ITMTAVGRAAM-EVVEEVRRQFREIPGIMEGKAKPDYGRCVDILT---- 583 (703)
T ss_pred ecCChHHHHHHHHhhHHHHHhcc--------hHHHHHHHHHH-HHHHHHHHHHhhCCccccCCcCCchhHHHHHHH----
Confidence 44554 67888888877544221 12233333333 345567777864311 2235568998887764
Q ss_pred hhhHHHHhhccCCCccccCCChhhhhhCCCC
Q 025331 208 QNYTKNFKRGLLTDSTLPLLTDSALRDVRIP 238 (254)
Q Consensus 208 ~~y~~~f~~e~~~~~~l~~~~~~~Lk~~giP 238 (254)
+++||||.||
T Consensus 584 ---------------------~aAl~eMi~P 593 (703)
T COG3808 584 ---------------------KAALKEMIIP 593 (703)
T ss_pred ---------------------HHHHHHhcch
Confidence 4789999888
Done!