Query 025332
Match_columns 254
No_of_seqs 110 out of 198
Neff 6.0
Searched_HMMs 13730
Date Mon Mar 25 08:12:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025332.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025332hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1hcia4 a.7.1.1 (A:633-746) al 45.8 15 0.0011 25.3 5.0 56 166-224 48-110 (114)
2 d1u5pa2 a.7.1.1 (A:1772-1872) 39.4 44 0.0032 21.6 6.6 51 160-210 43-93 (101)
3 d1s35a2 a.7.1.1 (A:1169-1273) 35.4 55 0.004 21.5 7.4 51 160-210 45-95 (105)
4 d1zkea1 a.30.6.1 (A:1-79) Hypo 33.2 18 0.0013 24.3 3.3 23 164-186 52-74 (79)
5 d1uuja_ a.221.1.1 (A:) Lissenc 27.2 17 0.0012 24.5 2.3 26 198-227 49-74 (76)
6 d1cuna2 a.7.1.1 (A:116-219) Sp 27.1 77 0.0056 20.6 7.6 23 188-210 70-92 (104)
7 d1qvra2 c.37.1.20 (A:149-535) 22.4 2.1E+02 0.015 23.9 11.1 15 194-208 296-310 (387)
8 d1lvfa_ a.47.2.1 (A:) Syntaxin 21.1 77 0.0056 21.8 5.2 23 210-232 44-66 (106)
9 d2cp8a1 a.5.2.1 (A:8-48) Migra 20.4 32 0.0024 20.3 2.4 22 137-158 16-37 (41)
10 d1u5pa1 a.7.1.1 (A:1662-1771) 19.5 97 0.0071 20.2 5.4 22 189-210 76-97 (110)
No 1
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.83 E-value=15 Score=25.25 Aligned_cols=56 Identities=13% Similarity=0.292 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 166 GMQRLAQEQNEKIEAVNRERKYH-------QQNTAYELNALSTQWRELCAKNIEIQAACANIESHI 224 (254)
Q Consensus 166 ~le~~l~~~r~~ie~vN~~RK~~-------Q~~~~~~L~~Le~~W~~lv~kn~eie~A~~~Le~ei 224 (254)
.+++++......|+.|+..-+.- ......++..|..+|..+....-+.. ..|+.+|
T Consensus 48 ~~e~el~~~~~~i~~l~~~g~~L~~~~~~~~~~i~~~~~~L~~~W~~L~~~~~~R~---~~Le~~i 110 (114)
T d1hcia4 48 QYEHNIINYKNNIDKLEGDHQLIQEALVFDNKHTNYTMEHIRVGWELLLTTIARTI---NEVETQI 110 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTCSCHHHHHHHHHHHHHHHHHHHH---HHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 35555555555555555444333 33456789999999999987654432 3445443
No 2
>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=39.39 E-value=44 Score=21.64 Aligned_cols=51 Identities=18% Similarity=0.229 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 160 LEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKN 210 (254)
Q Consensus 160 Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~lv~kn 210 (254)
++..+...+..+..+....+.+-.............+..|..+|..+....
T Consensus 43 ~~~~i~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~~~~l~~~w~~L~~~~ 93 (101)
T d1u5pa2 43 LEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLA 93 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555555544444455567788888999999886543
No 3
>d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.38 E-value=55 Score=21.47 Aligned_cols=51 Identities=6% Similarity=-0.006 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 160 LEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKN 210 (254)
Q Consensus 160 Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~lv~kn 210 (254)
|+..+...+..+..+...-+.+-...-.....+..++..|..+|..+....
T Consensus 45 l~~~l~~~~~~v~~l~~~a~~L~~~~~~~~~~I~~~~~~l~~rw~~l~~~~ 95 (105)
T d1s35a2 45 FLGSMENNRDKVLSPVDSGNKLVAEGNLYSDKIKEKVQLIEDRHRKNNEKA 95 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444433333445567788888999999886544
No 4
>d1zkea1 a.30.6.1 (A:1-79) Hypothetical protein HP1531 {Helicobacter pylori [TaxId: 210]}
Probab=33.21 E-value=18 Score=24.28 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025332 164 LLGMQRLAQEQNEKIEAVNRERK 186 (254)
Q Consensus 164 ~~~le~~l~~~r~~ie~vN~~RK 186 (254)
+.++..++.++|++|+.+|+-.|
T Consensus 52 l~qid~ev~kLK~~IdaLNKiKk 74 (79)
T d1zkea1 52 FTQLSEEVERLKELINALNKIKK 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999998754
No 5
>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=27.20 E-value=17 Score=24.54 Aligned_cols=26 Identities=27% Similarity=0.529 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332 198 ALSTQWRELCAKNIEIQAACANIESHIEEL 227 (254)
Q Consensus 198 ~Le~~W~~lv~kn~eie~A~~~Le~ei~~l 227 (254)
-||++|.. ++-+..-+..||.++.++
T Consensus 49 lLEKKWtS----ViRLQkKImdLE~~~~~l 74 (76)
T d1uuja_ 49 LLEKKWTS----VIRLQKKVMELESKLNEA 74 (76)
T ss_dssp HHHHHHTC----HHHHHHHHHHHHHHHHHT
T ss_pred cchhHHHH----HHHHHHHHHHHHHHHHHh
Confidence 49999965 344556666666666554
No 6
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=27.13 E-value=77 Score=20.60 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025332 188 HQQNTAYELNALSTQWRELCAKN 210 (254)
Q Consensus 188 ~Q~~~~~~L~~Le~~W~~lv~kn 210 (254)
........+..|+.+|..+....
T Consensus 70 ~~~~I~~~~~~l~~~w~~L~~~~ 92 (104)
T d1cuna2 70 HVENITAKMKGLKGKVSDLEKAA 92 (104)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777888999998886543
No 7
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=22.37 E-value=2.1e+02 Score=23.90 Aligned_cols=15 Identities=20% Similarity=0.426 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHH
Q 025332 194 YELNALSTQWRELCA 208 (254)
Q Consensus 194 ~~L~~Le~~W~~lv~ 208 (254)
.++..|+.+|.....
T Consensus 296 e~~~~L~~~w~~ek~ 310 (387)
T d1qvra2 296 EEIAKLRAEWERERE 310 (387)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 455667777776543
No 8
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=21.11 E-value=77 Score=21.78 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025332 210 NIEIQAACANIESHIEELRKEAA 232 (254)
Q Consensus 210 n~eie~A~~~Le~ei~~lk~~~~ 232 (254)
.-++..+|..++-++.+|.+.-.
T Consensus 44 ~~eL~~~l~siewdL~dLe~av~ 66 (106)
T d1lvfa_ 44 TNELRNNLRSIEWDLEDLDETIS 66 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Confidence 45778888889988888887533
No 9
>d2cp8a1 a.5.2.1 (A:8-48) Migration-inducing protein 19 NBR1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.41 E-value=32 Score=20.33 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=16.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHHH
Q 025332 137 IRLENLELMSKHGPEVWRQHNQ 158 (254)
Q Consensus 137 ~R~~NLELL~k~g~naW~~~n~ 158 (254)
-|..|+.||.||.-|.-.+-++
T Consensus 16 DR~lNq~LL~KH~~nl~~vV~e 37 (41)
T d2cp8a1 16 DRQLNLRLLKKHNYNILQVVTE 37 (41)
T ss_dssp CHHHHHHHHTTTTTCHHHHHHH
T ss_pred hhHHHHHHHHHccCcHHHHHHH
Confidence 4778999999998776555444
No 10
>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=19.47 E-value=97 Score=20.16 Aligned_cols=22 Identities=0% Similarity=0.111 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025332 189 QQNTAYELNALSTQWRELCAKN 210 (254)
Q Consensus 189 Q~~~~~~L~~Le~~W~~lv~kn 210 (254)
.......+..|..+|.++....
T Consensus 76 ~~~i~~~~~~l~~~w~~l~~~~ 97 (110)
T d1u5pa1 76 TSQVKDKRETINGRFQRIKSMA 97 (110)
T ss_dssp THHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777888888775543
Done!