BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025333
(254 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XIO|A Chain A, Structure Of Putative Deoxyribonuclease Tatdn1 Isoform A
Length = 301
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 98/217 (45%), Gaps = 34/217 (15%)
Query: 31 AAAVGEIGLDKGSKGREIDFM---DQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMK 87
A+GE GLD + F Q+ F +Q EL+++ K P +HC + + L+I K
Sbjct: 104 VVAIGECGLDFD----RLQFCPKDTQLKYFEKQFELSEQTKLPMFLHCRNSHAEFLDITK 159
Query: 88 SVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQKAKKMLKVVPSERILLE 147
G ++HS+ G+ E L L Y F+G S+K + ++LK +PSE++++E
Sbjct: 160 RNRDRCVGGVVHSFDGTKEAAAALIDLDLYIGFNG--CSLKTEANLEVLKSIPSEKLMIE 217
Query: 148 TDAP-DALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKET 206
TDAP + S ++ P+ + S H KD
Sbjct: 218 TDAPWCGVKSTHAGSKYIRTAFPTKKKWESG----------------HCLKDR------- 254
Query: 207 LNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLF 243
N P +I +L+ ++++ D ELA Y N I++F
Sbjct: 255 -NEPCHIIQILEIMSAVRDEDPLELANTLYNNTIKVF 290
>pdb|1YIX|A Chain A, Crystal Structure Of Ycfh, Tatd Homolog From Escherichia
Coli K12, At 1.9 A Resolution
pdb|1YIX|B Chain B, Crystal Structure Of Ycfh, Tatd Homolog From Escherichia
Coli K12, At 1.9 A Resolution
Length = 265
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 94/222 (42%), Gaps = 55/222 (24%)
Query: 33 AVGEIGLDK----GSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKS 88
A+GE GLD +K R Q F +++ +EL +P +H A D L I++
Sbjct: 91 ALGETGLDYYYTPETKVR------QQESFIHHIQIGRELNKPVIVHTRDARADTLAILRE 144
Query: 89 VGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQKAKKMLKVVPSERILLET 148
G ++H + E +L LG Y SFSG + A++ + + VP +R+L+ET
Sbjct: 145 EKVTDCGGVLHCFTEDRETAGKLLDLGFYISFSGIVTFRNAEQLRDAARYVPLDRLLVET 204
Query: 149 DAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLN 208
D+P P P+ G KE N
Sbjct: 205 DSPYLAP--------------------------VPHRG-----------------KE--N 219
Query: 209 HPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEGSKI 250
PA + +V +Y+A L + EELA+++ N RLF + S++
Sbjct: 220 QPAMVRDVAEYMAVLKGVAVEELAQVTTDNFARLFHIDASRL 261
>pdb|2GZX|A Chain A, Crystal Structure Of The Tatd Deoxyribonuclease Mw0446
From Staphylococcus Aureus. Northeast Structural
Genomics Consortium Target Zr237.
pdb|2GZX|B Chain B, Crystal Structure Of The Tatd Deoxyribonuclease Mw0446
From Staphylococcus Aureus. Northeast Structural
Genomics Consortium Target Zr237
Length = 265
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 95/228 (41%), Gaps = 51/228 (22%)
Query: 18 WFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVR 77
W +L + ++ +GE GLD D Q VFR+Q+ LAK LK P IH
Sbjct: 77 WIESLAQHPKVI---GIGEXGLDYHWDKSPADV--QKEVFRKQIALAKRLKLPIIIHNRE 131
Query: 78 AFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELS-KLGAYFSFSGFLMSMKAQKAKKML 136
A D ++I+ G I HS+ GS E+ ++ KL Y S G + A++ K++
Sbjct: 132 ATQDCIDILLEEHAEEVGGIXHSFSGSPEIADIVTNKLNFYISLGGPVTFKNAKQPKEVA 191
Query: 137 KVVPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHAS 196
K V ER+L+ETDAP P P G
Sbjct: 192 KHVSXERLLVETDAPYLSP--------------------------HPYRGKR-------- 217
Query: 197 KDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFS 244
N PA + V + +A L ++ EE+ E + +NA +LF+
Sbjct: 218 -----------NEPARVTLVAEQIAELKGLSYEEVCEQTTKNAEKLFN 254
>pdb|1XWY|A Chain A, Crystal Structure Of Tatd Deoxyribonuclease From
Escherichia Coli K12 At 2.0 A Resolution
Length = 264
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 67/128 (52%), Gaps = 9/128 (7%)
Query: 33 AVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPF 92
A+GE GLD + +Q F QL +A +L P +HC A + +++ P+
Sbjct: 92 AIGECGLDFNRNFSTPE--EQERAFVAQLRIAADLNMPVFMHCRDAHERFMTLLE---PW 146
Query: 93 PD---GVIIHSYLGSAEMVPELSKLGAYFSFSGFLMS-MKAQKAKKMLKVVPSERILLET 148
D G ++H + G+ E + G Y +G++ + + +++L ++P+E++L+ET
Sbjct: 147 LDKLPGAVLHCFTGTREEMQACVAHGIYIGITGWVCDERRGLELRELLPLIPAEKLLIET 206
Query: 149 DAPDALPK 156
DAP LP+
Sbjct: 207 DAPYLLPR 214
>pdb|1ZZM|A Chain A, Crystal Structure Of Yjjv, Tatd Homolog From Escherichia
Coli K12, At 1.8 A Resolution
Length = 259
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 73/155 (47%), Gaps = 12/155 (7%)
Query: 22 LKEFFEITPA--AAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAF 79
L++ E PA AVGEIGLD G + F Q + +QL+LAK P +H R
Sbjct: 81 LQQALERRPAKVVAVGEIGLD--LFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRRTH 138
Query: 80 GDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQKAKKMLKVV 139
D L + P ++H + GS + +LG G + +A K + ++ +
Sbjct: 139 -DKLAMHLKRHDLPRTGVVHGFSGSLQQAERFVQLGYKIGVGGTITYPRASKTRDVIAKL 197
Query: 140 PSERILLETDAPDALPKAELNSLFLVDGDPSLPQE 174
P +LLETDAPD +P LN G P+ P++
Sbjct: 198 PLASLLLETDAPD-MP---LNGF---QGQPNRPEQ 225
>pdb|3GG7|A Chain A, Crystal Structure Of An Uncharacterized Metalloprotein
From Deinococcus Radiodurans
Length = 254
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 72/149 (48%), Gaps = 17/149 (11%)
Query: 34 VGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELK-RPASIHCVRAFGDLLEIMKSVGPF 92
VGE+GLD GS + Q VF+ L ++ R SIH RA ++L +++ P
Sbjct: 84 VGEVGLD-GSPSLRGTWTQQFAVFQHILRRCEDHGGRILSIHSRRAESEVLNCLEA-NPR 141
Query: 93 PDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQKAKKMLKVVPSERILLETDAPD 152
I+H Y GS + LG +FS ++ + QK +++ +P +R+L ETD P
Sbjct: 142 SGTPILHWYSGSVTELRRAISLGCWFSVGPTMV--RTQKGAALIRSMPRDRVLTETDGP- 198
Query: 153 ALPKAELNSLFL-VDGDPSLPQELSAKEE 180
FL +DG +LP ++ + E
Sbjct: 199 ----------FLELDGQAALPWDVKSVVE 217
>pdb|2Y1H|A Chain A, Crystal Structure Of The Human Tatd-Domain Protein 3
(Tatdn3)
pdb|2Y1H|B Chain B, Crystal Structure Of The Human Tatd-Domain Protein 3
(Tatdn3)
Length = 272
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 93/213 (43%), Gaps = 53/213 (24%)
Query: 33 AVGEIGLDKGSK--GREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVG 90
A+GE+GLD + G +Q V +Q++LAK L P ++H A + +++ G
Sbjct: 102 AIGEVGLDFSPRFAGTGEQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQEQG 161
Query: 91 PFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQKAKKMLKVVPSERILLETDA 150
+ V++H++ G + E + G +FS ++ ++ + +K++K +P I LETD+
Sbjct: 162 A--EKVLLHAFDGRPSVAMEGVRAGYFFSIPPSII--RSGQKQKLVKQLPLTSICLETDS 217
Query: 151 PDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHP 210
P P+ K+ N P
Sbjct: 218 PALGPE-----------------------------------------------KQVRNEP 230
Query: 211 ANIHNVLDYVASLLDMTKEELAELSYRNAIRLF 243
NI +Y+A + ++ EE+ E++ +NA++LF
Sbjct: 231 WNISISAEYIAQVKGISVEEVIEVTTQNALKLF 263
>pdb|1J6O|A Chain A, Crystal Structure Of Tatd-related Deoxyribonuclease
(tm0667) From Thermotoga Maritima At 1.8 A Resolution
Length = 268
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 6/142 (4%)
Query: 12 QERTPNWFSTLKEFFEITPAAAVGEIGLD--KGSKGREIDFMDQVGVFRQQLELAKELKR 69
+E ++ L++F + A+GE GLD + E+ Q VF +Q+ELA +L
Sbjct: 79 KEVPEDFIEHLEKFAKDEKVVAIGETGLDFFRNISPAEV----QKRVFVEQIELAGKLNL 134
Query: 70 PASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKA 129
P +H A+ + EI+++ +IH++ E + LG G + K
Sbjct: 135 PLVVHIRDAYSEAYEILRTESLPEKRGVIHAFSSDYEWAKKFIDLGFLLGIGGPVTYPKN 194
Query: 130 QKAKKMLKVVPSERILLETDAP 151
+ ++++K V E I+LETD P
Sbjct: 195 EALREVVKRVGLEYIVLETDCP 216
>pdb|3RCM|A Chain A, Crystal Structure Of Efi Target 500140:tatd Family
Hydrolase From Pseudomonas Putida
Length = 287
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 9/129 (6%)
Query: 33 AVGEIGLDKGSKGREIDFMD---QVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSV 89
AVGE GLD DF Q QL LA +L+ P +H A LL I+K
Sbjct: 94 AVGECGLDFNR-----DFSPRPLQEKALEAQLTLAAQLRLPVFLHERDASERLLAILKDY 148
Query: 90 GPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMS-MKAQKAKKMLKVVPSERILLET 148
G ++H + G E + L + +G++ + ++ +P R+ LE+
Sbjct: 149 RDHLTGAVVHCFTGEREALFAYLDLDLHIGITGWICDERRGTHLHPLVGNIPEGRLXLES 208
Query: 149 DAPDALPKA 157
DAP LP++
Sbjct: 209 DAPYLLPRS 217
>pdb|3IPW|A Chain A, Crystal Structure Of Hydrolase Tatd Family Protein From
Entamoeba Histolytica
Length = 325
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 63/128 (49%), Gaps = 10/128 (7%)
Query: 28 ITPAAAVGEIGLDKGSKGREIDFMD---QVGVFRQQLELAKELKR-PASIHCVRAFGDLL 83
I A+GEIGLD + F D Q+ +R L ++ P HC +++ DL
Sbjct: 128 IDKVVAIGEIGLDY----ERLQFSDKETQLSGYRTLSILHQKYPYLPFFFHCRKSWSDLC 183
Query: 84 EIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQKAKKMLKVVPSER 143
++ K +G ++H + G+ E + ++ G +G S+++ + ++K +P ER
Sbjct: 184 QLNKELGYNGCKGVVHCFDGTEEEMNQILNEGWDIGVTG--NSLQSIELLNVMKQIPIER 241
Query: 144 ILLETDAP 151
+ +ETD P
Sbjct: 242 LHIETDCP 249
>pdb|3E2V|A Chain A, Crystal Structure Of An Uncharacterized Amidohydrolase
From Saccharomyces Cerevisiae
pdb|3E2V|B Chain B, Crystal Structure Of An Uncharacterized Amidohydrolase
From Saccharomyces Cerevisiae
Length = 401
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 107/262 (40%), Gaps = 47/262 (17%)
Query: 22 LKEFFEI---------TPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELA----KELK 68
LKE +++ T ++GEIGLD M +V F +QL+++ K
Sbjct: 138 LKELYDLMNQQAKPHDTSFRSIGEIGLDYDRFHYSSKEMQKV-FFEEQLKISCLNDKLSS 196
Query: 69 RPASIHCVRAFGDLLEIMK----------------------SVGPF---PD-GVIIHSYL 102
P +H A D ++I++ S G + PD +++HS+
Sbjct: 197 YPLFLHMRSACDDFVQILERFVVGFTDEKDTFQLQKLGASSSSGFYKFHPDRKLVVHSFT 256
Query: 103 GSAEMVPELSKLGAYFSFSGFLMSMKAQKAKKMLKVVPSERILLETDAPDALPKAELNSL 162
GSA + +L L S++ ++ ++K +P+ER+LLETDAP K S
Sbjct: 257 GSAIDLQKLLNLSPNIFIGVNGCSLRTEENLAVVKQIPTERLLLETDAPWCEIKRTHASF 316
Query: 163 FLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPK-ETLNHPANIHNVLDYVA 221
L + ++ P S N+ ++ L + N P N+ V V+
Sbjct: 317 ------QYLAKYQEVRDFEYPAFKSVKKNKLADKLNAEELYMVKGRNEPCNMEQVAIVVS 370
Query: 222 SLLDMTKEELAELSYRNAIRLF 243
+ D+ L + +++ ++F
Sbjct: 371 EVKDVDLATLIDTTWKTTCKIF 392
>pdb|3GUW|A Chain A, Crystal Structure Of The Tatd-Like Protein (Af1765) From
Archaeoglobus Fulgidus, Northeast Structural Genomics
Consortium Target Gr121
pdb|3GUW|B Chain B, Crystal Structure Of The Tatd-Like Protein (Af1765) From
Archaeoglobus Fulgidus, Northeast Structural Genomics
Consortium Target Gr121
pdb|3GUW|C Chain C, Crystal Structure Of The Tatd-Like Protein (Af1765) From
Archaeoglobus Fulgidus, Northeast Structural Genomics
Consortium Target Gr121
pdb|3GUW|D Chain D, Crystal Structure Of The Tatd-Like Protein (Af1765) From
Archaeoglobus Fulgidus, Northeast Structural Genomics
Consortium Target Gr121
Length = 261
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 54/124 (43%), Gaps = 16/124 (12%)
Query: 33 AVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVR-----AFGDLLEIMK 87
A GEIGL E+ +++ V + QLELAK P IH R A LEI++
Sbjct: 95 AFGEIGL-------ELVTDEEIEVLKSQLELAKRXDVPCIIHTPRGNKLKATRKTLEILE 147
Query: 88 SVG-PFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQKAKKMLKVVPSERILL 146
S+ P VI H + + V E + + + A+ A +++ ER L
Sbjct: 148 SLDFPADLAVIDHVNFETLDXVLETE---YWIGLTVQPGKLSAEDAARIVAEHGPERFXL 204
Query: 147 ETDA 150
+DA
Sbjct: 205 NSDA 208
>pdb|2GS9|A Chain A, Crystal Structure Of Tt1324 From Thermus Thermophilis
Hb8
pdb|2GS9|B Chain B, Crystal Structure Of Tt1324 From Thermus Thermophilis
Hb8
Length = 211
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 28 ITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMK 87
+ P ++ E+G G R + + +VGV + LA +R VRA+G+ L
Sbjct: 34 LPPGESLLEVGAGTGYWLRRLPYPQKVGVEPSEAXLAVGRRRAPEATWVRAWGEAL---- 89
Query: 88 SVGPFP 93
PFP
Sbjct: 90 ---PFP 92
>pdb|3CJW|A Chain A, Crystal Structure Of The Human Coup-Tfii Ligand Binding
Domain
Length = 244
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 26 FEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELK-RPASIHCVRAF 79
+ P A + S R + FMD + +F++Q+E K L A C++A
Sbjct: 94 LHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAI 148
>pdb|1QMR|A Chain A, Birch Pollen Allergen Bet V 1 Mutant N28t, K32q, E45s,
P108g
Length = 159
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 147 ETDAPDALPKAELNSLFLVDGD---PSL-PQELSAKEEHSPNVGSAS 189
ET+ +P A L F++DGD P + PQ +S+ E S N G +
Sbjct: 6 ETETTSVIPAARLFKAFILDGDTLFPQVAPQAISSVENISGNGGPGT 52
>pdb|1LLT|A Chain A, Birch Pollen Allergen Bet V 1 Mutant E45s
Length = 159
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 147 ETDAPDALPKAELNSLFLVDGD---PSL-PQELSAKEEHSPNVGSAS 189
ET+ +P A L F++DGD P + PQ +S+ E S N G +
Sbjct: 6 ETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENISGNGGPGT 52
>pdb|4A8U|A Chain A, Crystal Structure Of Native Birch Pollen Allergen Bet V 1
Isoform J
pdb|4A8V|A Chain A, Crystal Structure Of Birch Pollen Allergen Bet V 1 Isoform
J In Complex With 8-Anilinonaphthalene-1-Sulfonate (Ans)
Length = 159
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 147 ETDAPDALPKAELNSLFLVDGD---PSL-PQELSAKEEHSPNVGSAS 189
ET+A +P A L F++DGD P + PQ +S+ E N G +
Sbjct: 6 ETEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGT 52
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,413,262
Number of Sequences: 62578
Number of extensions: 300228
Number of successful extensions: 707
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 683
Number of HSP's gapped (non-prelim): 26
length of query: 254
length of database: 14,973,337
effective HSP length: 97
effective length of query: 157
effective length of database: 8,903,271
effective search space: 1397813547
effective search space used: 1397813547
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)