Query 025332
Match_columns 254
No_of_seqs 110 out of 198
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 04:47:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025332.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025332hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05700 BCAS2: Breast carcino 100.0 2.1E-62 4.6E-67 433.3 27.3 213 26-239 6-220 (221)
2 KOG3096 Spliceosome-associated 100.0 5.7E-59 1.2E-63 398.9 24.1 213 26-242 4-216 (225)
3 PRK10884 SH3 domain-containing 81.7 24 0.00052 31.2 10.9 9 92-100 51-59 (206)
4 PF15290 Syntaphilin: Golgi-lo 80.6 28 0.00061 32.5 11.1 77 117-229 55-131 (305)
5 KOG0972 Huntingtin interacting 73.3 77 0.0017 30.0 11.9 94 146-239 218-332 (384)
6 PF04156 IncA: IncA protein; 72.2 59 0.0013 27.5 12.9 20 119-138 84-103 (191)
7 PRK11637 AmiB activator; Provi 71.4 75 0.0016 30.7 12.2 33 157-189 42-74 (428)
8 TIGR02231 conserved hypothetic 70.3 87 0.0019 31.1 12.6 40 196-235 133-172 (525)
9 PRK10884 SH3 domain-containing 70.3 77 0.0017 28.0 12.8 11 125-135 95-105 (206)
10 PF11932 DUF3450: Protein of u 68.7 87 0.0019 28.0 11.9 46 156-201 71-116 (251)
11 PF08826 DMPK_coil: DMPK coile 66.7 45 0.00098 24.0 10.1 58 164-229 3-60 (61)
12 PF12128 DUF3584: Protein of u 62.6 2.5E+02 0.0054 31.1 18.5 83 150-232 376-459 (1201)
13 PF05149 Flagellar_rod: Parafl 59.4 1.5E+02 0.0034 27.6 12.4 66 160-229 11-80 (289)
14 PF05615 THOC7: Tho complex su 56.3 1.1E+02 0.0023 24.8 11.4 73 117-189 43-115 (139)
15 TIGR01843 type_I_hlyD type I s 56.0 1.8E+02 0.0038 27.2 15.2 19 87-105 61-79 (423)
16 PF10146 zf-C4H2: Zinc finger- 55.1 1.6E+02 0.0035 26.5 12.6 67 164-230 27-103 (230)
17 PHA02562 46 endonuclease subun 55.0 2.2E+02 0.0047 28.0 13.1 29 196-224 215-243 (562)
18 PHA01750 hypothetical protein 54.1 86 0.0019 23.1 8.7 23 160-182 33-55 (75)
19 PRK04778 septation ring format 53.8 2.5E+02 0.0054 28.3 14.1 110 119-230 71-180 (569)
20 PF14662 CCDC155: Coiled-coil 51.3 1.7E+02 0.0038 25.8 12.1 42 193-234 73-114 (193)
21 PF12325 TMF_TATA_bd: TATA ele 51.2 1.3E+02 0.0029 24.4 12.9 74 156-230 38-111 (120)
22 KOG1029 Endocytic adaptor prot 51.2 3.4E+02 0.0074 29.2 12.9 80 159-238 546-627 (1118)
23 PRK11637 AmiB activator; Provi 51.0 2.4E+02 0.0051 27.2 13.7 33 196-228 221-253 (428)
24 PRK03918 chromosome segregatio 50.8 3.2E+02 0.0068 28.6 18.1 66 121-187 160-225 (880)
25 PF08581 Tup_N: Tup N-terminal 50.8 1.1E+02 0.0023 23.1 11.0 28 208-235 46-77 (79)
26 PF05837 CENP-H: Centromere pr 49.3 72 0.0016 25.0 6.3 63 167-230 8-73 (106)
27 PRK13729 conjugal transfer pil 49.2 1.1E+02 0.0023 30.7 8.8 26 164-189 78-103 (475)
28 PHA02562 46 endonuclease subun 48.9 2.6E+02 0.0057 27.4 11.7 28 159-186 303-330 (562)
29 PRK10361 DNA recombination pro 48.7 2.9E+02 0.0064 27.6 14.4 59 143-201 121-179 (475)
30 PF06657 Cep57_MT_bd: Centroso 48.2 94 0.002 23.2 6.5 50 159-208 14-64 (79)
31 COG1566 EmrA Multidrug resista 47.9 1.8E+02 0.0038 27.9 9.9 39 89-143 73-111 (352)
32 PF09738 DUF2051: Double stran 45.9 2.6E+02 0.0057 26.2 14.7 99 137-241 82-180 (302)
33 KOG0933 Structural maintenance 45.8 4.6E+02 0.0099 29.0 13.3 48 186-233 877-924 (1174)
34 PF06160 EzrA: Septation ring 45.6 3.4E+02 0.0073 27.4 16.2 109 120-230 68-176 (560)
35 PRK09039 hypothetical protein; 43.8 2.9E+02 0.0062 26.2 11.3 10 220-229 142-151 (343)
36 COG2433 Uncharacterized conser 43.2 4E+02 0.0087 27.7 12.5 76 152-228 433-508 (652)
37 COG5185 HEC1 Protein involved 41.5 3.1E+02 0.0068 27.7 10.5 80 163-251 376-455 (622)
38 PF04111 APG6: Autophagy prote 40.8 1.3E+02 0.0028 28.2 7.7 71 156-230 51-121 (314)
39 PF06005 DUF904: Protein of un 40.1 1.5E+02 0.0033 21.8 6.7 32 199-230 23-54 (72)
40 TIGR01000 bacteriocin_acc bact 39.4 3.7E+02 0.008 26.1 13.6 23 211-233 239-261 (457)
41 KOG4571 Activating transcripti 38.7 1.3E+02 0.0027 28.3 7.1 31 199-229 253-283 (294)
42 KOG0804 Cytoplasmic Zn-finger 38.5 4.2E+02 0.0091 26.5 13.9 80 158-238 371-451 (493)
43 PF15066 CAGE1: Cancer-associa 37.5 4.4E+02 0.0096 26.5 11.2 75 160-234 388-472 (527)
44 PF00038 Filament: Intermediat 37.1 3.2E+02 0.0069 24.8 12.4 19 211-229 120-138 (312)
45 TIGR02168 SMC_prok_B chromosom 37.1 5.4E+02 0.012 27.4 12.6 26 9-37 23-48 (1179)
46 PRK04863 mukB cell division pr 36.7 7.1E+02 0.015 28.7 16.3 59 131-189 274-341 (1486)
47 PF13815 Dzip-like_N: Iguana/D 36.1 1.6E+02 0.0034 23.4 6.5 21 160-180 78-98 (118)
48 KOG0239 Kinesin (KAR3 subfamil 35.6 4.4E+02 0.0096 27.5 11.2 64 165-229 244-314 (670)
49 PF10224 DUF2205: Predicted co 35.1 2E+02 0.0043 21.8 8.2 53 179-231 8-60 (80)
50 PF12548 DUF3740: Sulfatase pr 35.0 70 0.0015 26.8 4.4 28 150-177 101-128 (145)
51 PF13851 GAS: Growth-arrest sp 35.0 3.1E+02 0.0067 23.9 15.3 98 132-229 16-128 (201)
52 PF07798 DUF1640: Protein of u 34.9 2.8E+02 0.0061 23.5 11.5 37 192-231 118-154 (177)
53 PF10398 DUF2443: Protein of u 34.9 76 0.0017 23.8 4.1 24 163-186 51-74 (79)
54 PF15450 DUF4631: Domain of un 34.1 5.2E+02 0.011 26.3 16.2 98 120-217 298-406 (531)
55 KOG0161 Myosin class II heavy 34.1 6.7E+02 0.015 29.7 13.0 48 151-198 953-1000(1930)
56 KOG0977 Nuclear envelope prote 33.7 3.7E+02 0.0081 27.4 10.0 44 163-206 86-132 (546)
57 PF15136 UPF0449: Uncharacteri 33.6 2.4E+02 0.0052 22.2 7.0 9 66-74 6-14 (97)
58 smart00338 BRLZ basic region l 33.3 1.7E+02 0.0037 20.4 6.1 36 195-230 27-62 (65)
59 PF10498 IFT57: Intra-flagella 32.6 4.6E+02 0.0099 25.2 12.6 118 115-242 190-328 (359)
60 PF04880 NUDE_C: NUDE protein, 32.5 73 0.0016 27.4 4.2 41 196-236 2-45 (166)
61 PF14389 Lzipper-MIP1: Leucine 31.8 2.1E+02 0.0045 21.7 6.2 35 198-232 51-85 (88)
62 KOG1760 Molecular chaperone Pr 31.6 2.7E+02 0.0059 23.0 7.1 63 119-181 33-107 (131)
63 PF12128 DUF3584: Protein of u 30.8 7.8E+02 0.017 27.4 17.9 52 157-208 673-728 (1201)
64 PF09726 Macoilin: Transmembra 30.7 6.5E+02 0.014 26.4 16.6 107 120-230 457-581 (697)
65 KOG4674 Uncharacterized conser 30.6 9.6E+02 0.021 28.3 17.0 83 148-230 1285-1382(1822)
66 PF04642 DUF601: Protein of un 30.3 2.8E+02 0.0062 25.7 7.8 74 133-206 225-304 (311)
67 PF15030 DUF4527: Protein of u 30.0 4.5E+02 0.0097 24.3 9.5 49 160-212 42-90 (277)
68 PF03233 Cauli_AT: Aphid trans 30.0 1.6E+02 0.0036 25.2 5.9 51 130-181 111-161 (163)
69 PF10174 Cast: RIM-binding pro 29.1 7.3E+02 0.016 26.5 17.2 69 162-230 433-501 (775)
70 PF10498 IFT57: Intra-flagella 28.9 5.3E+02 0.011 24.8 18.3 23 210-232 330-352 (359)
71 COG2433 Uncharacterized conser 28.7 6.9E+02 0.015 26.0 11.9 23 157-179 445-467 (652)
72 PRK03918 chromosome segregatio 28.4 7E+02 0.015 26.0 14.4 31 196-226 661-691 (880)
73 KOG3119 Basic region leucine z 27.9 2.8E+02 0.0061 25.3 7.5 22 210-231 224-245 (269)
74 PF08898 DUF1843: Domain of un 27.4 1.5E+02 0.0032 20.8 4.3 36 194-229 17-52 (53)
75 PF09304 Cortex-I_coil: Cortex 27.3 3.3E+02 0.0071 21.8 11.8 31 150-180 32-62 (107)
76 KOG0980 Actin-binding protein 27.2 8.4E+02 0.018 26.6 16.6 65 119-187 420-484 (980)
77 KOG0161 Myosin class II heavy 27.0 1.1E+03 0.024 28.0 17.2 62 165-230 1473-1534(1930)
78 PF09744 Jnk-SapK_ap_N: JNK_SA 26.9 3.9E+02 0.0085 22.6 12.7 38 192-232 76-113 (158)
79 KOG4403 Cell surface glycoprot 26.8 4.4E+02 0.0095 26.4 8.8 40 157-199 254-298 (575)
80 PF09304 Cortex-I_coil: Cortex 26.5 3.4E+02 0.0074 21.8 10.2 25 160-184 14-38 (107)
81 smart00150 SPEC Spectrin repea 26.4 2.4E+02 0.0051 19.9 9.3 46 165-210 41-93 (101)
82 PF00170 bZIP_1: bZIP transcri 26.3 2.3E+02 0.005 19.7 8.9 35 196-230 28-62 (64)
83 PRK00888 ftsB cell division pr 26.2 2.5E+02 0.0055 22.0 6.0 39 148-187 21-59 (105)
84 PF04728 LPP: Lipoprotein leuc 26.1 1.6E+02 0.0035 20.9 4.3 36 198-233 7-42 (56)
85 PF09177 Syntaxin-6_N: Syntaxi 26.0 1.4E+02 0.003 22.7 4.4 20 211-230 42-61 (97)
86 PF00038 Filament: Intermediat 25.7 5E+02 0.011 23.4 16.6 62 160-221 45-109 (312)
87 KOG0977 Nuclear envelope prote 25.6 5.3E+02 0.012 26.3 9.5 9 81-89 65-73 (546)
88 KOG1029 Endocytic adaptor prot 25.4 8.9E+02 0.019 26.3 11.6 39 171-213 467-505 (1118)
89 PF12325 TMF_TATA_bd: TATA ele 25.4 3.7E+02 0.0079 21.8 11.3 36 158-193 19-54 (120)
90 PF03148 Tektin: Tektin family 25.4 6.1E+02 0.013 24.3 11.1 73 168-240 20-96 (384)
91 PRK06851 hypothetical protein; 25.3 4.4E+02 0.0095 25.4 8.6 60 168-227 114-176 (367)
92 TIGR00606 rad50 rad50. This fa 25.1 8.4E+02 0.018 27.3 11.8 77 157-234 845-921 (1311)
93 PF02646 RmuC: RmuC family; I 23.8 5.8E+02 0.013 23.5 9.4 44 158-201 2-45 (304)
94 PF07989 Microtub_assoc: Micro 23.7 3.1E+02 0.0067 20.3 8.5 35 199-233 34-68 (75)
95 cd01878 HflX HflX subfamily. 23.4 1.5E+02 0.0033 24.7 4.6 30 159-188 3-32 (204)
96 PF14772 NYD-SP28: Sperm tail 23.3 3.4E+02 0.0075 20.7 9.3 40 189-233 30-69 (104)
97 PF10226 DUF2216: Uncharacteri 22.3 5.5E+02 0.012 22.7 11.0 68 157-224 57-145 (195)
98 KOG0612 Rho-associated, coiled 22.3 9.8E+02 0.021 27.1 11.1 71 160-234 463-534 (1317)
99 PRK05431 seryl-tRNA synthetase 22.1 7.4E+02 0.016 24.1 10.5 68 160-229 27-94 (425)
100 PF09730 BicD: Microtubule-ass 22.0 9.6E+02 0.021 25.4 13.0 20 215-234 419-438 (717)
101 PF00435 Spectrin: Spectrin re 21.9 3E+02 0.0064 19.4 8.9 47 164-210 43-96 (105)
102 PLN02678 seryl-tRNA synthetase 21.7 7.9E+02 0.017 24.3 11.3 28 167-194 38-65 (448)
103 PRK01156 chromosome segregatio 21.6 9.7E+02 0.021 25.3 17.5 29 117-145 160-188 (895)
104 PF04568 IATP: Mitochondrial A 21.4 2.1E+02 0.0045 22.6 4.7 26 158-183 72-97 (100)
105 PF08580 KAR9: Yeast cortical 21.4 9.6E+02 0.021 25.1 13.9 125 99-240 179-307 (683)
106 PF04977 DivIC: Septum formati 21.0 3.1E+02 0.0066 19.3 5.6 26 159-184 21-46 (80)
107 PF01496 V_ATPase_I: V-type AT 20.9 5.6E+02 0.012 26.7 9.1 70 143-216 208-279 (759)
108 PF08671 SinI: Anti-repressor 20.6 1.9E+02 0.0042 17.8 3.4 24 199-222 1-24 (30)
109 KOG0837 Transcriptional activa 20.4 7E+02 0.015 23.2 9.2 40 194-233 227-266 (279)
110 TIGR00998 8a0101 efflux pump m 20.2 6.5E+02 0.014 22.7 11.3 19 87-105 60-78 (334)
111 PF12980 DUF3864: Domain of Un 20.2 28 0.00061 26.0 -0.5 11 98-108 16-26 (82)
112 PF14971 DUF4510: Domain of un 20.2 5.5E+02 0.012 21.9 7.4 48 159-206 33-90 (163)
113 PF15397 DUF4618: Domain of un 20.2 6.9E+02 0.015 23.0 16.5 73 116-188 70-150 (258)
No 1
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=100.00 E-value=2.1e-62 Score=433.27 Aligned_cols=213 Identities=43% Similarity=0.723 Sum_probs=200.5
Q ss_pred ccccCCCCCCCCCCCChHHHHHHHHHHHHHHHhcCCCCCCccCCCCCCCcCCcC--CChhhHHHHHHHHcCCCCCCCCcc
Q 025332 26 AEIIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFE--NHPMLAKEYERVRAGKPPAVLDTT 103 (254)
Q Consensus 26 ~~~vDaLPYID~~~~~p~~r~~ve~LI~eEm~~~~~~p~~~l~~l~plp~~~f~--~sp~l~~E~eRv~~~~p~~~iD~s 103 (254)
.++||||||||.+|++|+++++|++||++||++. .++++||+.+||++.+.|. .+|+|.+||+|++++.||.+|||+
T Consensus 6 ~~~vDaLPYiD~~~~~~~~~~~a~~lI~eE~~~~-~~~~~~l~~lp~~~~~~~~~~~t~~l~~E~~R~~~~~~~~~lD~s 84 (221)
T PF05700_consen 6 EVLVDALPYIDPDYDTPEERQAAEALIEEEMRRY-RPTKNYLPHLPPPPEPPFSAFETPLLQAELERVASGEPMQGLDMS 84 (221)
T ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHHHHhhc-CCCchhHHhCCCCCCCCcccccchhHHHHHHHHHcCCCCCccCHH
Confidence 4599999999999988999999999999999943 4567899999886654432 259999999999999999999999
Q ss_pred cccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 104 RYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNR 183 (254)
Q Consensus 104 RY~lp~P~~~~~~D~~aW~~al~na~aqLehq~~R~~NLELL~k~g~naW~~~n~~Le~~~~~le~~l~~~r~~ie~vN~ 183 (254)
||++|+|++++.+|+++|++|++||+++++|+.+|+.|||||.+||.|+|++||++|+++++.+++++..+|++|++||+
T Consensus 85 RY~l~~p~~~~~~d~~~w~~al~na~a~lehq~~R~~NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~ 164 (221)
T PF05700_consen 85 RYELPPPPSGKSNDVEAWKEALDNAYAQLEHQRLRLENLELLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNR 164 (221)
T ss_pred hcCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc
Q 025332 184 ERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGWNLD 239 (254)
Q Consensus 184 ~RK~~Q~~~~~~L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~~~~~~~~~~~ 239 (254)
.||..|+.+|.+|+.|+.+|+++|+||++|++||.+||+||.++|+++++++...+
T Consensus 165 ~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~~~~ 220 (221)
T PF05700_consen 165 ERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKENQQ 220 (221)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999988764
No 2
>KOG3096 consensus Spliceosome-associated coiled-coil protein [Function unknown]
Probab=100.00 E-value=5.7e-59 Score=398.90 Aligned_cols=213 Identities=38% Similarity=0.660 Sum_probs=199.7
Q ss_pred ccccCCCCCCCCCCCChHHHHHHHHHHHHHHHhcCCCCCCccCCCCCCCcCCcCCChhhHHHHHHHHcCCCCCCCCcccc
Q 025332 26 AEIIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFENHPMLAKEYERVRAGKPPAVLDTTRY 105 (254)
Q Consensus 26 ~~~vDaLPYID~~~~~p~~r~~ve~LI~eEm~~~~~~p~~~l~~l~plp~~~f~~sp~l~~E~eRv~~~~p~~~iD~sRY 105 (254)
.++||||||||++|++|+.|+.|.+||++||++ ++|++++-+.+|+|.+.|..||+|.+||+|+.++.||..|||+||
T Consensus 4 ~v~vDALPY~D~~Y~e~~~Rs~a~~lVEeE~rr--~rptknyl~~lp~p~~s~f~t~~m~ne~er~~~k~pm~~l~msRy 81 (225)
T KOG3096|consen 4 EVSVDALPYFDSGYNEPGDRSAAAALVEEECRR--YRPTKNYLDHLPLPDYSAFLTDRMENEFERAGKKEPMEALDMSRY 81 (225)
T ss_pred ceeeccccccccccCchhhHHHHHHHHHHHHHh--hcchhhhhhcCCCcccchhhhhHHHHHHHHHhccCcchhhhHHhh
Confidence 679999999999999999999999999999998 567665555578888765569999999999999999999999999
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 106 QLEILPANKRNDESAWKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRER 185 (254)
Q Consensus 106 ~lp~P~~~~~~D~~aW~~al~na~aqLehq~~R~~NLELL~k~g~naW~~~n~~Le~~~~~le~~l~~~r~~ie~vN~~R 185 (254)
.+|.||+++++|..+|+++|.|+++++|||.+|++|||||++||+++|+.+|+.|+.++..++++|.++|+.|++|||+|
T Consensus 82 elp~Ppagkr~d~~aW~e~l~ns~aqlEhq~~r~~NLeLM~k~g~eaw~~~ne~le~~l~~aqkelq~~kk~iq~vn~~R 161 (225)
T KOG3096|consen 82 ELPAPPAGKRNDDAAWQESLLNSMAQLEHQLVRNENLELMSKHGEEAWKQYNEVLEVMLTHAQKELQKTKKLIQDVNRQR 161 (225)
T ss_pred cCCCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCcc
Q 025332 186 KYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGWNLDIDM 242 (254)
Q Consensus 186 K~~Q~~~~~~L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~~~~~~~~~~~~~~ 242 (254)
|..|+.+|.+|+.||++|..+|+|||+|++||..||.+|. +.+++.+||+++..-
T Consensus 162 K~~Q~~ag~rL~~le~~wvqLv~knyeie~a~~~le~~i~--~~r~q~r~~~le~~~ 216 (225)
T KOG3096|consen 162 KHAQLTAGERLRELEQKWVQLVSKNYEIEVACVQLETQID--KKRQQERGWNLEPKL 216 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH--HHHHHHhcCCCCchh
Confidence 9999999999999999999999999999999999999999 556677889986543
No 3
>PRK10884 SH3 domain-containing protein; Provisional
Probab=81.71 E-value=24 Score=31.22 Aligned_cols=9 Identities=33% Similarity=0.541 Sum_probs=3.7
Q ss_pred HcCCCCCCC
Q 025332 92 RAGKPPAVL 100 (254)
Q Consensus 92 ~~~~p~~~i 100 (254)
.+|.+..-|
T Consensus 51 ~~G~~v~vl 59 (206)
T PRK10884 51 NAGEEVTLL 59 (206)
T ss_pred cCCCEEEEE
Confidence 344444333
No 4
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=80.56 E-value=28 Score=32.45 Aligned_cols=77 Identities=17% Similarity=0.315 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 117 DESAWKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYEL 196 (254)
Q Consensus 117 D~~aW~~al~na~aqLehq~~R~~NLELL~k~g~naW~~~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L 196 (254)
++++.-.-|.+-.+...|...|+. .-++.|..-..+|+++ ..+|
T Consensus 55 ~PEQYLTPLQQKEV~iRHLkakLk-------------------------es~~~l~dRetEI~eL-----------ksQL 98 (305)
T PF15290_consen 55 NPEQYLTPLQQKEVCIRHLKAKLK-------------------------ESENRLHDRETEIDEL-----------KSQL 98 (305)
T ss_pred CHHHhcChHHHHHHHHHHHHHHHH-------------------------HHHHHHHhhHHHHHHH-----------HHHH
Confidence 345555566666666666666544 1233333334444443 3345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 197 NALSTQWRELCAKNIEIQAACANIESHIEELRK 229 (254)
Q Consensus 197 ~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~ 229 (254)
..+...|.+--=..+|-..|..+-+.||.+||+
T Consensus 99 ~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQ 131 (305)
T PF15290_consen 99 ARMREDWIEEECHRVEAQLALKEARKEIKQLKQ 131 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777877766677888888888888888887
No 5
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=73.30 E-value=77 Score=29.99 Aligned_cols=94 Identities=14% Similarity=0.284 Sum_probs=46.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHH
Q 025332 146 SKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQ---------------------NTAYELNALSTQWR 204 (254)
Q Consensus 146 ~k~g~naW~~~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~---------------------~~~~~L~~Le~~W~ 204 (254)
.+.-..-|++|.++++.+.+..+..+....-.++.+.+.=-+.=. .+-.+|..+..+++
T Consensus 218 ~k~DakDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~ 297 (384)
T KOG0972|consen 218 LKQDAKDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYK 297 (384)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556788877777777666666555444444433332111111 12233344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc
Q 025332 205 ELCAKNIEIQAACANIESHIEELRKEAAESGWNLD 239 (254)
Q Consensus 205 ~lv~kn~eie~A~~~Le~ei~~lk~~~~~~~~~~~ 239 (254)
.+-..+-.--...-++-.|++++|++-.+.|.-..
T Consensus 298 q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~~ms 332 (384)
T KOG0972|consen 298 QASVGVSSRTETLDEVMDEIEQLKQEMEEQGAKMS 332 (384)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 43222211112223444678888888777776543
No 6
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=72.17 E-value=59 Score=27.46 Aligned_cols=20 Identities=30% Similarity=0.195 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025332 119 SAWKQALQKAQRLSQHQLIR 138 (254)
Q Consensus 119 ~aW~~al~na~aqLehq~~R 138 (254)
..++..+......+.+...+
T Consensus 84 ~~~~~~l~~l~~el~~l~~~ 103 (191)
T PF04156_consen 84 SELQQQLQQLQEELDQLQER 103 (191)
T ss_pred HhHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443333
No 7
>PRK11637 AmiB activator; Provisional
Probab=71.42 E-value=75 Score=30.67 Aligned_cols=33 Identities=9% Similarity=0.077 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 157 NQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQ 189 (254)
Q Consensus 157 n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q 189 (254)
...+..-++.++++++.+++++.++....+..+
T Consensus 42 ~~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~ 74 (428)
T PRK11637 42 ASDNRDQLKSIQQDIAAKEKSVRQQQQQRASLL 74 (428)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555566666666666655555554433
No 8
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=70.34 E-value=87 Score=31.08 Aligned_cols=40 Identities=15% Similarity=0.204 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 025332 196 LNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESG 235 (254)
Q Consensus 196 L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~~~~~~~ 235 (254)
+..+..+...+.....+++.+..+++.++..++++-..+.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 133 FDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445555566666667777788888888888877755543
No 9
>PRK10884 SH3 domain-containing protein; Provisional
Probab=70.31 E-value=77 Score=28.00 Aligned_cols=11 Identities=0% Similarity=-0.000 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 025332 125 LQKAQRLSQHQ 135 (254)
Q Consensus 125 l~na~aqLehq 135 (254)
+.....++.-.
T Consensus 95 lp~le~el~~l 105 (206)
T PRK10884 95 VPDLENQVKTL 105 (206)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 10
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=68.68 E-value=87 Score=27.97 Aligned_cols=46 Identities=15% Similarity=0.186 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 156 HNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALST 201 (254)
Q Consensus 156 ~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~ 201 (254)
+|.+++..+...++++..+.++|+++...|+.----...-+..|+.
T Consensus 71 ~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~ 116 (251)
T PF11932_consen 71 YNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQ 116 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888888888888888888777765544333333333433
No 11
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=66.73 E-value=45 Score=23.96 Aligned_cols=58 Identities=14% Similarity=0.252 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 164 LLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRK 229 (254)
Q Consensus 164 ~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~ 229 (254)
...|+.++.....--+++++.|. .... ++.+=++.-.+|-+++.-+..|+.+++++|.
T Consensus 3 QsaL~~EirakQ~~~eEL~kvk~-~n~~-------~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 3 QSALEAEIRAKQAIQEELTKVKS-ANLA-------FESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HhHHHHHHHHHHHHHHHHHHHHH-HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45678888888888888887643 3334 4444455556677777777888888888765
No 12
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=62.61 E-value=2.5e+02 Score=31.11 Aligned_cols=83 Identities=16% Similarity=0.242 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 025332 150 PEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELC-AKNIEIQAACANIESHIEELR 228 (254)
Q Consensus 150 ~naW~~~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~lv-~kn~eie~A~~~Le~ei~~lk 228 (254)
.+.=..|+.....+...+.......+.+++.+...+...+...-..+..|+..|..-. ...-++...-..+..++..++
T Consensus 376 ~di~~ky~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 455 (1201)
T PF12128_consen 376 QDIESKYNKLKQKLEEAFNRQQERLQAQQDEIREEKAERREQIEEEYQALEQELRQQSQEQLEELQEQREQLKSELAELK 455 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456666777777778888888888888888888888888889999999998432 223344455555566666666
Q ss_pred HHHH
Q 025332 229 KEAA 232 (254)
Q Consensus 229 ~~~~ 232 (254)
.+..
T Consensus 456 ~~~~ 459 (1201)
T PF12128_consen 456 QQLK 459 (1201)
T ss_pred HHHh
Confidence 5543
No 13
>PF05149 Flagellar_rod: Paraflagellar rod protein; InterPro: IPR007824 This family consists of several eukaryotic paraflagellar rod component proteins. The eukaryotic flagellum represents one of the most complex macromolecular structures found in any organism and contains more than 250 proteins []. In addition to its locomotive role, the flagellum is probably involved in nutrient uptake since receptors for host low-density lipoproteins are localised on the flagellar membrane as well as on the flagellar pocket membrane [].; GO: 0005516 calmodulin binding, 0009434 microtubule-based flagellum
Probab=59.37 E-value=1.5e+02 Score=27.64 Aligned_cols=66 Identities=17% Similarity=0.180 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 025332 160 LEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAAC----ANIESHIEELRK 229 (254)
Q Consensus 160 Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~lv~kn~eie~A~----~~Le~ei~~lk~ 229 (254)
-...+...+..|..+...|+..+..+...+...... ...|...+++|.+-+.+| .+|+.++..+-.
T Consensus 11 ~~~~~~~~~~Dl~~i~e~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~n~e~q~~lw~~i~el~~~L~~l~~ 80 (289)
T PF05149_consen 11 KRRQKQACEEDLERIKEKIQNTDAEDAAQRKRYAAQ----RKESEKFLQKNEEQQQELWREIQELERELQDLAE 80 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788889999999999988888777655444 556666666676666555 455555555443
No 14
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=56.26 E-value=1.1e+02 Score=24.81 Aligned_cols=73 Identities=18% Similarity=0.233 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 117 DESAWKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQ 189 (254)
Q Consensus 117 D~~aW~~al~na~aqLehq~~R~~NLELL~k~g~naW~~~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q 189 (254)
+...+.+.+-.--++.+..-.|..-+-=|.+.....|..-+..++.-...+.+++..+|.+++.....|+..+
T Consensus 43 ~~~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~k~ 115 (139)
T PF05615_consen 43 ESQFLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQNKE 115 (139)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666777777777666556677788899999999999999999999999999999999999888
No 15
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=56.03 E-value=1.8e+02 Score=27.21 Aligned_cols=19 Identities=42% Similarity=0.494 Sum_probs=9.8
Q ss_pred HHHHHHcCCCCCCCCcccc
Q 025332 87 EYERVRAGKPPAVLDTTRY 105 (254)
Q Consensus 87 E~eRv~~~~p~~~iD~sRY 105 (254)
|-++|++|+++-.||.+.+
T Consensus 61 eG~~V~kG~~L~~ld~~~~ 79 (423)
T TIGR01843 61 EGDRVKAGQVLVELDATDV 79 (423)
T ss_pred CCCEecCCCeEEEEccchh
Confidence 3455556655555554443
No 16
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=55.14 E-value=1.6e+02 Score=26.50 Aligned_cols=67 Identities=22% Similarity=0.305 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q 025332 164 LLGMQRLAQEQNEKIEAVNRERKYHQQNT---AYELNALSTQWRELCAKNIEIQAAC-------ANIESHIEELRKE 230 (254)
Q Consensus 164 ~~~le~~l~~~r~~ie~vN~~RK~~Q~~~---~~~L~~Le~~W~~lv~kn~eie~A~-------~~Le~ei~~lk~~ 230 (254)
.+..++-|.+++++++.++.+|+.+=... ...+..||.-+++.-+..-.+...+ ..|..+|.+++.+
T Consensus 27 ~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 27 LENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456677777777777777777654443 4445556666665555444444444 4455555566555
No 17
>PHA02562 46 endonuclease subunit; Provisional
Probab=55.04 E-value=2.2e+02 Score=28.02 Aligned_cols=29 Identities=14% Similarity=0.303 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 196 LNALSTQWRELCAKNIEIQAACANIESHI 224 (254)
Q Consensus 196 L~~Le~~W~~lv~kn~eie~A~~~Le~ei 224 (254)
+..++..-..++.+.-.++..+..|+.++
T Consensus 215 i~~l~~e~~~l~~~~~~l~~~l~~l~~~i 243 (562)
T PHA02562 215 IARKQNKYDELVEEAKTIKAEIEELTDEL 243 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444443333333333333333
No 18
>PHA01750 hypothetical protein
Probab=54.13 E-value=86 Score=23.10 Aligned_cols=23 Identities=13% Similarity=0.086 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025332 160 LEALLLGMQRLAQEQNEKIEAVN 182 (254)
Q Consensus 160 Le~~~~~le~~l~~~r~~ie~vN 182 (254)
-+++.+-++++|.+++.+|+++|
T Consensus 33 kdAvkeIV~~ELdNL~~ei~~~k 55 (75)
T PHA01750 33 KDAVKEIVNSELDNLKTEIEELK 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667778899999999999998
No 19
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=53.78 E-value=2.5e+02 Score=28.33 Aligned_cols=110 Identities=16% Similarity=0.218 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 119 SAWKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNA 198 (254)
Q Consensus 119 ~aW~~al~na~aqLehq~~R~~NLELL~k~g~naW~~~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~ 198 (254)
..|.+.+.+.-..++-+-.... +...+|-=-.=+.....++..+..++..+..++..++++-..=+.....+..-...
T Consensus 71 ~~~~~i~~~~~~~ie~~l~~ae--~~~~~~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~ 148 (569)
T PRK04778 71 QKWDEIVTNSLPDIEEQLFEAE--ELNDKFRFRKAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDL 148 (569)
T ss_pred HHHHHHHHhhhhhHHHHHHHHH--HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555554444 35566655555556778889999999999999999999987766555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 199 LSTQWRELCAKNIEIQAACANIESHIEELRKE 230 (254)
Q Consensus 199 Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~~ 230 (254)
+..--+.++.++...+-|...||..+..+...
T Consensus 149 y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~ 180 (569)
T PRK04778 149 YRELRKSLLANRFSFGPALDELEKQLENLEEE 180 (569)
T ss_pred HHHHHHHHHhcCccccchHHHHHHHHHHHHHH
Confidence 66666777888889999999999888877664
No 20
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=51.28 E-value=1.7e+02 Score=25.76 Aligned_cols=42 Identities=19% Similarity=0.240 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 025332 193 AYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAES 234 (254)
Q Consensus 193 ~~~L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~~~~~~ 234 (254)
...++.||..-+.+...+.++|.....|.++|..|..+-.++
T Consensus 73 k~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl 114 (193)
T PF14662_consen 73 KTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKL 114 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 344556788888888888888888888888888887765543
No 21
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=51.22 E-value=1.3e+02 Score=24.35 Aligned_cols=74 Identities=18% Similarity=0.171 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 156 HNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKE 230 (254)
Q Consensus 156 ~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~~ 230 (254)
-+..|+.....+..++-++-.+.+++...-+.-. ....++..|+.++..++.=-=|-.-.+.+|+++|.++|.-
T Consensus 38 el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~-~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~m 111 (120)
T PF12325_consen 38 ELARLEAERDELREEIVKLMEENEELRALKKEVE-ELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEM 111 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666666654433222 3455666677766655433323344677888888888763
No 22
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.21 E-value=3.4e+02 Score=29.23 Aligned_cols=80 Identities=14% Similarity=0.124 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHcCC
Q 025332 159 RLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIE--ELRKEAAESGW 236 (254)
Q Consensus 159 ~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~lv~kn~eie~A~~~Le~ei~--~lk~~~~~~~~ 236 (254)
.+...+..++++......+|+..|-+-|.--+.+...+-..+.-++.---+-.++|.-..+|..+-+ .....++..|+
T Consensus 546 ~ikdqldelskE~esk~~eidi~n~qlkelk~~~~~q~lake~~yk~e~d~~ke~et~~lel~~~ke~e~~~asa~~~~~ 625 (1118)
T KOG1029|consen 546 AIKDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAKEELYKNERDKLKEAETKALELIGEKEAESAPASAADAGA 625 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhcccCCC
Confidence 3455556667777777777777777777766666666666776666544555566666666654333 33335555555
Q ss_pred CC
Q 025332 237 NL 238 (254)
Q Consensus 237 ~~ 238 (254)
+-
T Consensus 626 ~~ 627 (1118)
T KOG1029|consen 626 PA 627 (1118)
T ss_pred Cc
Confidence 53
No 23
>PRK11637 AmiB activator; Provisional
Probab=50.97 E-value=2.4e+02 Score=27.22 Aligned_cols=33 Identities=15% Similarity=0.189 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 196 LNALSTQWRELCAKNIEIQAACANIESHIEELR 228 (254)
Q Consensus 196 L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk 228 (254)
+..|+..-...-...-+++.....|+..|.+++
T Consensus 221 l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l~ 253 (428)
T PRK11637 221 LTGLESSLQKDQQQLSELRANESRLRDSIARAE 253 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444333333444555555555555443
No 24
>PRK03918 chromosome segregation protein; Provisional
Probab=50.84 E-value=3.2e+02 Score=28.63 Aligned_cols=66 Identities=17% Similarity=0.186 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 121 WKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKY 187 (254)
Q Consensus 121 W~~al~na~aqLehq~~R~~NLELL~k~g~naW~~~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~ 187 (254)
...+..++.........++.+|+-........ .-....++..+..+.+++..++.++..+...++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~i-~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~ 225 (880)
T PRK03918 160 YENAYKNLGEVIKEIKRRIERLEKFIKRTENI-EELIKEKEKELEEVLREINEISSELPELREELEK 225 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555556666666666665554333222 2223344555555666666666666666555443
No 25
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=50.79 E-value=1.1e+02 Score=23.12 Aligned_cols=28 Identities=32% Similarity=0.504 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHcC
Q 025332 208 AKNIEIQAACANI----ESHIEELRKEAAESG 235 (254)
Q Consensus 208 ~kn~eie~A~~~L----e~ei~~lk~~~~~~~ 235 (254)
.+.+++|.+-..+ |.||..||++-..+|
T Consensus 46 ~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~r~ 77 (79)
T PF08581_consen 46 QKVYELEQAHRKMKQQYEEEIARLRRELEQRG 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3456777766655 478888888766655
No 26
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=49.28 E-value=72 Score=25.05 Aligned_cols=63 Identities=21% Similarity=0.308 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 167 MQRLAQEQNEKIEAVNRERK---YHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKE 230 (254)
Q Consensus 167 le~~l~~~r~~ie~vN~~RK---~~Q~~~~~~L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~~ 230 (254)
+.+....+.+++.++-..|. ..+.....++..|..+.+.... +.+.......++.++..-+++
T Consensus 8 ~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~~r~~ 73 (106)
T PF05837_consen 8 LQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKKSRQR 73 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555544443 3344445666667777766644 455555566666666655554
No 27
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=49.23 E-value=1.1e+02 Score=30.67 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 164 LLGMQRLAQEQNEKIEAVNRERKYHQ 189 (254)
Q Consensus 164 ~~~le~~l~~~r~~ie~vN~~RK~~Q 189 (254)
...||++|+.+|++.+.+.+.++..|
T Consensus 78 asELEKqLaaLrqElq~~saq~~dle 103 (475)
T PRK13729 78 AAQMQKQYEEIRRELDVLNKQRGDDQ 103 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 34567777777777776666665543
No 28
>PHA02562 46 endonuclease subunit; Provisional
Probab=48.87 E-value=2.6e+02 Score=27.43 Aligned_cols=28 Identities=11% Similarity=0.206 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 159 RLEALLLGMQRLAQEQNEKIEAVNRERK 186 (254)
Q Consensus 159 ~Le~~~~~le~~l~~~r~~ie~vN~~RK 186 (254)
.|++....++.++..+...+.++.....
T Consensus 303 ~l~d~i~~l~~~l~~l~~~i~~~~~~~~ 330 (562)
T PHA02562 303 KIKDKLKELQHSLEKLDTAIDELEEIMD 330 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666666664444433
No 29
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=48.71 E-value=2.9e+02 Score=27.65 Aligned_cols=59 Identities=15% Similarity=0.197 Sum_probs=45.6
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 143 ELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALST 201 (254)
Q Consensus 143 ELL~k~g~naW~~~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~ 201 (254)
+.+...+..-=..+...|+.+++-+...|...+++|+++...|.........+++.|..
T Consensus 121 ~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~ 179 (475)
T PRK10361 121 RIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQ 179 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444556778999999999999999999999999998888766666666643
No 30
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=48.22 E-value=94 Score=23.23 Aligned_cols=50 Identities=16% Similarity=0.134 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 025332 159 RLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNA-LSTQWRELCA 208 (254)
Q Consensus 159 ~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~-Le~~W~~lv~ 208 (254)
.|..++..|+.++...+-+-.+++..=+..+...+...+. |+..|..+|.
T Consensus 14 ~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~ 64 (79)
T PF06657_consen 14 ALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVK 64 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHH
Confidence 4666777777777777777777776666666555555544 7887777765
No 31
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=47.94 E-value=1.8e+02 Score=27.93 Aligned_cols=39 Identities=26% Similarity=0.336 Sum_probs=26.7
Q ss_pred HHHHcCCCCCCCCcccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 89 ERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRLENLE 143 (254)
Q Consensus 89 eRv~~~~p~~~iD~sRY~lp~P~~~~~~D~~aW~~al~na~aqLehq~~R~~NLE 143 (254)
..|.+|.++-.||-.+|. .++++|.+.+....-.+.||+
T Consensus 73 q~Vk~Gd~L~~iD~~~y~----------------~al~qAea~la~a~~~~~~~~ 111 (352)
T COG1566 73 QLVKKGDVLFRIDPRDYR----------------AALEQAEAALAAAEAQLRNLR 111 (352)
T ss_pred CEecCCCeEEEECcHHHH----------------HHHHHHHHHHHHHHHHHHHHH
Confidence 456667666667666655 677788888777777777655
No 32
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=45.86 E-value=2.6e+02 Score=26.24 Aligned_cols=99 Identities=13% Similarity=0.099 Sum_probs=62.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 137 IRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAA 216 (254)
Q Consensus 137 ~R~~NLELL~k~g~naW~~~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~lv~kn~eie~A 216 (254)
++..=.|+=.||- -=.+.|.+|++....|.=++.-++..++++--.=-..|-....+.+.|+..=.. .-.|...
T Consensus 82 lk~~l~evEekyr--kAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~----~d~L~~e 155 (302)
T PF09738_consen 82 LKDSLAEVEEKYR--KAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRA----HDSLREE 155 (302)
T ss_pred HHHHHHHHHHHHH--HHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 3444456667884 446888999999999988888888888876544333333333444444322111 1123444
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCcCc
Q 025332 217 CANIESHIEELRKEAAESGWNLDID 241 (254)
Q Consensus 217 ~~~Le~ei~~lk~~~~~~~~~~~~~ 241 (254)
+..|+.+|.+...-..+.||-|...
T Consensus 156 ~~~Lre~L~~rdeli~khGlVlv~~ 180 (302)
T PF09738_consen 156 LDELREQLKQRDELIEKHGLVLVPD 180 (302)
T ss_pred HHHHHHHHHHHHHHHHHCCeeeCCC
Confidence 5567777777777778889887653
No 33
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=45.84 E-value=4.6e+02 Score=29.03 Aligned_cols=48 Identities=19% Similarity=0.234 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 186 KYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAE 233 (254)
Q Consensus 186 K~~Q~~~~~~L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~~~~~ 233 (254)
|..|...-.++..+...|...++++-.++.....|+.|+..+++.++.
T Consensus 877 k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~ 924 (1174)
T KOG0933|consen 877 KAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKAN 924 (1174)
T ss_pred HHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHH
Confidence 445555666788889999999999999999999999999988886554
No 34
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=45.61 E-value=3.4e+02 Score=27.45 Aligned_cols=109 Identities=17% Similarity=0.212 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 120 AWKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNAL 199 (254)
Q Consensus 120 aW~~al~na~aqLehq~~R~~NLELL~k~g~naW~~~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~L 199 (254)
.|.+.+...-..++.+-.... +...+|---.=+-....++..+..++..+..+...++++-..=+........-...+
T Consensus 68 ~w~~i~~~~~~~ie~~L~~ae--~~~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y 145 (560)
T PF06160_consen 68 KWDEIVTKQLPEIEEQLFEAE--EYADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKY 145 (560)
T ss_pred HHHHHHHHhhHHHHHHHHHHH--HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444 244555444444456778888888999999999988888776555555555555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 200 STQWRELCAKNIEIQAACANIESHIEELRKE 230 (254)
Q Consensus 200 e~~W~~lv~kn~eie~A~~~Le~ei~~lk~~ 230 (254)
..-=+.++.++...+-|+..||..+..+...
T Consensus 146 ~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~ 176 (560)
T PF06160_consen 146 RELRKELLAHSFSYGPAIEELEKQLENIEEE 176 (560)
T ss_pred HHHHHHHHHhhhhhchhHHHHHHHHHHHHHH
Confidence 6667778888899999999999888877663
No 35
>PRK09039 hypothetical protein; Validated
Probab=43.83 E-value=2.9e+02 Score=26.16 Aligned_cols=10 Identities=30% Similarity=0.684 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 025332 220 IESHIEELRK 229 (254)
Q Consensus 220 Le~ei~~lk~ 229 (254)
|..||+.||.
T Consensus 142 L~~qI~aLr~ 151 (343)
T PRK09039 142 LNQQIAALRR 151 (343)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 36
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=43.25 E-value=4e+02 Score=27.67 Aligned_cols=76 Identities=20% Similarity=0.256 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 152 VWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELR 228 (254)
Q Consensus 152 aW~~~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk 228 (254)
.....|..|+..+..+++++.+++.+.+.+-+.=+ .-..-..+++.++.+-..+-.+-.+=..-..+|+..+.+++
T Consensus 433 ~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~-~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 433 RLEEENSELKRELEELKREIEKLESELERFRREVR-DKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446666666666666666666666665533211 11222333444444444432222223334445555555555
No 37
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=41.48 E-value=3.1e+02 Score=27.74 Aligned_cols=80 Identities=16% Similarity=0.137 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCcc
Q 025332 163 LLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGWNLDIDM 242 (254)
Q Consensus 163 ~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~~~~~~~~~~~~~~ 242 (254)
....|.++|...+-+++.+-+.=+..-..+...+++|+....++=+-...|...-.++. ...-|.++.+++
T Consensus 376 Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~~~i~~~~~~i~---------~~~nd~~l~iN~ 446 (622)
T COG5185 376 EREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNITRSRSQIG---------HNVNDSSLKINI 446 (622)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHh---------hcCCCCceeecc
Confidence 35668888888888888888888888888888888899888887666666555322222 334456666665
Q ss_pred ccccccccC
Q 025332 243 EKGFLAQSG 251 (254)
Q Consensus 243 ~~~~~~~~~ 251 (254)
+.-+-..||
T Consensus 447 E~~~~~~sg 455 (622)
T COG5185 447 EQLFPKGSG 455 (622)
T ss_pred ccCCccccC
Confidence 555544444
No 38
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=40.78 E-value=1.3e+02 Score=28.20 Aligned_cols=71 Identities=13% Similarity=0.187 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 156 HNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKE 230 (254)
Q Consensus 156 ~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~~ 230 (254)
-...++.....+.++|.++.++-+++..+.+.-+......-..-++-|.+. +.++ ..-.++..+...++.+
T Consensus 51 el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~--n~~~--~~l~~~~~e~~sl~~q 121 (314)
T PF04111_consen 51 ELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREY--NELQ--LELIEFQEERDSLKNQ 121 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH--HHHHHHHHHHHHHHHH
Confidence 445556666777777777777777777776666655544333344455553 2222 2333444444444443
No 39
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=40.11 E-value=1.5e+02 Score=21.84 Aligned_cols=32 Identities=28% Similarity=0.387 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 199 LSTQWRELCAKNIEIQAACANIESHIEELRKE 230 (254)
Q Consensus 199 Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~~ 230 (254)
|...-.++-.+|..+......|+.+..+++.+
T Consensus 23 Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e 54 (72)
T PF06005_consen 23 LQMENEELKEKNNELKEENEELKEENEQLKQE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444555555555555543
No 40
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=39.39 E-value=3.7e+02 Score=26.11 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025332 211 IEIQAACANIESHIEELRKEAAE 233 (254)
Q Consensus 211 ~eie~A~~~Le~ei~~lk~~~~~ 233 (254)
.+++.....++.+|.+++.+...
T Consensus 239 ~~~~~~i~~l~~~i~~~~~~~~~ 261 (457)
T TIGR01000 239 ATIQQQIDQLQKSIASYQVQKAG 261 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555566666666666655443
No 41
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=38.72 E-value=1.3e+02 Score=28.28 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 199 LSTQWRELCAKNIEIQAACANIESHIEELRK 229 (254)
Q Consensus 199 Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~ 229 (254)
|+..-..+-.+|-++..-...||.||..+|+
T Consensus 253 l~ge~~~Le~rN~~LK~qa~~lerEI~ylKq 283 (294)
T KOG4571|consen 253 LLGELEGLEKRNEELKDQASELEREIRYLKQ 283 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445566676677788888888776
No 42
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=38.50 E-value=4.2e+02 Score=26.53 Aligned_cols=80 Identities=19% Similarity=0.195 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCC
Q 025332 158 QRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIE-IQAACANIESHIEELRKEAAESGW 236 (254)
Q Consensus 158 ~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~lv~kn~e-ie~A~~~Le~ei~~lk~~~~~~~~ 236 (254)
..++...+.+++.+..+..++..+-++ +..+.+....|..=..-|..-+.+--+ ...++...+.+|.+|+.+-+.+=.
T Consensus 371 ~~~e~~kk~~e~k~~q~q~k~~k~~ke-l~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf 449 (493)
T KOG0804|consen 371 SDLEAEKKIVERKLQQLQTKLKKCQKE-LKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMF 449 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhe
Confidence 344555555555555555555555444 223334445555555666666665433 345777888888888877666544
Q ss_pred CC
Q 025332 237 NL 238 (254)
Q Consensus 237 ~~ 238 (254)
-+
T Consensus 450 ~l 451 (493)
T KOG0804|consen 450 FL 451 (493)
T ss_pred eh
Confidence 44
No 43
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=37.46 E-value=4.4e+02 Score=26.51 Aligned_cols=75 Identities=15% Similarity=0.225 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 160 LEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAY---ELNALSTQWRE-------LCAKNIEIQAACANIESHIEELRK 229 (254)
Q Consensus 160 Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~---~L~~Le~~W~~-------lv~kn~eie~A~~~Le~ei~~lk~ 229 (254)
++..++.|+..+..+++.+++--..-+.-|+.... ....|..++.. .|+.-++++.+..+=|.||+.|++
T Consensus 388 ~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ~ 467 (527)
T PF15066_consen 388 IEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQQ 467 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 44556677777777777777776666666766532 22336666655 455678888888888999999988
Q ss_pred HHHHc
Q 025332 230 EAAES 234 (254)
Q Consensus 230 ~~~~~ 234 (254)
-.+++
T Consensus 468 lkgel 472 (527)
T PF15066_consen 468 LKGEL 472 (527)
T ss_pred HHHHH
Confidence 66553
No 44
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=37.14 E-value=3.2e+02 Score=24.76 Aligned_cols=19 Identities=11% Similarity=0.434 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025332 211 IEIQAACANIESHIEELRK 229 (254)
Q Consensus 211 ~eie~A~~~Le~ei~~lk~ 229 (254)
++++..+..|+.|+.-++.
T Consensus 120 ~~le~~i~~L~eEl~fl~~ 138 (312)
T PF00038_consen 120 VDLENQIQSLKEELEFLKQ 138 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 3344444555555544444
No 45
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=37.12 E-value=5.4e+02 Score=27.37 Aligned_cols=26 Identities=19% Similarity=0.405 Sum_probs=15.9
Q ss_pred CCeecccCCCCCCCCCcccccCCCCCCCC
Q 025332 9 GDILMLEAPPDAARPWNAEIIDALPYIDD 37 (254)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~vDaLPYID~ 37 (254)
+.+.++-+|-|++. +.++||+=|+=.
T Consensus 23 ~~~~~i~G~NGsGK---S~ll~ai~~~lg 48 (1179)
T TIGR02168 23 KGITGIVGPNGCGK---SNIVDAIRWVLG 48 (1179)
T ss_pred CCcEEEECCCCCCh---hHHHHHHHHHHc
Confidence 44566666665553 467777766643
No 46
>PRK04863 mukB cell division protein MukB; Provisional
Probab=36.71 E-value=7.1e+02 Score=28.65 Aligned_cols=59 Identities=14% Similarity=0.065 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHhhhhHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 131 LSQHQLIRLENLELMSKHGPEV---------WRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQ 189 (254)
Q Consensus 131 qLehq~~R~~NLELL~k~g~na---------W~~~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q 189 (254)
++.|..-|...+|=..+|-..- .......++..+..++..+..++++.+....++...+
T Consensus 274 ~~r~~eERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~e 341 (1486)
T PRK04863 274 YMRHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQ 341 (1486)
T ss_pred HhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557777777777665554211 1114445555566666677777777766666655544
No 47
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=36.10 E-value=1.6e+02 Score=23.38 Aligned_cols=21 Identities=29% Similarity=0.333 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025332 160 LEALLLGMQRLAQEQNEKIEA 180 (254)
Q Consensus 160 Le~~~~~le~~l~~~r~~ie~ 180 (254)
|...+..++..+.....+++.
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~ 98 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEK 98 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444333333
No 48
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=35.63 E-value=4.4e+02 Score=27.53 Aligned_cols=64 Identities=14% Similarity=0.186 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 165 LGMQRLAQEQNEKIEAVNRERKYHQQNTAYE-------LNALSTQWRELCAKNIEIQAACANIESHIEELRK 229 (254)
Q Consensus 165 ~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~-------L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~ 229 (254)
..++.++..+++...+++..-+.-+.....- +..|+..-..++.+. ..+....+|-++|.+||-
T Consensus 244 ~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-~e~~~r~kL~N~i~eLkG 314 (670)
T KOG0239|consen 244 QALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK-KEKEERRKLHNEILELKG 314 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhc
Confidence 3344444444444444555554444443333 333444455555555 555777788888888876
No 49
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=35.07 E-value=2e+02 Score=21.76 Aligned_cols=53 Identities=19% Similarity=0.226 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 179 EAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEA 231 (254)
Q Consensus 179 e~vN~~RK~~Q~~~~~~L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~~~ 231 (254)
++|.+.-+..+...-.+...|...-..++.+.-.+.-.|..|+.|-+-|+.=-
T Consensus 8 ~d~e~~~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI 60 (80)
T PF10224_consen 8 EDIEKLEKEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYI 60 (80)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666777777888899999999999999999999998888877643
No 50
>PF12548 DUF3740: Sulfatase protein; InterPro: IPR024609 This uncharacterised domain is found in the C-terminal region of extracellular sulphatase proteins.
Probab=34.98 E-value=70 Score=26.83 Aligned_cols=28 Identities=18% Similarity=0.456 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 150 PEVWRQHNQRLEALLLGMQRLAQEQNEK 177 (254)
Q Consensus 150 ~naW~~~n~~Le~~~~~le~~l~~~r~~ 177 (254)
.++|+.|-.+++..++.|+..|..+|.-
T Consensus 101 ~~aWk~hr~~ID~eIe~Lq~Ki~~LKei 128 (145)
T PF12548_consen 101 PKAWKDHRLHIDHEIETLQDKIKNLKEI 128 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4889999999888888888888877653
No 51
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=34.95 E-value=3.1e+02 Score=23.94 Aligned_cols=98 Identities=18% Similarity=0.217 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH
Q 025332 132 SQHQLIRLENLELMSKHGPEVWRQ---------HNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQ------QNTAYEL 196 (254)
Q Consensus 132 Lehq~~R~~NLELL~k~g~naW~~---------~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q------~~~~~~L 196 (254)
-.|..+-..||+|........=-+ ....+..-..+|..-|...+.+++++.+.-+..+ ..+...+
T Consensus 16 ~YYndIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl 95 (201)
T PF13851_consen 16 NYYNDITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARL 95 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777788888876655433222 1222233333444444444444444444333222 1234555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 197 NALSTQWRELCAKNIEIQAACANIESHIEELRK 229 (254)
Q Consensus 197 ~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~ 229 (254)
..++..-.++--.+-.++.-|..++.|-.+|.+
T Consensus 96 ~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~ 128 (201)
T PF13851_consen 96 KELEKELKDLKWEHEVLEQRFEKLEQERDELYR 128 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666677777776666665
No 52
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=34.93 E-value=2.8e+02 Score=23.45 Aligned_cols=37 Identities=27% Similarity=0.323 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 192 TAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEA 231 (254)
Q Consensus 192 ~~~~L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~~~ 231 (254)
.......++.+-.+. +..|...+..|+.+|+..|-.-
T Consensus 118 ~r~e~~~~~~ki~e~---~~ki~~ei~~lr~~iE~~K~~~ 154 (177)
T PF07798_consen 118 IREEQAKQELKIQEL---NNKIDTEIANLRTEIESLKWDT 154 (177)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556664443 3334444557888888877653
No 53
>PF10398 DUF2443: Protein of unknown function (DUF2443); InterPro: IPR019469 This entry represents a small group of highly conserved proteins from bacteria, in particular Helicobacter species. The structure is a bundle of alpha helices. The function is not known. ; PDB: 1ZKE_F.
Probab=34.87 E-value=76 Score=23.84 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 163 LLLGMQRLAQEQNEKIEAVNRERK 186 (254)
Q Consensus 163 ~~~~le~~l~~~r~~ie~vN~~RK 186 (254)
...++..++.++|..|+.+|+..|
T Consensus 51 ~~~QideeV~~LKe~IdaLNK~Kk 74 (79)
T PF10398_consen 51 FLAQIDEEVEKLKEHIDALNKIKK 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678889999999999999854
No 54
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=34.15 E-value=5.2e+02 Score=26.30 Aligned_cols=98 Identities=17% Similarity=0.201 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 120 AWKQALQKAQRLSQHQLIR-LENLELMSKHGPEVWRQHNQ----------RLEALLLGMQRLAQEQNEKIEAVNRERKYH 188 (254)
Q Consensus 120 aW~~al~na~aqLehq~~R-~~NLELL~k~g~naW~~~n~----------~Le~~~~~le~~l~~~r~~ie~vN~~RK~~ 188 (254)
+|..--.--+.+.+....+ ..||+-|..-|..++..-.. .++.-+..+...+..+-..|..|++.=...
T Consensus 298 aR~~k~~~e~sk~eeL~~~L~~~lea~q~agkla~Qe~~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~q 377 (531)
T PF15450_consen 298 ARDAKEKLEESKAEELATKLQENLEAMQLAGKLAQQETQSELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDLQ 377 (531)
T ss_pred HHHHHhHHHHhhHHHHHHHHHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 3333333334444455555 35788888888888877332 334445667777888888899999987777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 189 QQNTAYELNALSTQWRELCAKNIEIQAAC 217 (254)
Q Consensus 189 Q~~~~~~L~~Le~~W~~lv~kn~eie~A~ 217 (254)
=...+.+|..+...|.+-+.++++=-..|
T Consensus 378 EqtL~~rL~e~~~e~~~~~r~~lekl~~~ 406 (531)
T PF15450_consen 378 EQTLNLRLSEAKNEWESDERKSLEKLDQW 406 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77779999999999999999987643333
No 55
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=34.08 E-value=6.7e+02 Score=29.73 Aligned_cols=48 Identities=13% Similarity=0.143 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 151 EVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNA 198 (254)
Q Consensus 151 naW~~~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~ 198 (254)
.-|..-...+++-++.++.++..++..+..+|+.||..+...+.-...
T Consensus 953 ~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~ 1000 (1930)
T KOG0161|consen 953 QKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDD 1000 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777888889999999999999999999999966655544433
No 56
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=33.66 E-value=3.7e+02 Score=27.43 Aligned_cols=44 Identities=14% Similarity=0.141 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 025332 163 LLLGMQRLAQEQNEKIEAVNRERKYHQQNT---AYELNALSTQWREL 206 (254)
Q Consensus 163 ~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~---~~~L~~Le~~W~~l 206 (254)
+...++.++...++-|++.++.|-..+... ..++..|..+|...
T Consensus 86 ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~ 132 (546)
T KOG0977|consen 86 IKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKA 132 (546)
T ss_pred hhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344566677777777777777776555443 45666666666655
No 57
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=33.55 E-value=2.4e+02 Score=22.22 Aligned_cols=9 Identities=22% Similarity=0.261 Sum_probs=4.2
Q ss_pred ccCCCCCCC
Q 025332 66 FLKNLPPLS 74 (254)
Q Consensus 66 ~l~~l~plp 74 (254)
.||..|.+|
T Consensus 6 vLPtRP~PP 14 (97)
T PF15136_consen 6 VLPTRPEPP 14 (97)
T ss_pred CCCCCCCCC
Confidence 345444444
No 58
>smart00338 BRLZ basic region leucin zipper.
Probab=33.28 E-value=1.7e+02 Score=20.43 Aligned_cols=36 Identities=22% Similarity=0.398 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 195 ELNALSTQWRELCAKNIEIQAACANIESHIEELRKE 230 (254)
Q Consensus 195 ~L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~~ 230 (254)
.+..|+.+-..+...|-++...+..|+.|+..++..
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888888888888888765
No 59
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=32.60 E-value=4.6e+02 Score=25.18 Aligned_cols=118 Identities=14% Similarity=0.271 Sum_probs=73.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH------------------HHHHHH
Q 025332 115 RNDESAWKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRL------------------AQEQNE 176 (254)
Q Consensus 115 ~~D~~aW~~al~na~aqLehq~~R~~NLELL~k~g~naW~~~n~~Le~~~~~le~~------------------l~~~r~ 176 (254)
..|+.+|+--|....-+|. + -.+-...-|+.|.++.......+++. +.++..
T Consensus 190 ~vd~~eWklEvERV~PqLK---v-------~~~~d~kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~s 259 (359)
T PF10498_consen 190 KVDPAEWKLEVERVLPQLK---V-------TIRADAKDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIES 259 (359)
T ss_pred cCCHHHHHHHHHHHhhhhe---e-------eccCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999888887772 1 01111245666555554444444444 443333
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCcc
Q 025332 177 KIEAVNRERKYHQ---QNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGWNLDIDM 242 (254)
Q Consensus 177 ~ie~vN~~RK~~Q---~~~~~~L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~~~~~~~~~~~~~~ 242 (254)
.-.-||.+=...- -.+..+|.....++++.-..+-+......++-.++++.|++-.++|-..++..
T Consensus 260 REk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~s 328 (359)
T PF10498_consen 260 REKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGS 328 (359)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 3333443211111 12345667778888888777777888888899999999999999998886653
No 60
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=32.46 E-value=73 Score=27.38 Aligned_cols=41 Identities=12% Similarity=0.279 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHcCC
Q 025332 196 LNALSTQWRELCAKNIEIQAACA---NIESHIEELRKEAAESGW 236 (254)
Q Consensus 196 L~~Le~~W~~lv~kn~eie~A~~---~Le~ei~~lk~~~~~~~~ 236 (254)
|..+|.++..-|-+|.-+|.... .|+.++.+||.+++++-+
T Consensus 2 LeD~EsklN~AIERnalLE~ELdEKE~L~~~~QRLkDE~RDLKq 45 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESELDEKENLREEVQRLKDELRDLKQ 45 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666654443332 233444444444444333
No 61
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=31.76 E-value=2.1e+02 Score=21.74 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 198 ALSTQWRELCAKNIEIQAACANIESHIEELRKEAA 232 (254)
Q Consensus 198 ~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~~~~ 232 (254)
.+-.+-+++|....-+|..+..||..|..|..+..
T Consensus 51 ~lp~~~keLL~EIA~lE~eV~~LE~~v~~L~~~l~ 85 (88)
T PF14389_consen 51 SLPKKAKELLEEIALLEAEVAKLEQKVLSLYRQLF 85 (88)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778899999998999999999999999988754
No 62
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=31.60 E-value=2.7e+02 Score=23.00 Aligned_cols=63 Identities=13% Similarity=0.190 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 119 SAWKQALQKAQRLSQHQLIRLENLELMSKH-GPEVWRQ-----------HNQRLEALLLGMQRLAQEQNEKIEAV 181 (254)
Q Consensus 119 ~aW~~al~na~aqLehq~~R~~NLELL~k~-g~naW~~-----------~n~~Le~~~~~le~~l~~~r~~ie~v 181 (254)
.+.+.-+..++.++++..-...-++|++.- -.--+++ -+.+|+...+.+++.+..+..+.+.|
T Consensus 33 ~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~~les~~e~I 107 (131)
T KOG1760|consen 33 DDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIEELESELESI 107 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455788899999999998888888888765 1112333 23555566666666666655555544
No 63
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=30.83 E-value=7.8e+02 Score=27.35 Aligned_cols=52 Identities=21% Similarity=0.286 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Q 025332 157 NQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALS----TQWRELCA 208 (254)
Q Consensus 157 n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le----~~W~~lv~ 208 (254)
...++.....++..+..+..++..++.+++.-.......+..+. ..|.+..+
T Consensus 673 ~~~~~~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~ 728 (1201)
T PF12128_consen 673 EEAKEERKEQIEEQLNELEEELKQLKQELEELLEELKEQLKELRNELKAQWQELEA 728 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666666667777777666666666655555544 45555433
No 64
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=30.66 E-value=6.5e+02 Score=26.41 Aligned_cols=107 Identities=20% Similarity=0.242 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q 025332 120 AWKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNT------- 192 (254)
Q Consensus 120 aW~~al~na~aqLehq~~R~~NLELL~k~g~naW~~~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~------- 192 (254)
.-+..|.+.+...++...++.||.=-. ..=+.....||.-+...++.-..+.++..+-=+.||.....+
T Consensus 457 ~lk~eL~qlr~ene~Lq~Kl~~L~~aR----q~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~ 532 (697)
T PF09726_consen 457 SLKSELSQLRQENEQLQNKLQNLVQAR----QQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQA 532 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccc
Confidence 446677777777777777776643221 112223333333333333333333333333333333222222
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 193 -----------AYELNALSTQWRELCAKNIEIQAACANIESHIEELRKE 230 (254)
Q Consensus 193 -----------~~~L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~~ 230 (254)
..+.+.||..-+.+-..--.-|-.|..||.|+.+++..
T Consensus 533 ~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 533 QATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22334455555554444444555666666666655553
No 65
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=30.60 E-value=9.6e+02 Score=28.32 Aligned_cols=83 Identities=16% Similarity=0.256 Sum_probs=59.3
Q ss_pred hhHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 148 HGPEVWRQHNQRLEA---------------LLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIE 212 (254)
Q Consensus 148 ~g~naW~~~n~~Le~---------------~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~lv~kn~e 212 (254)
.-..-|+.++..|.. .+.+|+.++......|.+++..=...|..+...+..|...-..+....=+
T Consensus 1285 ~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~q 1364 (1822)
T KOG4674|consen 1285 EENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELEEKENLIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQ 1364 (1822)
T ss_pred HHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567776554433 46677888888888888888887777777788888887777777777777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025332 213 IQAACANIESHIEELRKE 230 (254)
Q Consensus 213 ie~A~~~Le~ei~~lk~~ 230 (254)
++.+...|++....+.++
T Consensus 1365 l~~~~~rL~~~~~e~~~q 1382 (1822)
T KOG4674|consen 1365 LEDLKTRLAAALSEKNAQ 1382 (1822)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777777666555554
No 66
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=30.33 E-value=2.8e+02 Score=25.69 Aligned_cols=74 Identities=15% Similarity=0.259 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHhhh--hHHHHHHHHH---HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 133 QHQLIRLENLELMSKH--GPEVWRQHNQ---RLEALLLGMQRLAQEQ-NEKIEAVNRERKYHQQNTAYELNALSTQWREL 206 (254)
Q Consensus 133 ehq~~R~~NLELL~k~--g~naW~~~n~---~Le~~~~~le~~l~~~-r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~l 206 (254)
..+.+-+.|++|+.++ |.|++.--.+ ++-+.+..++..+..+ ..+-+-|-..|+.+--.+..++..+..+|...
T Consensus 225 qvneLEvsN~DLsaKLe~gknaY~~~ieke~q~raeL~acEEkl~kmeE~Qa~~l~~aR~~errkvraqf~dfsskyg~f 304 (311)
T PF04642_consen 225 QVNELEVSNIDLSAKLEPGKNAYLAAIEKENQARAELNACEEKLKKMEEEQAEMLRAARTEERRKVRAQFHDFSSKYGNF 304 (311)
T ss_pred hhhheecccHHHHHhhcCCcchHHHHHhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhh
Confidence 4667778899999887 7888876443 3334444555555544 23445567778888777888888887777654
No 67
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=30.04 E-value=4.5e+02 Score=24.28 Aligned_cols=49 Identities=22% Similarity=0.254 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 160 LEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIE 212 (254)
Q Consensus 160 Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~lv~kn~e 212 (254)
|.+.......--.+++.+++++-+++...... ..-|..+-..+|.|..+
T Consensus 42 LQas~dEa~~L~~~L~~kl~eLqkk~~Ea~lA----VtPLKak~AslV~kc~e 90 (277)
T PF15030_consen 42 LQASRDEATRLQDELQGKLEELQKKQHEANLA----VTPLKAKLASLVQKCRE 90 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhc----cchHHHHHHHHHHHHHH
Confidence 33333333333344555666654433222222 22344444555555444
No 68
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=30.00 E-value=1.6e+02 Score=25.24 Aligned_cols=51 Identities=16% Similarity=0.161 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 130 RLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAV 181 (254)
Q Consensus 130 aqLehq~~R~~NLELL~k~g~naW~~~n~~Le~~~~~le~~l~~~r~~ie~v 181 (254)
-.|++...|+.||+=..+.-... .+.+.+++..++.+++.|..++..+-.|
T Consensus 111 ~~L~e~snki~kLe~~~k~L~d~-Iv~~~~i~e~IKd~de~L~~I~d~iK~I 161 (163)
T PF03233_consen 111 PTLEEISNKIRKLETEVKKLKDN-IVTEKLIEELIKDFDERLKEIRDKIKKI 161 (163)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhh-ccccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34667777999999888887777 8899999999999999999999887654
No 69
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=29.12 E-value=7.3e+02 Score=26.48 Aligned_cols=69 Identities=20% Similarity=0.277 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 162 ALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKE 230 (254)
Q Consensus 162 ~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~~ 230 (254)
.....++..+....+.+..|+..|..........+..+...-.++-.++-.++.-.......+..++.+
T Consensus 433 ~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee 501 (775)
T PF10174_consen 433 EALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEE 501 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhH
Confidence 344566677777777777777776666555556666666666665555544444433333344444433
No 70
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=28.92 E-value=5.3e+02 Score=24.76 Aligned_cols=23 Identities=13% Similarity=0.310 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025332 210 NIEIQAACANIESHIEELRKEAA 232 (254)
Q Consensus 210 n~eie~A~~~Le~ei~~lk~~~~ 232 (254)
.+.|-.|+.+|+.||.++--+-+
T Consensus 330 lv~IKqAl~kLk~EI~qMdvrIG 352 (359)
T PF10498_consen 330 LVKIKQALTKLKQEIKQMDVRIG 352 (359)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhh
Confidence 56788899999999888765543
No 71
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=28.70 E-value=6.9e+02 Score=26.04 Aligned_cols=23 Identities=4% Similarity=0.075 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025332 157 NQRLEALLLGMQRLAQEQNEKIE 179 (254)
Q Consensus 157 n~~Le~~~~~le~~l~~~r~~ie 179 (254)
+..+...+..|+.++...++++.
T Consensus 445 ~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 445 LEELKREIEKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555554444444
No 72
>PRK03918 chromosome segregation protein; Provisional
Probab=28.39 E-value=7e+02 Score=26.05 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 196 LNALSTQWRELCAKNIEIQAACANIESHIEE 226 (254)
Q Consensus 196 L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~ 226 (254)
+..++.+...+-.+--++......++.+|..
T Consensus 661 ~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~~ 691 (880)
T PRK03918 661 YEELREEYLELSRELAGLRAELEELEKRREE 691 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444333333333333333333333
No 73
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=27.85 E-value=2.8e+02 Score=25.34 Aligned_cols=22 Identities=23% Similarity=0.444 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025332 210 NIEIQAACANIESHIEELRKEA 231 (254)
Q Consensus 210 n~eie~A~~~Le~ei~~lk~~~ 231 (254)
..+++..+..|+.+|++|+++.
T Consensus 224 ~~~leken~~lr~~v~~l~~el 245 (269)
T KOG3119|consen 224 VAELEKENEALRTQVEQLKKEL 245 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555543
No 74
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=27.43 E-value=1.5e+02 Score=20.85 Aligned_cols=36 Identities=25% Similarity=0.311 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 194 YELNALSTQWRELCAKNIEIQAACANIESHIEELRK 229 (254)
Q Consensus 194 ~~L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~ 229 (254)
.+++.|-..-...+...=+|..|...|..||.++.+
T Consensus 17 a~MK~l~~~aeq~L~~~~~i~~al~~Lk~EIaklE~ 52 (53)
T PF08898_consen 17 AQMKALAAQAEQQLAEAGDIAAALEKLKAEIAKLEA 52 (53)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHhc
Confidence 355666666667777777888899999999988754
No 75
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=27.33 E-value=3.3e+02 Score=21.84 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 150 PEVWRQHNQRLEALLLGMQRLAQEQNEKIEA 180 (254)
Q Consensus 150 ~naW~~~n~~Le~~~~~le~~l~~~r~~ie~ 180 (254)
...|....+.|++.+..|+.+.....+.|.+
T Consensus 32 ~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~e 62 (107)
T PF09304_consen 32 QGELAKQKDQLRNALQSLQAQNASRNQRIAE 62 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443333333333
No 76
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=27.24 E-value=8.4e+02 Score=26.59 Aligned_cols=65 Identities=14% Similarity=0.111 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 119 SAWKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKY 187 (254)
Q Consensus 119 ~aW~~al~na~aqLehq~~R~~NLELL~k~g~naW~~~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~ 187 (254)
-+|+.-+++.+.. |..+|....+||.||+.-+=.+-..+.... .++++..++..+++++-+++-.
T Consensus 420 l~~e~ry~klkek--~t~l~~~h~~lL~K~~di~kQle~~~~s~~--~~~~~~~~L~d~le~~~~~~~~ 484 (980)
T KOG0980|consen 420 LAAENRYEKLKEK--YTELRQEHADLLRKYDDIQKQLESAEQSID--DVEEENTNLNDQLEELQRAAGR 484 (980)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666655543 455677888999999976655533322222 3444444455555554444433
No 77
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=26.98 E-value=1.1e+03 Score=27.98 Aligned_cols=62 Identities=24% Similarity=0.258 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 165 LGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKE 230 (254)
Q Consensus 165 ~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~~ 230 (254)
..+...+.....+++++++..|..| .++..|+.+=.++=.++.+++.+...++.++.+|+..
T Consensus 1473 ~kl~~~lee~~e~~e~l~renk~l~----~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~a 1534 (1930)
T KOG0161|consen 1473 QKLKNALEELLEQLEELRRENKNLS----QEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAA 1534 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444555555544443 3344445444444444445555555555555555553
No 78
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=26.91 E-value=3.9e+02 Score=22.62 Aligned_cols=38 Identities=24% Similarity=0.375 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 192 TAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAA 232 (254)
Q Consensus 192 ~~~~L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~~~~ 232 (254)
+-.++-.+|..|..-.. ++..-+..|+.++.+|..++.
T Consensus 76 ~e~~l~~~Ed~~~~e~k---~L~~~v~~Le~e~r~L~~~~~ 113 (158)
T PF09744_consen 76 AEEELLELEDQWRQERK---DLQSQVEQLEEENRQLELKLK 113 (158)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhh
Confidence 34566667899987633 555567777777777775543
No 79
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=26.78 E-value=4.4e+02 Score=26.43 Aligned_cols=40 Identities=33% Similarity=0.392 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q 025332 157 NQRLEALLLGMQRLAQEQNEK-----IEAVNRERKYHQQNTAYELNAL 199 (254)
Q Consensus 157 n~~Le~~~~~le~~l~~~r~~-----ie~vN~~RK~~Q~~~~~~L~~L 199 (254)
....|..+..+++.|.+.+.+ ++.+|-+||.. .+..|+.|
T Consensus 254 Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~---ea~rl~el 298 (575)
T KOG4403|consen 254 LQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLD---EAPRLSEL 298 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHh---hhhhhhhh
Confidence 344555666677777766665 77777788776 34444443
No 80
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=26.49 E-value=3.4e+02 Score=21.75 Aligned_cols=25 Identities=12% Similarity=0.300 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 160 LEALLLGMQRLAQEQNEKIEAVNRE 184 (254)
Q Consensus 160 Le~~~~~le~~l~~~r~~ie~vN~~ 184 (254)
+++-+..|+..+...|.-++++-++
T Consensus 14 l~n~La~Le~slE~~K~S~~eL~kq 38 (107)
T PF09304_consen 14 LQNRLASLERSLEDEKTSQGELAKQ 38 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 3444444444444444444444333
No 81
>smart00150 SPEC Spectrin repeats.
Probab=26.36 E-value=2.4e+02 Score=19.92 Aligned_cols=46 Identities=20% Similarity=0.354 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HH------HHHHHHHHHHHHHHHHHHHHHHH
Q 025332 165 LGMQRLAQEQNEKIEAVNRER-KY------HQQNTAYELNALSTQWRELCAKN 210 (254)
Q Consensus 165 ~~le~~l~~~r~~ie~vN~~R-K~------~Q~~~~~~L~~Le~~W~~lv~kn 210 (254)
+.++.++...+..++.||..= +. .-......+..|+.+|..+....
T Consensus 41 ~~~~~e~~~~~~~v~~~~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~ 93 (101)
T smart00150 41 EALEAELEAHEERVEALNELGEQLIEEGHPDAEEIEERLEELNERWEELKELA 93 (101)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555441 11 22345666778888888775543
No 82
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=26.30 E-value=2.3e+02 Score=19.72 Aligned_cols=35 Identities=23% Similarity=0.407 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 196 LNALSTQWRELCAKNIEIQAACANIESHIEELRKE 230 (254)
Q Consensus 196 L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~~ 230 (254)
+..|+.+-..+...|-.+...+..|..++..|+.+
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45677777777777777777777777777777654
No 83
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=26.15 E-value=2.5e+02 Score=21.97 Aligned_cols=39 Identities=10% Similarity=0.031 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 148 HGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKY 187 (254)
Q Consensus 148 ~g~naW~~~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~ 187 (254)
||.+.|..+ ..+...+..+++++++++.+.+.+..+-+.
T Consensus 21 ~g~~G~~~~-~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~ 59 (105)
T PRK00888 21 FGKNGILDY-WRVNDQVAAQQQTNAKLKARNDQLFAEIDD 59 (105)
T ss_pred ccCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445554333 234444444555555555555444444333
No 84
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=26.13 E-value=1.6e+02 Score=20.88 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 198 ALSTQWRELCAKNIEIQAACANIESHIEELRKEAAE 233 (254)
Q Consensus 198 ~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~~~~~ 233 (254)
.|...-..+=++.=+|......|+.+|...+.+++.
T Consensus 7 ~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaR 42 (56)
T PF04728_consen 7 QLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAAR 42 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333444444444444444433
No 85
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=25.96 E-value=1.4e+02 Score=22.73 Aligned_cols=20 Identities=30% Similarity=0.438 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025332 211 IEIQAACANIESHIEELRKE 230 (254)
Q Consensus 211 ~eie~A~~~Le~ei~~lk~~ 230 (254)
-++..+|..++.++.+|.+.
T Consensus 42 ~eL~~~l~~ie~~L~DL~~a 61 (97)
T PF09177_consen 42 RELRNALQSIEWDLEDLEEA 61 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 37777888888888888774
No 86
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=25.65 E-value=5e+02 Score=23.45 Aligned_cols=62 Identities=13% Similarity=0.214 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 160 LEALLLGMQRLAQEQNEKIEAVNRERKYHQQNT---AYELNALSTQWRELCAKNIEIQAACANIE 221 (254)
Q Consensus 160 Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~---~~~L~~Le~~W~~lv~kn~eie~A~~~Le 221 (254)
.......++.++..+|+.|++++..+-.-+... ...+..+..+|......+-.++..+..|+
T Consensus 45 ~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lr 109 (312)
T PF00038_consen 45 VSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLR 109 (312)
T ss_dssp -HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 444567788899999999999998887777655 45666677777776655555544444333
No 87
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=25.64 E-value=5.3e+02 Score=26.35 Aligned_cols=9 Identities=11% Similarity=0.239 Sum_probs=4.1
Q ss_pred ChhhHHHHH
Q 025332 81 HPMLAKEYE 89 (254)
Q Consensus 81 sp~l~~E~e 89 (254)
+..|..++.
T Consensus 65 N~~L~~di~ 73 (546)
T KOG0977|consen 65 NRKLEHDIN 73 (546)
T ss_pred HHHHHHHHH
Confidence 344554443
No 88
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.44 E-value=8.9e+02 Score=26.27 Aligned_cols=39 Identities=26% Similarity=0.373 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 171 AQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEI 213 (254)
Q Consensus 171 l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~lv~kn~ei 213 (254)
+..+|.+|+.+++.|-.+= .++..|..+-+++-.++..+
T Consensus 467 ~tt~kt~ie~~~~q~e~~i----sei~qlqarikE~q~kl~~l 505 (1118)
T KOG1029|consen 467 ITTQKTEIEEVTKQRELMI----SEIDQLQARIKELQEKLQKL 505 (1118)
T ss_pred cchHHHHHHHhhhHHHHHH----HHHHHHHHHHHHHHHHHHhh
Confidence 3445778888888776543 23334444444444444333
No 89
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=25.40 E-value=3.7e+02 Score=21.76 Aligned_cols=36 Identities=17% Similarity=0.260 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 158 QRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTA 193 (254)
Q Consensus 158 ~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~ 193 (254)
..|...+++++.++..++.++..+...|+..-...-
T Consensus 19 e~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv 54 (120)
T PF12325_consen 19 ERLQSQLRRLEGELASLQEELARLEAERDELREEIV 54 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888999999999999999999876554443
No 90
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=25.36 E-value=6.1e+02 Score=24.29 Aligned_cols=73 Identities=21% Similarity=0.291 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCCCcC
Q 025332 168 QRLAQEQNEKIEAVNRERKYHQQNTAYELNA---LSTQWRELCAKNIE-IQAACANIESHIEELRKEAAESGWNLDI 240 (254)
Q Consensus 168 e~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~---Le~~W~~lv~kn~e-ie~A~~~Le~ei~~lk~~~~~~~~~~~~ 240 (254)
+.-....+.-+++.+...+..|......|.. =-..|+.-+.+.++ +...+..|...-..+...-.....|+.+
T Consensus 20 ~~lr~es~~l~~et~~~t~~~q~~~~~~L~~Ri~di~~wk~eL~~~l~~~~~Ei~~L~~~K~~le~aL~~~~~pl~i 96 (384)
T PF03148_consen 20 ERLRQESRRLINETDARTKWDQYDSNKRLRQRIRDIRFWKNELERELEELDEEIDLLEEEKRRLEKALEALRKPLSI 96 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence 3344456777788888888888888777765 23467776555533 4444455555444555555555555543
No 91
>PRK06851 hypothetical protein; Provisional
Probab=25.35 E-value=4.4e+02 Score=25.39 Aligned_cols=60 Identities=22% Similarity=0.327 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 168 QRLAQEQNEKIEAVNRERKYHQQNTAYELNA---LSTQWRELCAKNIEIQAACANIESHIEEL 227 (254)
Q Consensus 168 e~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~---Le~~W~~lv~kn~eie~A~~~Le~ei~~l 227 (254)
+..+...|++|..+|.+.+.--.++..-|.. +...|......++..+.+..-.+.=+.++
T Consensus 114 ~~~l~~~k~eI~~~~~~~~~~~~~Ay~~l~~A~~ihdd~e~~y~~~md~~k~~~~~~~l~~~l 176 (367)
T PRK06851 114 EDKLRKHKEEILKINEEISRCFQRAYEYLNEALAIHDEWEKIYIENMDFAKANELTDELIQEL 176 (367)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3446677888889999888888888777766 78899999999988888766554433333
No 92
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.08 E-value=8.4e+02 Score=27.33 Aligned_cols=77 Identities=13% Similarity=0.067 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 025332 157 NQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAES 234 (254)
Q Consensus 157 n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~~~~~~ 234 (254)
+..+......++.++..++.++.++...+-....... ....|+.+-.+++..+-++..++..++.++..++.+-.++
T Consensus 845 ~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~-~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~ 921 (1311)
T TIGR00606 845 IELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQ-RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKD 921 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
No 93
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=23.78 E-value=5.8e+02 Score=23.53 Aligned_cols=44 Identities=20% Similarity=0.260 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 158 QRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALST 201 (254)
Q Consensus 158 ~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~ 201 (254)
.+|+.+++.+...+...++.|+++...+..........|+.|..
T Consensus 2 ~~l~~l~~pl~e~l~~~~~~l~~~~~~~~~~~~~L~~~l~~l~~ 45 (304)
T PF02646_consen 2 EQLEQLLKPLKEQLEKFEKRLEESFEQRSEEFGSLKEQLKQLSE 45 (304)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888888888888999998888888777777666655544
No 94
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=23.70 E-value=3.1e+02 Score=20.29 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 199 LSTQWRELCAKNIEIQAACANIESHIEELRKEAAE 233 (254)
Q Consensus 199 Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~~~~~ 233 (254)
-...+.+.+..|+++.+.+..|..|+.+++..-.+
T Consensus 34 ~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~ 68 (75)
T PF07989_consen 34 GPESIEELLKENIELKVEVESLKRELQEKKKLLKE 68 (75)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888999999999999999999998875443
No 95
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=23.42 E-value=1.5e+02 Score=24.67 Aligned_cols=30 Identities=17% Similarity=0.238 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 159 RLEALLLGMQRLAQEQNEKIEAVNRERKYH 188 (254)
Q Consensus 159 ~Le~~~~~le~~l~~~r~~ie~vN~~RK~~ 188 (254)
+|+.-.+.+++.+..++++|+.+=++||..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (204)
T cd01878 3 QLETDRRLIRERIAKLRRELEKVKKQRELQ 32 (204)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 577888899999999999999998887653
No 96
>PF14772 NYD-SP28: Sperm tail
Probab=23.35 E-value=3.4e+02 Score=20.73 Aligned_cols=40 Identities=18% Similarity=0.452 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 189 QQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAE 233 (254)
Q Consensus 189 Q~~~~~~L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~~~~~ 233 (254)
...+...+..++.+|...+..+ .+.+|..+|..+++.+..
T Consensus 30 ~~~s~~~~~~I~~~W~~i~~~~-----~~~eL~~~ie~q~~~~e~ 69 (104)
T PF14772_consen 30 EKESRANFEKINERWREILRKK-----KPQELRKEIEEQKQACER 69 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-----cHHHHHHHHHHHHHHHHH
Confidence 3344566777999999987765 678888888888887655
No 97
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=22.32 E-value=5.5e+02 Score=22.70 Aligned_cols=68 Identities=21% Similarity=0.278 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH--------------HHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 157 NQRLEALLLGMQRLAQEQNEKIEAVNRER----KY--------------HQQ---NTAYELNALSTQWRELCAKNIEIQA 215 (254)
Q Consensus 157 n~~Le~~~~~le~~l~~~r~~ie~vN~~R----K~--------------~Q~---~~~~~L~~Le~~W~~lv~kn~eie~ 215 (254)
+..|....+.|+.+-+++|.-.--+---| |. .|. ....+|+.||.+=..++..|+++.-
T Consensus 57 IR~LKe~NqkLqedNqELRdLCCFLDddRqKgrklarEWQrFGryta~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLKE 136 (195)
T PF10226_consen 57 IRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQRFGRYTASVMRQEVAQYQQKLKELEDKQEELIRENLELKE 136 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34555566666666666665543332222 21 122 2357888899999999999999999
Q ss_pred HHHHHHHHH
Q 025332 216 ACANIESHI 224 (254)
Q Consensus 216 A~~~Le~ei 224 (254)
-|.-|..+-
T Consensus 137 lcl~LDeer 145 (195)
T PF10226_consen 137 LCLYLDEER 145 (195)
T ss_pred HHHHHhccc
Confidence 998887654
No 98
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=22.28 E-value=9.8e+02 Score=27.11 Aligned_cols=71 Identities=15% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 025332 160 LEALLLGMQRLAQEQNEKIEAVN-RERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAES 234 (254)
Q Consensus 160 Le~~~~~le~~l~~~r~~ie~vN-~~RK~~Q~~~~~~L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~~~~~~ 234 (254)
++.+.+.|+..+..++.+..+++ .+++..| .+.+..+.+|...-.+.-.++.-...++.|.+.++++-...
T Consensus 463 ~~~~~keL~e~i~~lk~~~~el~~~q~~l~q----~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~ 534 (1317)
T KOG0612|consen 463 LEEMDKELEETIEKLKSEESELQREQKALLQ----HEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNA 534 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 99
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=22.12 E-value=7.4e+02 Score=24.11 Aligned_cols=68 Identities=18% Similarity=0.249 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 160 LEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRK 229 (254)
Q Consensus 160 Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~ 229 (254)
++.+++ +.++..++..+++.+..+|+.-....+.....-+ .-..++.+.-++......|+.++..+..
T Consensus 27 vd~i~~-ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~-~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 94 (425)
T PRK05431 27 VDELLE-LDEERRELQTELEELQAERNALSKEIGQAKRKGE-DAEALIAEVKELKEEIKALEAELDELEA 94 (425)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 343333 5666667777777777777776666654211110 1112333333444445555555544444
No 100
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=21.98 E-value=9.6e+02 Score=25.40 Aligned_cols=20 Identities=30% Similarity=0.390 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHc
Q 025332 215 AACANIESHIEELRKEAAES 234 (254)
Q Consensus 215 ~A~~~Le~ei~~lk~~~~~~ 234 (254)
.-+..|+.++..+...+.+.
T Consensus 419 eri~~LE~ELr~l~~~A~E~ 438 (717)
T PF09730_consen 419 ERISELEKELRALSKLAGES 438 (717)
T ss_pred HHHHHHHHHHHHHHHHHHhH
Confidence 35566777777666665553
No 101
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=21.87 E-value=3e+02 Score=19.44 Aligned_cols=47 Identities=19% Similarity=0.407 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 025332 164 LLGMQRLAQEQNEKIEAVNRERKYH-------QQNTAYELNALSTQWRELCAKN 210 (254)
Q Consensus 164 ~~~le~~l~~~r~~ie~vN~~RK~~-------Q~~~~~~L~~Le~~W~~lv~kn 210 (254)
.+.++.++...+..++.||..=..- -.....++..|..+|..+....
T Consensus 43 ~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~ 96 (105)
T PF00435_consen 43 HKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEKLEELNQRWEALCELV 96 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666443333 2344667777888888876544
No 102
>PLN02678 seryl-tRNA synthetase
Probab=21.73 E-value=7.9e+02 Score=24.32 Aligned_cols=28 Identities=7% Similarity=0.177 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 167 MQRLAQEQNEKIEAVNRERKYHQQNTAY 194 (254)
Q Consensus 167 le~~l~~~r~~ie~vN~~RK~~Q~~~~~ 194 (254)
+..+..++..+++.++.+|+..-...+.
T Consensus 38 ld~~~r~l~~~~e~lr~erN~~sk~I~~ 65 (448)
T PLN02678 38 LDKEWRQRQFELDSLRKEFNKLNKEVAK 65 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666666555554443
No 103
>PRK01156 chromosome segregation protein; Provisional
Probab=21.63 E-value=9.7e+02 Score=25.30 Aligned_cols=29 Identities=7% Similarity=0.212 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 117 DESAWKQALQKAQRLSQHQLIRLENLELM 145 (254)
Q Consensus 117 D~~aW~~al~na~aqLehq~~R~~NLELL 145 (254)
+.+.|..+.+++.........++.+++..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~ei~~le~~ 188 (895)
T PRK01156 160 EINSLERNYDKLKDVIDMLRAEISNIDYL 188 (895)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777788787777777777777643
No 104
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=21.43 E-value=2.1e+02 Score=22.55 Aligned_cols=26 Identities=12% Similarity=0.325 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 158 QRLEALLLGMQRLAQEQNEKIEAVNR 183 (254)
Q Consensus 158 ~~Le~~~~~le~~l~~~r~~ie~vN~ 183 (254)
++|+.+.+.+++++...+++|+++..
T Consensus 72 EqL~~Lk~kl~~e~~~~~k~i~~le~ 97 (100)
T PF04568_consen 72 EQLKKLKEKLKEEIEHHRKEIDELEK 97 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777778888887754
No 105
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=21.35 E-value=9.6e+02 Score=25.14 Aligned_cols=125 Identities=14% Similarity=0.284 Sum_probs=66.1
Q ss_pred CCCcccccCCCCCCCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 99 VLDTTRYQLEILPANKRN---DESAWKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQN 175 (254)
Q Consensus 99 ~iD~sRY~lp~P~~~~~~---D~~aW~~al~na~aqLehq~~R~~NLELL~k~g~naW~~~n~~Le~~~~~le~~l~~~r 175 (254)
..++.|+.+|.-...... +.=+..+.+.=.++.|+..-.|+..-+-+. ....-.--+.|+.--+.|++.-..+.
T Consensus 179 ~~~~~~~~lPtF~~~Desl~~~ll~L~arm~PLraSLdfLP~Ri~~F~~ra---~~~fp~a~e~L~~r~~~L~~k~~~L~ 255 (683)
T PF08580_consen 179 NSSNKRFSLPTFSPQDESLYSSLLALFARMQPLRASLDFLPMRIEEFQSRA---ESIFPSACEELEDRYERLEKKWKKLE 255 (683)
T ss_pred CCCcCCcCCCCCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678887433211111 222344555556677777777776433322 11111112333333333444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCCCcC
Q 025332 176 EKIEAVNRERKYHQQNTAYELNALSTQWRELCAK-NIEIQAACANIESHIEELRKEAAESGWNLDI 240 (254)
Q Consensus 176 ~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~lv~k-n~eie~A~~~Le~ei~~lk~~~~~~~~~~~~ 240 (254)
.+++.+.+ .-.+.+|...... +-|+..-|..+|..+..++.. ...|+.++.
T Consensus 256 ~e~~~LK~-------------ELiedRW~~vFr~l~~q~~~m~esver~~~kl~~~-~~~~~~~~~ 307 (683)
T PF08580_consen 256 KEAESLKK-------------ELIEDRWNIVFRNLGRQAQKMCESVERSLSKLQEA-IDSGIHLDN 307 (683)
T ss_pred HHHHHHHH-------------HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccccccccc
Confidence 44444422 3589999998776 578888888888887666543 233555543
No 106
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=21.01 E-value=3.1e+02 Score=19.29 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 159 RLEALLLGMQRLAQEQNEKIEAVNRE 184 (254)
Q Consensus 159 ~Le~~~~~le~~l~~~r~~ie~vN~~ 184 (254)
.+...+..++++++.++++++++...
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~e 46 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEE 46 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555443
No 107
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=20.90 E-value=5.6e+02 Score=26.74 Aligned_cols=70 Identities=23% Similarity=0.289 Sum_probs=40.5
Q ss_pred HHHhhhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 143 ELMSKHGPEVWRQHN--QRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAA 216 (254)
Q Consensus 143 ELL~k~g~naW~~~n--~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~lv~kn~eie~A 216 (254)
+++..+|.+.+.+.. .......+.+++++++++++++.+..+++..-......+ ..|.+.+.+..++..+
T Consensus 208 ~il~~~~f~~~~~p~~~~~p~e~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~l----~~~~~~l~~~~~~~~~ 279 (759)
T PF01496_consen 208 KILRSFGFERYDLPEDEGTPEEAIKELEEEIEELEKELEELEEELKKLLEKYAEEL----EAWYEYLRKEKEIYEA 279 (759)
T ss_dssp HHHHTTT--B----GGGGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHhhccCceecCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 578888888776533 235567777888888888888888888776554444444 3455555444444333
No 108
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=20.62 E-value=1.9e+02 Score=17.79 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 199 LSTQWRELCAKNIEIQAACANIES 222 (254)
Q Consensus 199 Le~~W~~lv~kn~eie~A~~~Le~ 222 (254)
|...|..+|....++++...+.+.
T Consensus 1 LD~EW~~Li~eA~~~Gls~eeir~ 24 (30)
T PF08671_consen 1 LDEEWVELIKEAKESGLSKEEIRE 24 (30)
T ss_dssp --HHHHHHHHHHHHTT--HHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHH
Confidence 567899999988888887666553
No 109
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=20.40 E-value=7e+02 Score=23.20 Aligned_cols=40 Identities=15% Similarity=0.313 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 194 YELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAE 233 (254)
Q Consensus 194 ~~L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~~~~~ 233 (254)
..|..||.+-+.+...|.+++-....|...+.+++++-.+
T Consensus 227 drisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~~ 266 (279)
T KOG0837|consen 227 DRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQKVME 266 (279)
T ss_pred HHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999998665
No 110
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=20.22 E-value=6.5e+02 Score=22.74 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=12.0
Q ss_pred HHHHHHcCCCCCCCCcccc
Q 025332 87 EYERVRAGKPPAVLDTTRY 105 (254)
Q Consensus 87 E~eRv~~~~p~~~iD~sRY 105 (254)
+=++|++|+++-.||...|
T Consensus 60 ~G~~V~kGq~L~~ld~~~~ 78 (334)
T TIGR00998 60 DTDYVKQGDVLVRLDPTNA 78 (334)
T ss_pred CCCEEcCCCEEEEECchHH
Confidence 4467777877766664443
No 111
>PF12980 DUF3864: Domain of Unknown Function with PDB structure (DUF3864); InterPro: IPR024335 This entry represents a functionally uncharacterised domain found in bacterial sequences. The structure of one of the sequences, A6LGL1 from SWISSPROT from Parabacteroides distasonis atcc 8503, has been determined.; PDB: 3LM3_A.
Probab=20.21 E-value=28 Score=25.97 Aligned_cols=11 Identities=55% Similarity=0.836 Sum_probs=8.6
Q ss_pred CCCCcccccCC
Q 025332 98 AVLDTTRYQLE 108 (254)
Q Consensus 98 ~~iD~sRY~lp 108 (254)
--||++||+|+
T Consensus 16 yvidftrydl~ 26 (82)
T PF12980_consen 16 YVIDFTRYDLK 26 (82)
T ss_dssp EEEEEEESSS-
T ss_pred eEeeeeecccc
Confidence 45999999984
No 112
>PF14971 DUF4510: Domain of unknown function (DUF4510)
Probab=20.19 E-value=5.5e+02 Score=21.93 Aligned_cols=48 Identities=25% Similarity=0.316 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 159 RLEALLLGMQRLAQEQNEKIE----------AVNRERKYHQQNTAYELNALSTQWREL 206 (254)
Q Consensus 159 ~Le~~~~~le~~l~~~r~~ie----------~vN~~RK~~Q~~~~~~L~~Le~~W~~l 206 (254)
.|+.+...|+..+..-|..-+ +--..|+..|+.++.+|..|+..|...
T Consensus 33 eLqaL~eeLqe~~e~RRaawea~vg~~~~Gpewsaar~a~qeaV~~EL~aLq~~we~~ 90 (163)
T PF14971_consen 33 ELQALQEELQEAVEPRRAAWEAKVGGCGQGPEWSAARRALQEAVEQELAALQRAWEQG 90 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455555666655544442221 123569999999999999999999753
No 113
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=20.17 E-value=6.9e+02 Score=23.01 Aligned_cols=73 Identities=15% Similarity=0.325 Sum_probs=52.2
Q ss_pred CCHHHHHHHHH----HHHHHHHHHHHHHHH----HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 116 NDESAWKQALQ----KAQRLSQHQLIRLEN----LELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKY 187 (254)
Q Consensus 116 ~D~~aW~~al~----na~aqLehq~~R~~N----LELL~k~g~naW~~~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~ 187 (254)
++..+|++... ....++++...++.| |.-|..|..--+-+-.-+..++...++..-..+..+.+++|..|+.
T Consensus 70 ~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e~~~~ 149 (258)
T PF15397_consen 70 AELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDELNEMRQM 149 (258)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778877655 445555666666655 4567777777777777677777888888888888888888888764
Q ss_pred H
Q 025332 188 H 188 (254)
Q Consensus 188 ~ 188 (254)
.
T Consensus 150 e 150 (258)
T PF15397_consen 150 E 150 (258)
T ss_pred H
Confidence 3
Done!