Query 025331
Match_columns 254
No_of_seqs 186 out of 607
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 08:11:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025331.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025331hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3k1r_B Usher syndrome type-1G 99.7 7E-18 2.4E-22 125.9 2.4 58 196-253 3-60 (74)
2 2f3n_A SH3 and multiple ankyri 99.4 1.5E-13 5.1E-18 102.1 4.8 56 197-252 9-65 (76)
3 1kw4_A Polyhomeotic; SAM domai 99.4 1.1E-13 3.8E-18 106.5 3.5 60 194-253 18-79 (89)
4 2e8n_A Ephrin type-A receptor 99.4 1.2E-13 4.1E-18 105.5 2.5 62 191-252 8-71 (88)
5 2qkq_A Ephrin type-B receptor 99.4 8.7E-14 3E-18 105.0 1.4 58 195-252 15-74 (83)
6 2kso_A Ephrin type-A receptor 99.4 1.5E-13 5E-18 104.1 2.2 62 191-252 12-75 (82)
7 1b4f_A EPHB2; SAM domain, EPH 99.3 2E-13 6.8E-18 102.7 2.2 58 195-252 11-70 (82)
8 1ucv_A Ephrin type-A receptor 99.3 2.2E-13 7.5E-18 102.6 1.7 58 195-252 7-66 (81)
9 3hil_A Ephrin type-A receptor 99.3 6.9E-13 2.3E-17 100.7 3.8 58 194-251 22-81 (82)
10 2gle_A Neurabin-1; SAM domain, 99.3 4E-13 1.4E-17 98.7 2.2 56 197-252 11-67 (74)
11 3bq7_A Diacylglycerol kinase d 99.3 7.6E-13 2.6E-17 99.4 3.5 59 194-252 11-70 (81)
12 2eao_A Ephrin type-B receptor 99.3 6.7E-13 2.3E-17 103.5 2.2 59 194-252 21-81 (99)
13 1b0x_A Protein (EPHA4 receptor 99.3 5.1E-13 1.7E-17 103.3 1.4 59 194-252 25-85 (94)
14 3h8m_A Ephrin type-A receptor 99.3 7E-13 2.4E-17 102.3 1.9 61 192-252 22-84 (90)
15 2eam_A Putative 47 kDa protein 99.3 1.6E-12 5.4E-17 97.5 3.7 59 195-253 12-74 (80)
16 3kka_C Ephrin type-A receptor 99.3 1.9E-12 6.6E-17 99.0 3.4 62 191-252 17-80 (86)
17 2kg5_A ARF-GAP, RHO-GAP domain 99.2 2.4E-12 8.3E-17 101.0 3.0 59 195-253 26-86 (100)
18 1x40_A ARAP2; ASAP-related pro 99.2 1.3E-11 4.3E-16 95.1 3.5 56 197-252 17-74 (91)
19 2lmr_A ODIN, ankyrin repeat an 99.2 2E-11 6.7E-16 96.2 4.3 56 197-252 31-90 (101)
20 3bs5_B Connector enhancer of k 99.1 1.4E-11 4.9E-16 91.7 2.7 57 196-252 10-69 (80)
21 2e8o_A SAM domain and HD domai 99.1 3E-11 1E-15 94.7 4.4 59 194-252 31-92 (103)
22 2ean_A Connector enhancer of k 99.1 1.8E-11 6.1E-16 91.9 2.8 58 195-252 13-73 (83)
23 2k4p_A Phosphatidylinositol-3, 99.1 2.7E-11 9.3E-16 92.8 2.9 56 197-252 28-85 (86)
24 2d3d_A VTS1 protein; RNA bindi 99.0 1.1E-10 3.8E-15 90.0 3.0 55 195-251 18-73 (88)
25 1pk1_B Sex COMB on midleg CG94 99.0 1.6E-10 5.3E-15 89.0 3.1 59 194-252 18-79 (89)
26 2ke7_A Ankyrin repeat and ster 99.0 6.6E-11 2.2E-15 92.9 0.7 58 195-252 22-83 (103)
27 3sei_A Caskin-1; SAM domain, p 99.0 3.8E-10 1.3E-14 93.9 4.9 63 190-252 5-68 (149)
28 1v38_A SAM-domain protein sams 98.9 1.8E-10 6.2E-15 86.2 2.0 57 196-252 13-71 (78)
29 2dl0_A SAM and SH3 domain-cont 98.9 2.3E-10 7.8E-15 89.3 2.6 60 193-252 21-82 (97)
30 2b6g_A VTS1P; alpha-helix, pen 98.9 1.8E-10 6.1E-15 93.3 2.0 56 194-251 48-104 (119)
31 3bs7_A Protein aveugle; sterIl 98.9 4.1E-10 1.4E-14 83.3 2.3 57 196-252 9-68 (78)
32 2es6_A VTS1P; SAM domain, prot 98.9 6.1E-10 2.1E-14 87.8 2.2 56 194-251 30-86 (101)
33 3sei_A Caskin-1; SAM domain, p 98.8 8.6E-10 2.9E-14 91.7 2.9 56 196-251 80-137 (149)
34 2kiv_A Ankyrin repeat and ster 98.8 4.4E-09 1.5E-13 87.0 4.6 57 196-252 15-75 (148)
35 1v85_A Similar to ring finger 98.7 2.7E-09 9.3E-14 81.7 2.2 58 195-252 22-84 (91)
36 1ow5_A Serine/threonine-protei 98.7 3.7E-09 1.3E-13 80.9 2.8 56 197-252 17-74 (85)
37 3bs5_A Protein aveugle; sterIl 98.7 2.9E-09 1E-13 84.0 2.3 59 194-252 27-88 (106)
38 2kiv_A Ankyrin repeat and ster 98.7 6.6E-09 2.3E-13 85.9 3.1 59 194-252 87-148 (148)
39 2d8c_A Phosphatidylcholine:cer 98.6 8E-09 2.8E-13 80.6 1.6 56 195-252 22-80 (97)
40 2y9u_A Tumor protein 63; apopt 98.5 3.4E-08 1.2E-12 72.8 2.2 56 197-252 6-62 (69)
41 2y9t_A Tumor protein 63; apopt 98.5 4.7E-08 1.6E-12 74.3 2.9 58 195-252 6-64 (82)
42 1oxj_A RNA-binding protein sma 98.5 3.8E-08 1.3E-12 84.1 1.9 54 197-252 9-62 (173)
43 1wwv_A Connector enhancer of k 98.2 1.5E-07 5.3E-12 72.5 0.3 54 197-252 18-74 (91)
44 3tad_C Liprin-beta-1; protein 97.8 7.1E-06 2.4E-10 74.3 2.6 57 195-251 92-149 (265)
45 3idw_A Actin cytoskeleton-regu 97.4 9E-05 3.1E-09 55.0 2.9 46 207-252 19-64 (72)
46 3tad_C Liprin-beta-1; protein 97.2 0.00021 7.1E-09 64.8 3.6 59 194-252 19-79 (265)
47 2dkz_A Hypothetical protein LO 96.8 0.00058 2E-08 52.0 2.8 58 194-251 19-78 (84)
48 1dxs_A P53-like transcription 95.4 0.011 3.6E-07 44.7 3.2 56 197-252 8-64 (80)
49 2l5y_A Stromal interaction mol 95.2 0.011 3.7E-07 49.4 3.2 51 196-246 84-140 (150)
50 3tac_B Liprin-alpha-2; transfe 94.5 0.023 7.8E-07 52.9 3.8 58 195-252 41-102 (334)
51 2k60_A Protein (stromal intera 93.9 0.012 4.1E-07 49.1 0.5 50 198-247 86-141 (150)
52 3tac_B Liprin-alpha-2; transfe 93.7 0.033 1.1E-06 51.9 3.1 53 198-250 166-220 (334)
53 2eap_A Lymphocyte cytosolic pr 93.0 0.07 2.4E-06 41.0 3.3 49 197-249 26-75 (90)
54 1uqv_A STE50 protein; SAM, ste 91.2 0.094 3.2E-06 39.9 2.1 54 198-251 17-75 (85)
55 1oey_A P67-PHOX, neutrophil cy 54.6 2.4 8.3E-05 31.8 -0.2 43 192-235 23-67 (83)
56 2p2u_A HOST-nuclease inhibitor 52.3 3.6 0.00012 34.4 0.5 44 193-238 107-150 (171)
57 2do5_A Splicing factor 3B subu 37.5 16 0.00054 25.3 1.8 23 230-252 18-41 (58)
58 3twe_A Alpha4H; unknown functi 31.2 45 0.0016 19.6 2.8 18 17-34 8-25 (27)
59 2lpe_A Kinase suppressor of RA 30.9 5.1 0.00018 33.2 -1.8 45 190-234 78-122 (149)
60 1miw_A TRNA CCA-adding enzyme; 24.5 36 0.0012 31.6 2.5 27 225-251 347-375 (404)
61 2lbg_A Major prion protein; co 23.1 91 0.0031 18.6 3.1 20 49-68 6-25 (27)
62 3h38_A TRNA nucleotidyl transf 22.7 35 0.0012 32.4 2.0 27 225-251 375-403 (441)
63 1rrm_A Lactaldehyde reductase; 20.3 1E+02 0.0034 27.8 4.5 39 193-234 322-360 (386)
64 1jei_A Emerin; membrane protei 20.1 34 0.0012 23.5 1.0 17 225-241 4-24 (53)
No 1
>3k1r_B Usher syndrome type-1G protein; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens}
Probab=99.68 E-value=7e-18 Score=125.90 Aligned_cols=58 Identities=22% Similarity=0.385 Sum_probs=55.2
Q ss_pred HHHHHHHhhcCchhhHHHHhhccCCCccccCCChhhhhhCCCCCChhHHHHHHHhhcc
Q 025331 196 ARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIPPGPRLLILDHIQSFC 253 (254)
Q Consensus 196 a~~~~~l~~Lgl~~y~~~f~~e~~~~~~l~~~~~~~Lk~~giP~gpr~~il~~~~~~~ 253 (254)
..+..+|++|||++|..+|+++++|+++|.+||++|||+||||+|||+|||++|++++
T Consensus 3 ~~v~~wL~~lgL~~Y~~~F~~~~id~e~l~~lt~~DL~~lGI~~G~RkkIl~ai~~~~ 60 (74)
T 3k1r_B 3 SPLETFLASLHMEDFAALLRQEKIDLEALMLCSDLDLRSISVPLGPREKILGAVRRRR 60 (74)
T ss_dssp CHHHHHHHTTTCGGGHHHHHHTTCCHHHHTTCCHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHCCCHHHHHHHHHcCcCHHHHhHCCHHHHHHcCCCcchHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999999998763
No 2
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=99.41 E-value=1.5e-13 Score=102.13 Aligned_cols=56 Identities=18% Similarity=0.292 Sum_probs=53.4
Q ss_pred HHHHHHhhcCchhhHHHHhhccCCCccccCCChhhhhhCCCC-CChhHHHHHHHhhc
Q 025331 197 RTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIP-PGPRLLILDHIQSF 252 (254)
Q Consensus 197 ~~~~~l~~Lgl~~y~~~f~~e~~~~~~l~~~~~~~Lk~~giP-~gpr~~il~~~~~~ 252 (254)
.+..+|+++||++|..+|.+..||..+|+.||++||++|||+ +|||+||++.|+..
T Consensus 9 ~V~~WL~~lgl~~Y~~~F~~~~idg~~Ll~Lt~~dL~~lGI~~~Ghr~kIl~aI~~l 65 (76)
T 2f3n_A 9 DVGDWLESIHLGEHRDRFEDHEIEGAHLPALTKEDFVELGVTRVGHRENIERALRQL 65 (76)
T ss_dssp HHHHHHHHTTCGGGHHHHHHTTCCGGGGGGCCHHHHHHTTCCCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHcCCCHHHHccCCHHHHHHcCCCChhHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999 89999999999865
No 3
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A
Probab=99.39 E-value=1.1e-13 Score=106.47 Aligned_cols=60 Identities=22% Similarity=0.386 Sum_probs=56.0
Q ss_pred HHHHHHHHHhhc-CchhhHHHHhhccCCCccccCCChhhh-hhCCCCCChhHHHHHHHhhcc
Q 025331 194 YYARTRGMLDKL-GLQNYTKNFKRGLLTDSTLPLLTDSAL-RDVRIPPGPRLLILDHIQSFC 253 (254)
Q Consensus 194 ~Ya~~~~~l~~L-gl~~y~~~f~~e~~~~~~l~~~~~~~L-k~~giP~gpr~~il~~~~~~~ 253 (254)
....+..+|+++ ||++|...|++++||.++|++||++|| |+|||++|||+||+++|++.+
T Consensus 18 s~edV~~wL~~l~gl~~y~~~F~~~~IdG~~LL~Lt~~dL~k~lgIklG~r~kI~~~I~~L~ 79 (89)
T 1kw4_A 18 SVDDVSNFIRELPGCQDYVDDFIQQEIDGQALLRLKEKHLVNAMGMKLGPALKIVAKVESIK 79 (89)
T ss_dssp CHHHHHHHHHTSTTCGGGHHHHHHTTCCHHHHHHCCHHHHHTTTCCCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHCcChHHHHHHHHHhCccHHHHhcCCHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 466788999999 999999999999999999999999999 899999999999999998753
No 4
>2e8n_A Ephrin type-A receptor 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=1.2e-13 Score=105.54 Aligned_cols=62 Identities=16% Similarity=0.277 Sum_probs=56.3
Q ss_pred hhhHHHHHHHHHhhcCchhhHHHHhhccCC-CccccCCChhhhhhCCCCC-ChhHHHHHHHhhc
Q 025331 191 DDVYYARTRGMLDKLGLQNYTKNFKRGLLT-DSTLPLLTDSALRDVRIPP-GPRLLILDHIQSF 252 (254)
Q Consensus 191 ~d~~Ya~~~~~l~~Lgl~~y~~~f~~e~~~-~~~l~~~~~~~Lk~~giP~-gpr~~il~~~~~~ 252 (254)
+-..+..+.++|++|||++|..+|.++.+| ++.|..|+++||++|||+. |+|+|||+.|+..
T Consensus 8 ~~~~~~~V~~WL~~lgL~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~~~GhRkkIl~ai~~l 71 (88)
T 2e8n_A 8 EGVPFRTVSEWLESIKMQQYTEHFMAAGYTAIEKVVQMTNDDVKRIGVRLPGHQKRIAYSLLGL 71 (88)
T ss_dssp CCCSCSSHHHHHHHTTCGGGHHHHHHHTCSSHHHHTTSCTTHHHHTTCCSHHHHHHHHHHHHHH
T ss_pred CCCchhhHHHHHHHCCCHHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCChhHHHHHHHHHHHH
Confidence 333467899999999999999999999999 8999999999999999996 9999999999754
No 5
>2qkq_A Ephrin type-B receptor 4; ATP-binding, glycoprotein, kinase, membrane, nucleotide- binding, phosphorylation, repeat, signal, transferase; 2.10A {Homo sapiens}
Probab=99.37 E-value=8.7e-14 Score=105.03 Aligned_cols=58 Identities=14% Similarity=0.244 Sum_probs=55.1
Q ss_pred HHHHHHHHhhcCchhhHHHHhhcc-CCCccccCCChhhhhhCCCC-CChhHHHHHHHhhc
Q 025331 195 YARTRGMLDKLGLQNYTKNFKRGL-LTDSTLPLLTDSALRDVRIP-PGPRLLILDHIQSF 252 (254)
Q Consensus 195 Ya~~~~~l~~Lgl~~y~~~f~~e~-~~~~~l~~~~~~~Lk~~giP-~gpr~~il~~~~~~ 252 (254)
+..+.++|++|||++|..+|.++. +|++.|..||++||++|||+ +|+|+||++.|+..
T Consensus 15 ~~~V~~WL~~lgL~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~~~GhrkkIl~ai~~l 74 (83)
T 2qkq_A 15 FGSVGEWLRAIKMGRYEESFAAAGFGSFELVSQISAEDLLRIGVTLAGHQKKILASVQHM 74 (83)
T ss_dssp CSSHHHHHHHTTCGGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHCCCHHHHHHHHHcCCCcHHHHhhCCHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 568999999999999999999999 89999999999999999999 89999999999864
No 6
>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell signaling, angiogenesis, apopt ATP-binding, cataract; NMR {Homo sapiens}
Probab=99.36 E-value=1.5e-13 Score=104.14 Aligned_cols=62 Identities=15% Similarity=0.193 Sum_probs=53.4
Q ss_pred hhhHHHHHHHHHhhcCchhhHHHHhhccCC-CccccCCChhhhhhCCCCC-ChhHHHHHHHhhc
Q 025331 191 DDVYYARTRGMLDKLGLQNYTKNFKRGLLT-DSTLPLLTDSALRDVRIPP-GPRLLILDHIQSF 252 (254)
Q Consensus 191 ~d~~Ya~~~~~l~~Lgl~~y~~~f~~e~~~-~~~l~~~~~~~Lk~~giP~-gpr~~il~~~~~~ 252 (254)
+...+..+.++|++|||++|..+|.++.+| ++.|..||++||++|||+. |+|+|||..|+..
T Consensus 12 ~~~~~~~V~~WL~~lgL~qY~~~F~~~gid~~~~L~~lt~~DL~~lGI~~~GhRkkIl~ai~~L 75 (82)
T 2kso_A 12 PRGSHMTVSEWLESIKMQQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRLPGHQKRIAYSLLGL 75 (82)
T ss_dssp ------CHHHHHHHTTCTTHHHHHHHTTCCSHHHHTTCCHHHHHHHHCCCTTHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHCCCHHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCChhHHHHHHHHHHHH
Confidence 334577899999999999999999999999 8999999999999999995 9999999998754
No 7
>1b4f_A EPHB2; SAM domain, EPH receptor, signal transduction, oligomer; 1.95A {Homo sapiens} SCOP: a.60.1.2 PDB: 1f0m_A 1sgg_A
Probab=99.35 E-value=2e-13 Score=102.74 Aligned_cols=58 Identities=16% Similarity=0.283 Sum_probs=54.1
Q ss_pred HHHHHHHHhhcCchhhHHHHhhccC-CCccccCCChhhhhhCCCCC-ChhHHHHHHHhhc
Q 025331 195 YARTRGMLDKLGLQNYTKNFKRGLL-TDSTLPLLTDSALRDVRIPP-GPRLLILDHIQSF 252 (254)
Q Consensus 195 Ya~~~~~l~~Lgl~~y~~~f~~e~~-~~~~l~~~~~~~Lk~~giP~-gpr~~il~~~~~~ 252 (254)
+..+.++|++|||++|..+|.++.+ |++.|..||++||++|||+. |+|+|||+.++..
T Consensus 11 ~~~v~~WL~~lgL~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~~~GhrkkIl~ai~~l 70 (82)
T 1b4f_A 11 FNTVDEWLEAIKMGQYKESFANAGFTSFDVVSQMMMEDILRVGVTLAGHQKKILNSIQVM 70 (82)
T ss_dssp CSSHHHHHHHTTCGGGHHHHHHTTCCSHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 5678999999999999999999999 78999999999999999996 9999999998754
No 8
>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=99.33 E-value=2.2e-13 Score=102.58 Aligned_cols=58 Identities=21% Similarity=0.287 Sum_probs=54.1
Q ss_pred HHHHHHHHhhcCchhhHHHHhhccCC-CccccCCChhhhhhCCCCC-ChhHHHHHHHhhc
Q 025331 195 YARTRGMLDKLGLQNYTKNFKRGLLT-DSTLPLLTDSALRDVRIPP-GPRLLILDHIQSF 252 (254)
Q Consensus 195 Ya~~~~~l~~Lgl~~y~~~f~~e~~~-~~~l~~~~~~~Lk~~giP~-gpr~~il~~~~~~ 252 (254)
+..+.++|++|||++|..+|.++.+| ++.|..|+++||++|||+. |+|+|||+.|+..
T Consensus 7 ~~~V~~WL~~lgL~~Y~~~F~~~~~d~~~~l~~lt~~DL~~lGI~~~GhrkkIl~ai~~l 66 (81)
T 1ucv_A 7 GLTVGDWLDSIRMGRYRDHFAAGGYSSLGMVLRMNAQDVRALGITLMGHQKKILGSIQTM 66 (81)
T ss_dssp CSBHHHHHHHTTCGGGHHHHHHTTCCBHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHCCCHHHHHHHHHcCCChHHHHHHcCHHHHHhCCCCChhHHHHHHHHHHHH
Confidence 45688999999999999999999999 8999999999999999996 9999999999754
No 9
>3hil_A Ephrin type-A receptor 1; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.00A {Homo sapiens} PDB: 3kka_A
Probab=99.32 E-value=6.9e-13 Score=100.73 Aligned_cols=58 Identities=24% Similarity=0.288 Sum_probs=54.5
Q ss_pred HHHHHHHHHhhcCchhhHHHHhhccCC-CccccCCChhhhhhCCCCC-ChhHHHHHHHhh
Q 025331 194 YYARTRGMLDKLGLQNYTKNFKRGLLT-DSTLPLLTDSALRDVRIPP-GPRLLILDHIQS 251 (254)
Q Consensus 194 ~Ya~~~~~l~~Lgl~~y~~~f~~e~~~-~~~l~~~~~~~Lk~~giP~-gpr~~il~~~~~ 251 (254)
.+..+.++|++|||++|..+|....+| ++.|..||++||++|||+. |+|+|||+.|+.
T Consensus 22 ~~~~V~~WL~~lgL~qY~~~F~~~g~~s~e~l~~lt~~DL~~lGIt~~GHRkkIL~aiq~ 81 (82)
T 3hil_A 22 PYRTVSEWLESIRMKRYILHFHSAGLDTMECVLELTAEDLTQMGITLPGHQKRILCSIQG 81 (82)
T ss_dssp CCSSHHHHHHHTTCGGGHHHHHHTTCCSGGGGTTCCHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHhCCHHHHHHHHHHcCCChHHHHhcCCHHHHHHCCCCCHHHHHHHHHHHHh
Confidence 456799999999999999999999999 9999999999999999996 999999999874
No 10
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=99.32 E-value=4e-13 Score=98.75 Aligned_cols=56 Identities=18% Similarity=0.321 Sum_probs=53.2
Q ss_pred HHHHHHhhcCchhhHHHHhhccCCCccccCCChhhhhhCCCC-CChhHHHHHHHhhc
Q 025331 197 RTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIP-PGPRLLILDHIQSF 252 (254)
Q Consensus 197 ~~~~~l~~Lgl~~y~~~f~~e~~~~~~l~~~~~~~Lk~~giP-~gpr~~il~~~~~~ 252 (254)
.+..+|+++||++|..+|.+..||.++|+.||++||++|||+ +|||+||++.|+..
T Consensus 11 ~V~~WL~~~gl~~y~~~F~~~~i~g~~Ll~l~~~dL~~lGI~~~g~r~kil~~i~~L 67 (74)
T 2gle_A 11 QVSHWLVGLSLDQYVSEFSAQNISGEQLLQLDGNKLKALGMTSSQDRALVKKKLKEM 67 (74)
T ss_dssp GGHHHHHHTTTHHHHHHHTTTTCCHHHHHTCCHHHHHTTTCCCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHCCCHHHHHHHHHcCCCHHHHhhCCHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999 89999999999754
No 11
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=99.31 E-value=7.6e-13 Score=99.40 Aligned_cols=59 Identities=25% Similarity=0.283 Sum_probs=54.9
Q ss_pred HHHHHHHHHhhcCchhhHHHHhhccCCCccccCCChhhhhhCCC-CCChhHHHHHHHhhc
Q 025331 194 YYARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRI-PPGPRLLILDHIQSF 252 (254)
Q Consensus 194 ~Ya~~~~~l~~Lgl~~y~~~f~~e~~~~~~l~~~~~~~Lk~~gi-P~gpr~~il~~~~~~ 252 (254)
....+..+|+++||++|..+|.+..||..+|+.||++||++||| ++|||+||++.|+..
T Consensus 11 s~~~V~~WL~~lgl~~Y~~~F~~~~idg~~Ll~Lt~~dL~~lGI~~~ghr~kIl~aI~~L 70 (81)
T 3bq7_A 11 GTEEVAAWLEHLSLCEYKDIFTRHDIRGSGLLHLERRDLKDLGVTKVGHMKRILCGIKEL 70 (81)
T ss_dssp CHHHHHHHHHHTTCGGGHHHHHHTTCCHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHcCCCHHHHCcCCHHHHhHcCCCCHHHHHHHHHHHHHH
Confidence 34578899999999999999999999999999999999999999 689999999999864
No 12
>2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=6.7e-13 Score=103.50 Aligned_cols=59 Identities=20% Similarity=0.297 Sum_probs=55.3
Q ss_pred HHHHHHHHHhhcCchhhHHHHhhccCC-CccccCCChhhhhhCCCCC-ChhHHHHHHHhhc
Q 025331 194 YYARTRGMLDKLGLQNYTKNFKRGLLT-DSTLPLLTDSALRDVRIPP-GPRLLILDHIQSF 252 (254)
Q Consensus 194 ~Ya~~~~~l~~Lgl~~y~~~f~~e~~~-~~~l~~~~~~~Lk~~giP~-gpr~~il~~~~~~ 252 (254)
.+..+.++|++|||++|..+|.++.+| ++.|..||++||++|||+. |+|+|||+.|+..
T Consensus 21 ~~~~V~~WL~~lgL~~Y~~~F~~~~~~~~~~L~~lt~~DL~~lGI~~~GhRkkIl~ai~~l 81 (99)
T 2eao_A 21 AFTTVDDWLSAIKMVQYRDSFLTAGFTSLQLVTQMTSEDLLRIGITLAGHQKKILNSIHSM 81 (99)
T ss_dssp SCCBHHHHHHTTTCGGGHHHHHHHTCCBHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHCCcHHHHHHHHHcCCChHHHHhhCCHHHHHHCCCCChhHHHHHHHHHHHH
Confidence 357899999999999999999999999 9999999999999999996 9999999999754
No 13
>1b0x_A Protein (EPHA4 receptor tyrosine kinase); protein interaction module, dimerization domain, transferase; 2.00A {Mus musculus} SCOP: a.60.1.2
Probab=99.29 E-value=5.1e-13 Score=103.27 Aligned_cols=59 Identities=17% Similarity=0.245 Sum_probs=54.9
Q ss_pred HHHHHHHHHhhcCchhhHHHHhhccC-CCccccCCChhhhhhCCCCC-ChhHHHHHHHhhc
Q 025331 194 YYARTRGMLDKLGLQNYTKNFKRGLL-TDSTLPLLTDSALRDVRIPP-GPRLLILDHIQSF 252 (254)
Q Consensus 194 ~Ya~~~~~l~~Lgl~~y~~~f~~e~~-~~~~l~~~~~~~Lk~~giP~-gpr~~il~~~~~~ 252 (254)
.+..+.++|++|||++|..+|.++.+ |++.|..|+++||++|||+. |+|+|||..|+..
T Consensus 25 ~~~~V~~WL~~lgL~~Y~~~F~~~g~~~~~~l~~lt~~DL~~lGI~~~GhrkkIl~ai~~L 85 (94)
T 1b0x_A 25 AVVSVGDWLQAIKMDRYKDNFTAAGYTTLEAVVHMSQDDLARIGITAITHQNKILSSVQAM 85 (94)
T ss_dssp SSCCHHHHHHHTTCGGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHCCcHHHHHHHHHcCCCCHHHHhhCCHHHHHHCCCCChhHHHHHHHHHHHH
Confidence 35689999999999999999999999 88999999999999999997 9999999998754
No 14
>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics, structural genomics consortium, SGC, alternative splicing, ATP-binding; 2.10A {Homo sapiens}
Probab=99.28 E-value=7e-13 Score=102.29 Aligned_cols=61 Identities=16% Similarity=0.244 Sum_probs=56.1
Q ss_pred hhHHHHHHHHHhhcCchhhHHHHhhccCC-CccccCCChhhhhhCCCCC-ChhHHHHHHHhhc
Q 025331 192 DVYYARTRGMLDKLGLQNYTKNFKRGLLT-DSTLPLLTDSALRDVRIPP-GPRLLILDHIQSF 252 (254)
Q Consensus 192 d~~Ya~~~~~l~~Lgl~~y~~~f~~e~~~-~~~l~~~~~~~Lk~~giP~-gpr~~il~~~~~~ 252 (254)
...+..+.++|++|||++|..+|.++.+| ++.|..||++||++|||+. |+|+|||..|+..
T Consensus 22 ~~~~~~V~~WL~~lgL~qY~~~F~~~g~d~~e~l~~lt~~DL~~lGIt~~GHRkkIL~ai~~L 84 (90)
T 3h8m_A 22 FTTFCSVGEWLQAIKMERYKDNFTAAGYNSLESVARMTIEDVMSLGITLVGHQKKIMSSIQTM 84 (90)
T ss_dssp CCCCSSHHHHHHHTTCGGGHHHHHHTTCCSHHHHHTCCHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHCChHHHHHHHHHcCCChHHHHhhCCHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 33567899999999999999999999999 8999999999999999996 9999999999864
No 15
>2eam_A Putative 47 kDa protein; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=1.6e-12 Score=97.47 Aligned_cols=59 Identities=22% Similarity=0.352 Sum_probs=52.7
Q ss_pred HHHHHHHHhhcCchhhHHHHhhccCCCccc---cCCChhhhhhCCCC-CChhHHHHHHHhhcc
Q 025331 195 YARTRGMLDKLGLQNYTKNFKRGLLTDSTL---PLLTDSALRDVRIP-PGPRLLILDHIQSFC 253 (254)
Q Consensus 195 Ya~~~~~l~~Lgl~~y~~~f~~e~~~~~~l---~~~~~~~Lk~~giP-~gpr~~il~~~~~~~ 253 (254)
+..+.++|++|||++|..+|.+..+|...+ ..|+++||++|||+ +|+|+|||+.|+..+
T Consensus 12 ~~~V~~WL~~lgL~~Y~~~F~~~~i~~~~~l~~~~lt~~dL~~lGI~~~ghR~kIl~ai~~L~ 74 (80)
T 2eam_A 12 VQTVGQWLESIGLPQYENHLMANGFDNVQFMGSNVMEDQDLLEIGILNSGHRQRILQAIQLLP 74 (80)
T ss_dssp CCCHHHHHHHHTCGGGHHHHHHTTCCCTTTSSSSSSCTTHHHHSSCCCHHHHHHHHHHHHHSC
T ss_pred hhHHHHHHHHCCCHHHHHHHHHcCCChHHHHhhccCCHHHHHHCCCCCHHHHHHHHHHHHHHh
Confidence 446889999999999999999999987655 59999999999998 799999999998653
No 16
>3kka_C Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.40A {Homo sapiens} SCOP: a.60.1.0
Probab=99.26 E-value=1.9e-12 Score=99.04 Aligned_cols=62 Identities=16% Similarity=0.273 Sum_probs=53.5
Q ss_pred hhhHHHHHHHHHhhcCchhhHHHHhhccCC-CccccCCChhhhhhCCCCC-ChhHHHHHHHhhc
Q 025331 191 DDVYYARTRGMLDKLGLQNYTKNFKRGLLT-DSTLPLLTDSALRDVRIPP-GPRLLILDHIQSF 252 (254)
Q Consensus 191 ~d~~Ya~~~~~l~~Lgl~~y~~~f~~e~~~-~~~l~~~~~~~Lk~~giP~-gpr~~il~~~~~~ 252 (254)
+...+..+.++|++|||++|..+|....+| ++.|..|+++||++|||+. |+|+|||..++..
T Consensus 17 d~~~~~~V~~WL~~lgL~qY~~~F~~~g~d~le~l~~lt~~DL~~LGIt~~GHRkkIL~ai~~L 80 (86)
T 3kka_C 17 QGVPFRTVSEWLESIKMQQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRLPGHQKRIAYSLLGL 80 (86)
T ss_dssp ------CHHHHHHHTTCGGGHHHHHHTTCCSHHHHHTCCHHHHHHTTCCCHHHHHHHHHHHHHC
T ss_pred cccchhHHHHHHHhCCcHHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 334567899999999999999999999999 7999999999999999997 9999999999864
No 17
>2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing protein 3; SAM domain, helix bundle, cell membrane, cell projection, cytoplasm; NMR {Homo sapiens}
Probab=99.24 E-value=2.4e-12 Score=101.05 Aligned_cols=59 Identities=24% Similarity=0.268 Sum_probs=54.6
Q ss_pred HHHHHHHHhhcCchhhHHHHhhccCC-CccccCCChhhhhhCCCCC-ChhHHHHHHHhhcc
Q 025331 195 YARTRGMLDKLGLQNYTKNFKRGLLT-DSTLPLLTDSALRDVRIPP-GPRLLILDHIQSFC 253 (254)
Q Consensus 195 Ya~~~~~l~~Lgl~~y~~~f~~e~~~-~~~l~~~~~~~Lk~~giP~-gpr~~il~~~~~~~ 253 (254)
...+..+|.+|||++|..+|.++.+| ++.|..|+++||++|||+. |+|+|||+.|+..+
T Consensus 26 ~~~V~~WL~~lgL~qY~~~F~~~gid~~~~L~~Lt~eDLkeLGIt~~GhRkkIL~aI~~Lr 86 (100)
T 2kg5_A 26 DLDIAVWLATVHLEQYADTFRRHGLATAGAARGLGHEELKQLGISATGHRKRILRLLQTGT 86 (100)
T ss_dssp TCBHHHHHGGGTCGGGHHHHHHTTCCBHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHTTTT
T ss_pred cChHHHHHHHCCCHHHHHHHHHcCCChHHHHHhcCHHHHHHCCCCChhHHHHHHHHHHHHH
Confidence 34689999999999999999999999 8999999999999999995 99999999998653
No 18
>1x40_A ARAP2; ASAP-related protein2, GTPase activity, signal transduction, SAM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=99.16 E-value=1.3e-11 Score=95.07 Aligned_cols=56 Identities=25% Similarity=0.388 Sum_probs=51.8
Q ss_pred HHHHHHhhcCchhhHHHHhhccCC-CccccCCChhhhhhCCCC-CChhHHHHHHHhhc
Q 025331 197 RTRGMLDKLGLQNYTKNFKRGLLT-DSTLPLLTDSALRDVRIP-PGPRLLILDHIQSF 252 (254)
Q Consensus 197 ~~~~~l~~Lgl~~y~~~f~~e~~~-~~~l~~~~~~~Lk~~giP-~gpr~~il~~~~~~ 252 (254)
.+.++|++|+|++|..+|.+..+| ++.|..||++||++|||. +|+|+|||..++..
T Consensus 17 ~V~~WL~~lgL~qY~~~F~~~g~~~~~~l~~lt~~DL~~lGI~~~GHrkkIl~ai~~L 74 (91)
T 1x40_A 17 DIKDFLMSINLEQYLLHFHESGFTTVKDCAAINDSLLQKIGISPTGHRRRILKQLQII 74 (91)
T ss_dssp BHHHHHHTTTCGGGHHHHHHHTCCBSGGGGGCCHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHCCCHHHHHHHHHcCCCcHHHHhhcCHHHHHHCCCCCHhHHHHHHHHHHHH
Confidence 578999999999999999999985 899999999999999996 79999999998753
No 19
>2lmr_A ODIN, ankyrin repeat and SAM domain-containing protein; signaling protein; NMR {Homo sapiens}
Probab=99.15 E-value=2e-11 Score=96.16 Aligned_cols=56 Identities=25% Similarity=0.398 Sum_probs=51.3
Q ss_pred HHHHHHhhcCchhhHHHHhhccCC-Ccccc--CCChhhhhhCCCC-CChhHHHHHHHhhc
Q 025331 197 RTRGMLDKLGLQNYTKNFKRGLLT-DSTLP--LLTDSALRDVRIP-PGPRLLILDHIQSF 252 (254)
Q Consensus 197 ~~~~~l~~Lgl~~y~~~f~~e~~~-~~~l~--~~~~~~Lk~~giP-~gpr~~il~~~~~~ 252 (254)
.+.++|++|||++|..+|....+| ++.|. .||++||++|||+ +|+|+|||..|+..
T Consensus 31 ~V~eWL~~LgL~qY~~~F~~~g~d~~e~l~~~~Lt~eDL~eLGIt~~GHRkkIL~aI~~L 90 (101)
T 2lmr_A 31 SVGEWLESIGLQQYESKLLLNGFDDVHFLGSNVMEEQDLRDIGISDPQHRRKLLQAARSL 90 (101)
T ss_dssp CHHHHHHHHTCGGGHHHHHHTTCCCTTSTTTSCCCHHHHHHHTCCCHHHHHHHHHHHHTS
T ss_pred cHHHHHHHCCCHHHHHHHHHcCCChHHHHhhccCCHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 688999999999999999999998 56777 8999999999999 59999999999864
No 20
>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Homo sapiens}
Probab=99.13 E-value=1.4e-11 Score=91.66 Aligned_cols=57 Identities=28% Similarity=0.453 Sum_probs=52.6
Q ss_pred HHHHHHHhhc--CchhhHHHHhhccCCCccccCCChhhhhhCCC-CCChhHHHHHHHhhc
Q 025331 196 ARTRGMLDKL--GLQNYTKNFKRGLLTDSTLPLLTDSALRDVRI-PPGPRLLILDHIQSF 252 (254)
Q Consensus 196 a~~~~~l~~L--gl~~y~~~f~~e~~~~~~l~~~~~~~Lk~~gi-P~gpr~~il~~~~~~ 252 (254)
..+..+|+++ ||++|..+|.+..||.++|+.||++||++||| ++|+|+||++.|+..
T Consensus 10 ~~V~~WL~~l~~gl~~Y~~~F~~~~i~G~~Ll~L~~~dL~~lGI~~~ghr~~il~~I~~L 69 (80)
T 3bs5_B 10 SQVVDWMKGLDDCLQQYIKNFEREKISGDQLLRITHQELEDLGVSRIGHQELILEAVDLL 69 (80)
T ss_dssp HHHHHHHHTSCGGGGGGHHHHHHHTCCHHHHHTCCHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHcCCCHHHHHHCCHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3578999999 59999999999999999999999999999999 689999999999753
No 21
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=3e-11 Score=94.67 Aligned_cols=59 Identities=24% Similarity=0.370 Sum_probs=55.4
Q ss_pred HHHHHHHHHhhcCchh--hHHHHhhccCCCccccCCChhhhhhCCC-CCChhHHHHHHHhhc
Q 025331 194 YYARTRGMLDKLGLQN--YTKNFKRGLLTDSTLPLLTDSALRDVRI-PPGPRLLILDHIQSF 252 (254)
Q Consensus 194 ~Ya~~~~~l~~Lgl~~--y~~~f~~e~~~~~~l~~~~~~~Lk~~gi-P~gpr~~il~~~~~~ 252 (254)
....|.++|+++||++ |..+|++.+||-..|..|+++||||||| .+|+|+||++.|+..
T Consensus 31 s~~~V~~WL~~lgl~~~~y~~~F~~~~I~G~~Ll~Lt~~dLkeLGI~~~G~R~kil~~I~~L 92 (103)
T 2e8o_A 31 GPEQVCSFLRRGGFEEPVLLKNIRENEITGALLPCLDESRFENLGVSSLGERKKLLSYIQRL 92 (103)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHTTCCTTTTTTCCHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCChHHHHHHHHHcCCCHHHHHhCCHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4678899999999998 9999999999999999999999999999 789999999999864
No 22
>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=1.8e-11 Score=91.94 Aligned_cols=58 Identities=28% Similarity=0.428 Sum_probs=53.3
Q ss_pred HHHHHHHHhhc--CchhhHHHHhhccCCCccccCCChhhhhhCCC-CCChhHHHHHHHhhc
Q 025331 195 YARTRGMLDKL--GLQNYTKNFKRGLLTDSTLPLLTDSALRDVRI-PPGPRLLILDHIQSF 252 (254)
Q Consensus 195 Ya~~~~~l~~L--gl~~y~~~f~~e~~~~~~l~~~~~~~Lk~~gi-P~gpr~~il~~~~~~ 252 (254)
-..+..+|+.+ ||++|..+|.+..||.++|+.||++||++||| ++|+|++|++.|+..
T Consensus 13 ~~~V~~WL~~l~~gl~~Y~~~F~~~~I~G~~Ll~Lt~~dL~~LGI~~~ghr~~il~~I~~L 73 (83)
T 2ean_A 13 PSQVVDWMKGLDDCLQQYIKNFEREKISGDQLLRITHQELEDLGVSRIGHQELILEAVDLL 73 (83)
T ss_dssp TTHHHHHHTTSCGGGTTTHHHHHHHTCCHHHHTTCCHHHHHHHTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHCCCCHHHHhhCCHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 34689999999 59999999999999999999999999999999 589999999999753
No 23
>2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix bundle, signaling protein, actin-binding, alternative splicing, cell adhesion; NMR {Homo sapiens} PDB: 2kso_B
Probab=99.10 E-value=2.7e-11 Score=92.76 Aligned_cols=56 Identities=21% Similarity=0.338 Sum_probs=51.3
Q ss_pred HHHHHHhhcCchhhHHHHhhccCC-CccccCCChhhhhhCCCC-CChhHHHHHHHhhc
Q 025331 197 RTRGMLDKLGLQNYTKNFKRGLLT-DSTLPLLTDSALRDVRIP-PGPRLLILDHIQSF 252 (254)
Q Consensus 197 ~~~~~l~~Lgl~~y~~~f~~e~~~-~~~l~~~~~~~Lk~~giP-~gpr~~il~~~~~~ 252 (254)
.+.++|++|||++|..+|....+| ++.|..||++||++|||+ +|+|+|||..|+..
T Consensus 28 ~V~eWL~~lgL~qY~~~F~~~g~~~le~l~~lt~~DL~~lGIt~~GHRkkIL~aI~~L 85 (86)
T 2k4p_A 28 GMSAWLRAIGLERYEEGLVHNGWDDLEFLSDITEEDLEEAGVQDPAHKRLLLDTLQLS 85 (86)
T ss_dssp SSHHHHHTTTCGGGHHHHHTTTCCCHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHHC
T ss_pred cHHHHHHHCCCHHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCCHHHHHHHHHHHHHc
Confidence 467899999999999999999985 699999999999999999 59999999998753
No 24
>2d3d_A VTS1 protein; RNA binding, SAM domain, SRE hairpin binding, RNA binding protein; 1.60A {Saccharomyces cerevisiae} PDB: 2f8k_A 2fe9_A
Probab=99.01 E-value=1.1e-10 Score=90.04 Aligned_cols=55 Identities=20% Similarity=0.184 Sum_probs=50.9
Q ss_pred HHHHHHHHhhcCchhhHHHHhhccCCCccccCCChhhhhhCCCC-CChhHHHHHHHhh
Q 025331 195 YARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIP-PGPRLLILDHIQS 251 (254)
Q Consensus 195 Ya~~~~~l~~Lgl~~y~~~f~~e~~~~~~l~~~~~~~Lk~~giP-~gpr~~il~~~~~ 251 (254)
+..+..+|++|+|.||..+|+ .++++++..|||+||+++||- +|+|+|||..|+.
T Consensus 18 ~~~V~~WL~sLrLhKY~~~F~--~~~~~~l~~LtdedL~~~GVta~GaRrKil~aI~~ 73 (88)
T 2d3d_A 18 LKNIPMWLKSLRLHKYSDALS--GTPWIELIYLDDETLEKKGVLALGARRKLLKAFGI 73 (88)
T ss_dssp HTCHHHHHHHTTCGGGHHHHT--TSCHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHcccchhHHHHh--cCCHHHHHHcCHHHHHHcCCccHhHHHHHHHHHHH
Confidence 556899999999999999996 489999999999999999999 9999999998874
No 25
>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers, transcriptional repression, transcription repression; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk3_A
Probab=98.99 E-value=1.6e-10 Score=89.00 Aligned_cols=59 Identities=14% Similarity=0.196 Sum_probs=54.3
Q ss_pred HHHHHHHHHhhc--CchhhHHHHhhccCCCccccCCChhhh-hhCCCCCChhHHHHHHHhhc
Q 025331 194 YYARTRGMLDKL--GLQNYTKNFKRGLLTDSTLPLLTDSAL-RDVRIPPGPRLLILDHIQSF 252 (254)
Q Consensus 194 ~Ya~~~~~l~~L--gl~~y~~~f~~e~~~~~~l~~~~~~~L-k~~giP~gpr~~il~~~~~~ 252 (254)
....+..+|+++ |+++|...|++.+||-.+|++||++|| ++|||++|||+||.++|++.
T Consensus 18 svedV~~wl~~~~~g~~~y~~~F~~~eIDG~aLL~Lt~~dl~~~mgiklGpalKi~~~I~~l 79 (89)
T 1pk1_B 18 TIEEVIQYIESNDNSLAVHGDLFRKHEIDGKALLRLNSERMMKYMGLKLGPALKICNLVNKV 79 (89)
T ss_dssp CHHHHHHHHHHHCGGGGGGHHHHHHTTCCHHHHHTCCHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccchHHHHHHHHHcCcChHHHhcCCHHHHHHccCCCccHHHHHHHHHHHH
Confidence 466788999999 799999999999999999999999998 57999999999999999865
No 26
>2ke7_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, alternative splicing, ANK repeat, cell junction, cell membrane; NMR {Homo sapiens}
Probab=98.98 E-value=6.6e-11 Score=92.88 Aligned_cols=58 Identities=22% Similarity=0.375 Sum_probs=52.0
Q ss_pred HHHHHHHHhhcCchhhHHHHhhccCCCccc---cCCChhhhhhCCCC-CChhHHHHHHHhhc
Q 025331 195 YARTRGMLDKLGLQNYTKNFKRGLLTDSTL---PLLTDSALRDVRIP-PGPRLLILDHIQSF 252 (254)
Q Consensus 195 Ya~~~~~l~~Lgl~~y~~~f~~e~~~~~~l---~~~~~~~Lk~~giP-~gpr~~il~~~~~~ 252 (254)
+..+.++|+++||++|..+|.+..+|...+ ..||++||++|||. +|+|+|||..++..
T Consensus 22 ~~~V~~WL~~igL~qY~~~F~~~gid~~~~l~~~~lt~~DL~~lGI~~~GhRkkIl~ai~~L 83 (103)
T 2ke7_A 22 VQTVGQWLESIGLPQYENHLMANGFDNVQFMGSNVMEDQDLLEIGILNSGHRQRILQAIQLL 83 (103)
T ss_dssp -CCTTHHHHHTTCTTCHHHHHHTTCCCHHHHHTTCCCHHHHHHHTCCCHHHHHHHHHHHHHS
T ss_pred HhHHHHHHHHCCCHHHHHHHHHcCCCcHHHHhcccCCHHHHhHCCCCCHHHHHHHHHHHHHH
Confidence 345788999999999999999999998876 59999999999998 79999999998754
No 27
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A
Probab=98.97 E-value=3.8e-10 Score=93.87 Aligned_cols=63 Identities=21% Similarity=0.228 Sum_probs=58.5
Q ss_pred chhhHHHHHHHHHhhcCchhhHHHHhhccCCCccccCCChhhhhhCCCCC-ChhHHHHHHHhhc
Q 025331 190 ADDVYYARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIPP-GPRLLILDHIQSF 252 (254)
Q Consensus 190 ~~d~~Ya~~~~~l~~Lgl~~y~~~f~~e~~~~~~l~~~~~~~Lk~~giP~-gpr~~il~~~~~~ 252 (254)
++...+..+.++|+++||++|..+|....+|.+.|..||++||++|||.. |+|+||+..|+..
T Consensus 5 ~~~~~~~~V~~WL~~lgL~~Y~~~F~~~g~d~~~l~~lt~~DL~~lGIt~~gHrkkil~ai~~L 68 (149)
T 3sei_A 5 REGKSSEAVSQWLTAFQLQLYAPNFISAGYDLPTISRMTPEDLTAIGVTKPGHRKKIAAEISGL 68 (149)
T ss_dssp HHHHHHHHHHHHHHTTTCGGGHHHHHHTTCCHHHHTTCCHHHHHHTTCCSHHHHHHHHHHHHTC
T ss_pred cccCcHHHHHHHHHHCCcHHHHHHHHHcCCCHHHHccCCHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 46667889999999999999999999999999999999999999999985 9999999999864
No 28
>1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical protein, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.60.1.2
Probab=98.95 E-value=1.8e-10 Score=86.20 Aligned_cols=57 Identities=23% Similarity=0.334 Sum_probs=51.8
Q ss_pred HHHHHHHhhcCchhhHHHHhhccCC-CccccCCChhhhhhCCCC-CChhHHHHHHHhhc
Q 025331 196 ARTRGMLDKLGLQNYTKNFKRGLLT-DSTLPLLTDSALRDVRIP-PGPRLLILDHIQSF 252 (254)
Q Consensus 196 a~~~~~l~~Lgl~~y~~~f~~e~~~-~~~l~~~~~~~Lk~~giP-~gpr~~il~~~~~~ 252 (254)
..+.++|+.++|++|..+|....+| ++.+..++++||++|||+ +|+|+|||..++..
T Consensus 13 ~~V~eWL~~i~L~~Y~~~F~~~gy~~~~~~~~lt~~DL~~lGI~~~ghrkkil~ai~~L 71 (78)
T 1v38_A 13 QTIQEFLERIHLQEYTSTLLLNGYETLDDLKDIKESHLIELNIADPEDRARLLSAAESL 71 (78)
T ss_dssp CBHHHHHHTTTCGGGHHHHHHHTCCBHHHHTTCCHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHCCCHHHHHHHHHcCCCCHHHHhhcCHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3678899999999999999999985 799999999999999998 69999999988753
No 29
>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=2.3e-10 Score=89.29 Aligned_cols=60 Identities=18% Similarity=0.243 Sum_probs=55.4
Q ss_pred hHHHHHHHHHhhcCchhhHHHHhhccCC-CccccCCChhhhhhCCCC-CChhHHHHHHHhhc
Q 025331 193 VYYARTRGMLDKLGLQNYTKNFKRGLLT-DSTLPLLTDSALRDVRIP-PGPRLLILDHIQSF 252 (254)
Q Consensus 193 ~~Ya~~~~~l~~Lgl~~y~~~f~~e~~~-~~~l~~~~~~~Lk~~giP-~gpr~~il~~~~~~ 252 (254)
..+..+.++|..|||++|..+|....+| ++.+..|+++||++|||. +|.|+|||+.++..
T Consensus 21 ~~~~sV~eWL~~igL~qY~~~F~~~g~d~le~l~~lt~~DL~~lGIt~~gHrkkIl~ai~~l 82 (97)
T 2dl0_A 21 GCISSVSDWLISIGLPMYAGTLSTAGFSTLSQVPSLSHTCLQEAGITEERHIRKLLSAARLF 82 (97)
T ss_dssp SCCCSHHHHHHHHTCGGGHHHHHHHTCCSTTSGGGCCHHHHHHHTCCCHHHHHHHHHHHHTC
T ss_pred cccCcHHHHHHHCCCHHHHHHHHHcCCCcHHHHHhcCHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999 699999999999999998 79999999999754
No 30
>2b6g_A VTS1P; alpha-helix, pentaloop, hairpin, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.95 E-value=1.8e-10 Score=93.32 Aligned_cols=56 Identities=20% Similarity=0.182 Sum_probs=50.8
Q ss_pred HHHHHHHHHhhcCchhhHHHHhhccCCCccccCCChhhhhhCCCC-CChhHHHHHHHhh
Q 025331 194 YYARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIP-PGPRLLILDHIQS 251 (254)
Q Consensus 194 ~Ya~~~~~l~~Lgl~~y~~~f~~e~~~~~~l~~~~~~~Lk~~giP-~gpr~~il~~~~~ 251 (254)
.+..+.++|++|+|.||..+| +.+|++.|+.|+|+||+++||. +|+|+|||..|+.
T Consensus 48 ~~~dV~~WL~sLrL~KY~~~F--~~~~~d~l~~LTeeDL~~lGVta~GaRrKlL~AI~~ 104 (119)
T 2b6g_A 48 LLKNIPMWLKSLRLHKYSDAL--SGTPWIELIYLDDETLEKKGVLALGARRKLLKAFGI 104 (119)
T ss_dssp HHHCHHHHHHHHTCHHHHHHH--TTSCHHHHTTCCHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHCCChhHHHHH--ccCCHHHHHhcCHHHHHHCCCCccccHHHHHHHHHH
Confidence 356677899999999999999 5699999999999999999998 9999999988763
No 31
>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm, membrane, sensory transduction, vision, signaling protein; 1.90A {Drosophila melanogaster}
Probab=98.90 E-value=4.1e-10 Score=83.32 Aligned_cols=57 Identities=19% Similarity=0.206 Sum_probs=52.9
Q ss_pred HHHHHHHhhc--CchhhHHHHhhccCCCccccCCChhhhhhCCCC-CChhHHHHHHHhhc
Q 025331 196 ARTRGMLDKL--GLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIP-PGPRLLILDHIQSF 252 (254)
Q Consensus 196 a~~~~~l~~L--gl~~y~~~f~~e~~~~~~l~~~~~~~Lk~~giP-~gpr~~il~~~~~~ 252 (254)
..+..+|+.+ ||++|..+|.+..||-.+|+.||++||++|||. +|+|++|++.|+..
T Consensus 9 ~~V~~WL~~~~~gl~~y~~~F~~~~I~G~~Ll~L~~~dL~~lGI~~~g~r~~il~~I~~L 68 (78)
T 3bs7_A 9 SDVLKWYRRHCGEYTQYEQLFAQHDITGRALLRITDSSLQRMGVTDNRDREAIWREIVKQ 68 (78)
T ss_dssp HHHHHHHHHHSGGGGGGHHHHHHTTCCHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHCCCCHHHHhhCCHHHHhHcCCCCHHHHHHHHHHHHHH
Confidence 3578999998 999999999999999999999999999999997 79999999999754
No 32
>2es6_A VTS1P; SAM domain, protein structure, gene regulation; NMR {Saccharomyces cerevisiae} PDB: 2ese_A
Probab=98.86 E-value=6.1e-10 Score=87.78 Aligned_cols=56 Identities=20% Similarity=0.201 Sum_probs=51.5
Q ss_pred HHHHHHHHHhhcCchhhHHHHhhccCCCccccCCChhhhhhCCCC-CChhHHHHHHHhh
Q 025331 194 YYARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIP-PGPRLLILDHIQS 251 (254)
Q Consensus 194 ~Ya~~~~~l~~Lgl~~y~~~f~~e~~~~~~l~~~~~~~Lk~~giP-~gpr~~il~~~~~ 251 (254)
-+..+..+|++|+|.||..+|+. ++++++..+||+||+++||- +|+|+|||..|+.
T Consensus 30 ~~~dV~~WLksLrLhKY~~~F~~--~~~~~l~~LTdedL~~~GVta~GARrKiL~aI~~ 86 (101)
T 2es6_A 30 LLKNIPMWLKSLRLHKYSDALSG--TPWIELIYLDDETLEKKGVLALGARRKLLKAFGI 86 (101)
T ss_dssp HHTCHHHHHHTTTCCCTHHHHTT--SCHHHHTTCCHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHccCcchHHHHcc--CCHHHHHhcCHHHHHHcCCccHhHHHHHHHHHHH
Confidence 35678999999999999999965 89999999999999999999 9999999998864
No 33
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A
Probab=98.85 E-value=8.6e-10 Score=91.72 Aligned_cols=56 Identities=18% Similarity=0.181 Sum_probs=52.8
Q ss_pred HHHHHHHhhcCchhhHHHHhhccCC-CccccCCChhhhhhCCCC-CChhHHHHHHHhh
Q 025331 196 ARTRGMLDKLGLQNYTKNFKRGLLT-DSTLPLLTDSALRDVRIP-PGPRLLILDHIQS 251 (254)
Q Consensus 196 a~~~~~l~~Lgl~~y~~~f~~e~~~-~~~l~~~~~~~Lk~~giP-~gpr~~il~~~~~ 251 (254)
..+.++|++|||++|..+|....+| ++.|..+|++||++|||+ +|+|+|||+.|+.
T Consensus 80 ~~v~~WL~~igL~qY~~~F~~~g~d~~~~l~~lt~~dL~~lGI~~~gHr~kIl~ai~~ 137 (149)
T 3sei_A 80 ANLAVWLSMIGLAQYYKVLVDNGYENIDFITDITWEDLQEIGITKLGHQKKLMLAVRK 137 (149)
T ss_dssp SCHHHHHHHTTCGGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHcCchhhHHHHHHCCCchHHHHhhCCHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999999999 799999999999999997 7999999999974
No 34
>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens}
Probab=98.77 E-value=4.4e-09 Score=86.99 Aligned_cols=57 Identities=23% Similarity=0.361 Sum_probs=51.3
Q ss_pred HHHHHHHhhcCchhhHHHHhhccCCCcccc---CCChhhhhhCCCC-CChhHHHHHHHhhc
Q 025331 196 ARTRGMLDKLGLQNYTKNFKRGLLTDSTLP---LLTDSALRDVRIP-PGPRLLILDHIQSF 252 (254)
Q Consensus 196 a~~~~~l~~Lgl~~y~~~f~~e~~~~~~l~---~~~~~~Lk~~giP-~gpr~~il~~~~~~ 252 (254)
..+.++|+++||++|..+|....+|..++. .||++||++|||. +|+|+||+..|+..
T Consensus 15 ~~V~~WL~~igL~~Y~~~F~~~g~d~~~~l~~~~lt~~DL~~lGI~~~ghRkkil~ai~~L 75 (148)
T 2kiv_A 15 QTVGQWLESIGLPQYENHLMANGFDNVQAMGSNVMEDQDLLEIGILNSGHRQRILQAIQLL 75 (148)
T ss_dssp CBHHHHHHHHSCTTSHHHHHHTTTTBGGGGTSSCCCHHHHHHHCCSSTTSHHHHHHHHHHC
T ss_pred chHHHHHHHCCCHHHHHHHHHcCCCHHHHhhhccCCHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 357889999999999999999999995544 8999999999999 79999999999754
No 35
>1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=98.74 E-value=2.7e-09 Score=81.71 Aligned_cols=58 Identities=21% Similarity=0.267 Sum_probs=54.2
Q ss_pred HHHHHHHHhhcCc--hhhHHHHhhccCCCccccCCChhhhhh--CCCC-CChhHHHHHHHhhc
Q 025331 195 YARTRGMLDKLGL--QNYTKNFKRGLLTDSTLPLLTDSALRD--VRIP-PGPRLLILDHIQSF 252 (254)
Q Consensus 195 Ya~~~~~l~~Lgl--~~y~~~f~~e~~~~~~l~~~~~~~Lk~--~giP-~gpr~~il~~~~~~ 252 (254)
...+..+|+++|+ ++|..+|.+..||-..|..||++||++ |||. .|.|++|++.|+..
T Consensus 22 ~~dV~~WL~~~gl~~~~Y~~~F~~~~IdG~~Ll~Lt~~dL~~~~LGI~~~g~r~~il~~I~~L 84 (91)
T 1v85_A 22 TEEVVLWLEQLGPWASLYRDRFLSERVNGRLLLTLTEEEFSRAPYTIENSSHRRVILTELERV 84 (91)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHTTCCHHHHHHCCHHHHHSTTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHhcCCHHHHhccCCCCCCHHHHHHHHHHHHHH
Confidence 5678999999999 999999999999999999999999999 9996 69999999999864
No 36
>1ow5_A Serine/threonine-protein kinase STE11; MAP kinase, MAPKKK, SAM domain, pointed domain, SCM domain, STE50 regulator, transferase; NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB: 1x9x_A
Probab=98.74 E-value=3.7e-09 Score=80.91 Aligned_cols=56 Identities=25% Similarity=0.377 Sum_probs=53.1
Q ss_pred HHHHHHhhcCchhhHHHHhhccCCC-ccccCCChhhhhhCCCC-CChhHHHHHHHhhc
Q 025331 197 RTRGMLDKLGLQNYTKNFKRGLLTD-STLPLLTDSALRDVRIP-PGPRLLILDHIQSF 252 (254)
Q Consensus 197 ~~~~~l~~Lgl~~y~~~f~~e~~~~-~~l~~~~~~~Lk~~giP-~gpr~~il~~~~~~ 252 (254)
.+.++|.++||++|...|....|++ +.|+.|+.++||||||- +|.|++||..++.-
T Consensus 17 ~v~~wL~si~c~qY~~~F~eN~I~g~d~L~eLd~e~LkElGI~kvGdRirIlk~vk~L 74 (85)
T 1ow5_A 17 FVQLFLEEIGCTQYLDSFIQCNLVTEEEIKYLDKDILIALGVNKIGDRLKILRKSKSF 74 (85)
T ss_dssp HHHHHHHHHSCTHHHHHHHHHTCCCHHHHHHCCHHHHHHHTCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCChhHHHHHHHcCCCcHHHHHHcCHHHHHHhCCCcccHHHHHHHHHHHH
Confidence 7999999999999999999999999 99999999999999996 59999999998754
No 37
>3bs5_A Protein aveugle; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Drosophila melanogaster}
Probab=98.73 E-value=2.9e-09 Score=84.04 Aligned_cols=59 Identities=19% Similarity=0.182 Sum_probs=54.9
Q ss_pred HHHHHHHHHhhc--CchhhHHHHhhccCCCccccCCChhhhhhCCCC-CChhHHHHHHHhhc
Q 025331 194 YYARTRGMLDKL--GLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIP-PGPRLLILDHIQSF 252 (254)
Q Consensus 194 ~Ya~~~~~l~~L--gl~~y~~~f~~e~~~~~~l~~~~~~~Lk~~giP-~gpr~~il~~~~~~ 252 (254)
....+..+|+++ |+++|..+|.+..||-.+|+.|+++|||+|||. .|+|++|++.|+..
T Consensus 27 t~~~V~~WL~~~~~gl~~Y~~~F~~~~I~G~~Ll~Lt~~dLk~LGI~~~GhR~kIl~~I~~L 88 (106)
T 3bs5_A 27 TVSDVLKWYRRHCGEYTQYEQLFAQHDITGRALLRITDSSLQRMGVTDNRDREAIWREIVKQ 88 (106)
T ss_dssp CHHHHHHHHHHHSGGGGGGHHHHHHTTCCHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcchHHHHHHHHHcCccHHHHhhCCHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 466789999999 999999999999999999999999999999996 69999999999754
No 38
>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens}
Probab=98.68 E-value=6.6e-09 Score=85.92 Aligned_cols=59 Identities=25% Similarity=0.252 Sum_probs=53.6
Q ss_pred HHHHHHHHHhhcCchhhHHHHhhccCC-CccccCCChhhh-hhCCCC-CChhHHHHHHHhhc
Q 025331 194 YYARTRGMLDKLGLQNYTKNFKRGLLT-DSTLPLLTDSAL-RDVRIP-PGPRLLILDHIQSF 252 (254)
Q Consensus 194 ~Ya~~~~~l~~Lgl~~y~~~f~~e~~~-~~~l~~~~~~~L-k~~giP-~gpr~~il~~~~~~ 252 (254)
...++.++|.++||++|..+|....+| ++.|..||++|| ++|||+ +|+|+|||+.++.+
T Consensus 87 ~~~~v~~WL~~i~L~qY~~~F~~~g~~~~~~l~~lt~~dLl~~lGI~~~gHrkrIl~ai~~~ 148 (148)
T 2kiv_A 87 HPTSVAEWLDSIELGDYTKAFLINGYTSMDLLKKIAEVELINVLKINLIGHRKRILASLGDR 148 (148)
T ss_dssp CCSSHHHHHHTTTCCTHHHHHHHHTCCSHHHHTSCCHHHHHHHTCCCCHHHHHHHHHHHTCC
T ss_pred CcchHHHHHHHCCcHHHHHHHHHcCCChHHHHHhCCHHHHHHhCCCCChhHHHHHHHHHhhC
Confidence 456899999999999999999999996 599999999997 999996 89999999998754
No 39
>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free protein synthesis, protein regulation, lipid metabolism, structural genomics; NMR {Mus musculus} SCOP: a.60.1.2
Probab=98.61 E-value=8e-09 Score=80.60 Aligned_cols=56 Identities=16% Similarity=0.218 Sum_probs=50.8
Q ss_pred HHHHHHHHhhcCchhhHHHHhhccCCCccccCCChhhhhh--CCC-CCChhHHHHHHHhhc
Q 025331 195 YARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRD--VRI-PPGPRLLILDHIQSF 252 (254)
Q Consensus 195 Ya~~~~~l~~Lgl~~y~~~f~~e~~~~~~l~~~~~~~Lk~--~gi-P~gpr~~il~~~~~~ 252 (254)
...|..+|+++||++|...| +. ||-.+|..||++|||+ ||| ..|+|+||++.|+..
T Consensus 22 ~edV~~WL~~~Gl~~Y~~~F-~~-IdG~~LL~Lt~~dLk~~~LgI~~~g~rkkl~~~I~~L 80 (97)
T 2d8c_A 22 PKKVADWLLENAMPEYCEPL-EH-FTGQDLINLTQEDFKKPPLYRVSSDNGQRLLDMIETL 80 (97)
T ss_dssp TTHHHHHHHHTTCTTTTTTT-TT-CCHHHHHTCCHHHHHSSSSSSCSTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHH-Hc-CCCHHHhcCCHHHHhhCCCCCCCHHHHHHHHHHHHHH
Confidence 44688999999999999999 55 9999999999999999 998 689999999999753
No 40
>2y9u_A Tumor protein 63; apoptosis, sterIle alpha motif, 5-helix bundle, mutations, A syndrome; 1.60A {Homo sapiens} PDB: 1rg6_A
Probab=98.50 E-value=3.4e-08 Score=72.78 Aligned_cols=56 Identities=23% Similarity=0.290 Sum_probs=51.3
Q ss_pred HHHHHHhhcCchhhHHHHh-hccCCCccccCCChhhhhhCCCCCChhHHHHHHHhhc
Q 025331 197 RTRGMLDKLGLQNYTKNFK-RGLLTDSTLPLLTDSALRDVRIPPGPRLLILDHIQSF 252 (254)
Q Consensus 197 ~~~~~l~~Lgl~~y~~~f~-~e~~~~~~l~~~~~~~Lk~~giP~gpr~~il~~~~~~ 252 (254)
++.++|.+++++.|..+|. .+..+++.+..||-+||+.||||.|+||||++-++..
T Consensus 6 sv~~WLd~i~m~~Y~d~F~~~g~~s~~~v~~lt~eDL~~~GIt~ghqkkIl~siq~l 62 (69)
T 2y9u_A 6 SIVSFLARLGCSSCLDYFTTQGLTTIYQIEHYSMDDLASLKIPEQFRHAIWKGILDH 62 (69)
T ss_dssp BHHHHHHTTTCGGGHHHHHTTTCCBHHHHTTCCHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHcCChHHHHHHHHcCCCcHHHHHHcCHHHHHhcCCChhhHHHHHHhHHHH
Confidence 5889999999999999986 4677899999999999999999999999999988754
No 41
>2y9t_A Tumor protein 63; apoptosis, sterIle alpha motif, 5-helix bundle; NMR {Homo sapiens}
Probab=98.50 E-value=4.7e-08 Score=74.32 Aligned_cols=58 Identities=22% Similarity=0.267 Sum_probs=52.6
Q ss_pred HHHHHHHHhhcCchhhHHHHh-hccCCCccccCCChhhhhhCCCCCChhHHHHHHHhhc
Q 025331 195 YARTRGMLDKLGLQNYTKNFK-RGLLTDSTLPLLTDSALRDVRIPPGPRLLILDHIQSF 252 (254)
Q Consensus 195 Ya~~~~~l~~Lgl~~y~~~f~-~e~~~~~~l~~~~~~~Lk~~giP~gpr~~il~~~~~~ 252 (254)
+.++.++|..++++.|..+|. .+..+++.+..||-+||+.||||.|+||||++-++..
T Consensus 6 ~~SV~~WLd~i~m~~Y~d~F~~~G~~sl~~V~~lt~eDL~~mGIt~gHqkkIl~siq~l 64 (82)
T 2y9t_A 6 DCSIVSFLARLGCSSCLDYFTTQGLTTIYQIEHYSMDDLASLKIPEQFRHAIWKGILDH 64 (82)
T ss_dssp SSBHHHHHHHHTCGGGHHHHHTTTCCBSGGGTTCCHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCchHHHHHHHHcCCCcHHHHHhcCHHHHHhcCCChhhHHHHHhhHHHH
Confidence 346899999999999999986 5677899999999999999999999999999988754
No 42
>1oxj_A RNA-binding protein smaug; SAM domain, PHAT domain; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 a.118.1.13
Probab=98.47 E-value=3.8e-08 Score=84.08 Aligned_cols=54 Identities=24% Similarity=0.321 Sum_probs=50.1
Q ss_pred HHHHHHhhcCchhhHHHHhhccCCCccccCCChhhhhhCCCCCChhHHHHHHHhhc
Q 025331 197 RTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIPPGPRLLILDHIQSF 252 (254)
Q Consensus 197 ~~~~~l~~Lgl~~y~~~f~~e~~~~~~l~~~~~~~Lk~~giP~gpr~~il~~~~~~ 252 (254)
.+..+|++|+|.||..+|.. ++++++..+||+||+++||-.|.|+||+..|+..
T Consensus 9 dV~~WLksLrLhKY~~~F~~--~~~e~~~~LTdedL~~~GVT~GARrKIL~aIq~L 62 (173)
T 1oxj_A 9 GIGLWLKSLRLHKYIELFKN--MTYEEMLLITEDFLQSVGVTKGASHKLALCIDKL 62 (173)
T ss_dssp THHHHHHHTTCGGGGGGGTT--CCHHHHTTCCHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcccchhHHHHcc--CCHHHHHhcCHHHHHHCCCchHHHHHHHHHHHHH
Confidence 57899999999999999965 8999999999999999999999999999988753
No 43
>1wwv_A Connector enhancer of kinase suppressor of RAS 1; structural genomics, protein regulation, transcription; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=98.24 E-value=1.5e-07 Score=72.47 Aligned_cols=54 Identities=26% Similarity=0.379 Sum_probs=48.9
Q ss_pred HHHHHHhhc--CchhhHHHHhhccCCCccccCCChhhhhhCCCC-CChhHHHHHHHhhc
Q 025331 197 RTRGMLDKL--GLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIP-PGPRLLILDHIQSF 252 (254)
Q Consensus 197 ~~~~~l~~L--gl~~y~~~f~~e~~~~~~l~~~~~~~Lk~~giP-~gpr~~il~~~~~~ 252 (254)
.+..+|+.| ++.+| +|.+..|+-.+|..||++||++|||- .|.|++|++.|+..
T Consensus 18 ~V~~WL~~l~~~l~~Y--~F~~~~I~G~~LL~Lt~~dL~~LGI~~~Ghr~~Il~~I~~L 74 (91)
T 1wwv_A 18 KVATWLRGLDDSLQDY--PFEDWQLPGKNLLQLCPQSLEALAVRSLGHQELILGGVEQL 74 (91)
T ss_dssp THHHHHHHHCHHHHTS--CHHHHCCCHHHHTTCCTTTGGGGTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCccccc--cHHhcCccHHHHhhCCHHHHHHcCCCcHhHHHHHHHHHHHH
Confidence 478889966 79999 89999999999999999999999995 69999999999754
No 44
>3tad_C Liprin-beta-1; protein binding; 2.90A {Mus musculus}
Probab=97.80 E-value=7.1e-06 Score=74.35 Aligned_cols=57 Identities=25% Similarity=0.361 Sum_probs=53.0
Q ss_pred HHHHHHHHhhcCchhhHHHHhhccCCCccccCCChhhhhhCCCC-CChhHHHHHHHhh
Q 025331 195 YARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIP-PGPRLLILDHIQS 251 (254)
Q Consensus 195 Ya~~~~~l~~Lgl~~y~~~f~~e~~~~~~l~~~~~~~Lk~~giP-~gpr~~il~~~~~ 251 (254)
..-+..+|.++||.+|...|..-.||-..|..+|++||+++||. .|+|++|+..|+.
T Consensus 92 ~~wv~~WL~~IGL~QY~~~F~~~~iDg~~L~~LT~~DL~~LGIt~~~HR~kil~aI~~ 149 (265)
T 3tad_C 92 FNWVTRWLDDIGLPQYKTQFDEGRVDGRMLHYMTVDDLLSLKVVSVLHHLSIKRAIQV 149 (265)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHHHTCCHHHHHTCBHHHHHHTTCCBHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCcHHHHHHHHHcCCCHHHhcccCHHHHHHcCCCcHHhHHHHHHHHHH
Confidence 44567999999999999999999999999999999999999998 7999999998863
No 45
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=97.37 E-value=9e-05 Score=54.99 Aligned_cols=46 Identities=30% Similarity=0.528 Sum_probs=43.7
Q ss_pred chhhHHHHhhccCCCccccCCChhhhhhCCCCCChhHHHHHHHhhc
Q 025331 207 LQNYTKNFKRGLLTDSTLPLLTDSALRDVRIPPGPRLLILDHIQSF 252 (254)
Q Consensus 207 l~~y~~~f~~e~~~~~~l~~~~~~~Lk~~giP~gpr~~il~~~~~~ 252 (254)
.++|..+|.++.||.+-||-++.+-|++|||-.|=-.+|+.|++..
T Consensus 19 c~rYA~~F~~~ri~e~mL~Dl~~~~Lr~LGi~eGDIIrVmk~l~~k 64 (72)
T 3idw_A 19 CQRYTINFDREQLTEDMMPDINNSMLRTLGLREGDIVRVMKHLDKK 64 (72)
T ss_dssp HHHHHHHHHHTTCCGGGGGGCCHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCHHHHhhCCHHHHHHcCCchhhHHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999999854
No 46
>3tad_C Liprin-beta-1; protein binding; 2.90A {Mus musculus}
Probab=97.17 E-value=0.00021 Score=64.76 Aligned_cols=59 Identities=19% Similarity=0.191 Sum_probs=53.6
Q ss_pred HHHHHHHHHhhcCchhhHHHHhhccCCCccccCCChhhhh-hCCCC-CChhHHHHHHHhhc
Q 025331 194 YYARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALR-DVRIP-PGPRLLILDHIQSF 252 (254)
Q Consensus 194 ~Ya~~~~~l~~Lgl~~y~~~f~~e~~~~~~l~~~~~~~Lk-~~giP-~gpr~~il~~~~~~ 252 (254)
.-..+...|+.+||+.|..+|.+-.+|-.+|..+|++||+ |+||- ++-||||+..|++.
T Consensus 19 ~~e~V~~WLe~~GL~~Y~~~f~~n~~dG~~Ll~lt~~dLe~eLGI~nplHRkKL~laI~el 79 (265)
T 3tad_C 19 TKEQVCSWLAEQGLGSYLSSGKHWIISGQTLLQASQQDLEKELGIKHSLHRKKLQLALQAL 79 (265)
T ss_dssp CHHHHHHHHHHTTCCTTHHHHTTTCSCSHHHHHSCHHHHHHHTCCCSHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHCHHHHHHHHHHhCCchHHHHhCCHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 4457889999999999999999999999999999999995 99995 59999999999754
No 47
>2dkz_A Hypothetical protein LOC64762; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.83 E-value=0.00058 Score=51.99 Aligned_cols=58 Identities=19% Similarity=0.193 Sum_probs=52.1
Q ss_pred HHHHHHHHHhhcCchhh-HHHHhhccCCCccccCCChhhhh-hCCCCCChhHHHHHHHhh
Q 025331 194 YYARTRGMLDKLGLQNY-TKNFKRGLLTDSTLPLLTDSALR-DVRIPPGPRLLILDHIQS 251 (254)
Q Consensus 194 ~Ya~~~~~l~~Lgl~~y-~~~f~~e~~~~~~l~~~~~~~Lk-~~giP~gpr~~il~~~~~ 251 (254)
....+...|..+||++| ...|+.|.||=+-|..|+|++|+ |+|+..=-++||+++|+-
T Consensus 19 Sv~EVs~~Lr~igL~e~vv~~F~~e~IDG~lL~~L~ee~L~edf~ls~Lq~kKi~~fI~G 78 (84)
T 2dkz_A 19 SIEEVSKSLRFIGLSEDVISFFVTEKIDGNLLVQLTEEILSEDFKLSKLQVKKIMQFING 78 (84)
T ss_dssp CHHHHHHHGGGTCCCHHHHHHHHTTTCCHHHHHHCCHHHHHHTSCCCHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHcCCcHHHHHHHHHHccchHHHHhCCHHHHHhhcCCCHHHHHHHHHHHhc
Confidence 36778899999999975 79999999999999999999995 599988889999999963
No 48
>1dxs_A P53-like transcription factor; P73 SAM-like domain, gene regulation, P53 P63 homologue, sterIle alpha motif, tumour supressor; 2.54A {Homo sapiens} SCOP: a.60.1.2 PDB: 1cok_A
Probab=95.35 E-value=0.011 Score=44.65 Aligned_cols=56 Identities=29% Similarity=0.354 Sum_probs=48.4
Q ss_pred HHHHHHhhcCchhhHHHHh-hccCCCccccCCChhhhhhCCCCCChhHHHHHHHhhc
Q 025331 197 RTRGMLDKLGLQNYTKNFK-RGLLTDSTLPLLTDSALRDVRIPPGPRLLILDHIQSF 252 (254)
Q Consensus 197 ~~~~~l~~Lgl~~y~~~f~-~e~~~~~~l~~~~~~~Lk~~giP~gpr~~il~~~~~~ 252 (254)
++..+|.+|||+.|.++|. ++..++--|--+|-+||..|+||-.-|-||-.-+..+
T Consensus 8 Sv~s~Lt~LGc~~~Id~F~~qgl~~i~qL~~~~ledL~~mkIpe~~R~kIWk~l~e~ 64 (80)
T 1dxs_A 8 SLVSFLTGLGCPNCIEYFTSQGLQSIYHLQNLTIEDLGALKIPEQYRMTIWRGLQDL 64 (80)
T ss_dssp CHHHHHHHTTCTTSHHHHHTTTCCCHHHHHTCCHHHHHHTTCCTTTHHHHHHHHHHC
T ss_pred cHHHHHHhcCchHHHHHHHHcCcccchhhccCCHHHHHhCCCCHHHHHHHHhhHHHh
Confidence 5789999999999999975 5667788899999999999999999999997666543
No 49
>2l5y_A Stromal interaction molecule 2; EF-hand, SAM domain, store OPE calcium entry, signaling protein; NMR {Homo sapiens}
Probab=95.24 E-value=0.011 Score=49.40 Aligned_cols=51 Identities=24% Similarity=0.354 Sum_probs=43.9
Q ss_pred HHHHHHHhh-cCchhhHHHHhhccCCCccccCCChhh----hhhCCC-CCChhHHHH
Q 025331 196 ARTRGMLDK-LGLQNYTKNFKRGLLTDSTLPLLTDSA----LRDVRI-PPGPRLLIL 246 (254)
Q Consensus 196 a~~~~~l~~-Lgl~~y~~~f~~e~~~~~~l~~~~~~~----Lk~~gi-P~gpr~~il 246 (254)
..+.+.|.. ++|++|...|++-.||=.+||.|++++ +.++|| +++-|-||.
T Consensus 84 edV~~WL~~~v~LpqY~~~Fr~~~IdG~~LprL~~~~~~~L~~~LGI~~~~hR~Kl~ 140 (150)
T 2l5y_A 84 EDTLQWLIEFVELPQYEKNFRDNNVKGTTLPRIAVHEPSFMISQLKISDRSHRQKLQ 140 (150)
T ss_dssp HHHHHHHHHHTCCTTSHHHHHHHHCSSSTTTTCCSSSCCSTTTTSSCCCHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHcCCCHHHhhhhhhcchHHHHHHhCCCCHHHHHHHH
Confidence 345667755 699999999999999999999999976 569999 779999987
No 50
>3tac_B Liprin-alpha-2; transferase-protein binding complex; 2.20A {Homo sapiens} PDB: 3tad_A
Probab=94.55 E-value=0.023 Score=52.92 Aligned_cols=58 Identities=22% Similarity=0.368 Sum_probs=51.5
Q ss_pred HHHHHHHHhh-cCchh-hHHHHhhccCCCccccCCChhhh-hhCCC-CCChhHHHHHHHhhc
Q 025331 195 YARTRGMLDK-LGLQN-YTKNFKRGLLTDSTLPLLTDSAL-RDVRI-PPGPRLLILDHIQSF 252 (254)
Q Consensus 195 Ya~~~~~l~~-Lgl~~-y~~~f~~e~~~~~~l~~~~~~~L-k~~gi-P~gpr~~il~~~~~~ 252 (254)
-.++-..|+. +|++. |+..|+.-..|-..|..+||+|| ||+|| .++.||||+..|++.
T Consensus 41 ~~~V~aWLe~~iGmp~~Yv~~~r~nvkSG~~Ll~LSd~dLekeLGI~nPLHRKKL~LAIqel 102 (334)
T 3tac_B 41 GPTVVAWLELWLGMPAWYVAACRANVKSGAIMSALSDTEIQREIGISNPLHRLKLRLAIQEM 102 (334)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHCCSHHHHHTCCHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhcChHHHHHHHHHHccchHHHHhCCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 3467888988 89998 99999999999999999999999 59998 469999999988764
No 51
>2k60_A Protein (stromal interaction molecule 1); EF-hand, SAM domain, EF-SAM, STIM1, store operated calcium entry regulator, SOCE; NMR {Homo sapiens}
Probab=93.94 E-value=0.012 Score=49.14 Aligned_cols=50 Identities=16% Similarity=0.234 Sum_probs=42.3
Q ss_pred HHHHH-hhcCchhhHHHHhhccCCCccccCCChhh---h-hhCCC-CCChhHHHHH
Q 025331 198 TRGML-DKLGLQNYTKNFKRGLLTDSTLPLLTDSA---L-RDVRI-PPGPRLLILD 247 (254)
Q Consensus 198 ~~~~l-~~Lgl~~y~~~f~~e~~~~~~l~~~~~~~---L-k~~gi-P~gpr~~il~ 247 (254)
+...| ...+|++|...|++-.||=.+||.|++++ | .++|| +++-|.||-.
T Consensus 86 V~~WL~~~v~LpqY~~~Fr~~~I~G~~LprLa~~~~~~L~~~LgI~~~~hRqKl~l 141 (150)
T 2k60_A 86 VVQWLITYVELPQYEETFRKLQLSGHAMPRLAVTNTTMTGTVLKMTDRSHRQKLQL 141 (150)
T ss_dssp HHHHHHHHHCCTTHHHHHHHHCCSTTHHHHHSSCHHHHCSSCSCSCHHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHHHcCCCHHHHHhhccccHHHHHHhcCCCCHHHHHHHHH
Confidence 45556 55699999999999999999999999986 4 89999 6788888763
No 52
>3tac_B Liprin-alpha-2; transferase-protein binding complex; 2.20A {Homo sapiens} PDB: 3tad_A
Probab=93.75 E-value=0.033 Score=51.86 Aligned_cols=53 Identities=25% Similarity=0.266 Sum_probs=48.1
Q ss_pred HHHHHhhcCchhhHHHHhhccCCCccccCCChhhh-hhCCCC-CChhHHHHHHHh
Q 025331 198 TRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSAL-RDVRIP-PGPRLLILDHIQ 250 (254)
Q Consensus 198 ~~~~l~~Lgl~~y~~~f~~e~~~~~~l~~~~~~~L-k~~giP-~gpr~~il~~~~ 250 (254)
....|..+||.+|...|..-.||-..|.++|++|| .++||- ..+|++|+.-|+
T Consensus 166 ~~~WL~dIGLpQY~~~F~~~~VDgR~L~~Lt~~DL~~~LgIt~~~Hr~sI~~gI~ 220 (334)
T 3tac_B 166 GNEWLPSLGLPQYRSYFMECLVDARMLDHLTKKDLRVHLKMVDSFHRTSLQYGIM 220 (334)
T ss_dssp HHTHHHHTTCGGGHHHHHHTTCCHHHHTTCCHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred hhhhccccChHHhHHHHHhcCcchhhhhhccHHHHHhccCCCcHHHHHHHHHHHH
Confidence 34899999999999999999999999999999999 799994 479999988775
No 53
>2eap_A Lymphocyte cytosolic protein 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.98 E-value=0.07 Score=40.96 Aligned_cols=49 Identities=18% Similarity=0.290 Sum_probs=40.2
Q ss_pred HHHHHHhhcCchhhHHHH-hhccCCCccccCCChhhhhhCCCCCChhHHHHHHH
Q 025331 197 RTRGMLDKLGLQNYTKNF-KRGLLTDSTLPLLTDSALRDVRIPPGPRLLILDHI 249 (254)
Q Consensus 197 ~~~~~l~~Lgl~~y~~~f-~~e~~~~~~l~~~~~~~Lk~~giP~gpr~~il~~~ 249 (254)
.+...|+++|+.+ +..| ++-.||=.+|..|||+|||. ||=+|.-|+.-|
T Consensus 26 ~VadWLkk~g~~~-cd~lv~Kh~IDG~~lL~LtE~Dlrk---~Pkl~~p~~~k~ 75 (90)
T 2eap_A 26 SLADYFKKLNYKD-CEKAVKKYHIDGARFLNLTENDIQK---FPKLRVPILSKL 75 (90)
T ss_dssp THHHHHHHTTCHH-HHHHHHHTTCCHHHHHTCCHHHHTT---SCTTTHHHHHHH
T ss_pred HHHHHHHHcCCch-HHHHHHHhccCchhhhcccHHHhcc---CCccccHHHHHH
Confidence 4788999999999 5655 57779999999999999998 888886555443
No 54
>1uqv_A STE50 protein; SAM, sterIle alpha motif, helical, protein-protein interaction domain, growth arrest, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB: 1z1v_A
Probab=91.23 E-value=0.094 Score=39.91 Aligned_cols=54 Identities=11% Similarity=0.063 Sum_probs=46.0
Q ss_pred HHHHH-hhcCchh---hHHHHhhccCCCccccCCChhhhhhCCCC-CChhHHHHHHHhh
Q 025331 198 TRGML-DKLGLQN---YTKNFKRGLLTDSTLPLLTDSALRDVRIP-PGPRLLILDHIQS 251 (254)
Q Consensus 198 ~~~~l-~~Lgl~~---y~~~f~~e~~~~~~l~~~~~~~Lk~~giP-~gpr~~il~~~~~ 251 (254)
+-+.+ .+||++. .+.+|..-.|+=+.|+-++-+||||++|- +|-|.++-+.|.+
T Consensus 17 V~~W~~~~lg~~d~d~~~~~f~~ndItG~vL~eL~leDlKEL~i~s~~~r~~lk~~In~ 75 (85)
T 1uqv_A 17 VITWCISTLEVEETDPLCQRLRENDIVGDLLPELCLQDCQDLCDGDLNKAIKFKILINK 75 (85)
T ss_dssp HHHHHHHHHSSCTTSTHHHHHHHSCCCGGGHHHHHHHHHHHTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCccHHHHHHHHcCCchhhHHHcCHHHHHHhCchHHHHHHHHHHHHHH
Confidence 56666 8899987 68889999999999999999999999996 4878888766654
No 55
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=54.58 E-value=2.4 Score=31.79 Aligned_cols=43 Identities=28% Similarity=0.374 Sum_probs=32.1
Q ss_pred hhHHHHHHHHH-hhcCc-hhhHHHHhhccCCCccccCCChhhhhhC
Q 025331 192 DVYYARTRGML-DKLGL-QNYTKNFKRGLLTDSTLPLLTDSALRDV 235 (254)
Q Consensus 192 d~~Ya~~~~~l-~~Lgl-~~y~~~f~~e~~~~~~l~~~~~~~Lk~~ 235 (254)
+..|..+..+| ++|.+ .+......|.+ +...+++++|+||+++
T Consensus 23 ~~~y~~L~~~l~~kL~l~~~~~~LsYk~~-~s~~~vi~~d~dl~~a 67 (83)
T 1oey_A 23 GLPYSQVRDMVSKKLELRLEHTKLSYRPR-DSNELVPLSEDSMKDA 67 (83)
T ss_dssp TCCHHHHHHHHHHHTTCCGGGCCEEECCT-TCSSCEECCTTTHHHH
T ss_pred CCCHHHHHHHHHHHhCCCcceeEEEeeCC-CCCCeeccChHHHHHH
Confidence 44677787776 78888 56666666666 6777779999999874
No 56
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=52.30 E-value=3.6 Score=34.37 Aligned_cols=44 Identities=14% Similarity=0.133 Sum_probs=38.3
Q ss_pred hHHHHHHHHHhhcCchhhHHHHhhccCCCccccCCChhhhhhCCCC
Q 025331 193 VYYARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIP 238 (254)
Q Consensus 193 ~~Ya~~~~~l~~Lgl~~y~~~f~~e~~~~~~l~~~~~~~Lk~~giP 238 (254)
..++.+-..|+++||..|+.+ +|++|-++|..+.|..|.-.||-
T Consensus 107 ~~~~~vle~Lk~~gl~~~Ir~--keevnK~al~~~~~~~~~~~Gv~ 150 (171)
T 2p2u_A 107 ITKDMTLERLRQFGISEGIRI--KEDVNKEAMQGWPDERLEMVGLK 150 (171)
T ss_dssp CCHHHHHHHHHHTTCCTTCCC--CCCCCHHHHTTSCHHHHHHTTCC
T ss_pred CCHHHHHHHHHHCCcHhheee--ccccCHHHHhcCcccceeeCCeE
Confidence 357888999999999988775 69999999999999999888874
No 57
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.50 E-value=16 Score=25.33 Aligned_cols=23 Identities=26% Similarity=0.595 Sum_probs=20.5
Q ss_pred hhhhhCCCC-CChhHHHHHHHhhc
Q 025331 230 SALRDVRIP-PGPRLLILDHIQSF 252 (254)
Q Consensus 230 ~~Lk~~giP-~gpr~~il~~~~~~ 252 (254)
..|.|+|-| +|-|-.+++.++.|
T Consensus 18 aKLaE~GAPi~g~REElvdRLk~Y 41 (58)
T 2do5_A 18 AKLAEIGAPIQGNREELVERLQSY 41 (58)
T ss_dssp HHHHHHTCCCCSCHHHHHHHHHHH
T ss_pred HHHHHhCCcccccHHHHHHHHHHH
Confidence 467899999 99999999999876
No 58
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=31.17 E-value=45 Score=19.56 Aligned_cols=18 Identities=28% Similarity=0.554 Sum_probs=13.0
Q ss_pred hhHHHHHHHHHHhHHHHH
Q 025331 17 KAIKDVQFKLKELENGYK 34 (254)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~ 34 (254)
+.++|+|+|++.|...++
T Consensus 8 keledlqerlrklrkklr 25 (27)
T 3twe_A 8 KELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 457888888888776654
No 59
>2lpe_A Kinase suppressor of RAS 1; SAM domain, CC-SAM, coiled-coil, signaling protein, scaffold protein; NMR {Mus musculus}
Probab=30.92 E-value=5.1 Score=33.23 Aligned_cols=45 Identities=16% Similarity=0.068 Sum_probs=38.2
Q ss_pred chhhHHHHHHHHHhhcCchhhHHHHhhccCCCccccCCChhhhhh
Q 025331 190 ADDVYYARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRD 234 (254)
Q Consensus 190 ~~d~~Ya~~~~~l~~Lgl~~y~~~f~~e~~~~~~l~~~~~~~Lk~ 234 (254)
++-+.|.+++.+|.-.||.+-...==...+++++|.-|||+++|+
T Consensus 78 ~~l~~yP~l~~WLrvVgl~~esiq~i~~~~TLe~LLemsd~evr~ 122 (149)
T 2lpe_A 78 AELNSYPRFSDWLYIFNVRPEVVQEIPQELTLDALLEMDEAKAKE 122 (149)
T ss_dssp TTGGGCSCSTTTHHHHTCCHHHHTTSCTTCSHHHHTTSCHHHHHH
T ss_pred hhhhcCchHHHHHHHhccCHHHHHHhhhhccHHHHHhcCHHHHHH
Confidence 456789999999999999876655337789999999999999988
No 60
>1miw_A TRNA CCA-adding enzyme; tRNA nucleotidyltransferase, translation, transferase; HET: ATP; 3.00A {Geobacillus stearothermophilus} SCOP: a.173.1.1 d.218.1.4 PDB: 1miv_A* 1miy_A*
Probab=24.49 E-value=36 Score=31.61 Aligned_cols=27 Identities=26% Similarity=0.260 Sum_probs=21.9
Q ss_pred cCCChhhhh-hCCCCCChhH-HHHHHHhh
Q 025331 225 PLLTDSALR-DVRIPPGPRL-LILDHIQS 251 (254)
Q Consensus 225 ~~~~~~~Lk-~~giP~gpr~-~il~~~~~ 251 (254)
+.+|=+||. .+|||+||.. +||+++..
T Consensus 347 ~~i~G~dL~~~lG~~pGp~iG~~L~~l~~ 375 (404)
T 1miw_A 347 LAVNGKDVIEWVGKPAGPWVKEALDAIWR 375 (404)
T ss_dssp CSSCHHHHHHHHTCCSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHcCCCCcHHHHHHHHHHHH
Confidence 368899999 5999999996 67777754
No 61
>2lbg_A Major prion protein; conserved hydrophobic region, membrane protei; NMR {Homo sapiens}
Probab=23.14 E-value=91 Score=18.63 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 025331 49 VTATTAINGAAIGAFLGVMT 68 (254)
Q Consensus 49 ~T~~gav~Gg~lG~~~G~~~ 68 (254)
..+.|++.|+.-|+++|..+
T Consensus 6 a~AAGaVvGglGgy~lg~~m 25 (27)
T 2lbg_A 6 AAAAGAVVGGLGGYMLGSAM 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhHHHHHHHHh
Confidence 45566666666666666543
No 62
>3h38_A TRNA nucleotidyl transferase-related protein; transferase/RNA, nucleotide-binding, RNA-binding; 2.37A {Thermotoga maritima} PDB: 3h37_A 3h39_A* 3h3a_A*
Probab=22.67 E-value=35 Score=32.37 Aligned_cols=27 Identities=19% Similarity=0.180 Sum_probs=21.9
Q ss_pred cC-CChhhhhhCCCCCChhH-HHHHHHhh
Q 025331 225 PL-LTDSALRDVRIPPGPRL-LILDHIQS 251 (254)
Q Consensus 225 ~~-~~~~~Lk~~giP~gpr~-~il~~~~~ 251 (254)
++ +|=.||+++|++|||.. +||+.+..
T Consensus 375 ~~~i~G~DLi~~G~~PGP~~G~iL~~l~~ 403 (441)
T 3h38_A 375 LEKINGEYLIRKGITSGKIIGEVLEKILM 403 (441)
T ss_dssp SCSSCCHHHHTTTCCCSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHcCCCCCcHHHHHHHHHHH
Confidence 44 88999999999999985 57777653
No 63
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=20.32 E-value=1e+02 Score=27.83 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=26.5
Q ss_pred hHHHHHHHHHhhcCchhhHHHHhhccCCCccccCCChhhhhh
Q 025331 193 VYYARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRD 234 (254)
Q Consensus 193 ~~Ya~~~~~l~~Lgl~~y~~~f~~e~~~~~~l~~~~~~~Lk~ 234 (254)
+.+.+++.+++++||+.-++-+ .|+.+.++.+.+..+++
T Consensus 322 ~~~~~i~~l~~~lglp~~l~~~---gi~~~~~~~~a~~a~~~ 360 (386)
T 1rrm_A 322 AAVEAVFALNRDVGIPPHLRDV---GVRKEDIPALAQAALDD 360 (386)
T ss_dssp HHHHHHHHHHHHTTCCSSGGGG---TCCGGGHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCCCCHHhc---CCCHHHHHHHHHHHHhc
Confidence 4578899999999998544332 35556666666666665
No 64
>1jei_A Emerin; membrane protein; NMR {Synthetic} SCOP: a.140.1.1 PDB: 2odc_I 2odg_C
Probab=20.10 E-value=34 Score=23.55 Aligned_cols=17 Identities=47% Similarity=0.790 Sum_probs=12.6
Q ss_pred cCCChhh----hhhCCCCCCh
Q 025331 225 PLLTDSA----LRDVRIPPGP 241 (254)
Q Consensus 225 ~~~~~~~----Lk~~giP~gp 241 (254)
..++|++ |+..||++||
T Consensus 4 ~~Lsd~eLr~~L~~~G~~~GP 24 (53)
T 1jei_A 4 ADLSDTELTTLLRRYNIPHGP 24 (53)
T ss_dssp TTCCHHHHHHHHSSSCCSCCC
T ss_pred HHcCHHHHHHHHHHhCCCCCC
Confidence 4456655 5679999999
Done!