BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025332
(254 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q949S9|SPF27_ARATH Pre-mRNA-splicing factor SPF27 homolog OS=Arabidopsis thaliana
GN=MOS4 PE=1 SV=1
Length = 253
Score = 351 bits (901), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 170/244 (69%), Positives = 203/244 (83%), Gaps = 5/244 (2%)
Query: 5 SNNNGDILMLEAPPDAARPW----NAEIIDALPYIDDDYADPRVKEEVDRMVEQEMRRSS 60
+ NNGD+LMLEA P+AARPW NAE+IDALPYIDDDY +P +K EVDR+VE+EMRRSS
Sbjct: 2 ATNNGDVLMLEATPEAARPWASAANAEVIDALPYIDDDYGNPLIKSEVDRLVEEEMRRSS 61
Query: 61 KKPSDFLKNLPPLSKFRFENHPMLAKEYERVRAGKPPAVLDT-TRYQLEILPANKRNDES 119
KKP+DFLK+LPPL KF F+N P+L KEYERVRAGKPP +D +RY+LE+ PANKRND++
Sbjct: 62 KKPADFLKDLPPLPKFDFKNCPVLGKEYERVRAGKPPVRIDFESRYKLEMPPANKRNDDA 121
Query: 120 AWKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIE 179
AWKQ LQK QR Q +LI LENLELMSK GPE+WRQ+N RLE L MQRLAQEQNE+IE
Sbjct: 122 AWKQYLQKNQRSLQQKLIELENLELMSKLGPELWRQNNHRLEVFLTRMQRLAQEQNEEIE 181
Query: 180 AVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGWNLD 239
VNRERKYHQQ T+YELNALS +WR+LC KN+EIQ+ACA +E+ I+ +KEAAE GWNL+
Sbjct: 182 KVNRERKYHQQTTSYELNALSQEWRQLCVKNMEIQSACAMLETQIDSFKKEAAERGWNLE 241
Query: 240 IDME 243
+E
Sbjct: 242 EKLE 245
>sp|Q6PBE2|SPF27_XENTR Pre-mRNA-splicing factor SPF27 OS=Xenopus tropicalis GN=bcas2 PE=2
SV=1
Length = 223
Score = 108 bits (271), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 118/212 (55%), Gaps = 2/212 (0%)
Query: 28 IIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFENHPMLAKE 87
++DALPY D Y V+E +VE+E RR + ++L LP FE M E
Sbjct: 12 VVDALPYFDQGYDAQGVREAAAALVEEETRRY-RPTKNYLSYLPTPDYSAFETEIM-RNE 69
Query: 88 YERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRLENLELMSK 147
+ER+ + +P +L RY+L + +RND +AW++ + + +HQ +R+ENLELMS+
Sbjct: 70 FERLSSRQPLELLSMKRYELPAPLSGQRNDITAWQECVNNSMAQLEHQAVRIENLELMSQ 129
Query: 148 HGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELC 207
HG W+ +N+ L ++ Q+ Q+ +KI+ +N +RK Q L + + W L
Sbjct: 130 HGCNAWKVYNENLLHMIDCAQKDLQKLRKKIQDLNWQRKNSQLTAGARLREMESTWVSLV 189
Query: 208 AKNIEIQAACANIESHIEELRKEAAESGWNLD 239
+KN EI+ A +E+ + +L++ + E+ N++
Sbjct: 190 SKNYEIERAIVQMENEVYQLKERSGENKENIE 221
>sp|Q9D287|SPF27_MOUSE Pre-mRNA-splicing factor SPF27 OS=Mus musculus GN=Bcas2 PE=2 SV=1
Length = 225
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 117/209 (55%), Gaps = 6/209 (2%)
Query: 28 IIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNL--PPLSKFRFENHPMLA 85
++DALPY D Y P V+E +VE+E RR + ++L L P S F + ++
Sbjct: 12 VVDALPYFDQGYEAPGVREAAAALVEEETRRY-RPTKNYLSYLTAPDYSAFETD---IMR 67
Query: 86 KEYERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRLENLELM 145
E+ER+ A +P +L RY+L + ++ND +AW++ + + +HQ +R+ENLELM
Sbjct: 68 NEFERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVRIENLELM 127
Query: 146 SKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRE 205
S+HG W+ +N+ L ++ Q+ Q+ + I+ +N +RK Q +L + + W
Sbjct: 128 SQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLREMESNWVS 187
Query: 206 LCAKNIEIQAACANIESHIEELRKEAAES 234
L +KN EI+ +E+ I +++++ E+
Sbjct: 188 LVSKNYEIERTIVQLENEIYQIKQQHGEA 216
>sp|O75934|SPF27_HUMAN Pre-mRNA-splicing factor SPF27 OS=Homo sapiens GN=BCAS2 PE=1 SV=1
Length = 225
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 117/209 (55%), Gaps = 6/209 (2%)
Query: 28 IIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNL--PPLSKFRFENHPMLA 85
++DALPY D Y P V+E +VE+E RR + ++L L P S F + ++
Sbjct: 12 VVDALPYFDQGYEAPGVREAAAALVEEETRRY-RPTKNYLSYLTAPDYSAFETD---IMR 67
Query: 86 KEYERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRLENLELM 145
E+ER+ A +P +L RY+L + ++ND +AW++ + + +HQ +R+ENLELM
Sbjct: 68 NEFERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVRIENLELM 127
Query: 146 SKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRE 205
S+HG W+ +N+ L ++ Q+ Q+ + I+ +N +RK Q +L + + W
Sbjct: 128 SQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLREMESNWVS 187
Query: 206 LCAKNIEIQAACANIESHIEELRKEAAES 234
L +KN EI+ +E+ I +++++ E+
Sbjct: 188 LVSKNYEIERTIVQLENEIYQIKQQHGEA 216
>sp|Q5RAX7|SPF27_PONAB Pre-mRNA-splicing factor SPF27 OS=Pongo abelii GN=BCAS2 PE=2 SV=1
Length = 226
Score = 105 bits (263), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 118/210 (56%), Gaps = 7/210 (3%)
Query: 28 IIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNL--PPLSKFRFENHPMLA 85
++DALPY D Y P V+E +VE+E RR + ++L L P S F + ++
Sbjct: 12 VVDALPYFDQGYEAPGVREAAAALVEEETRRY-RPTKNYLSYLTAPDYSAFETD---IMR 67
Query: 86 KEYERVRAGKPPAVLDTTRYQLEILPAN-KRNDESAWKQALQKAQRLSQHQLIRLENLEL 144
E+ER+ A +P +L RY+L P+ K+ND +AW++ + + +HQ +R+ENLEL
Sbjct: 68 NEFERLAARQPIELLSMKRYELPAPPSGQKKNDITAWQECVNNSMAQLEHQAVRIENLEL 127
Query: 145 MSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWR 204
MS+HG W+ +N+ L ++ Q+ Q+ + I+ +N +RK Q +L + + W
Sbjct: 128 MSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLREMESNWV 187
Query: 205 ELCAKNIEIQAACANIESHIEELRKEAAES 234
L +KN EI+ +E+ I +++++ E+
Sbjct: 188 SLVSKNYEIERTIVQLENEIYQIKQQHGEA 217
>sp|Q5RKQ0|SPF27_DANRE Pre-mRNA-splicing factor SPF27 OS=Danio rerio GN=bcas2 PE=2 SV=1
Length = 225
Score = 101 bits (251), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 111/206 (53%), Gaps = 2/206 (0%)
Query: 28 IIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFENHPMLAKE 87
+DALPY D Y V+E +VE+E RR + ++L LP FE ++ E
Sbjct: 12 FVDALPYFDQGYDATGVREAAAALVEEETRRY-RPTKNYLSYLPTPDFSAFETE-IMRNE 69
Query: 88 YERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRLENLELMSK 147
+ER+ A +P +L RY+L + ++ND +AW+ + + +HQ +R+ENLELM++
Sbjct: 70 FERLAARQPMELLSMKRYELPAPSSGQKNDMTAWQDCVNNSMAQLEHQAVRIENLELMAQ 129
Query: 148 HGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELC 207
+G W+ N L ++ Q+ Q ++I+ +N +RK Q +L L + W L
Sbjct: 130 YGTNAWKMSNDNLALMIENSQKELQNVRKEIQDLNWQRKNDQLAGGAKLRELESNWVSLV 189
Query: 208 AKNIEIQAACANIESHIEELRKEAAE 233
+KN EI+ A +E+ + +++++ +
Sbjct: 190 SKNYEIERAIVQLENEVAQMKQQQGD 215
>sp|Q54SG7|SPF27_DICDI Pre-mRNA-splicing factor spf27 OS=Dictyostelium discoideum GN=spf27
PE=3 SV=2
Length = 226
Score = 94.0 bits (232), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 108/202 (53%), Gaps = 5/202 (2%)
Query: 26 AEIIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFENHPMLA 85
AE ID+LPY+DD + +E +++++ EM S+ P D+L LP + N L
Sbjct: 8 AENIDSLPYVDDS-VNENEQELINKLISDEM--STFTPPDYLAQLPSFIDIDYNNFQFLE 64
Query: 86 KEYERVRAGKPPAVLDTTRYQLE--ILPANKRNDESAWKQALQKAQRLSQHQLIRLENLE 143
+++R+ + D RY++E ++ +E W +L A+ +HQ IR NLE
Sbjct: 65 NDFKRMEKEEKMKEFDIGRYKVEPTTTMIKQQLNEKQWNDSLNNARSQLEHQDIRKINLE 124
Query: 144 LMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQW 203
L+ ++G W+ + LE L +++ ++ ++IE +N +RK Q+ T ++ ++
Sbjct: 125 LLQRYGGNSWKLYLSDLEILQKTLKKQLDQKKQQIEEINIQRKLSQEQTFEKIQQHDKKF 184
Query: 204 RELCAKNIEIQAACANIESHIE 225
EL KN EI++AC +IE IE
Sbjct: 185 LELVYKNTEIESACKSIELEIE 206
>sp|Q9USV3|SPF27_SCHPO Pre-mRNA-splicing factor cwf7 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cwf7 PE=1 SV=1
Length = 187
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 95/198 (47%), Gaps = 31/198 (15%)
Query: 29 IDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKF-------RFENH 81
+D+LPY + Y + + ++VE+E++RS +K KF R EN
Sbjct: 7 LDSLPYFESTYNEED-RSAAAQIVEEELKRSG---GLLIKQEEQKKKFQSHRLSDRLENA 62
Query: 82 PMLAKEYERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRLEN 141
+ A + G+ A +D RY +++ P R ++L ++ + ++Q R +N
Sbjct: 63 IVAAGK------GEKLAAIDVQRY-IQLKPPGTR-------ESLLQSAVVWEYQKSRNDN 108
Query: 142 LELMSKHGPEVWRQHNQRLEALLLGMQRLAQE--QNEKI-EAVNRERKYHQQNTAYELNA 198
L L+ KHG + + + LEAL + ++ L +E +K+ + NR+RK++Q L
Sbjct: 109 LYLLEKHGEKAF---DSSLEALEVQLELLEKELVNTKKLSQGCNRKRKHYQMEVGARLAE 165
Query: 199 LSTQWRELCAKNIEIQAA 216
++ +L +I+ + A
Sbjct: 166 AEVKFGQLLQSSIQCRVA 183
>sp|Q28559|ACACA_SHEEP Acetyl-CoA carboxylase 1 OS=Ovis aries GN=ACACA PE=2 SV=1
Length = 2346
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 89 ERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRLENLELM 145
E+V+A +P +L L + + RN S + +L++ Q LS H L+ ++EL+
Sbjct: 619 EKVQAERPDTMLGVVCGALHVADVSLRNSISNFLHSLERGQVLSAHTLLNTVDVELI 675
>sp|P11497|ACACA_RAT Acetyl-CoA carboxylase 1 OS=Rattus norvegicus GN=Acaca PE=1 SV=1
Length = 2345
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 89 ERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRLENLELM 145
E+V+A +P +L L + N RN S + +L++ Q L H L+ ++EL+
Sbjct: 618 EKVQAERPDTMLGVVCGALHVADVNLRNSISNFLHSLERGQVLPAHTLLNTVDVELI 674
>sp|Q9XZ08|EXT3_DROME Exostosin-3 OS=Drosophila melanogaster GN=botv PE=1 SV=1
Length = 972
Score = 32.0 bits (71), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 57 RRSSKKPSDFLKNLPPLSKFRFENHPMLAKEYERVRAGKPPAVLDTTRYQLEILPANKRN 116
RR K S F LPPL+ R + MLA+ YE +R+G P +L + LP +
Sbjct: 472 RRQLLKDSTFSLILPPLNG-RVSSTLMLARIYEALRSGAVPVILGADELR---LPYAETV 527
Query: 117 DESAWKQALQKAQRLSQHQLIR 138
D L KA+ H L+R
Sbjct: 528 DWRRTALLLPKARITELHFLLR 549
>sp|E9Q414|APOB_MOUSE Apolipoprotein B-100 OS=Mus musculus GN=Apob PE=1 SV=1
Length = 4505
Score = 31.2 bits (69), Expect = 6.8, Method: Composition-based stats.
Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 8/112 (7%)
Query: 24 WNAEIIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFENHPM 83
WN E+ +++A + + E M+ + S F + E P
Sbjct: 3537 WNVEV-------GENFAGEATLQRIYTTWEHNMKNHLQVYSYFFTKGKQTCRATLELSPW 3589
Query: 84 LAKEYERVRAGKPPAVLDTTRYQLE-ILPANKRNDESAWKQALQKAQRLSQH 134
+V + ++LD + E IL AN +N + +WK +Q R+ QH
Sbjct: 3590 TMSTLLQVHVSQLSSLLDLHHFDQEVILKANTKNQKISWKGGVQVESRVLQH 3641
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.129 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,212,541
Number of Sequences: 539616
Number of extensions: 3666350
Number of successful extensions: 11438
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 169
Number of HSP's that attempted gapping in prelim test: 11266
Number of HSP's gapped (non-prelim): 323
length of query: 254
length of database: 191,569,459
effective HSP length: 115
effective length of query: 139
effective length of database: 129,513,619
effective search space: 18002393041
effective search space used: 18002393041
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)