Query 025332
Match_columns 254
No_of_seqs 110 out of 198
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 08:12:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025332.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025332hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vmx_A Voltage-gated hydrogen 91.2 1.5 5E-05 29.2 7.6 44 193-236 3-46 (48)
2 3o0z_A RHO-associated protein 88.7 4.1 0.00014 33.9 10.3 73 156-229 4-76 (168)
3 3a2a_A Voltage-gated hydrogen 87.0 2.1 7.1E-05 29.3 6.1 50 189-238 6-55 (58)
4 1gk7_A Vimentin; intermediate 86.7 1.2 4.2E-05 28.2 4.7 35 192-226 4-38 (39)
5 3mq9_A Bone marrow stromal ant 86.3 21 0.0007 33.0 15.7 82 144-232 385-467 (471)
6 1wt6_A Myotonin-protein kinase 84.9 9.5 0.00033 27.9 9.5 62 162-231 14-75 (81)
7 3ol1_A Vimentin; structural ge 83.7 8 0.00027 30.0 9.2 24 166-189 17-40 (119)
8 3s4r_A Vimentin; alpha-helix, 77.5 5 0.00017 30.0 5.8 34 196-229 11-44 (93)
9 3mq9_A Bone marrow stromal ant 72.5 56 0.0019 30.0 13.0 17 216-232 444-460 (471)
10 3i00_A HIP-I, huntingtin-inter 72.4 32 0.0011 26.8 11.3 69 161-229 14-82 (120)
11 2dfs_A Myosin-5A; myosin-V, in 72.4 42 0.0014 35.2 13.1 69 157-225 979-1047(1080)
12 3viq_A SWI5-dependent recombin 72.3 20 0.00068 28.1 8.3 49 160-208 5-53 (122)
13 2oqq_A Transcription factor HY 68.4 18 0.00062 23.2 5.8 36 196-231 5-40 (42)
14 3ghg_A Fibrinogen alpha chain; 62.1 25 0.00085 34.2 8.1 36 121-158 51-86 (562)
15 1ci6_A Transcription factor AT 59.1 30 0.001 23.7 6.2 37 194-230 23-59 (63)
16 1jnm_A Proto-oncogene C-JUN; B 56.9 32 0.0011 23.3 6.0 35 195-229 23-57 (62)
17 3swk_A Vimentin; cytoskeleton, 53.1 59 0.002 23.6 7.3 18 213-230 61-78 (86)
18 1t2k_D Cyclic-AMP-dependent tr 52.9 48 0.0016 22.2 6.4 36 195-230 23-58 (61)
19 2eqb_B RAB guanine nucleotide 51.9 74 0.0025 23.9 8.9 79 155-233 12-94 (97)
20 2v66_B Nuclear distribution pr 50.2 85 0.0029 24.1 11.4 67 148-214 17-97 (111)
21 4h22_A Leucine-rich repeat fli 49.6 84 0.0029 23.9 12.1 76 154-240 15-90 (103)
22 2ocy_A RAB guanine nucleotide 46.5 1.2E+02 0.004 24.7 11.7 106 121-234 18-127 (154)
23 1uo4_A General control protein 46.3 31 0.001 21.1 3.9 26 195-220 2-27 (34)
24 3s4r_A Vimentin; alpha-helix, 45.0 90 0.0031 22.9 11.4 37 194-230 56-92 (93)
25 2hy6_A General control protein 45.0 33 0.0011 21.0 3.9 27 195-221 2-28 (34)
26 1p9i_A Cortexillin I/GCN4 hybr 44.7 26 0.00088 20.5 3.2 25 158-182 2-26 (31)
27 2e7s_A RAB guanine nucleotide 44.2 41 0.0014 26.8 5.5 104 123-234 8-115 (135)
28 3c3g_A Alpha/beta peptide with 43.8 53 0.0018 19.9 4.6 25 196-220 2-26 (33)
29 3he5_B Synzip2; heterodimeric 41.8 69 0.0024 20.7 6.5 36 198-233 7-42 (52)
30 2v71_A Nuclear distribution pr 38.8 1.7E+02 0.0059 24.4 13.9 16 196-211 132-147 (189)
31 3t98_B Nucleoporin NUP58/NUP45 38.0 1.2E+02 0.0041 22.4 12.2 75 156-230 6-87 (93)
32 2wq1_A General control protein 37.9 67 0.0023 19.5 4.6 25 196-220 2-26 (33)
33 3m48_A General control protein 35.3 53 0.0018 19.9 3.7 27 196-229 2-28 (33)
34 3c3f_A Alpha/beta peptide with 34.3 80 0.0027 19.2 4.6 24 196-219 3-26 (34)
35 1fmh_A General control protein 32.8 78 0.0027 18.7 4.2 18 214-231 14-31 (33)
36 3ghg_A Fibrinogen alpha chain; 32.7 3.5E+02 0.012 26.2 11.6 25 194-218 131-155 (562)
37 1zke_A Hypothetical protein HP 32.0 41 0.0014 24.4 3.3 23 164-186 54-76 (83)
38 3he5_A Synzip1; heterodimeric 31.7 1E+02 0.0035 19.7 6.8 24 157-180 26-49 (49)
39 2dgc_A Protein (GCN4); basic d 31.5 1.2E+02 0.0042 20.6 6.8 30 195-231 31-60 (63)
40 1kd8_A GABH AIV, GCN4 acid bas 31.4 75 0.0026 19.6 4.0 26 196-221 3-28 (36)
41 3na7_A HP0958; flagellar bioge 30.7 2.5E+02 0.0085 23.8 12.8 65 164-231 99-166 (256)
42 2v66_B Nuclear distribution pr 29.9 1.9E+02 0.0064 22.2 12.4 64 158-221 6-69 (111)
43 2bni_A General control protein 29.4 83 0.0028 19.2 3.9 22 195-216 2-23 (34)
44 2v71_A Nuclear distribution pr 26.7 2.8E+02 0.0095 23.1 19.2 34 189-222 90-123 (189)
45 3m91_A Proteasome-associated A 26.5 1.4E+02 0.0048 19.7 6.8 42 194-235 9-50 (51)
46 2wt7_A Proto-oncogene protein 25.6 1.6E+02 0.0053 19.8 8.0 36 195-230 24-59 (63)
47 3lay_A Zinc resistance-associa 24.7 1.8E+02 0.0061 23.8 6.5 17 222-238 131-147 (175)
48 3ol1_A Vimentin; structural ge 24.5 2.3E+02 0.0079 21.4 11.8 15 119-133 16-30 (119)
49 1kd8_B GABH BLL, GCN4 acid bas 24.5 1.3E+02 0.0044 18.5 5.1 25 195-219 2-26 (36)
50 1hjb_A Ccaat/enhancer binding 23.9 2.1E+02 0.0073 20.8 8.1 36 195-230 37-72 (87)
51 1uuj_A Platelet-activating fac 22.7 34 0.0012 25.3 1.5 29 198-230 52-80 (88)
52 3he5_B Synzip2; heterodimeric 22.5 1.6E+02 0.0055 18.9 4.8 26 156-181 18-43 (52)
53 1k1f_A Breakpoint cluster regi 21.8 1.4E+02 0.0049 21.0 4.5 30 158-187 26-55 (72)
54 4emc_A Monopolin complex subun 20.7 3.4E+02 0.012 22.6 7.5 34 159-192 31-64 (190)
55 1nkp_B MAX protein, MYC proto- 20.5 1.7E+02 0.0058 20.5 5.0 21 161-181 53-73 (83)
56 2oxj_A Hybrid alpha/beta pepti 20.2 1.6E+02 0.0054 17.9 4.6 27 196-229 3-29 (34)
57 1jnm_A Proto-oncogene C-JUN; B 20.2 2E+02 0.0069 19.1 5.5 34 201-234 22-55 (62)
No 1
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=91.17 E-value=1.5 Score=29.21 Aligned_cols=44 Identities=23% Similarity=0.301 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 025332 193 AYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGW 236 (254)
Q Consensus 193 ~~~L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~~~~~~~~ 236 (254)
..++..|..-...++.++-+++--|.++|+||..|++=-..-|.
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkqHgl 46 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQNGL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcCC
Confidence 34677888889999999999999999999999999987666554
No 2
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=88.73 E-value=4.1 Score=33.90 Aligned_cols=73 Identities=16% Similarity=0.218 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 156 HNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRK 229 (254)
Q Consensus 156 ~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~ 229 (254)
+|+-...+.+.+...-..+|.+.|...+.|| .|+.....+..++..-.++..++-.++.+...|+.++..|+.
T Consensus 4 ~neKi~~LekQL~E~n~kLk~EsE~~~rlkK-~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa 76 (168)
T 3o0z_A 4 ANEKLSQLQKQLEEANDLLRTESDTAVRLRK-SHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQA 76 (168)
T ss_dssp ------CTHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555666666788899999999866 577888888899999999999998888888888888877665
No 3
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=86.95 E-value=2.1 Score=29.27 Aligned_cols=50 Identities=24% Similarity=0.258 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 025332 189 QQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGWNL 238 (254)
Q Consensus 189 Q~~~~~~L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~~~~~~~~~~ 238 (254)
++.+..++..|.+-=..++.|.-+++.-|.+.|+||.+|.+=-+.-|+.-
T Consensus 6 ktRse~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkqHgl~~ 55 (58)
T 3a2a_A 6 KTRSERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQHGLLG 55 (58)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 34455566677777788999999999999999999999999888877763
No 4
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=86.66 E-value=1.2 Score=28.23 Aligned_cols=35 Identities=14% Similarity=0.183 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 192 TAYELNALSTQWRELCAKNIEIQAACANIESHIEE 226 (254)
Q Consensus 192 ~~~~L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~ 226 (254)
...+++.|..++..+|.|+-.+|..+..||.+|..
T Consensus 4 EKe~mq~LNdrlAsyidkVR~LE~~N~~Le~~i~~ 38 (39)
T 1gk7_A 4 EKVELQELNDRFANYIDKVRFLEQQNKILLAELEQ 38 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35678899999999999999999999999998853
No 5
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=86.31 E-value=21 Score=33.03 Aligned_cols=82 Identities=12% Similarity=0.052 Sum_probs=53.6
Q ss_pred HHhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 144 LMSKHGPE-VWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIES 222 (254)
Q Consensus 144 LL~k~g~n-aW~~~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~lv~kn~eie~A~~~Le~ 222 (254)
+|.++..+ .+.-....|+.-+.++++.+..++++-..+|..=---| .+|+.+=.+...+.-|+|..+..|++
T Consensus 385 ~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (471)
T 3mq9_A 385 ARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALM-------ASLDAEKAQGQKKVEELEGEITTLNH 457 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44554433 34445566777788888888888888888887765555 44555555555666667777777777
Q ss_pred HHHHHHHHHH
Q 025332 223 HIEELRKEAA 232 (254)
Q Consensus 223 ei~~lk~~~~ 232 (254)
+++.++.+..
T Consensus 458 ~~~~~~~~~~ 467 (471)
T 3mq9_A 458 KLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666665543
No 6
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=84.91 E-value=9.5 Score=27.95 Aligned_cols=62 Identities=19% Similarity=0.261 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 162 ALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEA 231 (254)
Q Consensus 162 ~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~~~ 231 (254)
++...|+.++..+.---+++++.|--.+ .++.+-++.-.+|-++......|+.++++|+..+
T Consensus 14 eLQSALeaEIqAKQ~i~EELs~vr~~ni--------~~eskL~eae~rn~eL~~e~~~l~~~~eelq~~~ 75 (81)
T 1wt6_A 14 ELQEALEEEVLTRQSLSREMEAIRTDNQ--------NFASQLREAEARNRDLEAHVRQLQERMELLQAEG 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 5567788898888888888888865544 3445555666677777777788888888876543
No 7
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=83.75 E-value=8 Score=29.97 Aligned_cols=24 Identities=4% Similarity=0.152 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 166 GMQRLAQEQNEKIEAVNRERKYHQ 189 (254)
Q Consensus 166 ~le~~l~~~r~~ie~vN~~RK~~Q 189 (254)
.++..+..+|++|+.+...|-+-+
T Consensus 17 ~ye~~I~~LR~qid~~~~e~a~l~ 40 (119)
T 3ol1_A 17 LYEEEMRELRRQVDQLTNDKARVE 40 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555444433
No 8
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=77.45 E-value=5 Score=29.96 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 196 LNALSTQWRELCAKNIEIQAACANIESHIEELRK 229 (254)
Q Consensus 196 L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~ 229 (254)
|..|+.+...+|.|+-.+|.++..|+.+|..++.
T Consensus 11 mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~ 44 (93)
T 3s4r_A 11 LQELNDRFANLIDKVRFLEQQNKILLAELEQLKG 44 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445555555555555555555555555554443
No 9
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=72.49 E-value=56 Score=30.01 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025332 216 ACANIESHIEELRKEAA 232 (254)
Q Consensus 216 A~~~Le~ei~~lk~~~~ 232 (254)
-+.+||+||..+.++..
T Consensus 444 ~~~~~~~~~~~~~~~~~ 460 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQ 460 (471)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35566666666655543
No 10
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=72.43 E-value=32 Score=26.78 Aligned_cols=69 Identities=14% Similarity=0.218 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 161 EALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRK 229 (254)
Q Consensus 161 e~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~ 229 (254)
+.++.+|..++..++.+++.|-..-..........+..|+..-...=.-.-+.-+.|..|+.++..+++
T Consensus 14 D~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~ 82 (120)
T 3i00_A 14 DHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRR 82 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666555555555555555555555444322233334456666666666543
No 11
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=72.42 E-value=42 Score=35.22 Aligned_cols=69 Identities=12% Similarity=0.120 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 157 NQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIE 225 (254)
Q Consensus 157 n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~lv~kn~eie~A~~~Le~ei~ 225 (254)
+..+++....++++++.++++++..++..+..+.........|+.+=..+-.-|-.++.....|+..|.
T Consensus 979 ~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~ 1047 (1080)
T 2dfs_A 979 AKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIH 1047 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335667778888888888888888888877776665555455554444444444444444444443333
No 12
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=72.26 E-value=20 Score=28.08 Aligned_cols=49 Identities=18% Similarity=0.354 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 160 LEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCA 208 (254)
Q Consensus 160 Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~lv~ 208 (254)
|-.-...|++++..++++++.+....|.....-..+|..|=.+|+.-..
T Consensus 5 L~~~~~~L~~~i~~l~~~L~~lkqa~k~~~~~~~~eL~~LI~KWr~asq 53 (122)
T 3viq_A 5 LLSRRLKLEKEVRNLQEQLITAETARKVEAKNEDKDLQTLIQKWKNAAQ 53 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 3344566899999999999999999999999999999999999998544
No 13
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=68.44 E-value=18 Score=23.19 Aligned_cols=36 Identities=22% Similarity=0.330 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 196 LNALSTQWRELCAKNIEIQAACANIESHIEELRKEA 231 (254)
Q Consensus 196 L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~~~ 231 (254)
+..||.+-+++-.+|-++|.-+..|++|-.-||+..
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 567999999999999999999999999998888753
No 14
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=62.07 E-value=25 Score=34.18 Aligned_cols=36 Identities=11% Similarity=0.099 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 025332 121 WKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQ 158 (254)
Q Consensus 121 W~~al~na~aqLehq~~R~~NLELL~k~g~naW~~~n~ 158 (254)
.+..|.....-+...-.-+.| .+..+..+.+-++.+
T Consensus 51 LQglLdkqErDltkrINELKn--qLEdlsKnsKdseqy 86 (562)
T 3ghg_A 51 MKGLIDEVNQDFTNRINKLKN--SLFEYQKNNKDSHSL 86 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHTHHHHHHHHHHHH
T ss_pred hhhhHHhhcCcHHHHHHHHHH--HHHHHHhhchhHHHH
Confidence 356666665555555555554 556665555555443
No 15
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=59.14 E-value=30 Score=23.67 Aligned_cols=37 Identities=24% Similarity=0.316 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 194 YELNALSTQWRELCAKNIEIQAACANIESHIEELRKE 230 (254)
Q Consensus 194 ~~L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~~ 230 (254)
.....|+.+-.++-..|-+++.-+..|+.||..|+.-
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888899899999999999999999988753
No 16
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=56.87 E-value=32 Score=23.29 Aligned_cols=35 Identities=17% Similarity=0.368 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 195 ELNALSTQWRELCAKNIEIQAACANIESHIEELRK 229 (254)
Q Consensus 195 ~L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~ 229 (254)
.+..|+.+...+-..|-++...+..|+.|+..|+.
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777776666666666666665554
No 17
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=53.07 E-value=59 Score=23.58 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025332 213 IQAACANIESHIEELRKE 230 (254)
Q Consensus 213 ie~A~~~Le~ei~~lk~~ 230 (254)
.-.+...||++|+.|+.+
T Consensus 61 a~l~r~dLE~kvesL~eE 78 (86)
T 3swk_A 61 ASLARLDLERKVESLQEE 78 (86)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334445555566555554
No 18
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=52.90 E-value=48 Score=22.24 Aligned_cols=36 Identities=14% Similarity=0.257 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 195 ELNALSTQWRELCAKNIEIQAACANIESHIEELRKE 230 (254)
Q Consensus 195 ~L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~~ 230 (254)
....|+.+-..+-..|-++...+..|+.|+..|+..
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888999988999999999888764
No 19
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=51.86 E-value=74 Score=23.94 Aligned_cols=79 Identities=15% Similarity=0.131 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 025332 155 QHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQN---TAYELNALSTQWRELCAKNI-EIQAACANIESHIEELRKE 230 (254)
Q Consensus 155 ~~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~---~~~~L~~Le~~W~~lv~kn~-eie~A~~~Le~ei~~lk~~ 230 (254)
-...+|+.-+..++.++..+...+.+-...|...... ...+|..|...-.+--.+.+ .=..++..++..+.+|+.+
T Consensus 12 e~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~q 91 (97)
T 2eqb_B 12 EDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQ 91 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666655555543322 23444444444444333321 2234455556666666665
Q ss_pred HHH
Q 025332 231 AAE 233 (254)
Q Consensus 231 ~~~ 233 (254)
-.+
T Consensus 92 L~d 94 (97)
T 2eqb_B 92 LRE 94 (97)
T ss_dssp HHH
T ss_pred Hhh
Confidence 443
No 20
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=50.15 E-value=85 Score=24.12 Aligned_cols=67 Identities=12% Similarity=0.121 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
Q 025332 148 HGPEVWRQHNQRLE----ALLLGMQRLAQEQNEKIEAVNR-ERKYHQQN---------TAYELNALSTQWRELCAKNIEI 213 (254)
Q Consensus 148 ~g~naW~~~n~~Le----~~~~~le~~l~~~r~~ie~vN~-~RK~~Q~~---------~~~~L~~Le~~W~~lv~kn~ei 213 (254)
|-...|+.-..+.. .....|++++..++..-+.+-+ -|+..|.+ +...|..++.+...-|-+|.=+
T Consensus 17 ~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalL 96 (111)
T 2v66_B 17 YEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFL 96 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33466666433332 3455567777666666555533 35555543 2344555666666666555443
Q ss_pred H
Q 025332 214 Q 214 (254)
Q Consensus 214 e 214 (254)
|
T Consensus 97 E 97 (111)
T 2v66_B 97 E 97 (111)
T ss_dssp H
T ss_pred H
Confidence 3
No 21
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=49.64 E-value=84 Score=23.91 Aligned_cols=76 Identities=11% Similarity=0.075 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 154 RQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAE 233 (254)
Q Consensus 154 ~~~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~~~~~ 233 (254)
.+.|.+|++....+.=++.-+|..+++.--. +..+.+...+..+..-..-.+|..|..++..++.+-.+
T Consensus 15 MVsnAQLDNEKsal~YqVdlLKD~LEe~eE~-----------~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 15 MVSNAQLDNEKTNFMYQVDTLKDMLLELEEQ-----------LAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQ 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888888777765432 33344444444444455667888899999999998888
Q ss_pred cCCCCcC
Q 025332 234 SGWNLDI 240 (254)
Q Consensus 234 ~~~~~~~ 240 (254)
+.-+|+.
T Consensus 84 RD~LI~E 90 (103)
T 4h22_A 84 REEMLEP 90 (103)
T ss_dssp TTSCC--
T ss_pred HHHHHHH
Confidence 8877743
No 22
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=46.47 E-value=1.2e+02 Score=24.66 Aligned_cols=106 Identities=16% Similarity=0.158 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 025332 121 WKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQ---QNTAYELN 197 (254)
Q Consensus 121 W~~al~na~aqLehq~~R~~NLELL~k~g~naW~~~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q---~~~~~~L~ 197 (254)
..+.|..++..++-+..|+..||.+... ...+..-+...+.++..+..++.+-...|.... .....+|.
T Consensus 18 LeD~L~~~R~el~~~~~ri~~lE~~r~~--------~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElE 89 (154)
T 2ocy_A 18 LEEQLNKSLKTIASQKAAIENYNQLKED--------YNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVE 89 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHH--------HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666677777777765442 222222333444444444444443333332211 12234444
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHc
Q 025332 198 ALSTQWRELCAKNI-EIQAACANIESHIEELRKEAAES 234 (254)
Q Consensus 198 ~Le~~W~~lv~kn~-eie~A~~~Le~ei~~lk~~~~~~ 234 (254)
.|...-.+--++.+ .=..++..++..+.+|+.+-.+.
T Consensus 90 eLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~ 127 (154)
T 2ocy_A 90 DLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREK 127 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444443333321 22344555565566666654443
No 23
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=46.31 E-value=31 Score=21.13 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 195 ELNALSTQWRELCAKNIEIQAACANI 220 (254)
Q Consensus 195 ~L~~Le~~W~~lv~kn~eie~A~~~L 220 (254)
.+..||.+-.+++++|.+++....+|
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RL 27 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARI 27 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 35678999999999887765544443
No 24
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=45.03 E-value=90 Score=22.94 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 194 YELNALSTQWRELCAKNIEIQAACANIESHIEELRKE 230 (254)
Q Consensus 194 ~~L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~~ 230 (254)
..+..|...-.++...+..++..+..|..++.++|.+
T Consensus 56 ~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 56 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444444444444555555566666666654
No 25
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=44.99 E-value=33 Score=20.96 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 195 ELNALSTQWRELCAKNIEIQAACANIE 221 (254)
Q Consensus 195 ~L~~Le~~W~~lv~kn~eie~A~~~Le 221 (254)
++..||.+-.+++++|.+++.+..+|.
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~ 28 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLA 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 346788888888888877665544444
No 26
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=44.68 E-value=26 Score=20.50 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 158 QRLEALLLGMQRLAQEQNEKIEAVN 182 (254)
Q Consensus 158 ~~Le~~~~~le~~l~~~r~~ie~vN 182 (254)
++|.+++..++.+-+.++.+++++=
T Consensus 2 dqlnallasleaenkqlkakveell 26 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELL 26 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888877763
No 27
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=44.23 E-value=41 Score=26.85 Aligned_cols=104 Identities=16% Similarity=0.158 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q 025332 123 QALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQ---NTAYELNAL 199 (254)
Q Consensus 123 ~al~na~aqLehq~~R~~NLELL~k~g~naW~~~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~---~~~~~L~~L 199 (254)
+.|..++..+.-+..++..++.+... ...+..-+..++.++..+..++.+-...|...-. ....+|..|
T Consensus 8 d~L~~~r~~l~~~~~~~~~le~l~~~--------l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~L 79 (135)
T 2e7s_A 8 EQLNKSLKTIASQKAAIENYNQLKED--------YNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 79 (135)
T ss_dssp STTTHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666655442 1222222233444444444433333333332211 123444444
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHc
Q 025332 200 STQWRELCAKNI-EIQAACANIESHIEELRKEAAES 234 (254)
Q Consensus 200 e~~W~~lv~kn~-eie~A~~~Le~ei~~lk~~~~~~ 234 (254)
...-.+--++.+ .=..++..++..+.+|+++-.+.
T Consensus 80 TasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~ 115 (135)
T 2e7s_A 80 TASLFDEANNLVADARMEKYAIEILNKRLTEQLREK 115 (135)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444333322 11334455555566666654443
No 28
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=43.84 E-value=53 Score=19.93 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 196 LNALSTQWRELCAKNIEIQAACANI 220 (254)
Q Consensus 196 L~~Le~~W~~lv~kn~eie~A~~~L 220 (254)
+..||.+-.+++++|.+++.....|
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RL 26 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARI 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4678888899998887655443333
No 29
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=41.81 E-value=69 Score=20.69 Aligned_cols=36 Identities=28% Similarity=0.362 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 198 ALSTQWRELCAKNIEIQAACANIESHIEELRKEAAE 233 (254)
Q Consensus 198 ~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~~~~~ 233 (254)
+|..+-..+-..|+++|..-..||.-|..|+.+.+.
T Consensus 7 ylrkkiarlkkdnlqlerdeqnlekiianlrdeiar 42 (52)
T 3he5_B 7 YLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIAR 42 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHH
Confidence 455555556566777777666666666666655443
No 30
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=38.81 E-value=1.7e+02 Score=24.42 Aligned_cols=16 Identities=13% Similarity=0.273 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 025332 196 LNALSTQWRELCAKNI 211 (254)
Q Consensus 196 L~~Le~~W~~lv~kn~ 211 (254)
+..++.+....|-+|.
T Consensus 132 leD~e~kln~aiEr~a 147 (189)
T 2v71_A 132 LEDFEQRLNQAIERNA 147 (189)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 31
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=37.97 E-value=1.2e+02 Score=22.40 Aligned_cols=75 Identities=13% Similarity=0.178 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 156 HNQRLEALLLGMQRLAQEQNEKIEAVNRERKY----HQ---QNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELR 228 (254)
Q Consensus 156 ~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~----~Q---~~~~~~L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk 228 (254)
.+.++......+++.|...|..|+++++.=.. .+ ...-..|+.+......+-++.-+|-.....+..+-..++
T Consensus 6 P~~yF~~lv~~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke~Yl~~r 85 (93)
T 3t98_B 6 PADYFRVLVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLSYR 85 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888999999999999999999876222 22 245677888888899999988888888888888877777
Q ss_pred HH
Q 025332 229 KE 230 (254)
Q Consensus 229 ~~ 230 (254)
+.
T Consensus 86 r~ 87 (93)
T 3t98_B 86 KM 87 (93)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 32
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=37.90 E-value=67 Score=19.46 Aligned_cols=25 Identities=16% Similarity=0.065 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 196 LNALSTQWRELCAKNIEIQAACANI 220 (254)
Q Consensus 196 L~~Le~~W~~lv~kn~eie~A~~~L 220 (254)
+..||.+-.++++++.+++.....|
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl 26 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARN 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4678888888888887655443333
No 33
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=35.32 E-value=53 Score=19.94 Aligned_cols=27 Identities=30% Similarity=0.505 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 196 LNALSTQWRELCAKNIEIQAACANIESHIEELRK 229 (254)
Q Consensus 196 L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~ 229 (254)
+..||.+-.+++.+|.++ +.||..||.
T Consensus 2 M~QLE~kVEeLl~~n~~L-------e~EV~RLk~ 28 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNL-------ENEVARLKK 28 (33)
T ss_dssp -CHHHHHHHHHHHHHHHH-------HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHH-------HHHHHHHHH
Confidence 456888888888877654 455555543
No 34
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=34.31 E-value=80 Score=19.24 Aligned_cols=24 Identities=4% Similarity=0.065 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 196 LNALSTQWRELCAKNIEIQAACAN 219 (254)
Q Consensus 196 L~~Le~~W~~lv~kn~eie~A~~~ 219 (254)
+..||.+-.+++++|.+++.....
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~R 26 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXAR 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHH
Confidence 567888888888888665544333
No 35
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=32.83 E-value=78 Score=18.67 Aligned_cols=18 Identities=22% Similarity=0.403 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025332 214 QAACANIESHIEELRKEA 231 (254)
Q Consensus 214 e~A~~~Le~ei~~lk~~~ 231 (254)
|..+-+||.||.+|..+|
T Consensus 14 eaenyqleqevaqlehec 31 (33)
T 1fmh_A 14 EAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHhHHHHHHHHHHHhc
Confidence 334444555565555544
No 36
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=32.73 E-value=3.5e+02 Score=26.23 Aligned_cols=25 Identities=8% Similarity=0.064 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 194 YELNALSTQWRELCAKNIEIQAACA 218 (254)
Q Consensus 194 ~~L~~Le~~W~~lv~kn~eie~A~~ 218 (254)
..|+.|+..-.+++.+...+|+++.
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788888888887777776654
No 37
>1zke_A Hypothetical protein HP1531; layer of helix-turn-helix, structural G PSI, protein structure initiative, midwest center for struc genomics; 1.60A {Helicobacter pylori} SCOP: a.30.6.1
Probab=31.96 E-value=41 Score=24.40 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025332 164 LLGMQRLAQEQNEKIEAVNRERK 186 (254)
Q Consensus 164 ~~~le~~l~~~r~~ie~vN~~RK 186 (254)
..++..++.++|+.|+.+|+..|
T Consensus 54 ~~QideeV~~LKe~IdaLNK~Kk 76 (83)
T 1zke_A 54 FTQLSEEVERLKELINALNKIKK 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577888999999999999854
No 38
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=31.73 E-value=1e+02 Score=19.66 Aligned_cols=24 Identities=21% Similarity=0.255 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 157 NQRLEALLLGMQRLAQEQNEKIEA 180 (254)
Q Consensus 157 n~~Le~~~~~le~~l~~~r~~ie~ 180 (254)
|-+-..++.-+++++..+|+.|++
T Consensus 26 nlhkkdliaylekeianlrkkiee 49 (49)
T 3he5_A 26 NLHKKDLIAYLEKEIANLRKKIEE 49 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cccHHHHHHHHHHHHHHHHHHhcC
Confidence 334445666778888888887764
No 39
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=31.54 E-value=1.2e+02 Score=20.57 Aligned_cols=30 Identities=20% Similarity=0.330 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 195 ELNALSTQWRELCAKNIEIQAACANIESHIEELRKEA 231 (254)
Q Consensus 195 ~L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~~~ 231 (254)
.+..|+.+...+ +..+..|+.+|..|+...
T Consensus 31 ~~~~Le~~v~~L-------~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 31 RMKQLEDKVEEL-------LSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 345566655554 455566777777776653
No 40
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=31.39 E-value=75 Score=19.61 Aligned_cols=26 Identities=15% Similarity=0.285 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 196 LNALSTQWRELCAKNIEIQAACANIE 221 (254)
Q Consensus 196 L~~Le~~W~~lv~kn~eie~A~~~Le 221 (254)
+..||.+-.+++++|.+++....+|+
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~ 28 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLE 28 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45677777777777765544444433
No 41
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=30.67 E-value=2.5e+02 Score=23.82 Aligned_cols=65 Identities=18% Similarity=0.145 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 164 LLGMQRLAQEQNEKIEAVNRERKYHQ---QNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEA 231 (254)
Q Consensus 164 ~~~le~~l~~~r~~ie~vN~~RK~~Q---~~~~~~L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~~~ 231 (254)
+..++..+..+..+|.++.......+ ......+..++...... .-+++.+...++.++..+..+.
T Consensus 99 ie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~---~~~~~~~~~e~~~e~~~l~~~r 166 (256)
T 3na7_A 99 EDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALEL---ESLVENEVKNIKETQQIIFKKK 166 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555554443322 23334444444444433 3455666667777776665443
No 42
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=29.92 E-value=1.9e+02 Score=22.16 Aligned_cols=64 Identities=16% Similarity=0.085 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 158 QRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIE 221 (254)
Q Consensus 158 ~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~lv~kn~eie~A~~~Le 221 (254)
..|..-..+|..++...|.+.+.....--..+.....++..|...=..+..+.-++|+++-.||
T Consensus 6 rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLE 69 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLE 69 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 3455555666666666666666655554455555555555555555555555556666655555
No 43
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=29.36 E-value=83 Score=19.19 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025332 195 ELNALSTQWRELCAKNIEIQAA 216 (254)
Q Consensus 195 ~L~~Le~~W~~lv~kn~eie~A 216 (254)
.+..||.+-.+++++|-+++..
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~E 23 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNE 23 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHH
Confidence 3567888888888888665443
No 44
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=26.75 E-value=2.8e+02 Score=23.12 Aligned_cols=34 Identities=15% Similarity=0.079 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 189 QQNTAYELNALSTQWRELCAKNIEIQAACANIES 222 (254)
Q Consensus 189 Q~~~~~~L~~Le~~W~~lv~kn~eie~A~~~Le~ 222 (254)
+.....++..|...-..+-.+..++|+++-.||.
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr 123 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLER 123 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3333444444444444444445555555555543
No 45
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=26.48 E-value=1.4e+02 Score=19.66 Aligned_cols=42 Identities=19% Similarity=0.339 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 025332 194 YELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESG 235 (254)
Q Consensus 194 ~~L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~~~~~~~ 235 (254)
.++..|..+=..+-.+|-.+..++..-+.+|..|+.+-.+++
T Consensus 9 ~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445566777777777888888888888888888888765543
No 46
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=25.61 E-value=1.6e+02 Score=19.84 Aligned_cols=36 Identities=19% Similarity=0.158 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 195 ELNALSTQWRELCAKNIEIQAACANIESHIEELRKE 230 (254)
Q Consensus 195 ~L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~~ 230 (254)
.+..|+.+...+-..|-++...+..|+.|+..|+..
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888888888888888888888754
No 47
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=24.72 E-value=1.8e+02 Score=23.85 Aligned_cols=17 Identities=12% Similarity=0.008 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHcCCCC
Q 025332 222 SHIEELRKEAAESGWNL 238 (254)
Q Consensus 222 ~ei~~lk~~~~~~~~~~ 238 (254)
.+-.+.+.+.++.||+.
T Consensus 131 ~~R~k~~~em~KeGip~ 147 (175)
T 3lay_A 131 EQRVKRDVAMAQAGIPR 147 (175)
T ss_dssp HHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 33344445666669986
No 48
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=24.48 E-value=2.3e+02 Score=21.44 Aligned_cols=15 Identities=7% Similarity=0.337 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHH
Q 025332 119 SAWKQALQKAQRLSQ 133 (254)
Q Consensus 119 ~aW~~al~na~aqLe 133 (254)
..+..-+..++.++.
T Consensus 16 ~~ye~~I~~LR~qid 30 (119)
T 3ol1_A 16 DLYEEEMRELRRQVD 30 (119)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334455555555543
No 49
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=24.46 E-value=1.3e+02 Score=18.53 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 195 ELNALSTQWRELCAKNIEIQAACAN 219 (254)
Q Consensus 195 ~L~~Le~~W~~lv~kn~eie~A~~~ 219 (254)
++..||.+-.++++++.+++....+
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~R 26 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVAR 26 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHH
Confidence 3567888888888888665444333
No 50
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=23.86 E-value=2.1e+02 Score=20.80 Aligned_cols=36 Identities=19% Similarity=0.188 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 195 ELNALSTQWRELCAKNIEIQAACANIESHIEELRKE 230 (254)
Q Consensus 195 ~L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~~ 230 (254)
.-..++.+...+-..|..+..-+..|+.|+..|+.-
T Consensus 37 r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~l 72 (87)
T 1hjb_A 37 RNLETQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566666777777777777777777777777654
No 51
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=22.66 E-value=34 Score=25.31 Aligned_cols=29 Identities=24% Similarity=0.548 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 198 ALSTQWRELCAKNIEIQAACANIESHIEELRKE 230 (254)
Q Consensus 198 ~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~~ 230 (254)
-||++|..-| -+..-+..||.++..++.+
T Consensus 52 LLEKKWTSVi----RLQKKImdLE~~~~~l~~e 80 (88)
T 1uuj_A 52 LLEKKWTSVI----RLQKKVMELESKLNEAKEE 80 (88)
T ss_dssp HHHHHHTCHH----HHHHHHHHHHHHHHHTTC-
T ss_pred hhhhhHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 4999998644 4555555666555555544
No 52
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=22.53 E-value=1.6e+02 Score=18.92 Aligned_cols=26 Identities=15% Similarity=0.268 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 156 HNQRLEALLLGMQRLAQEQNEKIEAV 181 (254)
Q Consensus 156 ~n~~Le~~~~~le~~l~~~r~~ie~v 181 (254)
.|-+|+.-.+.|++-+..+|.+|-.+
T Consensus 18 dnlqlerdeqnlekiianlrdeiarl 43 (52)
T 3he5_B 18 DNLQLERDEQNLEKIIANLRDEIARL 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHhhHHHHHHHHHHHHHHH
Confidence 44566666677777777777776554
No 53
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=21.84 E-value=1.4e+02 Score=20.95 Aligned_cols=30 Identities=17% Similarity=0.166 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 158 QRLEALLLGMQRLAQEQNEKIEAVNRERKY 187 (254)
Q Consensus 158 ~~Le~~~~~le~~l~~~r~~ie~vN~~RK~ 187 (254)
..+..+...|++.-..+|+--++||+.|=+
T Consensus 26 ~~vgdiEqeLe~Ck~sIrrLE~evn~ErFr 55 (72)
T 1k1f_A 26 RSVGDIEQELERAKASIRRLEQEVNQERFR 55 (72)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 356777778888888888888999998854
No 54
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=20.67 E-value=3.4e+02 Score=22.65 Aligned_cols=34 Identities=18% Similarity=0.143 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 159 RLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNT 192 (254)
Q Consensus 159 ~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~ 192 (254)
.|...+...+.+++.++++++.++...+..|...
T Consensus 31 ~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~ 64 (190)
T 4emc_A 31 VLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQT 64 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 3344444556666666666666666665444433
No 55
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=20.52 E-value=1.7e+02 Score=20.49 Aligned_cols=21 Identities=5% Similarity=-0.119 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025332 161 EALLLGMQRLAQEQNEKIEAV 181 (254)
Q Consensus 161 e~~~~~le~~l~~~r~~ie~v 181 (254)
......++.++..++++++.+
T Consensus 53 ~~~~~~l~~e~~~L~~~~~~L 73 (83)
T 1nkp_B 53 RRKNHTHQQDIDDLKRQNALL 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444
No 56
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=20.19 E-value=1.6e+02 Score=17.92 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 196 LNALSTQWRELCAKNIEIQAACANIESHIEELRK 229 (254)
Q Consensus 196 L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~ 229 (254)
+..||.+-.+++.+|-+ |+.||.+||.
T Consensus 3 MnQLE~kVEeLl~~n~~-------Le~eV~rLk~ 29 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXH-------LEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhh-------HHHHHHHHHH
Confidence 56788888888887755 4555655553
No 57
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=20.15 E-value=2e+02 Score=19.11 Aligned_cols=34 Identities=21% Similarity=0.221 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 025332 201 TQWRELCAKNIEIQAACANIESHIEELRKEAAES 234 (254)
Q Consensus 201 ~~W~~lv~kn~eie~A~~~Le~ei~~lk~~~~~~ 234 (254)
....++-.+.-+++..+..|..+|..|+.+...+
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677888889999999999999887664
Done!