Query 025333
Match_columns 254
No_of_seqs 172 out of 1243
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 04:47:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025333.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025333hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0084 TatD Mg-dependent DNas 100.0 8.1E-56 1.8E-60 392.9 22.3 197 2-245 59-256 (256)
2 PRK10425 DNase TatD; Provision 100.0 1.9E-52 4.2E-57 372.9 22.3 201 2-245 57-258 (258)
3 PRK10812 putative DNAse; Provi 100.0 2.4E-51 5.3E-56 367.1 22.5 202 2-252 62-263 (265)
4 PRK11449 putative deoxyribonuc 100.0 2.7E-51 6E-56 365.5 22.7 196 2-245 61-258 (258)
5 PF01026 TatD_DNase: TatD rela 100.0 1.3E-51 2.8E-56 366.4 19.1 197 2-244 57-255 (255)
6 KOG3020 TatD-related DNase [Re 100.0 1.1E-46 2.3E-51 337.8 18.4 212 2-245 75-296 (296)
7 TIGR00010 hydrolase, TatD fami 100.0 6.9E-37 1.5E-41 268.0 21.7 196 2-245 57-252 (252)
8 cd01310 TatD_DNAse TatD like p 100.0 2.2E-36 4.7E-41 264.4 22.2 195 2-244 57-251 (251)
9 cd00530 PTE Phosphotriesterase 100.0 1.4E-31 3E-36 240.9 19.1 190 3-243 78-293 (293)
10 COG1099 Predicted metal-depend 100.0 9.4E-30 2E-34 218.0 19.4 180 3-246 69-254 (254)
11 COG1831 Predicted metal-depend 99.8 1.9E-20 4E-25 164.7 14.6 186 3-246 81-283 (285)
12 TIGR03583 EF_0837 probable ami 99.7 2.6E-17 5.6E-22 152.9 14.4 173 5-247 117-314 (365)
13 PRK09875 putative hydrolase; P 99.6 7E-14 1.5E-18 127.0 19.1 188 6-244 88-292 (292)
14 cd01295 AdeC Adenine deaminase 99.4 6.4E-12 1.4E-16 119.3 17.2 161 18-246 91-255 (422)
15 cd01307 Met_dep_hydrolase_B Me 99.4 2.2E-11 4.7E-16 112.2 16.8 134 57-246 151-297 (338)
16 PF04909 Amidohydro_2: Amidohy 99.2 2E-10 4.3E-15 100.7 12.1 133 15-155 83-238 (273)
17 PF02126 PTE: Phosphotriestera 99.1 8.4E-10 1.8E-14 101.1 11.0 165 30-244 123-308 (308)
18 PRK09237 dihydroorotase; Provi 99.1 9.5E-09 2.1E-13 96.1 17.8 166 18-246 135-316 (380)
19 COG2159 Predicted metal-depend 99.0 3.6E-08 7.9E-13 89.7 18.8 162 17-247 113-292 (293)
20 cd01292 metallo-dependent_hydr 98.9 1.2E-08 2.6E-13 88.2 11.7 99 53-153 131-238 (275)
21 COG1735 Php Predicted metal-de 98.8 2.4E-07 5.3E-12 83.7 15.5 195 5-245 101-314 (316)
22 cd01311 PDC_hydrolase 2-pyrone 98.3 7.4E-06 1.6E-10 73.0 12.4 97 55-154 110-225 (263)
23 TIGR01975 isoAsp_dipep isoaspa 98.3 1.6E-05 3.5E-10 75.2 13.3 170 28-246 149-344 (389)
24 COG3964 Predicted amidohydrola 98.0 0.00011 2.5E-09 66.7 12.7 133 57-247 174-321 (386)
25 PRK12394 putative metallo-depe 97.9 0.0005 1.1E-08 64.4 16.5 139 54-246 172-321 (379)
26 PRK10657 isoaspartyl dipeptida 97.9 0.00048 1E-08 64.4 15.9 177 30-247 151-344 (388)
27 cd01297 D-aminoacylase D-amino 97.9 0.0013 2.8E-08 62.5 17.9 171 15-246 162-355 (415)
28 TIGR01178 ade adenine deaminas 97.8 0.00063 1.4E-08 67.2 15.4 163 19-247 133-297 (552)
29 TIGR01430 aden_deam adenosine 97.7 0.0029 6.3E-08 58.0 17.2 132 54-245 171-313 (324)
30 TIGR02967 guan_deamin guanine 97.6 0.0024 5.3E-08 60.0 15.4 95 55-151 186-298 (401)
31 cd01312 Met_dep_hydrolase_D Me 97.6 0.0027 5.8E-08 59.8 15.6 100 51-152 159-291 (381)
32 cd01293 Bact_CD Bacterial cyto 97.6 0.002 4.3E-08 59.7 14.3 123 19-151 161-309 (398)
33 PRK09228 guanine deaminase; Pr 97.6 0.0035 7.6E-08 59.9 15.8 96 54-151 210-323 (433)
34 PRK07213 chlorohydrolase; Prov 97.5 0.0039 8.5E-08 58.4 15.6 136 54-247 178-327 (375)
35 cd01299 Met_dep_hydrolase_A Me 97.5 0.0069 1.5E-07 55.4 16.4 65 54-123 159-223 (342)
36 COG2355 Zn-dependent dipeptida 97.5 0.0038 8.1E-08 57.4 14.1 133 58-244 152-308 (313)
37 cd01308 Isoaspartyl-dipeptidas 97.4 0.011 2.5E-07 55.1 17.4 175 32-247 151-343 (387)
38 PRK09045 N-ethylammeline chlor 97.4 0.006 1.3E-07 58.3 15.4 97 54-152 201-312 (443)
39 cd01309 Met_dep_hydrolase_C Me 97.4 0.003 6.5E-08 58.9 12.7 119 69-247 193-321 (359)
40 cd01320 ADA Adenosine deaminas 97.4 0.013 2.8E-07 53.6 16.3 128 54-242 172-310 (325)
41 COG3618 Predicted metal-depend 97.3 0.0099 2.2E-07 53.7 14.6 134 55-245 124-278 (279)
42 PRK08203 hydroxydechloroatrazi 97.3 0.027 5.7E-07 54.0 18.3 97 54-152 213-324 (451)
43 PRK06687 chlorohydrolase; Vali 97.3 0.013 2.8E-07 55.6 15.7 95 55-151 196-305 (419)
44 PRK08204 hypothetical protein; 97.3 0.007 1.5E-07 57.7 13.8 96 55-152 201-304 (449)
45 PRK07583 cytosine deaminase-li 97.2 0.013 2.9E-07 56.0 15.6 95 55-151 212-333 (438)
46 PRK09358 adenosine deaminase; 97.2 0.026 5.6E-07 52.1 16.8 127 55-242 182-319 (340)
47 cd01298 ATZ_TRZ_like TRZ/ATZ f 97.2 0.017 3.6E-07 53.9 15.4 97 54-152 193-304 (411)
48 cd01296 Imidazolone-5PH Imidaz 97.2 0.0071 1.5E-07 56.0 12.8 135 54-247 192-331 (371)
49 cd01300 YtcJ_like YtcJ_like me 97.2 0.011 2.3E-07 57.0 14.3 99 54-154 294-415 (479)
50 PLN02942 dihydropyrimidinase 97.1 0.036 7.7E-07 53.9 17.7 35 213-247 349-383 (486)
51 PRK07228 N-ethylammeline chlor 97.1 0.023 5E-07 54.2 15.8 97 54-152 198-309 (445)
52 PRK07572 cytosine deaminase; V 97.1 0.018 3.9E-07 54.9 14.9 124 19-151 162-311 (426)
53 cd01305 archeal_chlorohydrolas 97.1 0.0072 1.6E-07 53.5 11.3 90 57-151 127-223 (263)
54 PF01244 Peptidase_M19: Membra 97.0 0.0062 1.3E-07 56.2 10.7 132 60-244 165-319 (320)
55 PRK15493 5-methylthioadenosine 97.0 0.028 6.2E-07 53.7 15.1 95 55-151 197-306 (435)
56 PRK06380 metal-dependent hydro 97.0 0.03 6.6E-07 52.9 14.9 95 55-151 186-296 (418)
57 PRK10027 cryptic adenine deami 97.0 0.039 8.4E-07 55.1 16.2 164 19-247 168-331 (588)
58 PRK06038 N-ethylammeline chlor 97.0 0.023 5E-07 54.1 14.2 95 55-151 190-299 (430)
59 PRK09356 imidazolonepropionase 96.9 0.02 4.4E-07 53.8 13.6 134 55-247 222-361 (406)
60 PLN02795 allantoinase 96.9 0.11 2.4E-06 50.8 18.7 37 209-246 392-428 (505)
61 PRK08393 N-ethylammeline chlor 96.9 0.037 8E-07 52.6 14.9 96 55-152 189-299 (424)
62 cd01303 GDEase Guanine deamina 96.9 0.047 1E-06 52.1 15.5 96 55-152 208-321 (429)
63 PRK12393 amidohydrolase; Provi 96.9 0.055 1.2E-06 52.1 16.1 96 55-152 218-328 (457)
64 cd01294 DHOase Dihydroorotase 96.8 0.015 3.1E-07 53.7 11.5 35 212-248 266-300 (335)
65 cd01313 Met_dep_hydrolase_E Me 96.8 0.053 1.1E-06 51.6 15.1 95 55-152 207-316 (418)
66 PRK06886 hypothetical protein; 96.7 0.061 1.3E-06 49.9 14.3 159 31-246 143-328 (329)
67 cd01301 rDP_like renal dipepti 96.6 0.037 8E-07 50.9 12.5 131 59-242 158-309 (309)
68 TIGR01224 hutI imidazoloneprop 96.6 0.034 7.4E-07 51.6 12.3 135 55-247 197-335 (377)
69 PF07969 Amidohydro_3: Amidohy 96.6 0.065 1.4E-06 50.0 14.1 136 57-248 227-390 (404)
70 PRK09061 D-glutamate deacylase 96.6 0.15 3.2E-06 50.0 16.9 77 15-102 164-255 (509)
71 PRK06846 putative deaminase; V 96.5 0.18 4E-06 47.7 16.8 97 53-152 204-314 (410)
72 PRK06151 N-ethylammeline chlor 96.5 0.073 1.6E-06 51.7 14.2 95 54-150 220-338 (488)
73 PRK08418 chlorohydrolase; Prov 96.4 0.18 4E-06 47.8 15.7 94 55-151 190-313 (408)
74 cd01304 FMDH_A Formylmethanofu 96.2 0.21 4.6E-06 49.3 15.5 23 224-246 425-447 (541)
75 PTZ00124 adenosine deaminase; 96.2 0.81 1.7E-05 43.1 18.9 128 56-243 207-348 (362)
76 COG1001 AdeC Adenine deaminase 96.2 0.19 4.1E-06 49.8 14.8 163 19-247 160-324 (584)
77 PRK09230 cytosine deaminase; P 96.1 0.16 3.4E-06 48.6 13.9 98 53-152 193-316 (426)
78 PRK14085 imidazolonepropionase 96.1 0.13 2.9E-06 48.1 13.2 134 55-246 207-344 (382)
79 cd01306 PhnM PhnM is believed 96.1 0.37 8E-06 44.7 15.8 127 55-247 163-294 (325)
80 PRK07203 putative chlorohydrol 96.0 0.17 3.6E-06 48.4 13.6 95 55-151 205-314 (442)
81 cd01315 L-HYD_ALN L-Hydantoina 96.0 0.21 4.6E-06 47.6 14.1 35 213-247 340-374 (447)
82 PRK05985 cytosine deaminase; P 95.9 0.14 3.1E-06 47.9 12.6 95 55-152 191-299 (391)
83 PRK09229 N-formimino-L-glutama 95.7 0.41 8.8E-06 46.0 14.8 95 55-152 216-325 (456)
84 PRK15446 phosphonate metabolis 95.6 0.6 1.3E-05 44.0 15.5 127 55-247 214-345 (383)
85 cd01302 Cyclic_amidohydrolases 95.5 0.54 1.2E-05 43.4 14.6 57 55-118 115-173 (337)
86 COG1574 Predicted metal-depend 95.5 0.45 9.7E-06 47.1 14.4 150 51-247 317-488 (535)
87 COG0418 PyrC Dihydroorotase [N 95.2 0.47 1E-05 43.6 12.5 150 54-247 117-305 (344)
88 cd00443 ADA_AMPD Adenosine/AMP 95.1 2.5 5.5E-05 38.5 17.3 127 54-242 152-290 (305)
89 TIGR02022 hutF formiminoglutam 95.0 0.88 1.9E-05 43.8 14.8 94 55-151 216-324 (455)
90 PLN02599 dihydroorotase 94.9 0.43 9.4E-06 44.9 12.0 37 208-246 287-323 (364)
91 TIGR02318 phosphono_phnM phosp 94.9 1 2.2E-05 42.4 14.5 128 55-247 209-341 (376)
92 PRK07369 dihydroorotase; Provi 94.9 0.84 1.8E-05 43.6 14.0 38 210-247 331-368 (418)
93 cd01317 DHOase_IIa Dihydroorot 94.6 1.4 3E-05 41.2 14.6 157 49-247 166-326 (374)
94 PRK05451 dihydroorotase; Provi 94.3 0.51 1.1E-05 43.9 10.9 23 227-249 285-307 (345)
95 cd00854 NagA N-acetylglucosami 94.3 2.1 4.6E-05 40.0 15.1 162 58-247 175-345 (374)
96 TIGR02033 D-hydantoinase D-hyd 94.0 1.9 4.1E-05 41.0 14.4 36 212-247 344-379 (454)
97 PRK09357 pyrC dihydroorotase; 94.0 1.6 3.5E-05 41.2 13.8 36 212-247 330-365 (423)
98 COG1228 HutI Imidazolonepropio 93.9 0.97 2.1E-05 43.2 12.0 128 58-247 223-357 (406)
99 PRK08417 dihydroorotase; Provi 93.8 1.8 4E-05 40.7 13.7 37 211-247 300-336 (386)
100 cd01321 ADGF Adenosine deamina 93.8 5 0.00011 37.4 16.3 94 54-153 178-289 (345)
101 TIGR03314 Se_ssnA putative sel 93.7 0.38 8.3E-06 46.1 9.1 95 55-151 204-313 (441)
102 PF00962 A_deaminase: Adenosin 93.7 1.6 3.4E-05 39.8 12.8 162 15-246 146-321 (331)
103 TIGR00857 pyrC_multi dihydroor 93.7 2.4 5.3E-05 40.1 14.3 35 212-247 318-352 (411)
104 TIGR03178 allantoinase allanto 93.3 4.4 9.5E-05 38.7 15.5 155 49-246 210-370 (443)
105 PRK11170 nagA N-acetylglucosam 93.2 3.6 7.9E-05 38.8 14.6 160 59-247 179-347 (382)
106 PRK08323 phenylhydantoinase; V 93.0 4 8.6E-05 38.9 14.8 34 213-246 343-376 (459)
107 COG0402 SsnA Cytosine deaminas 92.5 1.5 3.2E-05 41.7 11.0 96 54-151 197-307 (421)
108 KOG4245 Predicted metal-depend 92.5 1 2.2E-05 39.2 8.8 66 2-77 68-133 (297)
109 PRK08044 allantoinase; Provisi 92.0 2.5 5.5E-05 40.6 12.1 154 49-246 216-375 (449)
110 PRK13404 dihydropyrimidinase; 91.8 4.9 0.00011 39.0 13.9 163 49-246 215-385 (477)
111 cd01314 D-HYD D-hydantoinases 91.6 8.6 0.00019 36.5 15.1 35 213-247 343-377 (447)
112 TIGR00221 nagA N-acetylglucosa 91.3 8.2 0.00018 36.5 14.5 161 59-247 181-350 (380)
113 TIGR00856 pyrC_dimer dihydroor 90.9 7.1 0.00015 36.3 13.5 36 209-246 266-301 (341)
114 PRK13125 trpA tryptophan synth 90.2 12 0.00027 32.8 14.0 121 17-145 18-156 (244)
115 PRK09236 dihydroorotase; Revie 90.1 15 0.00032 35.1 15.3 154 49-246 210-368 (444)
116 PRK06189 allantoinase; Provisi 89.7 11 0.00024 36.1 14.1 154 49-246 213-373 (451)
117 TIGR03121 one_C_dehyd_A formyl 89.4 5.4 0.00012 39.7 11.7 24 224-247 428-451 (556)
118 PRK09059 dihydroorotase; Valid 89.3 9 0.00019 36.7 13.1 34 212-246 337-370 (429)
119 PRK07575 dihydroorotase; Provi 88.7 8.9 0.00019 36.7 12.6 153 49-246 206-362 (438)
120 PRK07627 dihydroorotase; Provi 87.6 11 0.00024 36.0 12.5 33 213-246 333-365 (425)
121 cd01318 DHOase_IIb Dihydroorot 87.3 25 0.00055 32.8 15.3 153 49-247 152-308 (361)
122 PF02581 TMP-TENI: Thiamine mo 86.6 17 0.00037 30.3 11.7 113 15-148 11-123 (180)
123 PRK06361 hypothetical protein; 85.6 7 0.00015 33.3 9.1 127 60-245 77-210 (212)
124 PRK09060 dihydroorotase; Valid 82.6 31 0.00067 33.1 13.0 154 49-246 208-364 (444)
125 PRK02382 dihydroorotase; Provi 81.6 30 0.00065 33.0 12.5 152 49-247 208-362 (443)
126 TIGR01431 adm_rel adenosine de 81.3 7 0.00015 38.2 8.1 94 54-153 305-415 (479)
127 cd01316 CAD_DHOase The eukaryo 79.7 29 0.00064 32.2 11.4 38 209-247 245-282 (344)
128 PRK09856 fructoselysine 3-epim 79.7 42 0.0009 29.4 12.8 126 13-144 43-203 (275)
129 TIGR00693 thiE thiamine-phosph 79.7 35 0.00075 28.5 12.0 109 17-146 14-122 (196)
130 cd03465 URO-D_like The URO-D _ 79.6 27 0.00059 31.5 11.0 97 52-152 205-312 (330)
131 PRK01060 endonuclease IV; Prov 78.6 46 0.001 29.3 12.6 68 9-76 39-111 (281)
132 smart00518 AP2Ec AP endonuclea 77.2 24 0.00051 31.0 9.6 63 13-76 41-106 (273)
133 KOG2902 Dihydroorotase [Nucleo 76.9 33 0.00072 30.9 10.1 49 202-252 259-311 (344)
134 COG1820 NagA N-acetylglucosami 76.8 51 0.0011 31.3 12.0 37 212-248 311-347 (380)
135 PF03102 NeuB: NeuB family; I 74.6 10 0.00023 33.7 6.5 103 14-123 53-180 (241)
136 PRK06512 thiamine-phosphate py 73.4 62 0.0013 28.2 11.9 110 17-147 27-138 (221)
137 cd03308 CmuA_CmuC_like CmuA_Cm 72.9 41 0.00089 31.6 10.5 99 54-154 254-360 (378)
138 TIGR03178 allantoinase allanto 72.5 26 0.00057 33.4 9.2 24 54-77 160-183 (443)
139 KOG1097 Adenine deaminase/aden 72.4 93 0.002 29.8 14.2 85 30-123 208-297 (399)
140 cd00465 URO-D_CIMS_like The UR 72.3 65 0.0014 28.7 11.3 95 54-153 185-287 (306)
141 PRK04326 methionine synthase; 72.0 79 0.0017 28.8 12.9 99 53-153 191-301 (330)
142 PRK02308 uvsE putative UV dama 71.4 28 0.00061 31.9 8.8 25 53-77 89-113 (303)
143 cd01317 DHOase_IIa Dihydroorot 70.2 25 0.00054 32.7 8.3 23 55-77 120-142 (374)
144 PRK08392 hypothetical protein; 69.4 72 0.0016 27.3 11.8 108 5-140 92-203 (215)
145 TIGR01792 urease_alph urease, 69.2 13 0.00029 37.1 6.5 61 19-91 202-265 (567)
146 COG0352 ThiE Thiamine monophos 68.9 65 0.0014 28.0 10.1 110 19-151 24-135 (211)
147 COG1242 Predicted Fe-S oxidore 68.4 58 0.0012 29.9 9.8 138 4-151 120-270 (312)
148 CHL00200 trpA tryptophan synth 67.8 93 0.002 27.9 11.3 115 18-139 31-167 (263)
149 PF01979 Amidohydro_1: Amidohy 67.7 34 0.00074 30.3 8.4 68 55-122 144-234 (333)
150 PRK04250 dihydroorotase; Provi 67.0 1.1E+02 0.0024 28.9 12.1 35 212-247 294-328 (398)
151 TIGR01212 radical SAM protein, 66.8 93 0.002 28.3 11.2 132 5-147 115-259 (302)
152 COG0816 Predicted endonuclease 65.3 58 0.0013 26.6 8.5 71 17-90 40-111 (141)
153 COG5014 Predicted Fe-S oxidore 64.3 34 0.00074 29.3 7.1 50 104-153 76-130 (228)
154 PRK00957 methionine synthase; 64.0 1.1E+02 0.0024 27.6 12.5 84 67-153 189-283 (305)
155 cd04726 KGPDC_HPS 3-Keto-L-gul 64.0 85 0.0018 26.1 11.2 107 22-147 18-133 (202)
156 PRK07203 putative chlorohydrol 63.0 20 0.00044 34.1 6.3 59 61-123 244-312 (442)
157 PRK05222 5-methyltetrahydropte 62.5 1.1E+02 0.0025 31.7 12.0 122 30-154 596-732 (758)
158 TIGR01371 met_syn_B12ind 5-met 62.3 2E+02 0.0043 29.9 14.7 123 30-154 590-727 (750)
159 PLN02475 5-methyltetrahydropte 61.1 1.4E+02 0.0031 31.1 12.4 122 30-154 601-738 (766)
160 cd08582 GDPD_like_2 Glyceropho 60.3 47 0.001 28.5 7.7 56 56-113 88-149 (233)
161 cd00739 DHPS DHPS subgroup of 60.2 47 0.001 29.7 7.8 47 58-104 110-180 (257)
162 PRK09228 guanine deaminase; Pr 60.2 84 0.0018 30.0 10.0 108 3-123 197-321 (433)
163 PRK09230 cytosine deaminase; P 59.7 92 0.002 29.7 10.2 62 57-122 226-312 (426)
164 PF02007 MtrH: Tetrahydrometha 59.2 1.1E+02 0.0023 28.2 9.8 104 48-155 44-157 (296)
165 TIGR00629 uvde UV damage endon 58.9 85 0.0018 29.1 9.3 26 52-77 91-116 (312)
166 PRK15452 putative protease; Pr 58.9 1.4E+02 0.003 29.0 11.2 123 18-150 12-144 (443)
167 cd00019 AP2Ec AP endonuclease 58.5 1.3E+02 0.0028 26.4 13.3 63 15-77 43-108 (279)
168 COG0044 PyrC Dihydroorotase an 57.8 1.7E+02 0.0036 28.3 11.5 153 49-247 204-363 (430)
169 PRK09195 gatY tagatose-bisphos 57.5 67 0.0015 29.3 8.4 59 55-116 29-98 (284)
170 PRK10550 tRNA-dihydrouridine s 57.3 1.5E+02 0.0031 27.3 10.7 96 51-150 113-227 (312)
171 smart00633 Glyco_10 Glycosyl h 57.3 42 0.00091 29.5 7.0 19 56-74 170-188 (254)
172 COG0826 Collagenase and relate 57.3 1.6E+02 0.0034 27.6 11.0 117 17-140 14-160 (347)
173 KOG4127 Renal dipeptidase [Pos 57.1 69 0.0015 30.5 8.4 32 212-244 358-389 (419)
174 PRK12738 kbaY tagatose-bisphos 55.7 1E+02 0.0022 28.1 9.2 59 55-116 29-98 (286)
175 PF03599 CdhD: CO dehydrogenas 55.4 1.2E+02 0.0025 29.0 9.8 128 15-148 41-177 (386)
176 COG1387 HIS2 Histidinol phosph 55.4 1.4E+02 0.0031 26.1 10.3 82 18-123 113-194 (237)
177 cd08562 GDPD_EcUgpQ_like Glyce 55.3 91 0.002 26.5 8.6 56 56-113 88-150 (229)
178 PRK05835 fructose-bisphosphate 55.2 69 0.0015 29.6 8.1 60 55-116 28-98 (307)
179 TIGR00736 nifR3_rel_arch TIM-b 55.2 1.4E+02 0.0031 26.3 9.8 91 53-148 119-221 (231)
180 PRK03512 thiamine-phosphate py 55.0 1.4E+02 0.003 25.7 9.8 85 49-148 44-130 (211)
181 PF06187 DUF993: Protein of un 53.6 76 0.0017 29.9 8.0 67 31-101 109-186 (382)
182 PRK09856 fructoselysine 3-epim 53.1 76 0.0017 27.7 7.9 53 50-102 124-187 (275)
183 cd03310 CIMS_like CIMS - Cobal 53.0 1.7E+02 0.0037 26.2 11.8 116 30-154 166-302 (321)
184 PRK00043 thiE thiamine-phospha 52.8 1.4E+02 0.0029 25.0 14.5 110 17-147 22-131 (212)
185 PF01208 URO-D: Uroporphyrinog 52.2 67 0.0015 29.2 7.7 96 52-151 217-323 (343)
186 PRK14047 putative methyltransf 52.2 1.7E+02 0.0037 27.1 9.9 105 48-156 49-163 (310)
187 COG0042 tRNA-dihydrouridine sy 52.1 2E+02 0.0043 26.6 10.7 94 53-150 119-231 (323)
188 PRK07213 chlorohydrolase; Prov 51.6 1.8E+02 0.004 26.9 10.6 59 61-123 218-284 (375)
189 TIGR00262 trpA tryptophan synt 51.2 1.8E+02 0.0039 25.9 13.3 113 18-139 26-163 (256)
190 TIGR03569 NeuB_NnaB N-acetylne 51.2 90 0.0019 29.1 8.3 63 60-122 125-201 (329)
191 PF07905 PucR: Purine cataboli 50.9 35 0.00076 26.6 4.8 55 19-84 61-116 (123)
192 cd03309 CmuC_like CmuC_like. P 50.7 2E+02 0.0044 26.4 11.5 94 54-151 197-302 (321)
193 PRK08610 fructose-bisphosphate 50.7 95 0.0021 28.3 8.2 61 55-116 29-101 (286)
194 PRK12857 fructose-1,6-bisphosp 49.7 97 0.0021 28.2 8.1 59 55-116 29-98 (284)
195 PRK13404 dihydropyrimidinase; 49.3 72 0.0016 30.9 7.7 24 55-78 166-189 (477)
196 PRK09196 fructose-1,6-bisphosp 49.1 38 0.00082 31.8 5.4 55 57-116 214-271 (347)
197 TIGR01858 tag_bisphos_ald clas 49.1 1.5E+02 0.0032 27.0 9.2 59 55-116 27-96 (282)
198 cd07944 DRE_TIM_HOA_like 4-hyd 48.9 1.3E+02 0.0027 26.9 8.7 139 14-156 17-167 (266)
199 cd02911 arch_FMN Archeal FMN-b 48.8 1.8E+02 0.004 25.3 11.0 90 54-149 125-222 (233)
200 PRK12737 gatY tagatose-bisphos 48.7 1.2E+02 0.0026 27.6 8.5 59 55-116 29-98 (284)
201 cd00947 TBP_aldolase_IIB Tagat 48.6 1.2E+02 0.0025 27.6 8.4 62 55-116 24-93 (276)
202 PRK14000 potassium-transportin 48.2 15 0.00032 31.5 2.4 42 210-251 134-176 (185)
203 PRK12290 thiE thiamine-phospha 48.0 2.7E+02 0.0059 27.1 11.9 86 48-148 241-328 (437)
204 cd01314 D-HYD D-hydantoinases 47.7 86 0.0019 29.7 7.9 23 55-77 162-184 (447)
205 PF01116 F_bP_aldolase: Fructo 47.2 83 0.0018 28.7 7.3 57 55-116 28-97 (287)
206 PRK13209 L-xylulose 5-phosphat 47.1 2E+02 0.0043 25.2 12.2 59 15-73 55-117 (283)
207 PF10230 DUF2305: Uncharacteri 47.0 1.7E+02 0.0037 25.9 9.2 76 14-90 17-106 (266)
208 cd00127 DSPc Dual specificity 46.7 39 0.00084 26.1 4.5 30 50-79 63-92 (139)
209 TIGR01114 mtrH N5-methyltetrah 46.3 2.1E+02 0.0046 26.5 9.6 105 48-155 49-162 (314)
210 PRK08044 allantoinase; Provisi 46.2 75 0.0016 30.5 7.2 24 55-78 167-190 (449)
211 PF13147 Amidohydro_4: Amidohy 46.1 1.8E+02 0.0039 24.5 11.9 34 212-246 256-289 (304)
212 COG4464 CapC Capsular polysacc 45.9 1.1E+02 0.0024 27.1 7.4 59 96-155 133-200 (254)
213 PRK05835 fructose-bisphosphate 45.6 53 0.0012 30.3 5.8 50 63-116 199-249 (307)
214 PRK00979 tetrahydromethanopter 45.6 2.5E+02 0.0055 26.0 11.4 95 48-150 49-157 (308)
215 cd03311 CIMS_C_terminal_like C 45.4 2.4E+02 0.0052 25.6 14.5 120 30-154 170-313 (332)
216 PRK13985 ureB urease subunit b 45.2 52 0.0011 33.0 6.0 48 19-77 203-250 (568)
217 PF01207 Dus: Dihydrouridine s 45.1 1.5E+02 0.0032 27.1 8.6 94 53-150 106-216 (309)
218 TIGR01244 conserved hypothetic 45.0 27 0.00059 27.8 3.4 25 51-78 72-96 (135)
219 PF04273 DUF442: Putative phos 44.7 15 0.00033 28.5 1.8 46 62-111 51-104 (110)
220 PRK02382 dihydroorotase; Provi 44.5 28 0.00062 33.2 4.0 55 19-78 130-184 (443)
221 COG0044 PyrC Dihydroorotase an 44.4 74 0.0016 30.7 6.8 27 52-78 155-181 (430)
222 TIGR02967 guan_deamin guanine 44.3 96 0.0021 28.9 7.5 59 61-123 228-296 (401)
223 PF00809 Pterin_bind: Pterin b 44.0 50 0.0011 28.4 5.1 23 68-90 92-116 (210)
224 PRK13209 L-xylulose 5-phosphat 44.0 1.2E+02 0.0027 26.5 7.8 48 51-98 134-186 (283)
225 COG1816 Add Adenosine deaminas 43.9 2.8E+02 0.0061 26.1 14.5 125 17-152 153-288 (345)
226 COG1082 IolE Sugar phosphate i 43.2 1.5E+02 0.0032 25.6 8.2 58 19-76 47-106 (274)
227 PRK07709 fructose-bisphosphate 43.2 2E+02 0.0043 26.2 9.1 61 55-116 29-101 (285)
228 PRK07084 fructose-bisphosphate 42.8 2.4E+02 0.0052 26.2 9.6 61 55-116 35-109 (321)
229 COG0620 MetE Methionine syntha 42.7 2.2E+02 0.0047 26.5 9.4 99 52-153 193-306 (330)
230 TIGR00433 bioB biotin syntheta 42.6 2.4E+02 0.0052 24.9 10.4 38 54-91 97-134 (296)
231 TIGR03128 RuMP_HxlA 3-hexulose 42.4 2E+02 0.0044 24.0 10.5 116 17-148 12-134 (206)
232 TIGR03314 Se_ssnA putative sel 42.3 91 0.002 29.8 7.1 51 69-123 255-311 (441)
233 TIGR00250 RNAse_H_YqgF RNAse H 42.3 1.7E+02 0.0037 23.2 9.2 72 16-90 34-106 (130)
234 cd00405 PRAI Phosphoribosylant 42.3 1.8E+02 0.0038 24.5 8.2 67 77-151 60-131 (203)
235 COG1456 CdhE CO dehydrogenase/ 41.9 54 0.0012 31.1 5.2 50 52-103 189-243 (467)
236 PRK00109 Holliday junction res 41.9 1.8E+02 0.0039 23.3 9.0 71 17-90 41-112 (138)
237 PRK14001 potassium-transportin 41.3 25 0.00053 30.2 2.7 36 210-245 135-171 (189)
238 PRK14002 potassium-transportin 41.3 25 0.00055 30.1 2.8 36 210-245 131-167 (186)
239 PRK13207 ureC urease subunit a 41.0 59 0.0013 32.6 5.7 63 55-121 228-299 (568)
240 TIGR01521 FruBisAldo_II_B fruc 40.3 1.2E+02 0.0025 28.7 7.2 60 55-116 27-97 (347)
241 PF07745 Glyco_hydro_53: Glyco 40.2 97 0.0021 28.9 6.7 68 86-154 163-243 (332)
242 PRK09997 hydroxypyruvate isome 40.1 1.7E+02 0.0036 25.5 8.0 48 54-101 123-183 (258)
243 PRK13399 fructose-1,6-bisphosp 40.1 77 0.0017 29.8 6.0 56 57-116 214-271 (347)
244 PRK13995 potassium-transportin 40.0 27 0.00059 30.3 2.8 36 210-245 145-181 (203)
245 PRK00369 pyrC dihydroorotase; 39.9 3.3E+02 0.0072 25.7 15.0 36 212-248 285-320 (392)
246 COG5309 Exo-beta-1,3-glucanase 39.6 1.3E+02 0.0027 27.6 7.0 40 29-68 231-273 (305)
247 PRK00315 potassium-transportin 39.5 33 0.00072 29.5 3.2 37 210-246 135-172 (193)
248 PRK14040 oxaloacetate decarbox 39.2 4E+02 0.0087 26.9 11.3 82 55-139 97-193 (593)
249 TIGR01521 FruBisAldo_II_B fruc 39.1 57 0.0012 30.7 5.0 61 57-121 212-275 (347)
250 PRK09196 fructose-1,6-bisphosp 39.0 1.4E+02 0.0031 28.0 7.6 62 55-116 29-99 (347)
251 TIGR00694 thiM hydroxyethylthi 38.9 69 0.0015 28.2 5.3 79 18-113 39-123 (249)
252 PRK13999 potassium-transportin 38.3 29 0.00063 30.1 2.7 36 210-245 144-180 (201)
253 TIGR01520 FruBisAldo_II_A fruc 38.2 3.5E+02 0.0077 25.6 10.3 49 15-76 11-59 (357)
254 COG2089 SpsE Sialic acid synth 38.1 87 0.0019 29.3 5.9 107 15-123 88-214 (347)
255 PRK07998 gatY putative fructos 38.1 2.9E+02 0.0063 25.2 9.3 59 55-116 29-98 (283)
256 PF08444 Gly_acyl_tr_C: Aralky 38.1 63 0.0014 24.3 4.2 57 34-91 19-75 (89)
257 TIGR03586 PseI pseudaminic aci 38.1 1.5E+02 0.0033 27.5 7.7 62 60-122 126-200 (327)
258 PRK13996 potassium-transportin 38.0 30 0.00066 29.9 2.8 36 210-245 141-177 (197)
259 PF01402 RHH_1: Ribbon-helix-h 38.0 62 0.0013 19.6 3.6 31 210-240 7-37 (39)
260 PRK13998 potassium-transportin 37.9 29 0.00062 29.7 2.6 32 210-241 133-164 (186)
261 PRK03892 ribonuclease P protei 37.9 1.4E+02 0.0031 26.2 6.8 65 6-76 107-174 (216)
262 PRK08393 N-ethylammeline chlor 37.7 1.1E+02 0.0024 28.9 6.9 59 61-123 228-296 (424)
263 PRK06052 5-methyltetrahydropte 37.6 2.1E+02 0.0045 26.9 8.4 97 50-153 180-318 (344)
264 PRK13997 potassium-transportin 37.6 36 0.00079 29.3 3.2 36 210-245 137-173 (193)
265 TIGR03234 OH-pyruv-isom hydrox 37.5 2.1E+02 0.0046 24.6 8.2 44 55-98 123-176 (254)
266 PRK08999 hypothetical protein; 37.4 2.3E+02 0.0049 25.5 8.6 85 48-148 168-254 (312)
267 PRK07535 methyltetrahydrofolat 36.9 1.3E+02 0.0028 26.9 6.8 42 55-101 80-125 (261)
268 PF04748 Polysacc_deac_2: Dive 36.3 1.4E+02 0.003 25.9 6.7 62 58-119 35-123 (213)
269 TIGR00681 kdpC K+-transporting 36.1 35 0.00076 29.2 2.8 36 210-245 133-169 (187)
270 PF01261 AP_endonuc_2: Xylose 35.7 90 0.002 25.4 5.3 50 49-98 106-163 (213)
271 cd01305 archeal_chlorohydrolas 35.4 93 0.002 27.2 5.6 57 63-123 159-221 (263)
272 COG0191 Fba Fructose/tagatose 35.4 2.4E+02 0.0053 25.8 8.3 59 55-116 29-99 (286)
273 COG0106 HisA Phosphoribosylfor 35.3 81 0.0018 28.1 5.1 49 104-153 86-134 (241)
274 PLN02898 HMP-P kinase/thiamin- 35.0 3.8E+02 0.0083 26.1 10.3 87 49-150 332-424 (502)
275 PRK11148 cyclic 3',5'-adenosin 34.8 71 0.0015 28.3 4.8 54 36-89 124-193 (275)
276 PRK07315 fructose-bisphosphate 34.4 3.3E+02 0.0071 24.8 9.1 61 55-116 29-100 (293)
277 PRK13585 1-(5-phosphoribosyl)- 34.4 3E+02 0.0065 23.6 10.0 17 58-74 66-82 (241)
278 COG3453 Uncharacterized protei 34.4 31 0.00067 27.7 2.1 24 51-77 73-96 (130)
279 cd00453 FTBP_aldolase_II Fruct 34.4 2.8E+02 0.0061 26.0 8.7 65 55-122 24-118 (340)
280 PF13541 ChlI: Subunit ChlI of 34.4 27 0.00058 27.7 1.7 33 29-69 80-112 (121)
281 TIGR03849 arch_ComA phosphosul 34.3 3.4E+02 0.0073 24.2 9.7 99 52-151 68-195 (237)
282 TIGR01859 fruc_bis_ald_ fructo 33.9 2E+02 0.0043 26.0 7.6 60 55-116 27-98 (282)
283 PRK06189 allantoinase; Provisi 33.8 1.6E+02 0.0034 28.2 7.3 23 56-78 165-187 (451)
284 TIGR00167 cbbA ketose-bisphosp 33.7 3.7E+02 0.008 24.5 9.5 61 55-116 29-101 (288)
285 PF00682 HMGL-like: HMGL-like 33.4 3.1E+02 0.0066 23.4 11.1 122 15-147 12-157 (237)
286 PRK13399 fructose-1,6-bisphosp 33.4 1.6E+02 0.0035 27.6 7.0 61 55-116 29-99 (347)
287 PF01261 AP_endonuc_2: Xylose 33.3 2.6E+02 0.0056 22.6 9.6 58 17-76 27-93 (213)
288 COG0269 SgbH 3-hexulose-6-phos 33.1 3.4E+02 0.0074 23.9 9.0 86 56-147 94-192 (217)
289 PRK14003 potassium-transportin 32.7 43 0.00092 28.9 2.8 36 210-245 138-174 (194)
290 smart00195 DSPc Dual specifici 32.6 86 0.0019 24.3 4.5 28 51-78 61-88 (138)
291 PF07611 DUF1574: Protein of u 32.5 76 0.0017 29.8 4.7 42 49-90 246-287 (345)
292 PRK06801 hypothetical protein; 32.4 1.8E+02 0.0038 26.6 7.0 59 55-116 29-98 (286)
293 PF12085 DUF3562: Protein of u 32.3 98 0.0021 22.0 4.1 31 212-242 5-35 (66)
294 PRK13994 potassium-transportin 31.9 40 0.00087 29.7 2.6 36 210-245 165-201 (222)
295 PF02679 ComA: (2R)-phospho-3- 31.9 3.7E+02 0.0081 24.0 9.4 127 16-151 53-207 (244)
296 PF07745 Glyco_hydro_53: Glyco 31.4 1.5E+02 0.0032 27.7 6.4 39 3-42 203-242 (332)
297 PF09124 Endonuc-dimeris: T4 r 31.4 36 0.00079 23.2 1.7 50 6-64 1-52 (54)
298 CHL00198 accA acetyl-CoA carbo 30.4 4.5E+02 0.0098 24.5 10.3 28 215-242 289-316 (322)
299 TIGR01496 DHPS dihydropteroate 30.4 1.6E+02 0.0034 26.3 6.2 20 57-76 107-127 (257)
300 cd08556 GDPD Glycerophosphodie 30.3 2E+02 0.0044 23.1 6.5 92 15-113 12-109 (189)
301 PF13378 MR_MLE_C: Enolase C-t 30.1 49 0.0011 24.9 2.5 23 54-76 32-54 (111)
302 cd04724 Tryptophan_synthase_al 30.1 3.8E+02 0.0081 23.4 17.1 125 17-148 15-160 (242)
303 PRK08185 hypothetical protein; 30.0 3.4E+02 0.0073 24.7 8.4 58 55-115 24-91 (283)
304 PLN02858 fructose-bisphosphate 29.9 2.1E+02 0.0046 31.9 8.2 59 55-116 1125-1193(1378)
305 PRK09355 hydroxyethylthiazole 29.8 1.4E+02 0.003 26.5 5.7 79 19-114 45-129 (263)
306 PF02669 KdpC: K+-transporting 29.8 52 0.0011 28.2 2.9 36 210-245 134-170 (188)
307 PRK09121 5-methyltetrahydropte 29.2 4.1E+02 0.0088 24.6 9.0 98 54-154 188-314 (339)
308 TIGR03217 4OH_2_O_val_ald 4-hy 29.2 4.7E+02 0.01 24.2 11.0 138 13-156 20-172 (333)
309 PF03652 UPF0081: Uncharacteri 29.0 1.1E+02 0.0024 24.4 4.6 70 16-88 37-108 (135)
310 PRK09197 fructose-bisphosphate 29.0 2.9E+02 0.0064 26.0 7.9 23 55-77 32-54 (350)
311 PRK00912 ribonuclease P protei 28.9 3.8E+02 0.0082 23.1 11.6 27 219-245 190-216 (237)
312 TIGR03191 benz_CoA_bzdO benzoy 28.8 1.3E+02 0.0029 28.9 5.9 67 66-152 334-403 (430)
313 PRK06233 hypothetical protein; 28.7 2.8E+02 0.0061 26.0 7.9 83 68-153 236-343 (372)
314 PRK01207 methionine synthase; 28.7 4.9E+02 0.011 24.4 10.0 100 52-154 188-319 (343)
315 COG2156 KdpC K+-transporting A 28.3 56 0.0012 28.0 2.8 42 210-251 136-181 (190)
316 PRK06846 putative deaminase; V 28.3 5E+02 0.011 24.3 10.7 65 55-123 235-311 (410)
317 PRK09229 N-formimino-L-glutama 28.3 4.8E+02 0.01 24.9 9.6 50 70-123 267-322 (456)
318 COG1229 FwdA Formylmethanofura 28.2 98 0.0021 30.1 4.6 26 224-249 436-461 (575)
319 PRK04452 acetyl-CoA decarbonyl 27.9 1.8E+02 0.0039 27.0 6.3 47 56-102 163-212 (319)
320 TIGR01048 lysA diaminopimelate 27.8 4.8E+02 0.01 24.4 9.4 59 61-120 17-78 (417)
321 COG3737 Uncharacterized conser 27.6 68 0.0015 25.6 2.9 38 5-43 43-83 (127)
322 COG1533 SplB DNA repair photol 27.4 4.8E+02 0.01 23.8 14.3 125 17-146 67-218 (297)
323 PF13899 Thioredoxin_7: Thiore 27.4 78 0.0017 22.4 3.1 31 57-87 6-36 (82)
324 TIGR01108 oadA oxaloacetate de 27.2 6.5E+02 0.014 25.3 10.5 59 55-116 91-163 (582)
325 PF14297 DUF4373: Domain of un 27.1 77 0.0017 23.1 3.1 35 217-253 49-83 (87)
326 PRK02308 uvsE putative UV dama 27.0 4.7E+02 0.01 23.9 8.9 107 5-113 75-202 (303)
327 PF13684 Dak1_2: Dihydroxyacet 26.8 5E+02 0.011 23.8 9.4 92 60-152 55-154 (313)
328 PF00325 Crp: Bacterial regula 26.6 74 0.0016 19.2 2.3 20 218-237 6-25 (32)
329 COG0420 SbcD DNA repair exonuc 26.5 2.7E+02 0.0058 25.9 7.4 30 48-77 20-49 (390)
330 COG1603 RPP1 RNase P/RNase MRP 26.2 1.3E+02 0.0028 26.7 4.7 28 50-77 144-171 (229)
331 cd08573 GDPD_GDE1 Glycerophosp 26.1 2.8E+02 0.0062 24.4 7.1 56 56-113 90-149 (258)
332 TIGR02631 xylA_Arthro xylose i 25.9 4.4E+02 0.0094 24.9 8.7 75 2-76 47-137 (382)
333 cd00564 TMP_TenI Thiamine mono 25.9 3.5E+02 0.0076 21.7 10.1 108 17-147 13-122 (196)
334 COG1244 Predicted Fe-S oxidore 25.8 3E+02 0.0066 25.9 7.2 126 15-145 149-287 (358)
335 TIGR00542 hxl6Piso_put hexulos 25.5 2.9E+02 0.0063 24.2 7.1 26 49-74 88-114 (279)
336 cd00842 MPP_ASMase acid sphing 25.5 1.1E+02 0.0024 27.2 4.4 42 49-90 194-247 (296)
337 PRK06806 fructose-bisphosphate 25.5 4.6E+02 0.01 23.7 8.4 59 55-116 29-98 (281)
338 cd08560 GDPD_EcGlpQ_like_1 Gly 24.8 2.4E+02 0.0052 26.5 6.6 58 54-113 150-222 (356)
339 TIGR01430 aden_deam adenosine 24.6 4.6E+02 0.0099 23.6 8.4 54 66-123 207-272 (324)
340 PRK02412 aroD 3-dehydroquinate 24.5 4.9E+02 0.011 22.9 9.5 52 19-77 31-83 (253)
341 PF10543 ORF6N: ORF6N domain; 24.4 81 0.0018 23.3 2.8 28 216-243 14-41 (88)
342 cd06831 PLPDE_III_ODC_like_AZI 24.3 4.1E+02 0.0089 25.1 8.2 78 60-147 51-129 (394)
343 PRK11613 folP dihydropteroate 24.2 2.6E+02 0.0057 25.4 6.6 17 60-76 125-142 (282)
344 cd01292 metallo-dependent_hydr 24.0 4.2E+02 0.0091 22.0 8.2 52 68-123 174-234 (275)
345 KOG0081 GTPase Rab27, small G 23.9 1.7E+02 0.0037 24.8 4.8 48 16-73 110-160 (219)
346 COG5495 Uncharacterized conser 23.9 2.5E+02 0.0055 25.3 6.1 104 4-124 118-236 (289)
347 PRK08203 hydroxydechloroatrazi 23.9 6.2E+02 0.014 23.9 10.0 51 69-123 265-321 (451)
348 cd08579 GDPD_memb_like Glycero 23.9 4E+02 0.0087 22.4 7.5 55 56-113 84-145 (220)
349 PRK07572 cytosine deaminase; V 23.6 6.2E+02 0.014 23.8 9.7 61 59-123 224-309 (426)
350 TIGR03767 P_acnes_RR metalloph 23.5 93 0.002 30.7 3.7 41 50-90 321-379 (496)
351 PTZ00170 D-ribulose-5-phosphat 23.4 4.8E+02 0.01 22.5 8.0 76 68-146 65-144 (228)
352 PRK07583 cytosine deaminase-li 23.3 6.4E+02 0.014 23.9 10.2 23 225-247 359-381 (438)
353 PRK07084 fructose-bisphosphate 23.2 2.3E+02 0.0049 26.4 6.0 50 62-115 210-261 (321)
354 PRK15493 5-methylthioadenosine 23.2 4.6E+02 0.01 24.9 8.4 59 61-123 236-304 (435)
355 PF13936 HTH_38: Helix-turn-he 23.1 1.1E+02 0.0024 19.3 2.9 23 216-238 22-44 (44)
356 PF00215 OMPdecase: Orotidine 22.9 2.1E+02 0.0046 24.5 5.6 73 30-113 25-105 (226)
357 PF08440 Poty_PP: Potyviridae 22.9 1E+02 0.0022 28.0 3.6 66 55-120 24-101 (274)
358 TIGR01496 DHPS dihydropteroate 22.6 5.4E+02 0.012 22.8 11.6 60 16-78 23-85 (257)
359 PF13456 RVT_3: Reverse transc 22.6 63 0.0014 22.5 1.9 19 133-151 13-31 (87)
360 PRK13206 ureC urease subunit a 22.5 80 0.0017 31.8 3.1 23 55-77 234-256 (573)
361 PRK13397 3-deoxy-7-phosphohept 22.4 5.6E+02 0.012 22.9 9.2 89 59-149 113-221 (250)
362 PF00834 Ribul_P_3_epim: Ribul 22.4 1.7E+02 0.0038 25.0 4.8 80 67-151 56-138 (201)
363 PLN03229 acetyl-coenzyme A car 22.3 5.1E+02 0.011 27.1 8.7 27 216-242 378-404 (762)
364 PRK13210 putative L-xylulose 5 22.1 5.2E+02 0.011 22.4 12.4 59 14-73 49-112 (284)
365 PRK05985 cytosine deaminase; P 22.0 6.1E+02 0.013 23.4 8.9 63 57-123 222-296 (391)
366 PF03851 UvdE: UV-endonuclease 22.0 3.8E+02 0.0082 24.3 7.1 24 54-77 86-109 (275)
367 cd01170 THZ_kinase 4-methyl-5- 21.9 2.5E+02 0.0053 24.6 5.8 48 19-76 40-87 (242)
368 cd08565 GDPD_pAtGDE_like Glyce 21.6 3.8E+02 0.0082 23.1 6.9 54 57-113 84-146 (235)
369 PRK12677 xylose isomerase; Pro 21.6 3.9E+02 0.0084 25.3 7.4 23 54-76 113-136 (384)
370 TIGR01428 HAD_type_II 2-haloal 21.5 4E+02 0.0087 21.7 6.8 39 101-142 94-132 (198)
371 cd01313 Met_dep_hydrolase_E Me 21.4 5.7E+02 0.012 24.1 8.6 50 70-123 258-313 (418)
372 smart00759 Flu_M1_C Influenza 21.4 42 0.00091 25.1 0.7 26 1-26 59-84 (95)
373 PRK13308 ureC urease subunit a 21.4 86 0.0019 31.5 3.0 23 55-77 228-250 (569)
374 PF06050 HGD-D: 2-hydroxygluta 21.4 4.8E+02 0.01 23.4 7.9 104 23-152 222-329 (349)
375 COG0019 LysA Diaminopimelate d 21.4 3.4E+02 0.0074 25.9 7.0 52 89-146 92-146 (394)
376 cd08567 GDPD_SpGDE_like Glycer 21.4 3.5E+02 0.0076 23.3 6.7 55 56-113 111-181 (263)
377 cd01303 GDEase Guanine deamina 21.3 7E+02 0.015 23.5 11.9 59 61-123 250-318 (429)
378 TIGR03249 KdgD 5-dehydro-4-deo 21.2 6E+02 0.013 22.7 10.7 69 14-88 23-94 (296)
379 COG0036 Rpe Pentose-5-phosphat 21.2 5.7E+02 0.012 22.5 8.8 80 71-152 88-178 (220)
380 PF01487 DHquinase_I: Type I 3 21.0 2E+02 0.0044 24.5 5.0 52 18-77 12-63 (224)
381 PRK07328 histidinol-phosphatas 20.9 5.8E+02 0.012 22.4 11.4 109 18-144 142-255 (269)
382 cd01309 Met_dep_hydrolase_C Me 20.9 4.2E+02 0.0091 24.4 7.5 63 57-123 205-279 (359)
383 cd06842 PLPDE_III_Y4yA_like Ty 20.9 4.3E+02 0.0093 25.1 7.7 13 104-116 67-79 (423)
384 PRK06038 N-ethylammeline chlor 20.8 7.2E+02 0.016 23.4 9.4 50 70-123 242-297 (430)
385 PRK06886 hypothetical protein; 20.7 6.7E+02 0.015 23.1 8.7 110 4-123 146-280 (329)
386 PRK15447 putative protease; Pr 20.7 6.4E+02 0.014 22.8 9.7 52 19-77 17-70 (301)
387 smart00732 YqgFc Likely ribonu 20.6 3.3E+02 0.0071 19.5 5.8 53 16-73 37-89 (99)
388 cd01293 Bact_CD Bacterial cyto 20.6 4.5E+02 0.0098 23.8 7.6 61 59-123 222-307 (398)
389 cd08559 GDPD_periplasmic_GlpQ_ 20.6 4.3E+02 0.0093 23.7 7.3 57 55-113 109-183 (296)
390 PRK15108 biotin synthase; Prov 20.5 5E+02 0.011 24.0 7.8 71 53-123 109-192 (345)
391 PRK09045 N-ethylammeline chlor 20.5 7.3E+02 0.016 23.4 9.4 50 70-123 254-309 (443)
392 cd03174 DRE_TIM_metallolyase D 20.5 5.5E+02 0.012 22.0 10.1 125 15-146 17-165 (265)
393 PF02677 DUF208: Uncharacteriz 20.4 1.7E+02 0.0036 24.9 4.2 72 49-121 36-111 (176)
394 PRK10415 tRNA-dihydrouridine s 20.4 6.6E+02 0.014 22.9 11.0 92 55-150 119-227 (321)
395 PRK06687 chlorohydrolase; Vali 20.3 3E+02 0.0066 25.7 6.5 50 70-123 248-303 (419)
396 PRK12595 bifunctional 3-deoxy- 20.3 7.2E+02 0.016 23.3 10.4 91 59-150 216-325 (360)
397 cd00019 AP2Ec AP endonuclease 20.3 1.7E+02 0.0037 25.7 4.5 48 51-98 119-175 (279)
398 COG0402 SsnA Cytosine deaminas 20.3 7.1E+02 0.015 23.4 9.0 107 3-123 184-305 (421)
399 PF02796 HTH_7: Helix-turn-hel 20.2 64 0.0014 20.5 1.3 22 217-238 24-45 (45)
400 COG1212 KdsB CMP-2-keto-3-deox 20.0 5.9E+02 0.013 22.8 7.6 71 80-154 32-106 (247)
401 cd00951 KDGDH 5-dehydro-4-deox 20.0 6.3E+02 0.014 22.5 10.7 68 15-88 19-89 (289)
No 1
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=100.00 E-value=8.1e-56 Score=392.85 Aligned_cols=197 Identities=38% Similarity=0.483 Sum_probs=182.5
Q ss_pred ceeeccccccccCChhHHHHHHHHhhc-CCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccchHH
Q 025333 2 DWVCFIFRFVQERTPNWFSTLKEFFEI-TPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFG 80 (254)
Q Consensus 2 ~~~G~HP~~~~~~~~~~l~~l~~ll~~-~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a~~ 80 (254)
.++|+||++..+..++.++.|.+++.+ ++++|||||||||++.... .++.|+++|++||++|+++++||+||+|+|++
T Consensus 59 ~~~G~HP~~~~~~~~~~~~~l~~~~~~~~~vvaIGEiGLDy~~~~~~-~~~~Q~~~F~~ql~lA~~~~lPviIH~R~A~~ 137 (256)
T COG0084 59 AAVGVHPLDADEHSEEDLEELEQLAEHHPKVVAIGEIGLDYYWDKEP-DKERQEEVFEAQLELAKELNLPVIIHTRDAHE 137 (256)
T ss_pred EEEeeCCCccccccHHHHHHHHHHHhcCCCeEEEEecccCccccccc-cHHHHHHHHHHHHHHHHHcCCCEEEEccccHH
Confidence 368999999445568889999999985 8999999999999985322 68899999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCcEEeecccccccchHHHHHHHHhCCCCcEEEecCCCCCCchhhhh
Q 025333 81 DLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQKAKKMLKVVPSERILLETDAPDALPKAELN 160 (254)
Q Consensus 81 ~~l~il~~~~~~~~~~IiH~fsg~~e~~~~~l~~G~y~s~~~~~~~~~~~~~~~~l~~ip~driLlETD~P~~~p~~~~~ 160 (254)
+++++|++.+. +.++|+|||||+.+++++++++|+||||||.+|+.+..+++++++.+|+||||+|||+||+.|.|++
T Consensus 138 d~~~iL~~~~~-~~~gi~HcFsGs~e~a~~~~d~G~yisisG~itfk~a~~~~ev~~~iPldrLL~ETDsPyl~P~p~r- 215 (256)
T COG0084 138 DTLEILKEEGA-PVGGVLHCFSGSAEEARKLLDLGFYISISGIVTFKNAEKLREVARELPLDRLLLETDAPYLAPVPYR- 215 (256)
T ss_pred HHHHHHHhcCC-CCCEEEEccCCCHHHHHHHHHcCeEEEECceeecCCcHHHHHHHHhCCHhHeEeccCCCCCCCcCCC-
Confidence 99999999874 4679999999999999999999999999999999888999999999999999999999999998765
Q ss_pred cccccCCCCCCcccccccccCCCCCCCCCccccccCCCCCCCCCCCCCCcccHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 025333 161 SLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAI 240 (254)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~neP~~l~~v~~~lA~i~~~~~eev~~~~~~N~~ 240 (254)
| ++|+|+++..|++.||+++|+++++|++++++|++
T Consensus 216 -----------------------------------G---------krNeP~~v~~v~~~iAelk~~~~eeva~~t~~N~~ 251 (256)
T COG0084 216 -----------------------------------G---------KRNEPAYVRHVAEKLAELKGISAEEVAEITTENAK 251 (256)
T ss_pred -----------------------------------C---------CCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4 89999999999999999999999999999999999
Q ss_pred HhcCC
Q 025333 241 RLFSY 245 (254)
Q Consensus 241 ~~f~~ 245 (254)
++|++
T Consensus 252 ~lf~~ 256 (256)
T COG0084 252 RLFGL 256 (256)
T ss_pred HHhcC
Confidence 99985
No 2
>PRK10425 DNase TatD; Provisional
Probab=100.00 E-value=1.9e-52 Score=372.92 Aligned_cols=201 Identities=25% Similarity=0.351 Sum_probs=177.5
Q ss_pred ceeeccccccccCChhHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccchHHH
Q 025333 2 DWVCFIFRFVQERTPNWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGD 81 (254)
Q Consensus 2 ~~~G~HP~~~~~~~~~~l~~l~~ll~~~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a~~~ 81 (254)
.++|+|||++.+..++.++.|.+++..++++|||||||||++. ....+.|+++|++||++|.++++||+||||+++++
T Consensus 57 ~~~GiHP~~~~~~~~~~~~~l~~~~~~~~~vaIGEiGLDy~~~--~~~~~~Q~~vF~~ql~lA~~~~~Pv~iH~r~a~~~ 134 (258)
T PRK10425 57 STAGVHPHDSSQWQAATEEAIIELAAQPEVVAIGECGLDFNRN--FSTPEEQERAFVAQLAIAAELNMPVFMHCRDAHER 134 (258)
T ss_pred EEEEeCcCccccCCHHHHHHHHHhccCCCEEEEeeeeeccccC--CCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCchHH
Confidence 3689999999887788899999999888899999999999853 23678999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCcEEeeccccccc-chHHHHHHHHhCCCCcEEEecCCCCCCchhhhh
Q 025333 82 LLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSM-KAQKAKKMLKVVPSERILLETDAPDALPKAELN 160 (254)
Q Consensus 82 ~l~il~~~~~~~~~~IiH~fsg~~e~~~~~l~~G~y~s~~~~~~~~-~~~~~~~~l~~ip~driLlETD~P~~~p~~~~~ 160 (254)
++++|+++.+...++|+|||+|+.+.++++++.|+||||+|.+++. +..+++++++.+|+||||+|||+||+.|.|.+
T Consensus 135 ~l~iL~~~~~~~~~~i~H~fsG~~~~~~~~l~~G~~~si~g~i~~~~~~~~~~~~~~~ipldrlLlETDaP~l~P~~~~- 213 (258)
T PRK10425 135 FMALLEPWLDKLPGAVLHCFTGTREEMQACLARGLYIGITGWVCDERRGLELRELLPLIPAERLLLETDAPYLLPRDLT- 213 (258)
T ss_pred HHHHHHHhccCCCCeEEEecCCCHHHHHHHHHCCCEEEECceeecccccHHHHHHHHhCChHHEEEeccCCCCCCCCcC-
Confidence 9999998632223689999999999999999999999999987654 35678999999999999999999999987643
Q ss_pred cccccCCCCCCcccccccccCCCCCCCCCccccccCCCCCCCCCCCCCCcccHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 025333 161 SLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAI 240 (254)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~neP~~l~~v~~~lA~i~~~~~eev~~~~~~N~~ 240 (254)
|+ +.+++|+|++|+.|++.||+++|++++++++++++|++
T Consensus 214 -----------------------------------~~-----~~~~~n~P~~i~~v~~~iA~l~~~~~~~v~~~~~~N~~ 253 (258)
T PRK10425 214 -----------------------------------PK-----PASRRNEPAFLPHILQRIAHWRGEDAAWLAATTDANAR 253 (258)
T ss_pred -----------------------------------CC-----CCCCCCCcHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 10 01378999999999999999999999999999999999
Q ss_pred HhcCC
Q 025333 241 RLFSY 245 (254)
Q Consensus 241 ~~f~~ 245 (254)
++|++
T Consensus 254 ~lf~~ 258 (258)
T PRK10425 254 TLFGL 258 (258)
T ss_pred HHhCc
Confidence 99985
No 3
>PRK10812 putative DNAse; Provisional
Probab=100.00 E-value=2.4e-51 Score=367.15 Aligned_cols=202 Identities=28% Similarity=0.399 Sum_probs=182.6
Q ss_pred ceeeccccccccCChhHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccchHHH
Q 025333 2 DWVCFIFRFVQERTPNWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGD 81 (254)
Q Consensus 2 ~~~G~HP~~~~~~~~~~l~~l~~ll~~~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a~~~ 81 (254)
.++|+|||++.+ +..++.|.+++.+++++|||||||||++. ..+.+.|+++|++|+++|+++++||+||||+++++
T Consensus 62 ~~~GiHP~~~~~--~~~~~~l~~~~~~~~vvaIGEiGLD~~~~--~~~~~~Q~~vf~~ql~lA~e~~~Pv~iH~r~a~~~ 137 (265)
T PRK10812 62 FSCGVHPLNQDE--PYDVEELRRLAAEEGVVAMGETGLDYYYT--PETKVRQQESFRHHIQIGRELNKPVIVHTRDARAD 137 (265)
T ss_pred EEEEeCCCCCCC--hhHHHHHHHHhcCCCEEEEEeeecCcCCC--CCCHHHHHHHHHHHHHHHHHhCCCeEEEeeCchHH
Confidence 368999999864 45688899999888999999999999863 23689999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCcEEeecccccccchHHHHHHHHhCCCCcEEEecCCCCCCchhhhhc
Q 025333 82 LLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQKAKKMLKVVPSERILLETDAPDALPKAELNS 161 (254)
Q Consensus 82 ~l~il~~~~~~~~~~IiH~fsg~~e~~~~~l~~G~y~s~~~~~~~~~~~~~~~~l~~ip~driLlETD~P~~~p~~~~~~ 161 (254)
++++|++++..+.++|+|||+|+.+++++++++|+||||+|.+++.+.+.++++++.+|+||||+|||+||+.|.|.+
T Consensus 138 ~l~iL~~~~~~~~~~v~H~fsG~~~~a~~~~~~G~~is~~g~~t~~~~~~~~~~~~~ipldrlLlETD~P~~~p~~~~-- 215 (265)
T PRK10812 138 TLAILREEKVTDCGGVLHCFTEDRETAGKLLDLGFYISFSGIVTFRNAEQLRDAARYVPLDRLLVETDSPYLAPVPHR-- 215 (265)
T ss_pred HHHHHHhhcCCCCCEEEEeecCCHHHHHHHHHCCCEEEECeeeecCccHHHHHHHHhCChhhEEEecCCCCCCCcCCC--
Confidence 999999876444578999999999999999999999999999888778889999999999999999999999887643
Q ss_pred ccccCCCCCCcccccccccCCCCCCCCCccccccCCCCCCCCCCCCCCcccHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 025333 162 LFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIR 241 (254)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~neP~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~ 241 (254)
| ++|+|++|+.+++.+|+++|++++++++++++|+.+
T Consensus 216 ----------------------------------g---------~~n~P~~i~~v~~~ia~l~g~~~eei~~~~~~N~~~ 252 (265)
T PRK10812 216 ----------------------------------G---------KENQPAMVRDVAEYMAVLKGVSVEELAQVTTDNFAR 252 (265)
T ss_pred ----------------------------------C---------CCCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3 789999999999999999999999999999999999
Q ss_pred hcCCCCCcccc
Q 025333 242 LFSYEGSKILT 252 (254)
Q Consensus 242 ~f~~~~~~~~~ 252 (254)
+|++...+|-+
T Consensus 253 lf~~~~~~~~~ 263 (265)
T PRK10812 253 LFHIDASRLQS 263 (265)
T ss_pred HHCCChHhhhc
Confidence 99998777643
No 4
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=100.00 E-value=2.7e-51 Score=365.52 Aligned_cols=196 Identities=26% Similarity=0.363 Sum_probs=178.0
Q ss_pred ceeeccccccccCChhHHHHHHHHhhc-C-CceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccchH
Q 025333 2 DWVCFIFRFVQERTPNWFSTLKEFFEI-T-PAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAF 79 (254)
Q Consensus 2 ~~~G~HP~~~~~~~~~~l~~l~~ll~~-~-~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a~ 79 (254)
.++|+|||++.+..++.++.+++++.. + +++|||||||||++. ...++.|+++|++||++|.++++||+||||+++
T Consensus 61 ~~~GiHP~~~~~~~~~~~~~l~~~l~~~~~~~~aIGEiGLD~~~~--~~~~~~Q~~vf~~ql~lA~~~~~Pv~iH~r~a~ 138 (258)
T PRK11449 61 AALGLHPGMLEKHSDVSLDQLQQALERRPAKVVAVGEIGLDLFGD--DPQFERQQWLLDEQLKLAKRYDLPVILHSRRTH 138 (258)
T ss_pred EEEeeCcCccccCCHHHHHHHHHHHHhCCCCEEEEEecccCCCCC--CCCHHHHHHHHHHHHHHHHHhCCCEEEEecCcc
Confidence 368999999988777888899888753 3 799999999999863 346789999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCcEEeecccccccchHHHHHHHHhCCCCcEEEecCCCCCCchhhh
Q 025333 80 GDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQKAKKMLKVVPSERILLETDAPDALPKAEL 159 (254)
Q Consensus 80 ~~~l~il~~~~~~~~~~IiH~fsg~~e~~~~~l~~G~y~s~~~~~~~~~~~~~~~~l~~ip~driLlETD~P~~~p~~~~ 159 (254)
++++++|++++. +.++|+|||+|+.+++++++++|+||||+|.+++.++++.+++++.+|+||||+|||+||++|.|.+
T Consensus 139 ~~~~~il~~~~~-~~~~i~H~fsG~~~~a~~~l~~G~~iS~~g~it~~~~~~~~~~~~~ipldriL~ETD~P~l~p~~~~ 217 (258)
T PRK11449 139 DKLAMHLKRHDL-PRTGVVHGFSGSLQQAERFVQLGYKIGVGGTITYPRASKTRDVIAKLPLASLLLETDAPDMPLNGFQ 217 (258)
T ss_pred HHHHHHHHhcCC-CCCeEEEcCCCCHHHHHHHHHCCCEEEeCccccccCcHHHHHHHHhCChhhEEEecCCCCCCCCCCC
Confidence 999999998864 3368999999999999999999999999999988888899999999999999999999999876543
Q ss_pred hcccccCCCCCCcccccccccCCCCCCCCCccccccCCCCCCCCCCCCCCcccHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 025333 160 NSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNA 239 (254)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~neP~~l~~v~~~lA~i~~~~~eev~~~~~~N~ 239 (254)
| ++|+|++++.+++.+|++++++++++++++++|+
T Consensus 218 ------------------------------------~---------~~n~p~~~~~~~~~ia~l~~~~~~el~~~~~~N~ 252 (258)
T PRK11449 218 ------------------------------------G---------QPNRPEQAARVFDVLCELRPEPADEIAEVLLNNT 252 (258)
T ss_pred ------------------------------------C---------CCCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3 7899999999999999999999999999999999
Q ss_pred HHhcCC
Q 025333 240 IRLFSY 245 (254)
Q Consensus 240 ~~~f~~ 245 (254)
.++|++
T Consensus 253 ~~lf~~ 258 (258)
T PRK11449 253 YTLFNV 258 (258)
T ss_pred HHHhCc
Confidence 999985
No 5
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=100.00 E-value=1.3e-51 Score=366.40 Aligned_cols=197 Identities=40% Similarity=0.558 Sum_probs=171.1
Q ss_pred ceeeccccccccCChhHHHHHHHH--hhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccchH
Q 025333 2 DWVCFIFRFVQERTPNWFSTLKEF--FEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAF 79 (254)
Q Consensus 2 ~~~G~HP~~~~~~~~~~l~~l~~l--l~~~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a~ 79 (254)
.++|+|||++....++.++.|+++ +.+++++|||||||||++. ...+++.|+++|++||++|.++++||+||||+++
T Consensus 57 ~~~GiHP~~~~~~~~~~~~~l~~l~~~~~~~~~aIGEiGLD~~~~-~~~~~~~Q~~vF~~ql~lA~~~~~pv~iH~r~a~ 135 (255)
T PF01026_consen 57 PALGIHPWEAHEVNEEDLEELEELINLNRPKVVAIGEIGLDYYWR-NEEDKEVQEEVFERQLELAKELNLPVSIHCRKAH 135 (255)
T ss_dssp EEE---GGGGGGHSHHHHHHHHHHHHHTSTTEEEEEEEEEETTTT-SSSGHHHHHHHHHHHHHHHHHHTCEEEEEEESHH
T ss_pred EEecCCcchhhhhhHHHHHHHHHHHHhccccceeeeeeccCcccc-cCCcHHHHHHHHHHHHHHHHHhCCcEEEecCCcH
Confidence 478999999998777778888888 8889999999999999654 4568899999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCcEEeecccccccchHHHHHHHHhCCCCcEEEecCCCCCCchhhh
Q 025333 80 GDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQKAKKMLKVVPSERILLETDAPDALPKAEL 159 (254)
Q Consensus 80 ~~~l~il~~~~~~~~~~IiH~fsg~~e~~~~~l~~G~y~s~~~~~~~~~~~~~~~~l~~ip~driLlETD~P~~~p~~~~ 159 (254)
+++++++++++....++|+|||+|+.++++++++.|+||||++.+++.++++.+++++.+|+||||+|||+||+.|.|.+
T Consensus 136 ~~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~~~~g~~~S~~~~~~~~~~~~~~~~~~~ip~drillETD~P~~~~~~~~ 215 (255)
T PF01026_consen 136 EELLEILKEYGPPNLRVIFHCFSGSPEEAKKFLDLGCYFSFSGAITFKNSKKVRELIKAIPLDRILLETDAPYLAPDPYR 215 (255)
T ss_dssp HHHHHHHHHTTGGTSEEEETT--S-HHHHHHHHHTTEEEEEEGGGGSTTSHHHHHHHHHS-GGGEEEE-BTTSSECTTST
T ss_pred HHHHHHHHhccccceeEEEecCCCCHHHHHHHHhcCceEEecccccccccHHHHHHHhcCChhhEEEcCCCCcCCccccC
Confidence 99999999998533489999999999999999999999999999887767889999999999999999999999886653
Q ss_pred hcccccCCCCCCcccccccccCCCCCCCCCccccccCCCCCCCCCCCCCCcccHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 025333 160 NSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNA 239 (254)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~neP~~l~~v~~~lA~i~~~~~eev~~~~~~N~ 239 (254)
| .+|+|.+|+.+++.+|++++++++++++++++|+
T Consensus 216 ------------------------------------~---------~~~~p~~i~~~~~~la~~~~~~~e~~~~~~~~N~ 250 (255)
T PF01026_consen 216 ------------------------------------G---------KPNEPSNIPKVAQALAEIKGISLEELAQIIYENA 250 (255)
T ss_dssp ------------------------------------T---------SE--GGGHHHHHHHHHHHHTSTHHHHHHHHHHHH
T ss_pred ------------------------------------C---------CCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2 7899999999999999999999999999999999
Q ss_pred HHhcC
Q 025333 240 IRLFS 244 (254)
Q Consensus 240 ~~~f~ 244 (254)
.++|+
T Consensus 251 ~r~f~ 255 (255)
T PF01026_consen 251 KRLFG 255 (255)
T ss_dssp HHHHT
T ss_pred HHHhC
Confidence 99996
No 6
>KOG3020 consensus TatD-related DNase [Replication, recombination and repair]
Probab=100.00 E-value=1.1e-46 Score=337.77 Aligned_cols=212 Identities=38% Similarity=0.516 Sum_probs=182.1
Q ss_pred ceeeccccccccCCh-----hHHHHHHHHhhc---CCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEE
Q 025333 2 DWVCFIFRFVQERTP-----NWFSTLKEFFEI---TPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASI 73 (254)
Q Consensus 2 ~~~G~HP~~~~~~~~-----~~l~~l~~ll~~---~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvil 73 (254)
.++|+|||++.++.+ .+++.|..++.. ++++|||||||||.+.. ..+.+.|+.||++|++||..+++|++|
T Consensus 75 ~t~G~HP~~~~~~~~~~~~~~~~~~L~~~~~~~~~~k~vAiGEcGLD~~r~~-~~~~~~Qk~vFekQl~LA~~~~~Pl~i 153 (296)
T KOG3020|consen 75 PTFGVHPHFSQEFSDQSRKEKFLDTLLSIIENGFLPKVVAIGECGLDYDRLQ-FSDKEEQKTVFEKQLDLAKRLKLPLFI 153 (296)
T ss_pred eccCcCCCcccchhhccchhhHHHHHHHHHhhcccCCeEEeeccccccchhc-cCChHHHHHHHHHHHHHHHHccCCeee
Confidence 368999999998766 489999999887 89999999999998752 678999999999999999999999999
Q ss_pred eccchHHHHHHHHHhcCCCCC-cEEEEeCCCCHHHHHHHHHCCcEEeecccccccchHHHHHHHHhCCCCcEEEecCCCC
Q 025333 74 HCVRAFGDLLEIMKSVGPFPD-GVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQKAKKMLKVVPSERILLETDAPD 152 (254)
Q Consensus 74 H~~~a~~~~l~il~~~~~~~~-~~IiH~fsg~~e~~~~~l~~G~y~s~~~~~~~~~~~~~~~~l~~ip~driLlETD~P~ 152 (254)
|||.+.+++++|+++..+... ++|+|||+|+++.++.+++.|+|||++|.+++ .++..++++.||++|||+|||+||
T Consensus 154 H~r~a~~d~~eIl~~~~~~~~~~vvvHsFtGs~e~~~~~lk~~~yig~~g~~~k--~~e~~~vlr~iP~erlllETDsP~ 231 (296)
T KOG3020|consen 154 HCRSAHEDLLEILKRFLPECHKKVVVHSFTGSAEEAQKLLKLGLYIGFTGCSLK--TEENLEVLRSIPLERLLLETDSPY 231 (296)
T ss_pred echhhhHHHHHHHHHhccccCCceEEEeccCCHHHHHHHHHccEEecccceeee--chhhHHHHhhCCHhHeeeccCCcc
Confidence 999999999999999865444 78999999999999999999999999998764 458889999999999999999999
Q ss_pred CCchhhh-hcccccCCCCCCcccccccccCCCCCCCCCccccccCCCCCCCCCCCCCCcccHHHHHHHHHhccCCCHHHH
Q 025333 153 ALPKAEL-NSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEEL 231 (254)
Q Consensus 153 ~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~neP~~l~~v~~~lA~i~~~~~eev 231 (254)
+.|++.. .....+. -++.+..+..++|+|+++..+++.+|++++++.+++
T Consensus 232 ~~pk~~~~~~~~~~~-----------------------------~~~~~~~~~~~~neP~~~~~~~e~va~~k~~~~ee~ 282 (296)
T KOG3020|consen 232 CGPKPSSHAGPKYVK-----------------------------TLFSESYPLKGRNEPCNVLQVAEVVAEAKDLDLEEV 282 (296)
T ss_pred ccCCccccccchhhh-----------------------------hhhhhhccccccCCchHHHHHHHHHHHhhcCCHHHH
Confidence 9997631 0000000 012223344689999999999999999999999999
Q ss_pred HHHHHHHHHHhcCC
Q 025333 232 AELSYRNAIRLFSY 245 (254)
Q Consensus 232 ~~~~~~N~~~~f~~ 245 (254)
++++++|+.++|++
T Consensus 283 ~~~~~~Nt~rl~~~ 296 (296)
T KOG3020|consen 283 AEATYENTIRLFKL 296 (296)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999974
No 7
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=100.00 E-value=6.9e-37 Score=268.00 Aligned_cols=196 Identities=33% Similarity=0.449 Sum_probs=171.6
Q ss_pred ceeeccccccccCChhHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccchHHH
Q 025333 2 DWVCFIFRFVQERTPNWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGD 81 (254)
Q Consensus 2 ~~~G~HP~~~~~~~~~~l~~l~~ll~~~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a~~~ 81 (254)
.++|+|||+........++++++++.++++++|||||+|++.. ....+.|.++|++|+++|+++|+||++||+++..+
T Consensus 57 ~~~GihP~~~~~~~~~~~~~l~~~l~~~~~~~iGEiGld~~~~--~~~~~~q~~~~~~~~~~a~~~~~pv~iH~~~~~~~ 134 (252)
T TIGR00010 57 AAVGVHPLDVDDDTKEDIKELERLAAHPKVVAIGETGLDYYKA--DEYKRRQEEVFRAQLQLAEELNLPVIIHARDAEED 134 (252)
T ss_pred EEEEeCcchhhcCCHHHHHHHHHHccCCCEEEEEecccCcCCC--CCCHHHHHHHHHHHHHHHHHhCCCeEEEecCccHH
Confidence 3689999998875677889999999888999999999998743 22357899999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCcEEeecccccccchHHHHHHHHhCCCCcEEEecCCCCCCchhhhhc
Q 025333 82 LLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQKAKKMLKVVPSERILLETDAPDALPKAELNS 161 (254)
Q Consensus 82 ~l~il~~~~~~~~~~IiH~fsg~~e~~~~~l~~G~y~s~~~~~~~~~~~~~~~~l~~ip~driLlETD~P~~~p~~~~~~ 161 (254)
++++++++++ ...+|+|||+|+.+.++++++.|+|+|+++.+++.+.+.++++++.+|.||||+|||+||+.|.+.+
T Consensus 135 ~~~~l~~~~~-~~~~i~H~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~dril~~TD~p~~~~~~~~-- 211 (252)
T TIGR00010 135 VLDILREEKP-KVGGVLHCFTGDAELAKKLLDLGFYISISGIVTFKNAKSLREVVRKIPLERLLVETDSPYLAPVPYR-- 211 (252)
T ss_pred HHHHHHhcCC-CCCEEEEccCCCHHHHHHHHHCCCeEeeceeEecCCcHHHHHHHHhCCHHHeEecccCCCCCCCCCC--
Confidence 9999999863 3467889999999999999999999999986655455678999999999999999999998653221
Q ss_pred ccccCCCCCCcccccccccCCCCCCCCCccccccCCCCCCCCCCCCCCcccHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 025333 162 LFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIR 241 (254)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~neP~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~ 241 (254)
| .+|.|.++..+++.+|.++|++++++.+++++|+.+
T Consensus 212 ----------------------------------~---------~~~~p~~i~~~~~~~a~~~g~~~~~~~~~~~~N~~~ 248 (252)
T TIGR00010 212 ----------------------------------G---------KRNEPAFVRYTVEAIAEIKGMDVEELAQITTKNAKR 248 (252)
T ss_pred ----------------------------------C---------CCCCChhHHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 2 678999999999999999999999999999999999
Q ss_pred hcCC
Q 025333 242 LFSY 245 (254)
Q Consensus 242 ~f~~ 245 (254)
+|++
T Consensus 249 ~~~~ 252 (252)
T TIGR00010 249 LFGL 252 (252)
T ss_pred HhCc
Confidence 9985
No 8
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=100.00 E-value=2.2e-36 Score=264.37 Aligned_cols=195 Identities=38% Similarity=0.492 Sum_probs=172.0
Q ss_pred ceeeccccccccCChhHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccchHHH
Q 025333 2 DWVCFIFRFVQERTPNWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGD 81 (254)
Q Consensus 2 ~~~G~HP~~~~~~~~~~l~~l~~ll~~~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a~~~ 81 (254)
.++|+|||++....++.++.++++++.+++++|||||||++.. ..+.+.|.++|++|+++|+++++||++||+++..+
T Consensus 57 ~~~G~hP~~~~~~~~~~~~~l~~~~~~~~~~~IGeiGld~~~~--~~~~~~q~~~~~~~~~~a~e~~~pv~iH~~~~~~~ 134 (251)
T cd01310 57 AAVGLHPHDADEHVDEDLDLLELLAANPKVVAIGEIGLDYYRD--KSPREVQKEVFRAQLELAKELNLPVVIHSRDAHED 134 (251)
T ss_pred EEEeeCcchhhcCCHHHHHHHHHHhcCCCEEEEEeeecCcCCC--CCCHHHHHHHHHHHHHHHHHhCCCeEEEeeCchHH
Confidence 3689999999887777889999999888899999999999853 22688999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCcEEeecccccccchHHHHHHHHhCCCCcEEEecCCCCCCchhhhhc
Q 025333 82 LLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQKAKKMLKVVPSERILLETDAPDALPKAELNS 161 (254)
Q Consensus 82 ~l~il~~~~~~~~~~IiH~fsg~~e~~~~~l~~G~y~s~~~~~~~~~~~~~~~~l~~ip~driLlETD~P~~~p~~~~~~ 161 (254)
+++++++++. ..++|+|||+|+.+.++++++.|+|||+++.+.+.+...++++++.+|+||||+|||+|+..+...+
T Consensus 135 ~~~l~~~~~~-~~~~i~H~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~dril~~TD~p~~~~~~~~-- 211 (251)
T cd01310 135 VLEILKEYGP-PKRGVFHCFSGSAEEAKELLDLGFYISISGIVTFKNANELREVVKEIPLERLLLETDSPYLAPVPFR-- 211 (251)
T ss_pred HHHHHHhcCC-CCCEEEEccCCCHHHHHHHHHcCCEEEeeeeeccCCCHHHHHHHHhCChHHEEEcccCCCCCCCCCC--
Confidence 9999999862 3568889999999999999999999999987655455678999999999999999999997653211
Q ss_pred ccccCCCCCCcccccccccCCCCCCCCCccccccCCCCCCCCCCCCCCcccHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 025333 162 LFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIR 241 (254)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~neP~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~ 241 (254)
| +.+.|.++..+++.+|..+|++.+++.+++++|+.+
T Consensus 212 ----------------------------------~---------~~~~~~~~~~~~~~la~~~gl~~e~~~~~~~~N~~~ 248 (251)
T cd01310 212 ----------------------------------G---------KRNEPAYVKHVAEKIAELKGISVEEVAEVTTENAKR 248 (251)
T ss_pred ----------------------------------C---------CCCCChhHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 1 568999999999999999999999999999999999
Q ss_pred hcC
Q 025333 242 LFS 244 (254)
Q Consensus 242 ~f~ 244 (254)
+|+
T Consensus 249 ll~ 251 (251)
T cd01310 249 LFG 251 (251)
T ss_pred HhC
Confidence 986
No 9
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=99.98 E-value=1.4e-31 Score=240.92 Aligned_cols=190 Identities=21% Similarity=0.139 Sum_probs=154.2
Q ss_pred eeeccccccc-----cCChhHH-HHHHHHh----hcC--CceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCc
Q 025333 3 WVCFIFRFVQ-----ERTPNWF-STLKEFF----EIT--PAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRP 70 (254)
Q Consensus 3 ~~G~HP~~~~-----~~~~~~l-~~l~~ll----~~~--~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lP 70 (254)
++|+||+... +...+.+ +.+.+.+ ... ++++|||||+|+. ..+.|+++|++|+++|+++|+|
T Consensus 78 ~~G~hp~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~i~~~~IGEigld~~------~~~~q~~~f~~~~~lA~~~~~P 151 (293)
T cd00530 78 ATGFYKDAFYPEWVRLRSVEELTDMLIREIEEGIEGTGIKAGIIKEAGGSPA------ITPLEEKVLRAAARAQKETGVP 151 (293)
T ss_pred ecccCCCccChHHHhhCCHHHHHHHHHHHHHhccccCCcCceEEEEeecCCC------CCHHHHHHHHHHHHHHHHHCCe
Confidence 5799998753 1221222 2222122 223 4468999999984 3478999999999999999999
Q ss_pred eEEeccc---hHHHHHHHHHhcCCCCCc-EEEEeC-CCCHHHHHHHHHCCcEEeeccccccc---------chHHHHHHH
Q 025333 71 ASIHCVR---AFGDLLEIMKSVGPFPDG-VIIHSY-LGSAEMVPELSKLGAYFSFSGFLMSM---------KAQKAKKML 136 (254)
Q Consensus 71 vilH~~~---a~~~~l~il~~~~~~~~~-~IiH~f-sg~~e~~~~~l~~G~y~s~~~~~~~~---------~~~~~~~~l 136 (254)
|++|+++ +..+++++|++.+..+.+ +|+||| +++.+.+++++++|+|++|++..++. +.+.+++++
T Consensus 152 v~iH~~~~~~~~~~~l~~l~~~g~~~~~~vi~H~~~~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~ 231 (293)
T cd00530 152 ISTHTQAGLTMGLEQLRILEEEGVDPSKVVIGHLDRNDDPDYLLKIAALGAYLEFDGIGKDKIFGYPSDETRADAVKALI 231 (293)
T ss_pred EEEcCCCCccccHHHHHHHHHcCCChhheEEeCCCCCCCHHHHHHHHhCCCEEEeCCCCcccccCCCCHHHHHHHHHHHH
Confidence 9999997 789999999988754444 566999 78899999999999999999876543 456688999
Q ss_pred HhCCCCcEEEecCCCCCCchhhhhcccccCCCCCCcccccccccCCCCCCCCCccccccCCCCCCCCCCCCCCcccHHHH
Q 025333 137 KVVPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNV 216 (254)
Q Consensus 137 ~~ip~driLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~neP~~l~~v 216 (254)
+.+|+||||+|||+|+..|.|.+ | .+|.|.++..+
T Consensus 232 ~~~~~d~ill~TD~p~~~~~~~~------------------------------------~---------~~~~~~~~~~~ 266 (293)
T cd00530 232 DEGYGDRLLLSHDVFRKSYLEKR------------------------------------Y---------GGHGYDYILTR 266 (293)
T ss_pred HCCCcCCEEEeCCcCchhhhhhc------------------------------------c---------CCCChHHHHHH
Confidence 99999999999999998775432 2 67899999999
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHHhc
Q 025333 217 LDYVASLLDMTKEELAELSYRNAIRLF 243 (254)
Q Consensus 217 ~~~lA~i~~~~~eev~~~~~~N~~~~f 243 (254)
+..+++.+|++.+++.+++++|+.++|
T Consensus 267 ~~~~~~~~g~~~e~i~~~~~~N~~~lf 293 (293)
T cd00530 267 FIPRLRERGVTEEQLDTILVENPARFL 293 (293)
T ss_pred HHHHHHHcCCCHHHHHHHHHHCHHHhC
Confidence 999999999999999999999999997
No 10
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=99.97 E-value=9.4e-30 Score=218.04 Aligned_cols=180 Identities=27% Similarity=0.385 Sum_probs=162.4
Q ss_pred eeeccccccccCChhHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccc-----
Q 025333 3 WVCFIFRFVQERTPNWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVR----- 77 (254)
Q Consensus 3 ~~G~HP~~~~~~~~~~l~~l~~ll~~~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~----- 77 (254)
++|+||.-++...+..++.|++++.+..++||||||||+.+ +.+.+||+.||+||++++.||+||+++
T Consensus 69 avGvHPr~iP~e~~~~l~~L~~~l~~e~VvAiGEiGLe~~t-------~~E~evf~~QL~LA~e~dvPviVHTPr~nK~e 141 (254)
T COG1099 69 AVGVHPRAIPPELEEVLEELEELLSNEDVVAIGEIGLEEAT-------DEEKEVFREQLELARELDVPVIVHTPRRNKKE 141 (254)
T ss_pred EeccCCCCCCchHHHHHHHHHhhcccCCeeEeeecccccCC-------HHHHHHHHHHHHHHHHcCCcEEEeCCCCcchh
Confidence 68999999987788889999999998889999999999874 358999999999999999999999997
Q ss_pred hHHHHHHHHHhcCCCCCcEEE-EeCCCCHHHHHHHHHCCcEEeecccccccchHHHHHHHHhCCCCcEEEecCCCCCCch
Q 025333 78 AFGDLLEIMKSVGPFPDGVII-HSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQKAKKMLKVVPSERILLETDAPDALPK 156 (254)
Q Consensus 78 a~~~~l~il~~~~~~~~~~Ii-H~fsg~~e~~~~~l~~G~y~s~~~~~~~~~~~~~~~~l~~ip~driLlETD~P~~~p~ 156 (254)
++..+++++.+.+..+..+|+ |+ +.+++..+++.+||+|++-.+..+...+..+++++++.+||++.||+.|.
T Consensus 142 ~t~~ildi~~~~~l~~~lvvIDH~---N~etv~~vld~e~~vGlTvqPgKlt~~eAveIV~ey~~~r~ilnSD~~s~--- 215 (254)
T COG1099 142 ATSKILDILIESGLKPSLVVIDHV---NEETVDEVLDEEFYVGLTVQPGKLTVEEAVEIVREYGAERIILNSDAGSA--- 215 (254)
T ss_pred HHHHHHHHHHHcCCChhheehhcc---cHHHHHHHHhccceEEEEecCCcCCHHHHHHHHHHhCcceEEEecccccc---
Confidence 578899999998877766777 76 48899999999999999988888888999999999999999999999773
Q ss_pred hhhhcccccCCCCCCcccccccccCCCCCCCCCccccccCCCCCCCCCCCCCCcccHHHHHHHHHhccCCCHHHHHHHHH
Q 025333 157 AELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSY 236 (254)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~neP~~l~~v~~~lA~i~~~~~eev~~~~~ 236 (254)
...|..+++++-.+ +.+|++.+++.+.++
T Consensus 216 --------------------------------------------------~sd~lavprtal~m-~~~gv~~~~i~kV~~ 244 (254)
T COG1099 216 --------------------------------------------------ASDPLAVPRTALEM-EERGVGEEEIEKVVR 244 (254)
T ss_pred --------------------------------------------------cccchhhhHHHHHH-HHhcCCHHHHHHHHH
Confidence 34688999999888 889999999999999
Q ss_pred HHHHHhcCCC
Q 025333 237 RNAIRLFSYE 246 (254)
Q Consensus 237 ~N~~~~f~~~ 246 (254)
+|+.+||++.
T Consensus 245 ~NA~~~~~l~ 254 (254)
T COG1099 245 ENALSFYGLS 254 (254)
T ss_pred HHHHHHhCcC
Confidence 9999999973
No 11
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=99.85 E-value=1.9e-20 Score=164.66 Aligned_cols=186 Identities=19% Similarity=0.231 Sum_probs=150.6
Q ss_pred eeeccccccc----c-C--------ChhHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 025333 3 WVCFIFRFVQ----E-R--------TPNWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKR 69 (254)
Q Consensus 3 ~~G~HP~~~~----~-~--------~~~~l~~l~~ll~~~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~l 69 (254)
.+|.||..+. . . ...-++....|+++++++||||+|.++|+.. ...++...++++..+++|++.|+
T Consensus 81 vvGvHPaE~~~l~e~~~~peea~e~m~~~lelA~k~v~eg~avaiGEvGrPHypVs-~~v~~~~n~vl~~a~elA~dvdc 159 (285)
T COG1831 81 VVGVHPAEVSRLAEAGRSPEEALEEMRHALELAAKLVEEGKAVAIGEVGRPHYPVS-EEVWEASNEVLEYAMELAKDVDC 159 (285)
T ss_pred EeccCHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHhccceeeeeccCCCCCCCC-HHHHHHHHHHHHHHHHHhhcCCC
Confidence 4799996543 1 1 1233666778889999999999999999863 45689999999999999999999
Q ss_pred ceEEeccch----HHHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCcEEeecccccccchHHHHHHHHhCCCCcEE
Q 025333 70 PASIHCVRA----FGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQKAKKMLKVVPSERIL 145 (254)
Q Consensus 70 PvilH~~~a----~~~~l~il~~~~~~~~~~IiH~fsg~~e~~~~~l~~G~y~s~~~~~~~~~~~~~~~~l~~ip~driL 145 (254)
||+||+.+. ..++.+++++.|..+.++|.|+-++.. ..+-..|++.|+... .+..+++++.- .|+|
T Consensus 160 ~vqLHtes~~~~~~~~i~~~ak~~G~~~~~VVkHha~p~v---~~~~~~Gi~pSV~as-----r~~v~~a~~~g--~~Fm 229 (285)
T COG1831 160 AVQLHTESLDEETYEEIAEMAKEAGIKPYRVVKHHAPPLV---LKCEEVGIFPSVPAS-----RKNVEDAAELG--PRFM 229 (285)
T ss_pred cEEEecCCCChHHHHHHHHHHHHhCCCcceeEeecCCccc---hhhhhcCcCCccccc-----HHHHHHHHhcC--CceE
Confidence 999999984 567788999999777788888765432 333348999998762 34678888876 6999
Q ss_pred EecCCCCCCchhhhhcccccCCCCCCcccccccccCCCCCCCCCccccccCCCCCCCCCCCCCCcccHHHHHHHHHhccC
Q 025333 146 LETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLD 225 (254)
Q Consensus 146 lETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~neP~~l~~v~~~lA~i~~ 225 (254)
+|||+-++..+| | ..-.|.++++.+..+.+...
T Consensus 230 mETDyIDDp~Rp--------------------------------------g---------avL~PktVPrr~~~i~~~g~ 262 (285)
T COG1831 230 METDYIDDPRRP--------------------------------------G---------AVLGPKTVPRRTREILEKGD 262 (285)
T ss_pred eecccccCcccC--------------------------------------C---------CcCCccchhHHHHHHHHhcC
Confidence 999999876555 2 56789999999999989888
Q ss_pred CCHHHHHHHHHHHHHHhcCCC
Q 025333 226 MTKEELAELSYRNAIRLFSYE 246 (254)
Q Consensus 226 ~~~eev~~~~~~N~~~~f~~~ 246 (254)
.+.|.+.++..+|..++|++.
T Consensus 263 ~~ee~vy~i~~E~pe~VYg~~ 283 (285)
T COG1831 263 LTEEDVYRIHVENPERVYGIE 283 (285)
T ss_pred CcHHHHHHHHHhCHHHHhCcc
Confidence 999999999999999999985
No 12
>TIGR03583 EF_0837 probable amidohydrolase EF_0837/AHA_3915. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown.
Probab=99.74 E-value=2.6e-17 Score=152.93 Aligned_cols=173 Identities=20% Similarity=0.248 Sum_probs=127.9
Q ss_pred ecccc-ccccCChhHHHHHHHHhhcCC--ceE---------EEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceE
Q 025333 5 CFIFR-FVQERTPNWFSTLKEFFEITP--AAA---------VGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPAS 72 (254)
Q Consensus 5 G~HP~-~~~~~~~~~l~~l~~ll~~~~--~~a---------IGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvi 72 (254)
|+||+ +..+.....++.+++++...+ +++ |||+|||- .+ |.+|+..+ .+++||+
T Consensus 117 G~~~~~~~~~~~~~~~~~l~~~~~~~~~~vv~~~~~~t~~~i~E~gl~~--------~~-----~~~~l~~~-~~~~pv~ 182 (365)
T TIGR03583 117 GLVAQDELADLSNLDASAVKQAVERYPDFIVGLKARMSKSVVGDNGIEP--------LE-----IAKQIQQE-NLELPLM 182 (365)
T ss_pred cccChhhhhChHHhHHHHHHHHHHhCcCcEEEEEEeecccccccCCcCH--------HH-----HHHHHHHh-cCCCcEE
Confidence 77863 444444445677776665433 444 78999972 11 45566666 7999999
Q ss_pred EeccchHHHHHHHHHhcCCCCCcEEEEeCCCCH-----------HHHHHHHHCCcEEeec-ccccccchHHHHHHHHhCC
Q 025333 73 IHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSA-----------EMVPELSKLGAYFSFS-GFLMSMKAQKAKKMLKVVP 140 (254)
Q Consensus 73 lH~~~a~~~~l~il~~~~~~~~~~IiH~fsg~~-----------e~~~~~l~~G~y~s~~-~~~~~~~~~~~~~~l~~ip 140 (254)
+|++++..+..++++.... ..++.|||+|+. +.++..+..|+|++++ +..++. .+ ....+..
T Consensus 183 vH~~~a~~~~~~i~~~~~~--g~~~~H~fng~~~~~~r~~g~~~~~~~~~l~~G~i~d~~hg~~~~~-~~-~~~~~~~-- 256 (365)
T TIGR03583 183 VHIGSAPPELDEILALMEK--GDVLTHCFNGKPNGILRETGEVKPSVLEAYNRGVILDVGHGTASFS-FH-VAEKAKR-- 256 (365)
T ss_pred EEeCCCccCHHHHHHHhcC--CCeeeeeecCCCCCCCCCcchHHHHHHHHHhCeEEEEeCCCCCCch-HH-HHHHHHh--
Confidence 9999998888888876532 136889999998 8888889999999998 665541 12 2222222
Q ss_pred CCcEEEecCCCCCCchhhhhcccccCCCCCCcccccccccCCCCCCCCCccccccCCCCCCCCCCCCCCccc-HHHHHHH
Q 025333 141 SERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPAN-IHNVLDY 219 (254)
Q Consensus 141 ~driLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~neP~~-l~~v~~~ 219 (254)
+++++|||+|+...+ | .+|.|.+ +..+++.
T Consensus 257 -~~~~~~td~~d~~~~---------------------------------------~---------~~~gp~~~l~~~~~~ 287 (365)
T TIGR03583 257 -AGIFPDTISTDIYIR---------------------------------------N---------RINGPVYSLATVMSK 287 (365)
T ss_pred -CCCCCcccccccccC---------------------------------------C---------CccCccccHHHHHHH
Confidence 578899999996211 2 5788988 9999999
Q ss_pred HHhccCCCHHHHHHHHHHHHHHhcCCCC
Q 025333 220 VASLLDMTKEELAELSYRNAIRLFSYEG 247 (254)
Q Consensus 220 lA~i~~~~~eev~~~~~~N~~~~f~~~~ 247 (254)
++ .+|++++++.+.++.|+.++|+++.
T Consensus 288 ~~-~~g~~~~ea~~~~t~npa~~~gl~~ 314 (365)
T TIGR03583 288 FL-ALGYSLEEVIEKVTKNAAEILKLTQ 314 (365)
T ss_pred HH-HcCCCHHHHHHHHHHHHHHHhCCCC
Confidence 98 5799999999999999999999963
No 13
>PRK09875 putative hydrolase; Provisional
Probab=99.61 E-value=7e-14 Score=126.96 Aligned_cols=188 Identities=17% Similarity=0.198 Sum_probs=129.4
Q ss_pred ccccccccCChh-----HHHHHHHHhhcC--CceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccc-
Q 025333 6 FIFRFVQERTPN-----WFSTLKEFFEIT--PAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVR- 77 (254)
Q Consensus 6 ~HP~~~~~~~~~-----~l~~l~~ll~~~--~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~- 77 (254)
+||.|+...+.+ .++++.+.+... +.-.|||||.++.. ..+.++++|+++.+.+.+.|+||++|+..
T Consensus 88 ~~p~~~~~~~~e~la~~~i~ei~~Gi~gt~ikaGvIGeiG~~~~~-----it~~E~kvl~Aaa~a~~~TG~pi~~Ht~~~ 162 (292)
T PRK09875 88 FFPEHVATRSVQELAQEMVDEIEQGIDGTELKAGIIAEIGSSEGK-----ITPLEEKVFIAAALAHNQTGRPISTHTSFS 162 (292)
T ss_pred cCCHHHhcCCHHHHHHHHHHHHHHhhccCCCcccEEEEEecCCCC-----CCHHHHHHHHHHHHHHHHHCCcEEEcCCCc
Confidence 467666655433 344555556533 45679999999853 23688999999999999999999999865
Q ss_pred -hHHHHHHHHHhcCCCCCcEEE-Ee-CCCCHHHHHHHHHCCcEEeeccc--ccccchHHHHHHHHhC---C-CCcEEEec
Q 025333 78 -AFGDLLEIMKSVGPFPDGVII-HS-YLGSAEMVPELSKLGAYFSFSGF--LMSMKAQKAKKMLKVV---P-SERILLET 148 (254)
Q Consensus 78 -a~~~~l~il~~~~~~~~~~Ii-H~-fsg~~e~~~~~l~~G~y~s~~~~--~~~~~~~~~~~~l~~i---p-~driLlET 148 (254)
...++++++++.|..+.++++ |. .+.+.+..++++++|+|++|... ..+...++..+++..+ + .||||+-+
T Consensus 163 ~~g~e~l~il~e~Gvd~~rvvi~H~d~~~d~~~~~~l~~~G~~l~fD~~g~~~~~pd~~r~~~i~~L~~~Gy~drilLS~ 242 (292)
T PRK09875 163 TMGLEQLALLQAHGVDLSRVTVGHCDLKDNLDNILKMIDLGAYVQFDTIGKNSYYPDEKRIAMLHALRDRGLLNRVMLSM 242 (292)
T ss_pred cchHHHHHHHHHcCcCcceEEEeCCCCCCCHHHHHHHHHcCCEEEeccCCCcccCCHHHHHHHHHHHHhcCCCCeEEEeC
Confidence 345679999999987788887 85 34578899999999999999631 1111122333444443 6 99999999
Q ss_pred CCCCCCchhhhhcccccCCCCCCcccccccccCCCCCCCCCccccccCCCCCCCCCCCCCCcccHHHHHHHHHhccCCCH
Q 025333 149 DAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTK 228 (254)
Q Consensus 149 D~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~neP~~l~~v~~~lA~i~~~~~ 228 (254)
|..-..+... + | +.....-+..++-.+ +-+|++.
T Consensus 243 D~~~~~~~~~-----------------------------------~-g---------g~G~~~i~~~~ip~L-~~~Gvse 276 (292)
T PRK09875 243 DITRRSHLKA-----------------------------------N-G---------GYGYDYLLTTFIPQL-RQSGFSQ 276 (292)
T ss_pred CCCCcccccc-----------------------------------c-C---------CCChhHHHHHHHHHH-HHcCCCH
Confidence 9842211000 0 1 111223344555555 4469999
Q ss_pred HHHHHHHHHHHHHhcC
Q 025333 229 EELAELSYRNAIRLFS 244 (254)
Q Consensus 229 eev~~~~~~N~~~~f~ 244 (254)
+++.+.+.+|..|+|.
T Consensus 277 ~~I~~m~~~NP~r~~~ 292 (292)
T PRK09875 277 ADVDVMLRENPSQFFQ 292 (292)
T ss_pred HHHHHHHHHCHHHHhC
Confidence 9999999999999985
No 14
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=99.43 E-value=6.4e-12 Score=119.33 Aligned_cols=161 Identities=17% Similarity=0.181 Sum_probs=118.7
Q ss_pred HHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccchH-HHHHHHHHhcCCCCCcE
Q 025333 18 WFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAF-GDLLEIMKSVGPFPDGV 96 (254)
Q Consensus 18 ~l~~l~~ll~~~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a~-~~~l~il~~~~~~~~~~ 96 (254)
.++.++++++.+.++++||+ +||.... ...+.|.++++.|+++|+||.+|++... .++..+++ .+...
T Consensus 91 ~~~~i~~l~~~~~vvglgE~-md~~~v~------~~~~~l~~~i~~A~~~g~~v~~Ha~g~~~~~L~a~l~-aGi~~--- 159 (422)
T cd01295 91 TAEDIKELLEHPEVVGLGEV-MDFPGVI------EGDDEMLAKIQAAKKAGKPVDGHAPGLSGEELNAYMA-AGIST--- 159 (422)
T ss_pred CHHHHHHHhcCCCCcEEEEe-ccCcccc------CCcHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHH-cCCCC---
Confidence 37888888887889999999 9986321 1234788999999999999999999866 56666665 44321
Q ss_pred EEEeCCCCHHHHHHHHHCCcEEeecccccccchHHHHHHHHhCC---CCcEEEecCCCCCCchhhhhcccccCCCCCCcc
Q 025333 97 IIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQKAKKMLKVVP---SERILLETDAPDALPKAELNSLFLVDGDPSLPQ 173 (254)
Q Consensus 97 IiH~fsg~~e~~~~~l~~G~y~s~~~~~~~~~~~~~~~~l~~ip---~driLlETD~P~~~p~~~~~~~~~~~~~~~~~~ 173 (254)
-| ++++.+.+.+.+++|+|+++..... ...++.+++.++ ..+++++||+|...+...
T Consensus 160 -dH-~~~~~eea~e~l~~G~~i~i~~g~~---~~~~~~~~~~l~~~~~~~i~l~TD~~~~~~~~~--------------- 219 (422)
T cd01295 160 -DH-EAMTGEEALEKLRLGMYVMLREGSI---AKNLEALLPAITEKNFRRFMFCTDDVHPDDLLS--------------- 219 (422)
T ss_pred -Cc-CCCcHHHHHHHHHCCCEEEEECccc---HhhHHHHHHhhhhccCCeEEEEcCCCCchhhhh---------------
Confidence 25 6778888888889999999985322 344566667666 589999999984222110
Q ss_pred cccccccCCCCCCCCCccccccCCCCCCCCCCCCCCcccHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCC
Q 025333 174 ELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYE 246 (254)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~neP~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~ 246 (254)
...+..+++ ++...|++++++.+.++.|+.++|++.
T Consensus 220 ------------------------------------~g~~~~v~r-~a~~~g~s~~eal~~aT~n~A~~~gl~ 255 (422)
T cd01295 220 ------------------------------------EGHLDYIVR-RAIEAGIPPEDAIQMATINPAECYGLH 255 (422)
T ss_pred ------------------------------------cchHHHHHH-HHHHcCCCHHHHHHHHhHHHHHHcCCC
Confidence 013445554 455679999999999999999999983
No 15
>cd01307 Met_dep_hydrolase_B Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.38 E-value=2.2e-11 Score=112.21 Aligned_cols=134 Identities=20% Similarity=0.249 Sum_probs=96.4
Q ss_pred HHHHHHHHHhcCCceEEeccchHHHHHHHHHhcCCCCCcEEEEeCCCCH-----------HHHHHHHHCCcEEeec-ccc
Q 025333 57 FRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSA-----------EMVPELSKLGAYFSFS-GFL 124 (254)
Q Consensus 57 f~~ql~lA~~~~lPvilH~~~a~~~~l~il~~~~~~~~~~IiH~fsg~~-----------e~~~~~l~~G~y~s~~-~~~ 124 (254)
+++++++|+++|+||++||+++..++.++++.... ..+++|||+|+. +.++++++.|+||+++ |..
T Consensus 151 l~~~~~~a~~~~~pi~vH~~~~~~~~~~~~~~l~~--g~~~~H~~~g~~~~~~~~~~~~~~~~~~~~~~G~~~d~~~G~~ 228 (338)
T cd01307 151 LELAKKIAKEADLPLMVHIGSPPPILDEVVPLLRR--GDVLTHCFNGKPNGIVDEEGEVLPLVRRARERGVIFDVGHGTA 228 (338)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHhcC--CCEEEeccCCCCCCCCCCCCcHHHHHHHHHhCCEEEEeCCCCC
Confidence 77999999999999999999987777766665432 246889999976 7889999999999988 421
Q ss_pred cccchHHHHHHHHhCCCCcEEEecCCCCCCchhhhhcccccCCCCCCcccccccccCCCCCCCCCccccccCCCCCCCCC
Q 025333 125 MSMKAQKAKKMLKVVPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPK 204 (254)
Q Consensus 125 ~~~~~~~~~~~l~~ip~driLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 204 (254)
.......+++++. +.-...++||.|. + +
T Consensus 229 -~~~~~~~~~l~~~-G~~~~~lstD~~~---~---------------------------------------~-------- 256 (338)
T cd01307 229 -SFSFRVARAAIAA-GLLPDTISSDIHG---R---------------------------------------N-------- 256 (338)
T ss_pred -chhHHHHHHHHHC-CCCCeeecCCccc---c---------------------------------------C--------
Confidence 1122334445543 2211124555532 1 1
Q ss_pred CCCCCccc-HHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCC
Q 025333 205 ETLNHPAN-IHNVLDYVASLLDMTKEELAELSYRNAIRLFSYE 246 (254)
Q Consensus 205 ~~~neP~~-l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~ 246 (254)
.+|.|.+ +..+++.+ ..+|++.+++.++++.|+.++|+++
T Consensus 257 -~~~~p~~~l~~~l~~l-~~~gi~~ee~~~~~T~NpA~~lgl~ 297 (338)
T cd01307 257 -RTNGPVYALATTLSKL-LALGMPLEEVIEAVTANPARMLGLA 297 (338)
T ss_pred -CCCCccccHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHcCCC
Confidence 3467777 57777777 5679999999999999999999994
No 16
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=99.20 E-value=2e-10 Score=100.69 Aligned_cols=133 Identities=20% Similarity=0.181 Sum_probs=84.3
Q ss_pred ChhHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEecc-----------chHHHHH
Q 025333 15 TPNWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCV-----------RAFGDLL 83 (254)
Q Consensus 15 ~~~~l~~l~~ll~~~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~-----------~a~~~~l 83 (254)
.++.++++++.+.+..+++|. +..+..... ..+. ......+++|+++|+||.+|+. -....+.
T Consensus 83 ~~~~~~~l~~~~~~~g~~Gv~-l~~~~~~~~-~~~~----~~~~~~~~~~~~~~~pv~~H~g~~~~~~~~~~~~~~~~~~ 156 (273)
T PF04909_consen 83 PEDAVEELERALQELGFRGVK-LHPDLGGFD-PDDP----RLDDPIFEAAEELGLPVLIHTGMTGFPDAPSDPADPEELE 156 (273)
T ss_dssp HHHHHHHHHHHHHTTTESEEE-EESSETTCC-TTSG----HCHHHHHHHHHHHT-EEEEEESHTHHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHhccccceeeeE-ecCCCCccc-cccH----HHHHHHHHHHHhhccceeeeccccchhhhhHHHHHHHHHH
Confidence 346788888888777787776 554443211 1111 1116888999999999999965 1233445
Q ss_pred HHHHhcCCCCCcEEEEeCCCC---HHHHHHHHH--CCcEEeeccccc-------ccchHHHHHHHHhCCCCcEEEecCCC
Q 025333 84 EIMKSVGPFPDGVIIHSYLGS---AEMVPELSK--LGAYFSFSGFLM-------SMKAQKAKKMLKVVPSERILLETDAP 151 (254)
Q Consensus 84 ~il~~~~~~~~~~IiH~fsg~---~e~~~~~l~--~G~y~s~~~~~~-------~~~~~~~~~~l~~ip~driLlETD~P 151 (254)
+++.+++. .++|+-++.++ .+.+-.+++ .++|+.+++... ....+.+..++..++.||||+.||+|
T Consensus 157 ~~~~~~P~--l~ii~~H~G~~~~~~~~~~~l~~~~~nvy~d~s~~~~~~~~~~~~~~~~~l~~~~~~~g~drilfGSD~P 234 (273)
T PF04909_consen 157 ELLERFPD--LRIILAHLGGPFPWWEEALRLLDRFPNVYVDLSGIPPFWYFWPPSFDRPFLRRAVDEFGPDRILFGSDYP 234 (273)
T ss_dssp THHHHSTT--SEEEESGGGTTHHHHHHHHHHHHHHTTEEEECHSHHSSEEEETTHHCHHHHHHHHHHHTGGGEEEE--TT
T ss_pred HHHHHhcC--CeEEEecCcccchhHHHHHHHHHhCCcccccccccccccccCcccccHHHHHHHHHHhCCceEEecCCCC
Confidence 67777743 57787333344 334334443 389999987421 12345678889999999999999999
Q ss_pred CCCc
Q 025333 152 DALP 155 (254)
Q Consensus 152 ~~~p 155 (254)
+...
T Consensus 235 ~~~~ 238 (273)
T PF04909_consen 235 HPDG 238 (273)
T ss_dssp SSTH
T ss_pred CCCc
Confidence 9654
No 17
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=99.08 E-value=8.4e-10 Score=101.08 Aligned_cols=165 Identities=19% Similarity=0.202 Sum_probs=110.5
Q ss_pred CceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccchH---HHHHHHHHhcCCCCCcEEE-EeC-CCC
Q 025333 30 PAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAF---GDLLEIMKSVGPFPDGVII-HSY-LGS 104 (254)
Q Consensus 30 ~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a~---~~~l~il~~~~~~~~~~Ii-H~f-sg~ 104 (254)
+.-.|||+|-... -.+.++++|++....+++.|+||++|+.... .+.+++|.+.|..+.++|+ |.- +.+
T Consensus 123 kaG~Ik~~~~~~~------it~~E~k~lrAaa~A~~~TG~pI~~H~~~g~~~~~e~~~il~e~Gv~~~rvvigH~D~~~D 196 (308)
T PF02126_consen 123 KAGIIKEIGSSNP------ITPLEEKVLRAAARAHKETGAPISTHTGRGTRMGLEQLDILEEEGVDPSRVVIGHMDRNPD 196 (308)
T ss_dssp -ESEEEEEEBTTB------CEHHHHHHHHHHHHHHHHHT-EEEEEESTTGTCHHHHHHHHHHTT--GGGEEETSGGGST-
T ss_pred chhheeEeeccCC------CCHHHHHHHHHHHHHHHHhCCeEEEcCCCCCcCHHHHHHHHHHcCCChhHeEEeCCCCCCC
Confidence 4558998876522 3478999999999999999999999998754 7899999999988889988 854 345
Q ss_pred HHHHHHHHHCCcEEeeccc-----cc-------cc----chHHHHHHHHhCCCCcEEEecCCCCCCchhhhhcccccCCC
Q 025333 105 AEMVPELSKLGAYFSFSGF-----LM-------SM----KAQKAKKMLKVVPSERILLETDAPDALPKAELNSLFLVDGD 168 (254)
Q Consensus 105 ~e~~~~~l~~G~y~s~~~~-----~~-------~~----~~~~~~~~l~~ip~driLlETD~P~~~p~~~~~~~~~~~~~ 168 (254)
.+..+++++.|+|++|... -. +. +.+.+..++++--.||||+-+|.-.-.... +
T Consensus 197 ~~y~~~la~~G~~l~~D~~g~~~~g~~~~~~~~~~~d~~ri~~l~~L~~~Gy~~qIlLS~D~~~k~~~~------~---- 266 (308)
T PF02126_consen 197 LDYHRELADRGVYLEFDTIGREFSGKDKNPRVGYPPDEERIELLKELIEEGYADQILLSHDIGRKSRLY------R---- 266 (308)
T ss_dssp HHHHHHHHHTT-EEEETTTT-B-TTTTTCHSCTTS-HHHHHHHHHHHHHTTTGGGEEE-HHHESEEGSS------S----
T ss_pred HHHHHHHHhcCCEEEecCCcccccCcccCccCCCCCHHHHHHHHHHHHHcCCcCcEEEecccccccccc------c----
Confidence 6778899999999999754 00 11 123356777777789999999986511100 0
Q ss_pred CCCcccccccccCCCCCCCCCccccccCCCCCCCCCCCCCCcccHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcC
Q 025333 169 PSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFS 244 (254)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~neP~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~ 244 (254)
+.| .+.....-+..++-.+ +-+|++.+++.+++.+|..|+|.
T Consensus 267 -------------------------~gg--------~g~~~~~i~~~fiP~L-~~~Gv~~~~i~~ilv~NP~r~lt 308 (308)
T PF02126_consen 267 -------------------------YGG--------GGYGYIYILTRFIPRL-KERGVSEEDIDKILVENPARILT 308 (308)
T ss_dssp -------------------------CCH--------HHHTTTHHHHTHHHHH-HHTTS-HHHHHHHHTHHHHHHHS
T ss_pred -------------------------cCC--------CCccHHHHHHHHHHHH-HHcCCCHHHHHHHHHHCHHHHcC
Confidence 000 0111111122333344 45799999999999999999984
No 18
>PRK09237 dihydroorotase; Provisional
Probab=99.07 E-value=9.5e-09 Score=96.05 Aligned_cols=166 Identities=17% Similarity=0.192 Sum_probs=108.0
Q ss_pred HHHHHHHHhhc--CCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccchHHHHHHHHHhcCCCCCc
Q 025333 18 WFSTLKEFFEI--TPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDG 95 (254)
Q Consensus 18 ~l~~l~~ll~~--~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a~~~~l~il~~~~~~~~~ 95 (254)
..+.+.+++.+ ..+++++|. +++... ..... ..++....+|.+.|+||.+|+++......++++-... ..
T Consensus 135 ~~~~~~~~~~~~~~~v~glk~~-~~~~v~-~~~~~----~~~~~~~~~a~~~g~~v~~H~~~~~~~~~~l~~~l~~--g~ 206 (380)
T PRK09237 135 DADAVAEAVKRNPDFIVGIKAR-MSSSVV-GDNGI----EPLELAKAIAAEANLPLMVHIGNPPPSLEEILELLRP--GD 206 (380)
T ss_pred CHHHHHHHHHhCcCcEEEEEEE-Eecccc-cccCC----chHHHHHHHHHhcCCCEEEEcCCCCCCHHHHHhhccC--CC
Confidence 46777788764 347788763 554311 01001 2344555667799999999998754333333333222 23
Q ss_pred EEEEeCCCCH-----------HHHHHHHHCCcEEeec-ccccccchHHHHHHHHhC-CCCcEEEecCCCCCCchhhhhcc
Q 025333 96 VIIHSYLGSA-----------EMVPELSKLGAYFSFS-GFLMSMKAQKAKKMLKVV-PSERILLETDAPDALPKAELNSL 162 (254)
Q Consensus 96 ~IiH~fsg~~-----------e~~~~~l~~G~y~s~~-~~~~~~~~~~~~~~l~~i-p~driLlETD~P~~~p~~~~~~~ 162 (254)
++.|||+|+. +.+.++++.|+|++++ |.. ....+..+++++.- ..+ .++||.. +.
T Consensus 207 ~~~H~~~~~~~~~~~~~~~~~~~a~~~l~~G~~~~ig~g~~-~~~~~~~~~l~~~g~~~~--~l~tD~~---~~------ 274 (380)
T PRK09237 207 ILTHCFNGKPNRILDEDGELRPSVLEALERGVRLDVGHGTA-SFSFKVAEAAIAAGILPD--TISTDIY---CR------ 274 (380)
T ss_pred EEEecCCCCCCCccCCCCcchHHHHHHHHCCEEEEecCCCC-cccHHHHHHHHHCCCCce--EEECCCC---CC------
Confidence 6889999987 7899999999999997 321 12234455666542 122 5788752 11
Q ss_pred cccCCCCCCcccccccccCCCCCCCCCccccccCCCCCCCCCCCCCCccc-HHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 025333 163 FLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPAN-IHNVLDYVASLLDMTKEELAELSYRNAIR 241 (254)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~neP~~-l~~v~~~lA~i~~~~~eev~~~~~~N~~~ 241 (254)
..+|.|.. +..++..+++ +|++++++.+.++.|+.+
T Consensus 275 ------------------------------------------~~~~~~~~~l~~~~~~~~~-~g~~~~~al~~aT~n~A~ 311 (380)
T PRK09237 275 ------------------------------------------NRINGPVYSLATVMSKFLA-LGMPLEEVIAAVTKNAAD 311 (380)
T ss_pred ------------------------------------------CcccchHhHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH
Confidence 02456655 7788877765 799999999999999999
Q ss_pred hcCCC
Q 025333 242 LFSYE 246 (254)
Q Consensus 242 ~f~~~ 246 (254)
+|+++
T Consensus 312 ~lgl~ 316 (380)
T PRK09237 312 ALRLP 316 (380)
T ss_pred HcCCC
Confidence 99985
No 19
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=99.01 E-value=3.6e-08 Score=89.74 Aligned_cols=162 Identities=18% Similarity=0.120 Sum_probs=105.0
Q ss_pred hHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccchH------------HHHHH
Q 025333 17 NWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAF------------GDLLE 84 (254)
Q Consensus 17 ~~l~~l~~ll~~~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a~------------~~~l~ 84 (254)
...+++++.+++..++++---+...... .. . +.+...++.|.++|+||+||+.... -.+-+
T Consensus 113 ~a~~E~er~v~~~gf~g~~l~p~~~~~~--~~---~--~~~~pi~~~a~~~gvpv~ihtG~~~~~~~~~~~~~~p~~~~~ 185 (293)
T COG2159 113 AAAEELERRVRELGFVGVKLHPVAQGFY--PD---D--PRLYPIYEAAEELGVPVVIHTGAGPGGAGLEKGHSDPLYLDD 185 (293)
T ss_pred HHHHHHHHHHHhcCceEEEecccccCCC--CC---C--hHHHHHHHHHHHcCCCEEEEeCCCCCCcccccCCCCchHHHH
Confidence 3466777777766555554333322221 11 1 2288999999999999999999731 24557
Q ss_pred HHHhcCCCCCcEEE-EeC-CCCHHHH--HHHH-HCCcEEeeccccc-ccchHHHHHHHHhCCCCcEEEecCCCCCCchhh
Q 025333 85 IMKSVGPFPDGVII-HSY-LGSAEMV--PELS-KLGAYFSFSGFLM-SMKAQKAKKMLKVVPSERILLETDAPDALPKAE 158 (254)
Q Consensus 85 il~~~~~~~~~~Ii-H~f-sg~~e~~--~~~l-~~G~y~s~~~~~~-~~~~~~~~~~l~~ip~driLlETD~P~~~p~~~ 158 (254)
++++++. .++|+ |+- +..+..- ..+. ..++|+.+++... +.....++.+.+ .+.||||+.||+|+..|.-
T Consensus 186 va~~fP~--l~IVl~H~G~~~p~~~~a~~~a~~~~nvy~d~s~~~~~~~~~~~~~~~~~-~~~dkilFGSD~P~~~~~~- 261 (293)
T COG2159 186 VARKFPE--LKIVLGHMGEDYPWELEAIELAYAHPNVYLDTSGVRPKYFAPPLLEFLKE-LGPDKILFGSDYPAIHPEV- 261 (293)
T ss_pred HHHHCCC--CcEEEEecCCCCchhHHHHHHHHhCCCceeeeeccccccCChHHHHHHHh-cccCeEEecCCCCCcCHHH-
Confidence 8888753 45666 762 1232222 2222 2499999998743 233334455555 9999999999999865421
Q ss_pred hhcccccCCCCCCcccccccccCCCCCCCCCccccccCCCCCCCCCCCCCCcccHHHHHHHHHhccCCCHHHHHHHHHHH
Q 025333 159 LNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRN 238 (254)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~neP~~l~~v~~~lA~i~~~~~eev~~~~~~N 238 (254)
-+..+ ...+++.+...++++.|
T Consensus 262 ---------------------------------------------------------~l~~~-~~l~l~~e~k~kiL~~N 283 (293)
T COG2159 262 ---------------------------------------------------------WLAEL-DELGLSEEVKEKILGEN 283 (293)
T ss_pred ---------------------------------------------------------HHHHH-HhcCCCHHHHHHHHHHh
Confidence 11223 44688899999999999
Q ss_pred HHHhcCCCC
Q 025333 239 AIRLFSYEG 247 (254)
Q Consensus 239 ~~~~f~~~~ 247 (254)
+.|+|++..
T Consensus 284 A~rll~l~~ 292 (293)
T COG2159 284 AARLLGLDP 292 (293)
T ss_pred HHHHhCcCC
Confidence 999999864
No 20
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=98.93 E-value=1.2e-08 Score=88.21 Aligned_cols=99 Identities=22% Similarity=0.217 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHhcCCceEEeccchHH---HHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCcEEeecccccccc-
Q 025333 53 QVGVFRQQLELAKELKRPASIHCVRAFG---DLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMK- 128 (254)
Q Consensus 53 Q~~vf~~ql~lA~~~~lPvilH~~~a~~---~~l~il~~~~~~~~~~IiH~fsg~~e~~~~~l~~G~y~s~~~~~~~~~- 128 (254)
+.+.|++++++|+++++||.+|+..... .+.++++........++.|++..+.+.++.+.+.|+++++++......
T Consensus 131 ~~~~~~~~~~~a~~~~~~i~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 210 (275)
T cd01292 131 SDESLRRVLEEARKLGLPVVIHAGELPDPTRALEDLVALLRLGGRVVIGHVSHLDPELLELLKEAGVSLEVCPLSNYLLG 210 (275)
T ss_pred CcHHHHHHHHHHHHcCCeEEEeeCCcccCccCHHHHHHHHhcCCCEEEECCccCCHHHHHHHHHcCCeEEECCccccccc
Confidence 5689999999999999999999987543 244444433211123455999888889999999999999997543221
Q ss_pred -----hHHHHHHHHhCCCCcEEEecCCCCC
Q 025333 129 -----AQKAKKMLKVVPSERILLETDAPDA 153 (254)
Q Consensus 129 -----~~~~~~~l~~ip~driLlETD~P~~ 153 (254)
...++++++.. .++++.||+|..
T Consensus 211 ~~~~~~~~~~~~~~~g--~~~~lgTD~~~~ 238 (275)
T cd01292 211 RDGEGAEALRRLLELG--IRVTLGTDGPPH 238 (275)
T ss_pred CCcCCcccHHHHHHCC--CcEEEecCCCCC
Confidence 23355666554 799999999874
No 21
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=98.79 E-value=2.4e-07 Score=83.74 Aligned_cols=195 Identities=17% Similarity=0.061 Sum_probs=126.3
Q ss_pred eccccccccCChhHH-HHHHHHhhcC------CceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccc
Q 025333 5 CFIFRFVQERTPNWF-STLKEFFEIT------PAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVR 77 (254)
Q Consensus 5 G~HP~~~~~~~~~~l-~~l~~ll~~~------~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~ 77 (254)
.+||.|....+.+.+ +.+-+-+.++ +.-.|||+|---. -....+++|++..+.+++.+.|+++|+..
T Consensus 101 ~~~p~~~~~~~i~~~ae~~v~ei~~Gi~gT~ikAGiIk~~~~~~~------iTp~Eek~lrAaA~A~~~Tg~Pi~tHt~~ 174 (316)
T COG1735 101 AFHPEYFALRPIEELAEFVVKEIEEGIAGTGIKAGIIKEAGGSPA------ITPLEEKSLRAAARAHKETGAPISTHTPA 174 (316)
T ss_pred ccchhHHhhCCHHHHHHHHHHHHHhcccCCccccceeeeccCccc------CCHHHHHHHHHHHHHhhhcCCCeEEeccc
Confidence 467766655552222 2222222323 5668999986543 23578999999999999999999999997
Q ss_pred h--HHHHHHHHHhcCCCCCcEEE-EeC-CCCHHHHH-HHHHCCcEEeeccc--c-cccchHH---HHHHHHhCCCCcEEE
Q 025333 78 A--FGDLLEIMKSVGPFPDGVII-HSY-LGSAEMVP-ELSKLGAYFSFSGF--L-MSMKAQK---AKKMLKVVPSERILL 146 (254)
Q Consensus 78 a--~~~~l~il~~~~~~~~~~Ii-H~f-sg~~e~~~-~~l~~G~y~s~~~~--~-~~~~~~~---~~~~l~~ip~driLl 146 (254)
. .-+.++++.+.|.++.++++ |+- +.+....+ .+..+|.|++|.+. . .+....+ ..+.+++--.|+|++
T Consensus 175 gt~g~eq~~il~~egvdl~~v~igH~d~n~dd~~y~~~l~~~Ga~l~fD~iG~d~y~pd~~r~~~~~~l~~~gy~d~i~l 254 (316)
T COG1735 175 GTMGLEQLRILAEEGVDLRKVSIGHMDPNTDDVYYQKKLADRGAFLEFDRIGKDKYYPDEDRIAPLLELVARGYADLILL 254 (316)
T ss_pred hhhhHHHHHHHHHcCCChhHeeEeccCCCCChHHHHHHHHhcCceEEecccCccccCcHHHhhhhHHHHHHhhHhhheec
Confidence 4 45788999999988888877 876 55444444 55667999999864 1 2222222 334555656789998
Q ss_pred e-cCCCCCCchhhhhcccccCCCCCCcccccccccCCCCCCCCCccccccCCCCCCCCCCCCCCcccHHHHHHHHHhccC
Q 025333 147 E-TDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLD 225 (254)
Q Consensus 147 E-TD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~neP~~l~~v~~~lA~i~~ 225 (254)
. .|+-+..-.+. ... ......+.+.+|....---.+-+|
T Consensus 255 s~d~~~~~~~~~~-------~~~---------------------------------~~~~~~~g~~~I~~~fIP~Lk~~G 294 (316)
T COG1735 255 SHDDICLSDDVFL-------KSM---------------------------------LKANGGWGYGYILNDFIPRLKRHG 294 (316)
T ss_pred ccchhhhhhhHHH-------Hhh---------------------------------hhhcCCcccchhhHhhHHHHHHcC
Confidence 8 22222110000 000 001245667778844433347799
Q ss_pred CCHHHHHHHHHHHHHHhcCC
Q 025333 226 MTKEELAELSYRNAIRLFSY 245 (254)
Q Consensus 226 ~~~eev~~~~~~N~~~~f~~ 245 (254)
++.+.+...+.+|..|+|..
T Consensus 295 vde~~i~~mlvdNP~r~f~~ 314 (316)
T COG1735 295 VDEETIDTMLVDNPARLFTA 314 (316)
T ss_pred CCHHHHHHHHhhCHHHHhcc
Confidence 99999999999999999975
No 22
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.
Probab=98.35 E-value=7.4e-06 Score=73.00 Aligned_cols=97 Identities=15% Similarity=0.182 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhcCCceEEeccch-HHHHHHHHHhcCCCCCcEEEEeCCC----------CHHHHHHHHH-CCcEEeecc
Q 025333 55 GVFRQQLELAKELKRPASIHCVRA-FGDLLEIMKSVGPFPDGVIIHSYLG----------SAEMVPELSK-LGAYFSFSG 122 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~a-~~~~l~il~~~~~~~~~~IiH~fsg----------~~e~~~~~l~-~G~y~s~~~ 122 (254)
..+.+.++.+.++|+||.+|+... ...+.++++++ . .++|+-|+.. .+..+-++++ -++|+-+|+
T Consensus 110 ~~~~~~~~~~~~~gl~v~~~~~~~~l~~l~~l~~~~-~--l~ivldH~G~p~~~~~~~~~~~~~~l~~l~~pNV~~k~Sg 186 (263)
T cd01311 110 DELDEIAKRAAELGWHVQVYFDAVDLPALLPFLQKL-P--VAVVIDHFGRPDVTKGVDGAEFAALLKLIEEGNVWVKVSG 186 (263)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCHhhHHHHHHHHHHC-C--CCEEEECCCCCCCCCCCCCHhHHHHHHHHhcCCEEEEecc
Confidence 456788999999999999999753 45677788887 3 4577733321 1122222334 389999998
Q ss_pred cccc-------cchHHHHHHHHhCCCCcEEEecCCCCCC
Q 025333 123 FLMS-------MKAQKAKKMLKVVPSERILLETDAPDAL 154 (254)
Q Consensus 123 ~~~~-------~~~~~~~~~l~~ip~driLlETD~P~~~ 154 (254)
.... .......+.+...+.||||+.||+|...
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~g~dRlmfGSD~P~~~ 225 (263)
T cd01311 187 PYRLSVKQEAYADVIAFARQIVAAAPDRLVWGTDWPHPR 225 (263)
T ss_pred hhhcCCCCCCHHHHHHHHHHHHHhCCCcEEEeCCCCCCC
Confidence 5321 0112222222255999999999999864
No 23
>TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA. The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases.
Probab=98.26 E-value=1.6e-05 Score=75.16 Aligned_cols=170 Identities=17% Similarity=0.221 Sum_probs=109.1
Q ss_pred cCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC----Cc--eEEeccch---HHHHHHHHHhcCCCCCcEEE
Q 025333 28 ITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELK----RP--ASIHCVRA---FGDLLEIMKSVGPFPDGVII 98 (254)
Q Consensus 28 ~~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~----lP--vilH~~~a---~~~~l~il~~~~~~~~~~Ii 98 (254)
.+++++||||=+..++... .-.+-|++..+.|+..+ +| |++|..+. .+++++++++.. +..
T Consensus 149 ~d~iiG~~~ia~sd~r~~~-----~~~~~l~~~~~~~~~~g~~~~~~g~~~vH~g~~~~~l~~l~~~~~~~d-----i~~ 218 (389)
T TIGR01975 149 IDKVIGVGEIAISDHRSAQ-----PTVEHLTNMAAEARVGGLLGGKPGIVNFHVGDSKRALQPIYELVENTD-----VPI 218 (389)
T ss_pred ehhhcccceEEEccCcCCC-----CCHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCchhhHHHHHHHHHhcC-----CCh
Confidence 4578899999887665322 23345666666677777 99 99999985 567778877653 345
Q ss_pred EeCCCC--------HHHHHHHHHCCcEEeecccccc--------cchHHHHHHHHh-CCCCcEEEecCCCCCCchhhhhc
Q 025333 99 HSYLGS--------AEMVPELSKLGAYFSFSGFLMS--------MKAQKAKKMLKV-VPSERILLETDAPDALPKAELNS 161 (254)
Q Consensus 99 H~fsg~--------~e~~~~~l~~G~y~s~~~~~~~--------~~~~~~~~~l~~-ip~driLlETD~P~~~p~~~~~~ 161 (254)
|+|.+. .+..-+++++|.++.++...++ ...+.++.+++. ++++||.+-||+.-..|....
T Consensus 219 ~~f~pth~~r~~~l~~~~i~~~~~gg~iDv~~~~~~~~l~~~~~~~~~~~~~~~~~Gv~~~~i~isSD~~gs~p~~~~-- 296 (389)
T TIGR01975 219 TQFLPTHINRNVPLFEAGLEFAKKGGTIDLTSSIDPQFRKEGEVAPAEGIKKALEAGVPLEKVTFSSDGNGSQPFFDE-- 296 (389)
T ss_pred hheecCccCCCHHHHHHHHHHHHhCCcEEEeCCCCccchhccccChHHHHHHHHHcCCCcceEEEEeCCCCCCCcccc--
Confidence 777554 2344566778999998853221 112345666665 588999999998632232100
Q ss_pred ccccCCCCCCcccccccccCCCCCCCCCccccccCCCCCCCCCCCCCCcccHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 025333 162 LFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIR 241 (254)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~neP~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~ 241 (254)
. |... .........+...+..+.+..+++++++.+.++.|..+
T Consensus 297 ----~-----------------------------g~~~----~~g~g~~~sl~~~~~~lv~~g~ls~~eal~~~T~npA~ 339 (389)
T TIGR01975 297 ----N-----------------------------GELT----GLGVGSFETLFEEVREAVKDGDVPLEKALRVITSNVAG 339 (389)
T ss_pred ----c-----------------------------cccc----cCCcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 0 1000 00111223445566666666679999999999999999
Q ss_pred hcCCC
Q 025333 242 LFSYE 246 (254)
Q Consensus 242 ~f~~~ 246 (254)
+++++
T Consensus 340 ~Lgl~ 344 (389)
T TIGR01975 340 VLNLT 344 (389)
T ss_pred HhCCC
Confidence 99986
No 24
>COG3964 Predicted amidohydrolase [General function prediction only]
Probab=98.01 E-value=0.00011 Score=66.72 Aligned_cols=133 Identities=18% Similarity=0.260 Sum_probs=91.0
Q ss_pred HHHHHHHHHhcCCceEEeccch---HHHHHHHHHhcCCCCCcEEEEeCCCC-----------HHHHHHHHHCCcEEeecc
Q 025333 57 FRQQLELAKELKRPASIHCVRA---FGDLLEIMKSVGPFPDGVIIHSYLGS-----------AEMVPELSKLGAYFSFSG 122 (254)
Q Consensus 57 f~~ql~lA~~~~lPvilH~~~a---~~~~l~il~~~~~~~~~~IiH~fsg~-----------~e~~~~~l~~G~y~s~~~ 122 (254)
++..+++|+++++|+++|.... .++++++|++- -+|-|||+|. ...++++.++|+-|.++-
T Consensus 174 l~la~~ia~~~klPlmvHigePp~~~dEvlerL~~G-----DIitHcfngkpn~~l~~dg~vr~~vrra~erGV~fD~gh 248 (386)
T COG3964 174 LTLALRIANDLKLPLMVHIGEPPVLMDEVLERLRRG-----DIITHCFNGKPNTILTDDGVVRAEVRRARERGVIFDAGH 248 (386)
T ss_pred HHHHHHHHhhcCCceEEecCCCCccHHHHHHhccCC-----ceeeeeccCCCCCccccchhHHHHHHHHHhcceEEEccC
Confidence 4567889999999999999873 46666766532 2677999875 345677788999999985
Q ss_pred cccccchHHHHHHHHhCCCCcEEEecCCCCCCchhhhhcccccCCCCCCcccccccccCCCCCCCCCccccccCCCCCCC
Q 025333 123 FLMSMKAQKAKKMLKVVPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTL 202 (254)
Q Consensus 123 ~~~~~~~~~~~~~l~~ip~driLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 202 (254)
...+++..-.+.++.+ ++=--.+-||-.-.
T Consensus 249 G~asfsf~vAr~aia~-GllP~~ISSDlh~~------------------------------------------------- 278 (386)
T COG3964 249 GRASFSFNVARRAIAN-GLLPDIISSDLHTI------------------------------------------------- 278 (386)
T ss_pred CcceeeHHHHHHHHhc-CCCcceeeccceee-------------------------------------------------
Confidence 4445555666777766 33333455655321
Q ss_pred CCCCCCCcc-cHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCCC
Q 025333 203 PKETLNHPA-NIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEG 247 (254)
Q Consensus 203 ~~~~~neP~-~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~~ 247 (254)
.+.|-|. .|..+...+-. .|++..+|.+.+++|...+.+++.
T Consensus 279 --~~~n~Pv~dla~~mSKlla-lgmpl~~Vi~avT~npA~~i~l~~ 321 (386)
T COG3964 279 --TKLNGPVYDLAWIMSKLLA-LGMPLTDVINAVTHNPAVLIGLAE 321 (386)
T ss_pred --eecCchHHHHHHHHHHHHH-cCCcHHHHHHHHhcCHHHHhCccc
Confidence 1345553 24444444423 599999999999999999998864
No 25
>PRK12394 putative metallo-dependent hydrolase; Provisional
Probab=97.95 E-value=0.0005 Score=64.41 Aligned_cols=139 Identities=14% Similarity=0.183 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHhcCCceEEeccchHHHHHHHHHhcCCCCCcEEEEeCCCC-----------HHHHHHHHHCCcEEeecc
Q 025333 54 VGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGS-----------AEMVPELSKLGAYFSFSG 122 (254)
Q Consensus 54 ~~vf~~ql~lA~~~~lPvilH~~~a~~~~l~il~~~~~~~~~~IiH~fsg~-----------~e~~~~~l~~G~y~s~~~ 122 (254)
.+.|++++++|+++|+|+.+|+..+..+..+++.-... ..++.||+.+. .+.+.++.+.|+++.+.-
T Consensus 172 ~~~l~~~~~~A~~~g~~v~iH~~e~~~~~~~~~~~l~~--g~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 249 (379)
T PRK12394 172 LKPLTETLRIANDLRCPVAVHSTHPVLPMKELVSLLRR--GDIIAHAFHGKGSTILTEEGAVLAEVRQARERGVIFDAAN 249 (379)
T ss_pred hHHHHHHHHHHHHcCCCEEEEeCCCCccHHHHHHhcCC--CCEEEecCCCCCCCcCCCCCCChHHHHHHHhCCeEEEecC
Confidence 56899999999999999999998754444544443332 23567987633 456677888999885442
Q ss_pred cccccchHHHHHHHHhCCCCcEEEecCCCCCCchhhhhcccccCCCCCCcccccccccCCCCCCCCCccccccCCCCCCC
Q 025333 123 FLMSMKAQKAKKMLKVVPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTL 202 (254)
Q Consensus 123 ~~~~~~~~~~~~~l~~ip~driLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 202 (254)
.....+.+...++++.- .-...|-||.+-..-
T Consensus 250 g~s~~~~~~~~~~l~~G-~~~~~lgTD~~~~~~----------------------------------------------- 281 (379)
T PRK12394 250 GRSHFDMNVARRAIANG-FLPDIISSDLSTITK----------------------------------------------- 281 (379)
T ss_pred CccccchHHHHHHHHCC-CCceEEECCCCCCCc-----------------------------------------------
Confidence 21122234556677652 123478999964210
Q ss_pred CCCCCCCcccHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCC
Q 025333 203 PKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYE 246 (254)
Q Consensus 203 ~~~~~neP~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~ 246 (254)
..+....+..++..+. -.+++++++.+..+.|..++|++.
T Consensus 282 ---~~~~~~~l~~~~~~~~-~~~~~~~~~~~~at~~~a~~~g~~ 321 (379)
T PRK12394 282 ---LAWPVYSLPWVLSKYL-ALGMALEDVINACTHTPAVLMGMA 321 (379)
T ss_pred ---ccCccchHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHhCCC
Confidence 0011134555555443 368999999999999999999996
No 26
>PRK10657 isoaspartyl dipeptidase; Provisional
Probab=97.93 E-value=0.00048 Score=64.37 Aligned_cols=177 Identities=15% Similarity=0.180 Sum_probs=100.2
Q ss_pred CceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-C--ceEEeccc---hHHHHHHHHHhcCCCCCcEEEEeCCC
Q 025333 30 PAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELK-R--PASIHCVR---AFGDLLEIMKSVGPFPDGVIIHSYLG 103 (254)
Q Consensus 30 ~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~-l--PvilH~~~---a~~~~l~il~~~~~~~~~~IiH~fsg 103 (254)
++.++||+++-.+.... +-+...+...+..+.++..+ + |+++|+.. +.+.+.+++++.|.....++.|+..-
T Consensus 151 ~~~g~g~~~~~~~~~~~--~~~~~l~~~~~~a~~~~~~~g~~~~i~vH~~~~~~~l~~v~~~l~~~Gv~~~~~~~~H~~~ 228 (388)
T PRK10657 151 KVIGVGEIAISDHRSSQ--PTVEELARLAAEARVGGLLSGKAGIVHVHMGDGKKGLQPLFELLENTDIPISQFLPTHVNR 228 (388)
T ss_pred hhhCcceeeeccCCCCC--CCHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCchHHHHHHHHHHHhcCCCcceeeCcccCC
Confidence 34568888776653211 12333333444444444332 2 89999773 33444467777775444455544322
Q ss_pred ---CHHHHHHHHHCCcEEeecc-ccc--c----cchHHHHHHHHhC-CCCcEEEecCCCCCCchhhhhcccccCCCCCCc
Q 025333 104 ---SAEMVPELSKLGAYFSFSG-FLM--S----MKAQKAKKMLKVV-PSERILLETDAPDALPKAELNSLFLVDGDPSLP 172 (254)
Q Consensus 104 ---~~e~~~~~l~~G~y~s~~~-~~~--~----~~~~~~~~~l~~i-p~driLlETD~P~~~p~~~~~~~~~~~~~~~~~ 172 (254)
..+...++++.|.++.+.- ... . .+.+.+.++++.- +.||+++-||.....|. |...
T Consensus 229 ~~~~~~~~~~~~~~G~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~G~~~d~v~l~tD~~~~~~~-------~~~~----- 296 (388)
T PRK10657 229 NEPLFEQALEFAKKGGVIDLTTSDPDFLGEGEVAPAEALKRALEAGVPLSRVTLSSDGNGSLPK-------FDED----- 296 (388)
T ss_pred CHHHHHHHHHHHHcCCeEEEecCCCcccccCccCHHHHHHHHHHcCCChhheEEECCCCCCCce-------eccC-----
Confidence 2256667888999996652 211 0 1224466777775 47999999997421110 0000
Q ss_pred ccccccccCCCCCCCCCccccccCCCCCCCCCCCCCCcccHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCCC
Q 025333 173 QELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEG 247 (254)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~neP~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~~ 247 (254)
|-+ ...+.....++...+.......+++++++.+.++.|..++|++.+
T Consensus 297 -----------------------g~~----~~~g~~~~~~l~~~~~~~~~~~gis~~~~l~~aT~npA~~lg~~~ 344 (388)
T PRK10657 297 -----------------------GNL----VGLGVGSVESLLEEVRELVKDEGLPLEDALKPLTSNVARFLKLNG 344 (388)
T ss_pred -----------------------CCE----eccCcCchhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCC
Confidence 000 000111123455555555556799999999999999999999864
No 27
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=97.87 E-value=0.0013 Score=62.46 Aligned_cols=171 Identities=13% Similarity=0.124 Sum_probs=105.1
Q ss_pred ChhHHHHHHHHhhc---CCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccch-------HHHHHH
Q 025333 15 TPNWFSTLKEFFEI---TPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRA-------FGDLLE 84 (254)
Q Consensus 15 ~~~~l~~l~~ll~~---~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a-------~~~~l~ 84 (254)
+++.+++|.+++++ ..+.++. +|+.|... .. .-...+.+.+++|+++|.|+.+|+++. ..++++
T Consensus 162 ~~~~~~~~~~l~~~al~~Ga~g~~-~~~~y~~~-~~----~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~e~~av~~~~~ 235 (415)
T cd01297 162 TEEELAKMRELLREALEAGALGIS-TGLAYAPR-LY----AGTAELVALARVAARYGGVYQTHVRYEGDSILEALDELLR 235 (415)
T ss_pred CHHHHHHHHHHHHHHHHCCCeEEE-cccccCCc-cc----CCHHHHHHHHHHHHHcCCEEEEEECcccccHHHHHHHHHH
Confidence 45678888888743 3455664 66766421 01 123556667789999999999999963 445556
Q ss_pred HHHhcCCCCCcE-EEEeCCCC----------HHHHHHHHHCCcEEeecccccccc-hHHHHHHHHhCCCCcEEEecCCCC
Q 025333 85 IMKSVGPFPDGV-IIHSYLGS----------AEMVPELSKLGAYFSFSGFLMSMK-AQKAKKMLKVVPSERILLETDAPD 152 (254)
Q Consensus 85 il~~~~~~~~~~-IiH~fsg~----------~e~~~~~l~~G~y~s~~~~~~~~~-~~~~~~~l~~ip~driLlETD~P~ 152 (254)
+.+..+ .++ |.|.-+.. .+.++++...|.-++....+.+.. ....+++++. ....+-||.+-
T Consensus 236 ~a~~~g---~r~~i~H~ss~~~~~~~~~~~~l~~i~~a~~~G~~v~~e~~p~~~~~~~~~~~l~~~---~~~~i~SDh~~ 309 (415)
T cd01297 236 LGRETG---RPVHISHLKSAGAPNWGKIDRLLALIEAARAEGLQVTADVYPYGAGSEDDVRRIMAH---PVVMGGSDGGA 309 (415)
T ss_pred HHHHhC---CCEEEEEEecCCCcccchHHHHHHHHHHHHHhCCcEEEEeCCCCCCcHHHHHHHHcC---CCceeeeCCCc
Confidence 666654 234 44866533 366666666665554433332222 3445566666 58899999642
Q ss_pred CCchhhhhcccccCCCCCCcccccccccCCCCCCCCCccccccCCCCCCCCCCCCCCcccHHHHHHHHHhcc-CCCHHHH
Q 025333 153 ALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLL-DMTKEEL 231 (254)
Q Consensus 153 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~neP~~l~~v~~~lA~i~-~~~~eev 231 (254)
.. .+. ...+..++.++.....-. .++.+++
T Consensus 310 ~~-~~~------------------------------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~ 340 (415)
T cd01297 310 LG-KPH------------------------------------------------PRSYGDFTRVLGHYVRERKLLSLEEA 340 (415)
T ss_pred CC-CCC------------------------------------------------cchhCCHHHHHHHHhcccCCCCHHHH
Confidence 21 110 001112555665444334 4999999
Q ss_pred HHHHHHHHHHhcCCC
Q 025333 232 AELSYRNAIRLFSYE 246 (254)
Q Consensus 232 ~~~~~~N~~~~f~~~ 246 (254)
.+.++.|..++|++.
T Consensus 341 ~~~~t~~pA~~~gl~ 355 (415)
T cd01297 341 VRKMTGLPARVFGLA 355 (415)
T ss_pred HHHHHHHHHHHhCCC
Confidence 999999999999996
No 28
>TIGR01178 ade adenine deaminase. The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected.
Probab=97.82 E-value=0.00063 Score=67.20 Aligned_cols=163 Identities=15% Similarity=0.171 Sum_probs=111.3
Q ss_pred HHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccchHHHHHHHHHhcCCCCCcEEE
Q 025333 19 FSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVII 98 (254)
Q Consensus 19 l~~l~~ll~~~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a~~~~l~il~~~~~~~~~~Ii 98 (254)
.+.++++++++.++++||. ++|... .....++++.. +.|+++|+++..||.....+-+..+...|. .+-
T Consensus 133 ~~~i~~~~~~~~V~glke~-m~~~~v-----~~~d~~~l~~i-~~a~~~g~~I~gHap~l~~~eL~~~~~aGi----~~d 201 (552)
T TIGR01178 133 AEDIDELMELDEVLGLAEV-MDYPGV-----INADIEMLNKI-NSARKRNKVIDGHCPGLSGKLLNKYISAGI----SND 201 (552)
T ss_pred HHHHHHHHcCCCccEEEEE-ecchhh-----cCCCHHHHHHH-HHHHhCCCEEEecCCCCCHHHHHHHHHcCC----CCC
Confidence 6778888888889999998 354211 01123444444 688999999999999876666666665553 234
Q ss_pred EeCCCCHHHHHHHHHCCcEEeecccccccchHHHHHHHHhCCCCcEEEecCC--CCCCchhhhhcccccCCCCCCccccc
Q 025333 99 HSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQKAKKMLKVVPSERILLETDA--PDALPKAELNSLFLVDGDPSLPQELS 176 (254)
Q Consensus 99 H~fsg~~e~~~~~l~~G~y~s~~~~~~~~~~~~~~~~l~~ip~driLlETD~--P~~~p~~~~~~~~~~~~~~~~~~~~~ 176 (254)
|+- .+.+++.+-+++|.|+.+-......+-..+..++..-...++.+-||. |+. +..
T Consensus 202 He~-~s~~ea~e~~~~Gm~~~ir~gs~~~n~~~~~~~~~~~~~~~~~l~TD~~~~~~---~~~----------------- 260 (552)
T TIGR01178 202 HES-TSIEEAREKLRLGMKLMIREGSAAKNLEALHPLINEKNCRSLMLCTDDRHVND---ILN----------------- 260 (552)
T ss_pred cCc-CCHHHHHHHHHCCCEEEEeCCccccCHHHHHHHHhhcCCceEEEEeCCCChhH---HHh-----------------
Confidence 754 467888888999999987654333333445555555466899999993 221 000
Q ss_pred ccccCCCCCCCCCccccccCCCCCCCCCCCCCCcccHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCCC
Q 025333 177 AKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEG 247 (254)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~neP~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~~ 247 (254)
.| .+...+..+.+ .|++++++.+..+.|..+.|++.+
T Consensus 261 ------------------~g---------------~l~~~v~~ai~-~g~~~~~Al~maT~npA~~lgl~~ 297 (552)
T TIGR01178 261 ------------------EG---------------HINHIVRRAIE-HGVDPFDALQMASINPAEHFGIDV 297 (552)
T ss_pred ------------------cC---------------CHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCCC
Confidence 01 35555555544 589999999999999999999964
No 29
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=97.72 E-value=0.0029 Score=57.96 Aligned_cols=132 Identities=17% Similarity=0.215 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHhcCCceEEeccch--HHHHHHHHHhcCCCCCcEEEEeCCC--CHHHHHHHHHCCcEEeecccccc-c-
Q 025333 54 VGVFRQQLELAKELKRPASIHCVRA--FGDLLEIMKSVGPFPDGVIIHSYLG--SAEMVPELSKLGAYFSFSGFLMS-M- 127 (254)
Q Consensus 54 ~~vf~~ql~lA~~~~lPvilH~~~a--~~~~l~il~~~~~~~~~~IiH~fsg--~~e~~~~~l~~G~y~s~~~~~~~-~- 127 (254)
.+.|.+.+++|+++|+|+.+|+... ..++...+.+.|. . .+.|+..- +.+.++.+.+.|+.+.+.+.... .
T Consensus 171 ~~~~~~~~~~A~~~g~~i~~Ha~E~~~~~~~~~~~~~~g~--~-ri~Hg~~l~~~~~~i~~l~~~gi~v~~cP~Sn~~l~ 247 (324)
T TIGR01430 171 PPDFVRAFAIARELGLHLTVHAGELGGPESVREALDDLGA--T-RIGHGVRALEDPELLKRLAQENITLEVCPTSNVALG 247 (324)
T ss_pred HHHHHHHHHHHHHCCCCeEEecCCCCChHHHHHHHHHcCc--h-hcchhhhhccCHHHHHHHHHcCceEEECCccccccc
Confidence 4668899999999999999999964 4566666766764 2 37798765 56788888889998887764211 0
Q ss_pred -----chHHHHHHHHhCCCCcEEEecCCCCCCchhhhhcccccCCCCCCcccccccccCCCCCCCCCccccccCCCCCCC
Q 025333 128 -----KAQKAKKMLKVVPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTL 202 (254)
Q Consensus 128 -----~~~~~~~~l~~ip~driLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 202 (254)
...-++++++.- =++-+.||.|....
T Consensus 248 ~~~~~~~~pi~~l~~~G--v~v~igTD~~~~~~----------------------------------------------- 278 (324)
T TIGR01430 248 VVKSLAEHPLRRFLEAG--VKVTLNSDDPAYFG----------------------------------------------- 278 (324)
T ss_pred ccCCcccChHHHHHHCC--CEEEECCCCCcccC-----------------------------------------------
Confidence 012255565542 37889999875310
Q ss_pred CCCCCCCcccHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCC
Q 025333 203 PKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSY 245 (254)
Q Consensus 203 ~~~~~neP~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~ 245 (254)
. ++.+-+..+.+..|++++++.+.+.+.+...|--
T Consensus 279 -------~-~l~~e~~~a~~~~~l~~~el~~~~~na~~~~f~~ 313 (324)
T TIGR01430 279 -------S-YLTEEYEIAAKHAGLTEEELKQLARNALEGSFLS 313 (324)
T ss_pred -------C-CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC
Confidence 1 4666677777878999999887777777766643
No 30
>TIGR02967 guan_deamin guanine deaminase. This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model.
Probab=97.61 E-value=0.0024 Score=59.99 Aligned_cols=95 Identities=22% Similarity=0.149 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHhc-CCceEEeccchHHHH-------------HHHHHhcCCCCCcE-EEEeCCCCHHHHHHHHHCCcEEe
Q 025333 55 GVFRQQLELAKEL-KRPASIHCVRAFGDL-------------LEIMKSVGPFPDGV-IIHSYLGSAEMVPELSKLGAYFS 119 (254)
Q Consensus 55 ~vf~~ql~lA~~~-~lPvilH~~~a~~~~-------------l~il~~~~~~~~~~-IiH~fsg~~e~~~~~l~~G~y~s 119 (254)
+.+++.+++|+++ |+||.+|+-....++ ++.+.+.|....+. +.||+.-+.+.++.+.+.|.+++
T Consensus 186 e~l~~~~~~A~~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~~~l~~~g~lg~~~~~~H~~~~~~~~~~~l~~~g~~v~ 265 (401)
T TIGR02967 186 EQLAAAGELAKEYPDVYVQTHLSENKDEIAWVKELFPEAKDYLDVYDHYGLLGRRSVFAHCIHLSDEECQRLAETGAAIA 265 (401)
T ss_pred HHHHHHHHHHHhCCCCeeEEEECCCchHHHHHHHHcCCCCcHHHHHHHCCCCCCCeEEEecccCCHHHHHHHHHcCCeEE
Confidence 6788999999999 999999997543322 34455555333344 46999888899999999999988
Q ss_pred ecccccc---cchHHHHHHHHhCCCCcEEEecCCC
Q 025333 120 FSGFLMS---MKAQKAKKMLKVVPSERILLETDAP 151 (254)
Q Consensus 120 ~~~~~~~---~~~~~~~~~l~~ip~driLlETD~P 151 (254)
+.+.... .....++++++. +. ++.+.||++
T Consensus 266 ~~P~~~~~~~~g~~~~~~~~~~-Gv-~v~lGtD~~ 298 (401)
T TIGR02967 266 HCPTSNLFLGSGLFNLKKALEH-GV-RVGLGTDVG 298 (401)
T ss_pred EChHHHHHhccCCCCHHHHHHC-CC-eEEEecCCC
Confidence 7753110 001124445444 43 899999985
No 31
>cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=97.61 E-value=0.0027 Score=59.80 Aligned_cols=100 Identities=17% Similarity=0.200 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHhcCCceEEeccchHHHH-----------------------------HHHHHhcCCCCC-cEEEEe
Q 025333 51 MDQVGVFRQQLELAKELKRPASIHCVRAFGDL-----------------------------LEIMKSVGPFPD-GVIIHS 100 (254)
Q Consensus 51 ~~Q~~vf~~ql~lA~~~~lPvilH~~~a~~~~-----------------------------l~il~~~~~~~~-~~IiH~ 100 (254)
..+.+.|++..++|+++++|+.+|+.....+. ++.+.+.+.... ..+.||
T Consensus 159 ~~s~e~l~~~~~lA~~~g~~i~~Hl~E~~~e~~~~~~~~g~~~~~~~~~~~~~~~~~g~~pv~~l~~~g~L~~~~~~~H~ 238 (381)
T cd01312 159 SVHPELAQDLIDLAKKLNLPLSTHFLESKEEREWLEESKGWFKHFWESFLKLPKPKKLATAIDFLDMLGGLGTRVSFVHC 238 (381)
T ss_pred ccCHHHHHHHHHHHHHcCCeEEEEecCcHHHHHHHHHhccchhhHhhhhcccccccCCCCHHHHHHHcCCCCCCcEEEEC
Confidence 45678999999999999999999998654332 345555554333 346699
Q ss_pred CCCCHHHHHHHHHCCcEEeecccccc-c--chHHHHHHHHhCCCCcEEEecCCCC
Q 025333 101 YLGSAEMVPELSKLGAYFSFSGFLMS-M--KAQKAKKMLKVVPSERILLETDAPD 152 (254)
Q Consensus 101 fsg~~e~~~~~l~~G~y~s~~~~~~~-~--~~~~~~~~l~~ip~driLlETD~P~ 152 (254)
..-+.+.++.+.+.|+.++..+.... . ....++++++.- -++-+.||++-
T Consensus 239 ~~l~~~~~~~l~~~g~~v~~~P~sn~~lg~g~~p~~~~~~~G--v~v~lGtD~~~ 291 (381)
T cd01312 239 VYANLEEAEILASRGASIALCPRSNRLLNGGKLDVSELKKAG--IPVSLGTDGLS 291 (381)
T ss_pred CcCCHHHHHHHHHcCCeEEECcchhhhhcCCCcCHHHHHHCC--CcEEEeCCCCc
Confidence 98889999999999999988874210 0 011245555543 58899999863
No 32
>cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases. Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric.
Probab=97.58 E-value=0.002 Score=59.71 Aligned_cols=123 Identities=15% Similarity=0.111 Sum_probs=76.5
Q ss_pred HHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccch-------HHHHHHHHHhcCC
Q 025333 19 FSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRA-------FGDLLEIMKSVGP 91 (254)
Q Consensus 19 l~~l~~ll~~~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a-------~~~~l~il~~~~~ 91 (254)
.+.++++++.+. ..+| |+++... .....+.|++.++.|+++|+|+.+|+... .+.+++.+.+.+.
T Consensus 161 ~~~v~~~~~~g~-~~~~--~~~~~~~-----~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~g~ 232 (398)
T cd01293 161 EELMREALKMGA-DVVG--GIPPAEI-----DEDGEESLDTLFELAQEHGLDIDLHLDETDDPGSRTLEELAEEAERRGM 232 (398)
T ss_pred HHHHHHHHHhCC-CEEe--CCCCCcC-----CccHHHHHHHHHHHHHHhCCCCEEEeCCCCCcchhHHHHHHHHHHHhCC
Confidence 344555554332 2343 5665421 12346889999999999999999999753 3345666777664
Q ss_pred CCCcEEEEeCCCC-------HHHHHHHHHCCcEEeecccccc-c-----------chHHHHHHHHhCCCCcEEEecCCC
Q 025333 92 FPDGVIIHSYLGS-------AEMVPELSKLGAYFSFSGFLMS-M-----------KAQKAKKMLKVVPSERILLETDAP 151 (254)
Q Consensus 92 ~~~~~IiH~fsg~-------~e~~~~~l~~G~y~s~~~~~~~-~-----------~~~~~~~~l~~ip~driLlETD~P 151 (254)
.+...+.|+..-+ .+.++.+.+.|.++..++.... . ....++++++.- =++.+.||++
T Consensus 233 ~~~~~i~H~~~~~~~~~~~~~~~~~~l~~~g~~v~~~p~s~~~l~~~~~~~~~~~~~~~~~~~~~~G--v~v~lGTD~~ 309 (398)
T cd01293 233 QGRVTCSHATALGSLPEAEVSRLADLLAEAGISVVSLPPINLYLQGREDTTPKRRGVTPVKELRAAG--VNVALGSDNV 309 (398)
T ss_pred CCCEEeeecchhhcCCHHHHHHHHHHHHHcCCeEEeCCCcchhhcccccCCCCCCCCCcHHHHHHCC--CeEEECCCCC
Confidence 3333456987543 1447788889999988764321 0 112345555543 4899999984
No 33
>PRK09228 guanine deaminase; Provisional
Probab=97.56 E-value=0.0035 Score=59.95 Aligned_cols=96 Identities=17% Similarity=0.117 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHhc-CCceEEeccchHHHH-------------HHHHHhcCCCCCcE-EEEeCCCCHHHHHHHHHCCcEE
Q 025333 54 VGVFRQQLELAKEL-KRPASIHCVRAFGDL-------------LEIMKSVGPFPDGV-IIHSYLGSAEMVPELSKLGAYF 118 (254)
Q Consensus 54 ~~vf~~ql~lA~~~-~lPvilH~~~a~~~~-------------l~il~~~~~~~~~~-IiH~fsg~~e~~~~~l~~G~y~ 118 (254)
.+.+++..++|+++ ++|+.+|+-....+. ++.+.+.|....+. +.||...+.+.++.+.+.|..+
T Consensus 210 ~~~l~~~~~lA~~~~~~~i~~Hl~E~~~e~~~~~~~~g~~~~~~~~l~~~G~l~~~~~~~H~~~l~~~~~~~la~~g~~v 289 (433)
T PRK09228 210 PEQLEAAGALAREHPDVWIQTHLSENLDEIAWVKELFPEARDYLDVYERYGLLGPRAVFAHCIHLEDRERRRLAETGAAI 289 (433)
T ss_pred HHHHHHHHHHHHHCCCCceEEeecCChhHHHHHHHHcCCCCCHHHHHHHcCCCCCCeEEEeccCCCHHHHHHHHHcCCeE
Confidence 36899999999998 999999999754443 33455555333344 4599999999999999999999
Q ss_pred eecccccc-c--chHHHHHHHHhCCCCcEEEecCCC
Q 025333 119 SFSGFLMS-M--KAQKAKKMLKVVPSERILLETDAP 151 (254)
Q Consensus 119 s~~~~~~~-~--~~~~~~~~l~~ip~driLlETD~P 151 (254)
++.+.... . ....++++++. + -++.+.||++
T Consensus 290 ~~~P~sn~~lg~g~~~~~~~~~~-G-v~v~lGtD~~ 323 (433)
T PRK09228 290 AFCPTSNLFLGSGLFDLKRADAA-G-VRVGLGTDVG 323 (433)
T ss_pred EECCccHHhhcCCCcCHHHHHHC-C-CeEEEecCCC
Confidence 88764210 0 01123445444 3 5888999985
No 34
>PRK07213 chlorohydrolase; Provisional
Probab=97.53 E-value=0.0039 Score=58.36 Aligned_cols=136 Identities=17% Similarity=0.170 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHhcCCceEEeccchHHHH-----------HHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCcEEeecc
Q 025333 54 VGVFRQQLELAKELKRPASIHCVRAFGDL-----------LEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSG 122 (254)
Q Consensus 54 ~~vf~~ql~lA~~~~lPvilH~~~a~~~~-----------l~il~~~~~~~~~~IiH~fsg~~e~~~~~l~~G~y~s~~~ 122 (254)
.+.+++.+++|+++|+||.+|+-....+. ++.+.+.|.. .+.+.|++.-+.+.++.+.+.|+.+.+.+
T Consensus 178 ~~~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~~~G~~~v~~~~~~G~~-~~~i~H~~~~~~~~i~~la~~g~~v~~~P 256 (375)
T PRK07213 178 DEELKFICKECKREKKIFSIHAAEHKGSVEYSLEKYGMTEIERLINLGFK-PDFIVHATHPSNDDLELLKENNIPVVVCP 256 (375)
T ss_pred HHHHHHHHHHHHHcCCEEEEeeCCchhHHHHHHHHcCCChHHHHHhcCCC-CCEEEECCCCCHHHHHHHHHcCCcEEECC
Confidence 35788999999999999999996543321 3445556643 33678999889999999999998887766
Q ss_pred cccc-c--chHHHHHHHHhCCCCcEEEecCCCCCCchhhhhcccccCCCCCCcccccccccCCCCCCCCCccccccCCCC
Q 025333 123 FLMS-M--KAQKAKKMLKVVPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDS 199 (254)
Q Consensus 123 ~~~~-~--~~~~~~~~l~~ip~driLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 199 (254)
.... . ....++++++.- =++.+.||++-.
T Consensus 257 ~sn~~l~~g~~~v~~l~~~G--v~v~lGTD~~~~---------------------------------------------- 288 (375)
T PRK07213 257 RANASFNVGLPPLNEMLEKG--ILLGIGTDNFMA---------------------------------------------- 288 (375)
T ss_pred cchhhhccCCccHHHHHHCC--CEEEEeeCCCCC----------------------------------------------
Confidence 4211 0 012245555542 389999998421
Q ss_pred CCCCCCCCCCcccHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCCC
Q 025333 200 STLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEG 247 (254)
Q Consensus 200 ~~~~~~~~neP~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~~ 247 (254)
|.+ ++.+.+..++...+++++++.+..+.|..+++++.+
T Consensus 289 --------~~~-~~~~e~~~~~~~~~~~~~~~l~~aT~~gA~~lg~~~ 327 (375)
T PRK07213 289 --------NSP-SIFREMEFIYKLYHIEPKEILKMATINGAKILGLIN 327 (375)
T ss_pred --------chH-hHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHhCCCC
Confidence 111 233445555555689999999999999999999853
No 35
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=97.50 E-value=0.0069 Score=55.37 Aligned_cols=65 Identities=15% Similarity=0.151 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhcCCceEEeccchHHHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCcEEeeccc
Q 025333 54 VGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGF 123 (254)
Q Consensus 54 ~~vf~~ql~lA~~~~lPvilH~~~a~~~~l~il~~~~~~~~~~IiH~fsg~~e~~~~~l~~G~y~s~~~~ 123 (254)
.+.|++.++.|+++|+||.+|+.... .+...+ +.+. ..|.|++.-+.+.++.+.+.|++++.+..
T Consensus 159 ~e~l~~~~~~A~~~g~~v~~H~~~~~-~i~~~l-~~G~---~~i~H~~~~~~~~~~~l~~~g~~~~~t~~ 223 (342)
T cd01299 159 EEELRAIVDEAHKAGLYVAAHAYGAE-AIRRAI-RAGV---DTIEHGFLIDDETIELMKEKGIFLVPTLA 223 (342)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHHH-HcCC---CEEeecCCCCHHHHHHHHHCCcEEeCcHH
Confidence 46788999999999999999998642 222333 3443 35789998889999999999999876653
No 36
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=97.48 E-value=0.0038 Score=57.41 Aligned_cols=133 Identities=16% Similarity=0.231 Sum_probs=96.3
Q ss_pred HHHHHHHHhcCCceEE-eccc-hHHHHHHHHHhcCCCCCcEEE-EeC---------CCCHHHHHHHHHCCcEEeeccccc
Q 025333 58 RQQLELAKELKRPASI-HCVR-AFGDLLEIMKSVGPFPDGVII-HSY---------LGSAEMVPELSKLGAYFSFSGFLM 125 (254)
Q Consensus 58 ~~ql~lA~~~~lPvil-H~~~-a~~~~l~il~~~~~~~~~~Ii-H~f---------sg~~e~~~~~l~~G~y~s~~~~~~ 125 (254)
++.++.+.+++.+|=+ |+-. ...|++++ .. ..+|+ |+. +-+-++++.+.+.|-.++++....
T Consensus 152 k~lV~~~N~LgIiiDlSH~s~kt~~Dvl~~---s~---~PviaSHSN~~al~~h~RNl~D~qlkaI~~~gGvIgv~~~~~ 225 (313)
T COG2355 152 KELVREMNELGIIIDLSHLSDKTFWDVLDL---SK---APVVASHSNARALVDHPRNLSDEQLKAIAETGGVIGVNFIPA 225 (313)
T ss_pred HHHHHHHHhcCCEEEecccCCccHHHHHhc---cC---CceEEecCCchhccCCCCCCCHHHHHHHHhcCCEEEEEeehh
Confidence 4567888999988865 7764 45566654 21 22444 543 556788999999999999997765
Q ss_pred ccch---H---------HHHHHHHhCCCCcEEEecCCCCCCchhhhhcccccCCCCCCcccccccccCCCCCCCCCcccc
Q 025333 126 SMKA---Q---------KAKKMLKVVPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQF 193 (254)
Q Consensus 126 ~~~~---~---------~~~~~l~~ip~driLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (254)
+.+. . .+.-+++.++.|.+-|.||+-+....|.
T Consensus 226 fl~~~~~~~atldd~v~hI~h~v~~~G~dhVglGsDf~g~~~~p~----------------------------------- 270 (313)
T COG2355 226 FLRPGGAARATLDDLVRHIDHFVELVGIDHVGLGSDFDGGTGPPD----------------------------------- 270 (313)
T ss_pred hccCCCCCCCCHHHHHHHHHHHHHhcCcceeEecccccCCCCCch-----------------------------------
Confidence 5551 1 1334666789999999999987653221
Q ss_pred ccCCCCCCCCCCCCCCcccHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcC
Q 025333 194 HASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFS 244 (254)
Q Consensus 194 ~~g~~~~~~~~~~~neP~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~ 244 (254)
+.-.+..++.+.+.+.+ +|.+.++++.+.+.|+.|+|.
T Consensus 271 ------------gled~~~l~~l~~~L~~-~G~~e~~i~~i~~~N~lRV~~ 308 (313)
T COG2355 271 ------------GLEDVGKLPNLTAALIE-RGYSEEEIEKIAGENWLRVLK 308 (313)
T ss_pred ------------hhcChhHHHHHHHHHHH-cCCCHHHHHHHHHHhHHHHHH
Confidence 33456778999998855 689999999999999999984
No 37
>cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid. Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides.
Probab=97.44 E-value=0.011 Score=55.11 Aligned_cols=175 Identities=16% Similarity=0.194 Sum_probs=92.1
Q ss_pred eEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHH-hcCCc--eEEecc---chHHHHHHHHHhcCCCCCcEEEEeCCCCH
Q 025333 32 AAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAK-ELKRP--ASIHCV---RAFGDLLEIMKSVGPFPDGVIIHSYLGSA 105 (254)
Q Consensus 32 ~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~-~~~lP--vilH~~---~a~~~~l~il~~~~~~~~~~IiH~fsg~~ 105 (254)
.++|+++...+... ........++. +..+.+. ..+.| +.+|+. .+.+.+.+++++.|.....++.|+..-+.
T Consensus 151 ~~~g~~~~~~~~~~-~~~~~~~~~~~-~~a~~~~~~~~~~~~~~vh~~~~~~~~~~i~~~~~~~G~~~~~~~~~~~~~~~ 228 (387)
T cd01308 151 IGVGEIAISDHRSS-QPTVEELARIA-AEARVGGLLGGKAGIVHIHLGDGKRALSPIFELIEETEIPITQFLPTHINRTA 228 (387)
T ss_pred cCcceEEEcCCCCC-CCCHHHHHHHH-HHHHHHHHhcCCCcEEEEEeCCchHHHHHHHHHHHhcCCCcceeECCcccCCH
Confidence 35777875544321 12222222222 2222322 23444 666677 56677778888866432233333333344
Q ss_pred HH---HHHHHHCCcEEeecccccc--------cchHHHHHHHHh-CCCCcEEEecCCCCCCchhhhhcccccCCCCCCcc
Q 025333 106 EM---VPELSKLGAYFSFSGFLMS--------MKAQKAKKMLKV-VPSERILLETDAPDALPKAELNSLFLVDGDPSLPQ 173 (254)
Q Consensus 106 e~---~~~~l~~G~y~s~~~~~~~--------~~~~~~~~~l~~-ip~driLlETD~P~~~p~~~~~~~~~~~~~~~~~~ 173 (254)
+. ..+.++.|.|+++....+. .+...++.+++. ++.|+|++-||+.-..|. |...
T Consensus 229 ~~~~~~~~~~~~G~~v~i~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~d~i~l~TD~~~~~p~-------~~~~------ 295 (387)
T cd01308 229 PLFEQGVEFAKMGGTIDLTSSIDPQFRKEGEVRPSEALKRLLEQGVPLERITFSSDGNGSLPK-------FDEN------ 295 (387)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCccccccCccChHHHHHHHHHhCCCCCcEEEEECCCCCccc-------CccC------
Confidence 43 4466778998888743211 123445677777 467999999997211110 0000
Q ss_pred cccccccCCCCCCCCCccccccCCCCCCCCCCCCCCcccHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCCC
Q 025333 174 ELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEG 247 (254)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~neP~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~~ 247 (254)
|.+. .......- .+...+..+.+..+++++++.+.+..|..++|++++
T Consensus 296 ----------------------g~~~---~~g~~~~~-~~~~~~~~~v~~~~i~~~~al~~~T~npA~~lg~~~ 343 (387)
T cd01308 296 ----------------------GNLV---GLGVGSVD-TLLREVREAVKCGDIPLEVALRVITSNVARILKLRK 343 (387)
T ss_pred ----------------------CeEE---ecCcCcHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhCCCC
Confidence 0000 00011111 222333334345579999999999999999999863
No 38
>PRK09045 N-ethylammeline chlorohydrolase; Provisional
Probab=97.41 E-value=0.006 Score=58.30 Aligned_cols=97 Identities=15% Similarity=0.136 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhcCCceEEeccchHHHHHHHH-----------HhcCCCCCc-EEEEeCCCCHHHHHHHHHCCcEEeec
Q 025333 54 VGVFRQQLELAKELKRPASIHCVRAFGDLLEIM-----------KSVGPFPDG-VIIHSYLGSAEMVPELSKLGAYFSFS 121 (254)
Q Consensus 54 ~~vf~~ql~lA~~~~lPvilH~~~a~~~~l~il-----------~~~~~~~~~-~IiH~fsg~~e~~~~~l~~G~y~s~~ 121 (254)
.+.+++.+++|.++|+||.+|+.....++...+ .+.+....+ .+.||..-+.+.++.+.+.|+.++..
T Consensus 201 ~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~l~~~g~l~~r~~~~H~~~l~~~~~~~la~~g~~i~~~ 280 (443)
T PRK09045 201 DENLERIRTLAEQLDLPIHIHLHETAQEIADSLKQHGQRPLARLARLGLLGPRLIAVHMTQLTDAEIALLAETGCSVVHC 280 (443)
T ss_pred HHHHHHHHHHHHHcCCCEEEeecCcHHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEecCCCHHHHHHHHHcCCeEEEC
Confidence 368899999999999999999975444433333 333322223 35599988888999999999999876
Q ss_pred cccccc---chHHHHHHHHhCCCCcEEEecCCCC
Q 025333 122 GFLMSM---KAQKAKKMLKVVPSERILLETDAPD 152 (254)
Q Consensus 122 ~~~~~~---~~~~~~~~l~~ip~driLlETD~P~ 152 (254)
+..... ....++++++.- =++.+.||+|.
T Consensus 281 P~~~~~~~~~~~~~~~l~~~G--v~v~lGtD~~~ 312 (443)
T PRK09045 281 PESNLKLASGFCPVAKLLQAG--VNVALGTDGAA 312 (443)
T ss_pred HHHHhhhccCCCcHHHHHHCC--CeEEEecCCCC
Confidence 531100 011244555432 47899999874
No 39
>cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=97.38 E-value=0.003 Score=58.89 Aligned_cols=119 Identities=23% Similarity=0.202 Sum_probs=77.4
Q ss_pred CceEEeccchH--HHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCcEEeecccccccch--------HHHHHHHHh
Q 025333 69 RPASIHCVRAF--GDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKA--------QKAKKMLKV 138 (254)
Q Consensus 69 lPvilH~~~a~--~~~l~il~~~~~~~~~~IiH~fsg~~e~~~~~l~~G~y~s~~~~~~~~~~--------~~~~~~l~~ 138 (254)
+||.+||-.+. ..++++.++++. .-.+.|++.. .+.++.+.+.|+++.+++....... ....++.+.
T Consensus 193 ~~v~vHa~~~~~i~~~l~~~~e~g~--~~~i~H~~~~-~~~~~~la~~gv~v~~~P~~~~~~~~~~~~~~~~~~~~l~~a 269 (359)
T cd01309 193 IPVRIHAHRADDILTAIRIAKEFGI--KITIEHGAEG-YKLADELAKHGIPVIYGPTLTLPKKVEEVNDAIDTNAYLLKK 269 (359)
T ss_pred eeEEEEeCCHHHHHHHHHHHHHcCC--CEEEECchhH-HHHHHHHHHcCCCEEECccccccccHHHhhcchhhHHHHHHc
Confidence 89999998753 345677777764 2245688765 7788888889999988765322211 111222222
Q ss_pred CCCCcEEEecCCCCCCchhhhhcccccCCCCCCcccccccccCCCCCCCCCccccccCCCCCCCCCCCCCCcccHHHHHH
Q 025333 139 VPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLD 218 (254)
Q Consensus 139 ip~driLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~neP~~l~~v~~ 218 (254)
+-=++.+.||+|+.... .+..-+.
T Consensus 270 -GGv~valgsD~~~~~~~-------------------------------------------------------~l~~~~~ 293 (359)
T cd01309 270 -GGVAFAISSDHPVLNIR-------------------------------------------------------NLNLEAA 293 (359)
T ss_pred -CCceEEEECCCCCccch-------------------------------------------------------hHHHHHH
Confidence 21369999999874211 1222222
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHhcCCCC
Q 025333 219 YVASLLDMTKEELAELSYRNAIRLFSYEG 247 (254)
Q Consensus 219 ~lA~i~~~~~eev~~~~~~N~~~~f~~~~ 247 (254)
++...+++.+++.+.++.|..+++++++
T Consensus 294 -~a~~~gl~~~~al~~~T~n~A~~lg~~~ 321 (359)
T cd01309 294 -KAVKYGLSYEEALKAITINPAKILGIED 321 (359)
T ss_pred -HHHHcCCCHHHHHHHHHHHHHHHhCCCC
Confidence 2334689999999999999999999875
No 40
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=97.36 E-value=0.013 Score=53.55 Aligned_cols=128 Identities=18% Similarity=0.262 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHhcCCceEEeccc--hHHHHHHHHHhcCCCCCcEEEEeCCC--CHHHHHHHHHCCcEEeecccccc-cc
Q 025333 54 VGVFRQQLELAKELKRPASIHCVR--AFGDLLEIMKSVGPFPDGVIIHSYLG--SAEMVPELSKLGAYFSFSGFLMS-MK 128 (254)
Q Consensus 54 ~~vf~~ql~lA~~~~lPvilH~~~--a~~~~l~il~~~~~~~~~~IiH~fsg--~~e~~~~~l~~G~y~s~~~~~~~-~~ 128 (254)
.+.|...+++|+++|+||.+|+.. ..+.+.+.++..+. . .+.|++.- +.+.++.+.+.|+.+++.+.... ..
T Consensus 172 ~~~~~~~~~~A~~~g~~v~~H~~E~~~~~~~~~a~~~~g~--~-~i~H~~~l~~~~~~~~~l~~~gi~v~~~P~sn~~l~ 248 (325)
T cd01320 172 PEKFVRAFQRAREAGLRLTAHAGEAGGPESVRDALDLLGA--E-RIGHGIRAIEDPELVKRLAERNIPLEVCPTSNVQTG 248 (325)
T ss_pred HHHHHHHHHHHHHCCCceEEeCCCCCCHHHHHHHHHHcCC--c-ccchhhccCccHHHHHHHHHcCCeEEECCCcccccc
Confidence 356889999999999999999974 34566677776764 2 36798765 46678888899999988764211 00
Q ss_pred ------hHHHHHHHHhCCCCcEEEecCCCCCCchhhhhcccccCCCCCCcccccccccCCCCCCCCCccccccCCCCCCC
Q 025333 129 ------AQKAKKMLKVVPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTL 202 (254)
Q Consensus 129 ------~~~~~~~l~~ip~driLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 202 (254)
..-++++++.- =++.+.||.|-..
T Consensus 249 ~~~~~~~~p~~~l~~~G--v~v~lgTD~~~~~------------------------------------------------ 278 (325)
T cd01320 249 AVKSLAEHPLRELLDAG--VKVTINTDDPTVF------------------------------------------------ 278 (325)
T ss_pred ccCCcccChHHHHHHCC--CEEEECCCCCccc------------------------------------------------
Confidence 12245555542 3788999986321
Q ss_pred CCCCCCCcccHHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 025333 203 PKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRL 242 (254)
Q Consensus 203 ~~~~~neP~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~ 242 (254)
..++...+..++...|++++|+.+.+ .|+.+.
T Consensus 279 -------~~~~~~e~~~~~~~~~l~~~el~~~~-~na~~~ 310 (325)
T cd01320 279 -------GTYLTDEYELLAEAFGLTEEELKKLA-RNAVEA 310 (325)
T ss_pred -------CCCHHHHHHHHHHHcCCCHHHHHHHH-HHHHHH
Confidence 02455667777777899999988866 666554
No 41
>COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=97.32 E-value=0.0099 Score=53.72 Aligned_cols=134 Identities=14% Similarity=0.191 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHhcCCceEEeccc-hHHHHHHHHHhcCCCCCcEEE-EeCCCC---------HHHHHHHHH-CCcEEeecc
Q 025333 55 GVFRQQLELAKELKRPASIHCVR-AFGDLLEIMKSVGPFPDGVII-HSYLGS---------AEMVPELSK-LGAYFSFSG 122 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~-a~~~~l~il~~~~~~~~~~Ii-H~fsg~---------~e~~~~~l~-~G~y~s~~~ 122 (254)
..|++-++...++|+++-++.-. ...+.+..+.+... .++|+ ||-.-. .+-+..+.+ -|+|+=+||
T Consensus 124 ~~~r~~~~rL~~~gl~fdl~~~~~ql~~~i~l~~~~Pd--~~~VldH~G~p~~~~~~~~~w~~~m~~la~~pNv~~KlSG 201 (279)
T COG3618 124 PAWRANVERLAKLGLHFDLQVDPHQLPDLIPLALKAPD--VNFVLDHCGRPDIKINLEDPWKAALARLARRPNVWAKLSG 201 (279)
T ss_pred HHHHHHHHHHHhcCCeEEEEeChhhhHHHHHHHhhCCC--CCEEeccCCCCCccccccCHHHHHHHHHHhCCCeEEEEee
Confidence 78899999999999998887764 24455556655532 45777 754210 122223333 489999999
Q ss_pred cccccc----h----HHHHHHHHhCCCCcEEEecCCCCCCchhhhhcccccCCCCCCcccccccccCCCCCCCCCccccc
Q 025333 123 FLMSMK----A----QKAKKMLKVVPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFH 194 (254)
Q Consensus 123 ~~~~~~----~----~~~~~~l~~ip~driLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (254)
...+-. . .-.+.+++..|.||++..||.|-+.-.
T Consensus 202 ~~~~~~~~w~~~~v~p~~e~~i~~fg~dR~vfGSdwPv~~l~-------------------------------------- 243 (279)
T COG3618 202 VYAYSDESWTVEDVRPYVEELIELFGWDRFVFGSDWPVTSLE-------------------------------------- 243 (279)
T ss_pred ecccccCCCCHHHHHHHHHHHHHhcCccceEecCCCCccccc--------------------------------------
Confidence 654321 1 124567888999999999999986321
Q ss_pred cCCCCCCCCCCCCCCcccHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHhcCC
Q 025333 195 ASKDSSTLPKETLNHPANIHNVLDYVASL-LDMTKEELAELSYRNAIRLFSY 245 (254)
Q Consensus 195 ~g~~~~~~~~~~~neP~~l~~v~~~lA~i-~~~~~eev~~~~~~N~~~~f~~ 245 (254)
. +....+....++ -+ +.+|-.++...|++|+|++
T Consensus 244 ------------~----~~~~~~~~~~~~v~~-~~~er~~i~~~NA~rly~~ 278 (279)
T COG3618 244 ------------S----DFASWVAATRELVPG-DAAERARILVDNARRLYRL 278 (279)
T ss_pred ------------C----ChHHHHHHHHHHcCC-CHHHHHHHHhhCHHHHhCC
Confidence 1 222333333333 33 8999999999999999986
No 42
>PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed
Probab=97.29 E-value=0.027 Score=53.96 Aligned_cols=97 Identities=11% Similarity=0.139 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHhcCCceEEeccchHHHHH-----------HHHHhcCCCCCc-EEEEeCCCCHHHHHHHHHCCcEEeec
Q 025333 54 VGVFRQQLELAKELKRPASIHCVRAFGDLL-----------EIMKSVGPFPDG-VIIHSYLGSAEMVPELSKLGAYFSFS 121 (254)
Q Consensus 54 ~~vf~~ql~lA~~~~lPvilH~~~a~~~~l-----------~il~~~~~~~~~-~IiH~fsg~~e~~~~~l~~G~y~s~~ 121 (254)
.+.|++.+++|.++|+|+.+|+-....+.. +.+.+.+....+ .+.||..-+.+.++.+.+.|+.+++.
T Consensus 213 ~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~l~~~g~l~~~~~~~H~~~l~~~~~~~la~~g~~v~~~ 292 (451)
T PRK08203 213 RELMRESAALARRLGVRLHTHLAETLDEEAFCLERFGMRPVDYLEDLGWLGPDVWLAHCVHLDDAEIARLARTGTGVAHC 292 (451)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEEeCCCHHHHHHHHhcCCeEEEC
Confidence 367888999999999999999976544332 333444432233 46699999999999999999998876
Q ss_pred ccccc-c--chHHHHHHHHhCCCCcEEEecCCCC
Q 025333 122 GFLMS-M--KAQKAKKMLKVVPSERILLETDAPD 152 (254)
Q Consensus 122 ~~~~~-~--~~~~~~~~l~~ip~driLlETD~P~ 152 (254)
+.... . ....++++++. + =++.+.||+|.
T Consensus 293 P~~~~~l~~~~~~~~~~~~~-G-v~v~lGtD~~~ 324 (451)
T PRK08203 293 PCSNMRLASGIAPVRELRAA-G-VPVGLGVDGSA 324 (451)
T ss_pred cHHhhhhccCCCCHHHHHHC-C-CeEEEecCCCc
Confidence 53110 0 01113445444 2 37999999874
No 43
>PRK06687 chlorohydrolase; Validated
Probab=97.27 E-value=0.013 Score=55.55 Aligned_cols=95 Identities=17% Similarity=0.209 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHhcCCceEEeccchHHHH-----------HHHHHhcCCCCCc-EEEEeCCCCHHHHHHHHHCCcEEeecc
Q 025333 55 GVFRQQLELAKELKRPASIHCVRAFGDL-----------LEIMKSVGPFPDG-VIIHSYLGSAEMVPELSKLGAYFSFSG 122 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~a~~~~-----------l~il~~~~~~~~~-~IiH~fsg~~e~~~~~l~~G~y~s~~~ 122 (254)
+.+++.+++|+++|+|+.+|+-....+. ++.+.+.+....+ .+.||..-+.+.++.+.+.|+.++..+
T Consensus 196 e~l~~~~~~A~~~g~~i~~H~~e~~~e~~~~~~~~g~~~~~~l~~~g~l~~~~~~~H~~~~~~~~~~~la~~g~~v~~~P 275 (419)
T PRK06687 196 DLLEASLEMAKELNIPLHVHVAETKEESGIILKRYGKRPLAFLEELGYLDHPSVFAHGVELNEREIERLASSQVAIAHNP 275 (419)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHHCcCHHHHHHHcCCCCCCeEEEEEecCCHHHHHHHHHcCCeEEECc
Confidence 5689999999999999999998754332 2334555533233 355998888999999999999998865
Q ss_pred cccc-c--chHHHHHHHHhCCCCcEEEecCCC
Q 025333 123 FLMS-M--KAQKAKKMLKVVPSERILLETDAP 151 (254)
Q Consensus 123 ~~~~-~--~~~~~~~~l~~ip~driLlETD~P 151 (254)
.... . ....++++++.- =++-+.||++
T Consensus 276 ~sn~~l~~g~~p~~~~~~~G--v~v~lGtD~~ 305 (419)
T PRK06687 276 ISNLKLASGIAPIIQLQKAG--VAVGIATDSV 305 (419)
T ss_pred HHhhhhccCCCcHHHHHHCC--CeEEEeCCCC
Confidence 3110 0 001234554442 3789999984
No 44
>PRK08204 hypothetical protein; Provisional
Probab=97.25 E-value=0.007 Score=57.73 Aligned_cols=96 Identities=24% Similarity=0.200 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHhcCCceEEeccc----hHHHHHHHHHhcCCCCCc-EEEEeCCCCHHHHHHHHHCCcEEeecccccc-c-
Q 025333 55 GVFRQQLELAKELKRPASIHCVR----AFGDLLEIMKSVGPFPDG-VIIHSYLGSAEMVPELSKLGAYFSFSGFLMS-M- 127 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~----a~~~~l~il~~~~~~~~~-~IiH~fsg~~e~~~~~l~~G~y~s~~~~~~~-~- 127 (254)
+.+++.+++|.++|+||.+|+-. ...+.++.+.+.+....+ .+.||...+.+.++.+.+.|.++++.+.... .
T Consensus 201 e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~l~~~g~~~~~~~i~H~~~~~~~~~~~la~~g~~v~~~P~~~~~~g 280 (449)
T PRK08204 201 EVARADFRLARELGLPISMHQGFGPWGATPRGVEQLHDAGLLGPDLNLVHGNDLSDDELKLLADSGGSFSVTPEIEMMMG 280 (449)
T ss_pred HHHHHHHHHHHHcCCcEEEEEcCCCcccCCCHHHHHHHCCCCCCCeEEEecCCCCHHHHHHHHHcCCCEEEChHHHhhhc
Confidence 56778889999999999999942 123456677776643333 4669999999999999999999998763210 0
Q ss_pred -chHHHHHHHHhCCCCcEEEecCCCC
Q 025333 128 -KAQKAKKMLKVVPSERILLETDAPD 152 (254)
Q Consensus 128 -~~~~~~~~l~~ip~driLlETD~P~ 152 (254)
....++++++.- =++.+.||++.
T Consensus 281 ~~~~~~~~~~~~G--v~v~lGtD~~~ 304 (449)
T PRK08204 281 HGYPVTGRLLAHG--VRPSLGVDVVT 304 (449)
T ss_pred CCCCcHHHHHhcC--CceeeccccCC
Confidence 011234454442 48899999863
No 45
>PRK07583 cytosine deaminase-like protein; Validated
Probab=97.24 E-value=0.013 Score=55.98 Aligned_cols=95 Identities=9% Similarity=0.011 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhcCCceEEeccch-------HHHHHHHHHhcCCCCCcEEEEeCCCC-------HHHHHHHHHCCcEEee
Q 025333 55 GVFRQQLELAKELKRPASIHCVRA-------FGDLLEIMKSVGPFPDGVIIHSYLGS-------AEMVPELSKLGAYFSF 120 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~a-------~~~~l~il~~~~~~~~~~IiH~fsg~-------~e~~~~~l~~G~y~s~ 120 (254)
+.+.+.+++|+++|+||.+|+... ...+.+.+.+.+....-.+.|++.-+ .+.++.+.+.|+.++.
T Consensus 212 ~~l~~i~~lA~~~G~~v~vH~~E~~~~~~~~l~~~~~~~~~~G~~~~v~i~H~~~l~~~~~~~~~~~i~~la~~gv~vv~ 291 (438)
T PRK07583 212 AQLDRLFRLARERGLDLDLHVDETGDPASRTLKAVAEAALRNGFEGKVTCGHCCSLAVQPEEQAQATIALVAEAGIAIVS 291 (438)
T ss_pred HHHHHHHHHHHHhCCCcEEeECCCCCchHHHHHHHHHHHHHhCCCCCEEEEeccchhcCCHHHHHHHHHHHHHcCCeEEE
Confidence 568889999999999999999532 22233444445542222344987644 3567777888999887
Q ss_pred cccccc-c------------chHHHHHHHHhCCCCcEEEecCCC
Q 025333 121 SGFLMS-M------------KAQKAKKMLKVVPSERILLETDAP 151 (254)
Q Consensus 121 ~~~~~~-~------------~~~~~~~~l~~ip~driLlETD~P 151 (254)
.+.... . ....++++++. + =++.+.||+.
T Consensus 292 ~P~~~~~l~~~~~~~~p~~~~~~~v~~l~~a-G-V~valGtD~~ 333 (438)
T PRK07583 292 LPMCNLYLQDRQPGRTPRWRGVTLVHELKAA-G-IPVAVASDNC 333 (438)
T ss_pred CcchhhhhcCCCcCCCCCCCCcchHHHHHHC-C-CeEEEEeCCC
Confidence 653210 0 01224555544 4 3799999983
No 46
>PRK09358 adenosine deaminase; Provisional
Probab=97.22 E-value=0.026 Score=52.06 Aligned_cols=127 Identities=18% Similarity=0.276 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhcCCceEEeccch--HHHHHHHHHhcCCCCCcEEEEeCCC--CHHHHHHHHHCCcEEeecccccc-c--
Q 025333 55 GVFRQQLELAKELKRPASIHCVRA--FGDLLEIMKSVGPFPDGVIIHSYLG--SAEMVPELSKLGAYFSFSGFLMS-M-- 127 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~a--~~~~l~il~~~~~~~~~~IiH~fsg--~~e~~~~~l~~G~y~s~~~~~~~-~-- 127 (254)
+.|.+.+++|+++|+|+.+|+... ...+.+.+...|. .+ |.|++.- +.+.++.+.+.|+.+.+.+.-.. .
T Consensus 182 ~~~~~~~~~A~~~g~~~~~H~~E~~~~~~~~~al~~lg~--~r-i~Hg~~l~~~~~~~~~l~~~gi~v~~cP~Sn~~l~~ 258 (340)
T PRK09358 182 SKFARAFDRARDAGLRLTAHAGEAGGPESIWEALDELGA--ER-IGHGVRAIEDPALMARLADRRIPLEVCPTSNVQTGA 258 (340)
T ss_pred HHHHHHHHHHHHCCCCeEEcCCCCCchhHHHHHHHHcCC--cc-cchhhhhccCHHHHHHHHHcCCeEEECCCccccccc
Confidence 568899999999999999999853 3456666666664 33 6797754 56678888889999988764211 0
Q ss_pred ----chHHHHHHHHhCCCCcEEEecCCCCCCchhhhhcccccCCCCCCcccccccccCCCCCCCCCccccccCCCCCCCC
Q 025333 128 ----KAQKAKKMLKVVPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLP 203 (254)
Q Consensus 128 ----~~~~~~~~l~~ip~driLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 203 (254)
...-++++++. + =++-+.||.|-..
T Consensus 259 ~~~~~~~pi~~l~~~-G-v~v~lgTD~~~~~------------------------------------------------- 287 (340)
T PRK09358 259 VPSLAEHPLKTLLDA-G-VRVTINTDDPLVF------------------------------------------------- 287 (340)
T ss_pred cCCcccChHHHHHHC-C-CEEEECCCCCccc-------------------------------------------------
Confidence 11224556554 2 2899999987421
Q ss_pred CCCCCCcccHHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 025333 204 KETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRL 242 (254)
Q Consensus 204 ~~~~neP~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~ 242 (254)
..++.+-+..+++..|++.+++.+++ .|+.+.
T Consensus 288 ------~~~l~~e~~~~~~~~~l~~~el~~l~-~nai~~ 319 (340)
T PRK09358 288 ------GTTLTEEYEALAEAFGLSDEDLAQLA-RNALEA 319 (340)
T ss_pred ------CCCHHHHHHHHHHHhCCCHHHHHHHH-HHHHHH
Confidence 02466677778787899999986665 666554
No 47
>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.
Probab=97.19 E-value=0.017 Score=53.88 Aligned_cols=97 Identities=21% Similarity=0.240 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhcCCceEEeccchHHHH-----------HHHHHhcCCCCCc-EEEEeCCCCHHHHHHHHHCCcEEeec
Q 025333 54 VGVFRQQLELAKELKRPASIHCVRAFGDL-----------LEIMKSVGPFPDG-VIIHSYLGSAEMVPELSKLGAYFSFS 121 (254)
Q Consensus 54 ~~vf~~ql~lA~~~~lPvilH~~~a~~~~-----------l~il~~~~~~~~~-~IiH~fsg~~e~~~~~l~~G~y~s~~ 121 (254)
.+.|.+.++.|.++|+||.+|+-...... ++.+.+.+....+ .+.|+..-+.+.++.+.+.|+++++.
T Consensus 193 ~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~l~~~~~~~l~~~gi~~~~~ 272 (411)
T cd01298 193 DELLREVAELAREYGVPLHIHLAETEDEVEESLEKYGKRPVEYLEELGLLGPDVVLAHCVWLTDEEIELLAETGTGVAHN 272 (411)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEecCCCHHHHHHHHHcCCeEEEC
Confidence 46788999999999999999985433222 2223333322233 46698888889999999999998877
Q ss_pred cccccc---chHHHHHHHHhCCCCcEEEecCCCC
Q 025333 122 GFLMSM---KAQKAKKMLKVVPSERILLETDAPD 152 (254)
Q Consensus 122 ~~~~~~---~~~~~~~~l~~ip~driLlETD~P~ 152 (254)
+..... ....++++++. + =++.+.||+|-
T Consensus 273 p~~~~~~~~~~~~~~~~~~~-G-v~~~~GsD~~~ 304 (411)
T cd01298 273 PASNMKLASGIAPVPEMLEA-G-VNVGLGTDGAA 304 (411)
T ss_pred hHHhhhhhhCCCCHHHHHHC-C-CcEEEeCCCCc
Confidence 532110 01123444443 2 25888999863
No 48
>cd01296 Imidazolone-5PH Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate. In bacteria, the enzyme is part of histidine utilization (hut) operon.
Probab=97.19 E-value=0.0071 Score=55.98 Aligned_cols=135 Identities=23% Similarity=0.199 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHhcCCceEEeccchH-HHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCcEEeecccccc-cc--h
Q 025333 54 VGVFRQQLELAKELKRPASIHCVRAF-GDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMS-MK--A 129 (254)
Q Consensus 54 ~~vf~~ql~lA~~~~lPvilH~~~a~-~~~l~il~~~~~~~~~~IiH~fsg~~e~~~~~l~~G~y~s~~~~~~~-~~--~ 129 (254)
.+.+++.+++|+++|++|.+|+.... ....+.....+. ..+.|+..-+.+.++.+.+.|..+++.+.... .. .
T Consensus 192 ~~~~~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~g~---~~i~H~~~~~~~~i~~la~~g~~v~~~P~~~~~l~~~~ 268 (371)
T cd01296 192 LEQSRRILEAAKEAGLPVKIHADELSNIGGAELAAELGA---LSADHLEHTSDEGIAALAEAGTVAVLLPGTAFSLRETY 268 (371)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEcCcCCCCHHHHHHHcCC---CeeHHhcCCCHHHHHHHHHcCCeEEEChHHHHHhCCCC
Confidence 35778899999999999999997421 011233334442 23669888888999999999999887653110 00 1
Q ss_pred HHHHHHHHhCCCCcEEEecCC-CCCCchhhhhcccccCCCCCCcccccccccCCCCCCCCCccccccCCCCCCCCCCCCC
Q 025333 130 QKAKKMLKVVPSERILLETDA-PDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLN 208 (254)
Q Consensus 130 ~~~~~~l~~ip~driLlETD~-P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~n 208 (254)
..++++++. + =++.+.||+ |+..+.
T Consensus 269 ~~~~~l~~~-G-v~v~lgsD~~p~~~~~---------------------------------------------------- 294 (371)
T cd01296 269 PPARKLIDA-G-VPVALGTDFNPGSSPT---------------------------------------------------- 294 (371)
T ss_pred CCHHHHHHC-C-CcEEEecCCCCCCChH----------------------------------------------------
Confidence 224455544 2 378899996 432100
Q ss_pred CcccHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCCC
Q 025333 209 HPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEG 247 (254)
Q Consensus 209 eP~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~~ 247 (254)
.++...+.......+++.+++.+..+.|..+++++++
T Consensus 295 --~~l~~~~~~~~~~~~l~~~~al~~aT~~~A~~lg~~~ 331 (371)
T cd01296 295 --SSMPLVMHLACRLMRMTPEEALTAATINAAAALGLGE 331 (371)
T ss_pred --HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCC
Confidence 0144444444556789999999999999999999864
No 49
>cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.
Probab=97.18 E-value=0.011 Score=57.00 Aligned_cols=99 Identities=21% Similarity=0.238 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHhcCCceEEeccc--hHHHHHHHHHhc----CCCCC-cEEEEeCCCCHHHHHHHHHCCcEEeecccccc
Q 025333 54 VGVFRQQLELAKELKRPASIHCVR--AFGDLLEIMKSV----GPFPD-GVIIHSYLGSAEMVPELSKLGAYFSFSGFLMS 126 (254)
Q Consensus 54 ~~vf~~ql~lA~~~~lPvilH~~~--a~~~~l~il~~~----~~~~~-~~IiH~fsg~~e~~~~~l~~G~y~s~~~~~~~ 126 (254)
.+-+.+.++.|.++|+||.+|+.. +...+++.+++. +.... ..|.|+...+.+.++++.+.|+++++.+...+
T Consensus 294 ~e~l~~~~~~a~~~g~~v~~Ha~gd~~i~~~l~~~~~~~~~~g~~~~r~~i~H~~~~~~~~~~~l~~~gv~~~~~P~~~~ 373 (479)
T cd01300 294 PEELEELVRAADEAGLQVAIHAIGDRAVDTVLDALEAALKDNPRADHRHRIEHAQLVSPDDIPRFAKLGVIASVQPNHLY 373 (479)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHHHHHhcCCCCCCceeeecccCCHHHHHHHHHcCCceEeCccccc
Confidence 467889999999999999999985 233444544432 21112 35669998889999999999999988764221
Q ss_pred c----------ch------HHHHHHHHhCCCCcEEEecCCCCCC
Q 025333 127 M----------KA------QKAKKMLKVVPSERILLETDAPDAL 154 (254)
Q Consensus 127 ~----------~~------~~~~~~l~~ip~driLlETD~P~~~ 154 (254)
. .. ..++.+++. + -++.+.||+|...
T Consensus 374 ~~~~~~~~~~lg~~~~~~~~p~~~~~~~-G-v~v~lGSD~~~~~ 415 (479)
T cd01300 374 SDGDAAEDRRLGEERAKRSYPFRSLLDA-G-VPVALGSDAPVAP 415 (479)
T ss_pred CchHHHHHhcccHHHHhcCchHHHHHHC-C-CeeeccCCCCCCC
Confidence 1 00 112333333 2 3789999998653
No 50
>PLN02942 dihydropyrimidinase
Probab=97.14 E-value=0.036 Score=53.86 Aligned_cols=35 Identities=11% Similarity=0.230 Sum_probs=26.8
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCCC
Q 025333 213 IHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEG 247 (254)
Q Consensus 213 l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~~ 247 (254)
++..+..+..-..++.+++.+.++.|..++|++.+
T Consensus 349 l~~~~~~~~~~~~i~~~~~l~~~t~~pA~~lgl~~ 383 (486)
T PLN02942 349 MHLVWDTMVESGQISPTDYVRVTSTECAKIFNIYP 383 (486)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCCC
Confidence 44444444444569999999999999999999854
No 51
>PRK07228 N-ethylammeline chlorohydrolase; Provisional
Probab=97.11 E-value=0.023 Score=54.20 Aligned_cols=97 Identities=15% Similarity=0.139 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHhcCCceEEeccchHHHHH-----------HHHHhcCCCCCc-EEEEeCCCCHHHHHHHHHCCcEEeec
Q 025333 54 VGVFRQQLELAKELKRPASIHCVRAFGDLL-----------EIMKSVGPFPDG-VIIHSYLGSAEMVPELSKLGAYFSFS 121 (254)
Q Consensus 54 ~~vf~~ql~lA~~~~lPvilH~~~a~~~~l-----------~il~~~~~~~~~-~IiH~fsg~~e~~~~~l~~G~y~s~~ 121 (254)
.+.+++.+++|.++|+|+.+|+.....++- +.+.+.+....+ .+.||..-+.+.++.+.+.|+.+++.
T Consensus 198 ~~~l~~~~~~a~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~l~~~g~~~~~~~l~H~~~~~~~~~~~~~~~g~~v~~~ 277 (445)
T PRK07228 198 EELLRGVRDLADEYGVRIHTHASENRGEIETVEEETGMRNIHYLDEVGLTGEDLILAHCVWLDEEEREILAETGTHVTHC 277 (445)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCCCHHHHHHHCCCCCCCcEEEEEecCCHHHHHHHHHcCCeEEEC
Confidence 356888999999999999999976433322 233333322223 46699888888999999999998876
Q ss_pred cccccc---chHHHHHHHHhCCCCcEEEecCCCC
Q 025333 122 GFLMSM---KAQKAKKMLKVVPSERILLETDAPD 152 (254)
Q Consensus 122 ~~~~~~---~~~~~~~~l~~ip~driLlETD~P~ 152 (254)
+..... ....++++++.- -++.+.||++.
T Consensus 278 P~~~~~~~~~~~p~~~~~~~G--v~v~lGtD~~~ 309 (445)
T PRK07228 278 PSSNLKLASGIAPVPDLLERG--INVALGADGAP 309 (445)
T ss_pred hHHhhhcccccCcHHHHHHCC--CeEEEcCCCCc
Confidence 531100 012245555543 47899999754
No 52
>PRK07572 cytosine deaminase; Validated
Probab=97.11 E-value=0.018 Score=54.86 Aligned_cols=124 Identities=14% Similarity=0.196 Sum_probs=74.7
Q ss_pred HHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccch-------HHHHHHHHHhcCC
Q 025333 19 FSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRA-------FGDLLEIMKSVGP 91 (254)
Q Consensus 19 l~~l~~ll~~~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a-------~~~~l~il~~~~~ 91 (254)
.+.+++.++.+ +..|| |.++... ......+.+++.+++|+++|+||.+|+-.. .+.+.+.+.+.|.
T Consensus 162 ~~~~~~~l~~g-~d~iG--g~p~~~~----~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~G~ 234 (426)
T PRK07572 162 VDNLERALDMG-VDVVG--GIPHFER----TMADGAESVRLLCEIAAERGLRVDMHCDESDDPLSRHIETLAAETQRLGL 234 (426)
T ss_pred HHHHHHHHHcC-CCEEe--CCCCCcc----ccchHHHHHHHHHHHHHHcCCCeEEEECCCCChhHHHHHHHHHHHHHhCC
Confidence 44566666543 45566 5555431 112334779999999999999999999532 2234455556665
Q ss_pred CCCcEEEEeCCCC-------HHHHHHHHHCCcEEeecccccc-c-----------chHHHHHHHHhCCCCcEEEecCCC
Q 025333 92 FPDGVIIHSYLGS-------AEMVPELSKLGAYFSFSGFLMS-M-----------KAQKAKKMLKVVPSERILLETDAP 151 (254)
Q Consensus 92 ~~~~~IiH~fsg~-------~e~~~~~l~~G~y~s~~~~~~~-~-----------~~~~~~~~l~~ip~driLlETD~P 151 (254)
.....+.||..-+ .+.++.+.+.|.++..++.... . ....++++++. + =++.+.||++
T Consensus 235 ~~~v~~~H~~~l~~~~~~~~~~~~~~la~~g~~vv~~P~~n~~l~~~~~~~~~~~g~~~v~~l~~~-G-V~v~lGtD~~ 311 (426)
T PRK07572 235 QGRVAGSHLTSMHSMDNYYVSKLIPLMAEAGVNAIANPLINITLQGRHDTYPKRRGMTRVPELMAA-G-INVAFGHDCV 311 (426)
T ss_pred CCCEEEEccchhhcCCHHHHHHHHHHHHHcCCeEEECchhhhhhcCCCCCCCCCCCCcCHHHHHHC-C-CcEEEecCCC
Confidence 4322345986533 2567777888999988763110 0 01124555554 3 3699999985
No 53
>cd01305 archeal_chlorohydrolases Predicted chlorohydrolases. These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases.
Probab=97.08 E-value=0.0072 Score=53.55 Aligned_cols=90 Identities=18% Similarity=0.176 Sum_probs=63.2
Q ss_pred HHHHHHHHHhcCCceEEeccchHH----HHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCcEEeecccccc-c--ch
Q 025333 57 FRQQLELAKELKRPASIHCVRAFG----DLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMS-M--KA 129 (254)
Q Consensus 57 f~~ql~lA~~~~lPvilH~~~a~~----~~l~il~~~~~~~~~~IiH~fsg~~e~~~~~l~~G~y~s~~~~~~~-~--~~ 129 (254)
|++.+++|+++|+|+.+|+-.... ..++.+.+.++ ..+.|+..-+.+.++.+.+.|++++..+.... . ..
T Consensus 127 l~~~~~~A~~~g~~v~~H~~e~~~~~g~~~i~~~~~~~~---~~i~H~~~l~~~~~~~la~~g~~v~~~P~sn~~l~~g~ 203 (263)
T cd01305 127 LEDILELLRRRGKLFAIHASETRESVGMTDIERALDLEP---DLLVHGTHLTDEDLELVRENGVPVVLCPRSNLYFGVGI 203 (263)
T ss_pred HHHHHHHHHHCCCeeEEecCCCCCCCCchhHHHHHhCCC---CEEEEcCCCCHHHHHHHHHcCCcEEEChhhHHHhCCCC
Confidence 899999999999999999986432 22334444432 35789998889999999999999998763110 0 01
Q ss_pred HHHHHHHHhCCCCcEEEecCCC
Q 025333 130 QKAKKMLKVVPSERILLETDAP 151 (254)
Q Consensus 130 ~~~~~~l~~ip~driLlETD~P 151 (254)
..++++++.- -++-+.||++
T Consensus 204 ~p~~~l~~~G--v~v~lGtD~~ 223 (263)
T cd01305 204 PPVAELLKLG--IKVLLGTDNV 223 (263)
T ss_pred CCHHHHHHCC--CcEEEECCCC
Confidence 1245555553 5888999975
No 54
>PF01244 Peptidase_M19: Membrane dipeptidase (Peptidase family M19); InterPro: IPR008257 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of peptidases belong to the MEROPS peptidase family M19 (membrane dipeptidase family, clan MJ). The protein fold of the peptidase domain for members of this family resembles that of Klebsiella urease, the type example for clan MJ. Renal dipeptidase (rDP) (3.4.13.19 from EC), also known as microsomal dipeptidase, is a zinc-dependent metalloenzyme that hydrolyzes a wide range of dipeptides. It is involved in renal metabolism of glutathione and its conjugates. It is a homodimeric disulphide-linked glycoprotein attached to the renal brush border microvilli membrane by a GPI-anchor. A glutamate residue has recently been shown [,] to be important for the catalytic activity of rDP. rDP seems to be evolutionary related to hypothetical proteins in the PQQ biosynthesis operons of Acinetobacter calcoaceticus and Klebsiella pneumoniae.; GO: 0008235 metalloexopeptidase activity, 0008239 dipeptidyl-peptidase activity, 0016805 dipeptidase activity, 0006508 proteolysis; PDB: 3NEH_B 2RAG_D 3LU2_A 3B40_A 3LY0_A 3FDG_B 2I5G_B 3S2J_A 3S2N_A 3S2L_A ....
Probab=97.04 E-value=0.0062 Score=56.23 Aligned_cols=132 Identities=13% Similarity=0.204 Sum_probs=81.5
Q ss_pred HHHHHHhcCCceEE-eccchHHHHHHHHHhcCCCCCcEEE-EeC---------CCCHHHHHHHHHCCcEEeecccccccc
Q 025333 60 QLELAKELKRPASI-HCVRAFGDLLEIMKSVGPFPDGVII-HSY---------LGSAEMVPELSKLGAYFSFSGFLMSMK 128 (254)
Q Consensus 60 ql~lA~~~~lPvil-H~~~a~~~~l~il~~~~~~~~~~Ii-H~f---------sg~~e~~~~~l~~G~y~s~~~~~~~~~ 128 (254)
.++...++|..|=+ |+-. ..+.++++-.. ..+|. |+. +-+.++++.+.+.|-.++++....+.+
T Consensus 165 vV~~mn~lGm~vDvSH~s~--~t~~Dv~~~s~---~PviaSHSn~ral~~h~RNltDe~iraia~~GGviGi~~~~~fl~ 239 (320)
T PF01244_consen 165 VVREMNRLGMLVDVSHLSE--KTFWDVLEISK---KPVIASHSNARALCPHPRNLTDEQIRAIAERGGVIGINFYPAFLG 239 (320)
T ss_dssp HHHHHHHHT-EEE-TTB-H--HHHHHHHHH-S---SEEEECCEEBTTTS--TTSB-HHHHHHHHHTT-EEEEESSHHHHS
T ss_pred HHHHHHHcCCeeeeccCCH--HHHHHHHhhcC---CCEEEeccChHhhCCCCCCCCHHHHHHHHHCCcEEEEEcchhhhc
Confidence 44455666755433 5553 22334444332 12344 632 446788999999999999997543322
Q ss_pred h--------HH----HHHHHHhCCCCcEEEecCCCCCCchhhhhcccccCCCCCCcccccccccCCCCCCCCCccccccC
Q 025333 129 A--------QK----AKKMLKVVPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHAS 196 (254)
Q Consensus 129 ~--------~~----~~~~l~~ip~driLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 196 (254)
. +. +.-+++.++.|+|=+.||+......|
T Consensus 240 ~~~~~~~~~~~~~~Hi~y~~~l~G~dhVgiGsDfdg~~~~~--------------------------------------- 280 (320)
T PF01244_consen 240 DDWDPRASLDDLVDHIDYIVDLVGIDHVGIGSDFDGIDGPP--------------------------------------- 280 (320)
T ss_dssp TTHSSG-BHHHHHHHHHHHHHHH-GGGEEEE--BTTTSSHB---------------------------------------
T ss_pred ccccccccHHHHHHHHHHHHHhcCCCeEEECcccCCCCCCC---------------------------------------
Confidence 2 22 33466678999999999994432211
Q ss_pred CCCCCCCCCCCCCcccHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcC
Q 025333 197 KDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFS 244 (254)
Q Consensus 197 ~~~~~~~~~~~neP~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~ 244 (254)
.....|..++.+.+.+.+ +|.+.+++..+++.|+.|+|.
T Consensus 281 --------~gl~~~~~~~~l~~~L~~-rG~s~~~i~kI~g~N~lRv~~ 319 (320)
T PF01244_consen 281 --------EGLEDPSDLPNLTEELLK-RGYSEEDIEKILGGNFLRVLR 319 (320)
T ss_dssp --------BTBSSGGGHHHHHHHHHH-TTS-HHHHHHHHTHHHHHHHH
T ss_pred --------CccCCHHHHHHHHHHHHH-CCCCHHHHHHHHhHhHHHHhc
Confidence 145668899999999977 899999999999999999984
No 55
>PRK15493 5-methylthioadenosine/S-adenosylhomocysteine deaminase; Provisional
Probab=96.98 E-value=0.028 Score=53.72 Aligned_cols=95 Identities=18% Similarity=0.139 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhcCCceEEeccchHHH-----------HHHHHHhcCCCCCc-EEEEeCCCCHHHHHHHHHCCcEEeecc
Q 025333 55 GVFRQQLELAKELKRPASIHCVRAFGD-----------LLEIMKSVGPFPDG-VIIHSYLGSAEMVPELSKLGAYFSFSG 122 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~a~~~-----------~l~il~~~~~~~~~-~IiH~fsg~~e~~~~~l~~G~y~s~~~ 122 (254)
+.+++..++|+++|+|+.+|+-....+ .++.+.+.|....+ .+.||..-+.+.++.+.+.|+.++..+
T Consensus 197 e~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~~~g~~~~~~l~~~Gll~~~~~~~H~~~l~~~d~~~la~~g~~v~~~P 276 (435)
T PRK15493 197 ELLEECARIAVENQTMVHIHLSETEREVRDIEAQYGKRPVEYAASCGLFKRPTVIAHGVVLNDNERAFLAEHDVRVAHNP 276 (435)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCCCHHHHHHHcCCCCCCcEEEEeecCCHHHHHHHHHcCCeEEECh
Confidence 578899999999999999999764332 23555555543333 466988888889999999999998876
Q ss_pred cccc-cc--hHHHHHHHHhCCCCcEEEecCCC
Q 025333 123 FLMS-MK--AQKAKKMLKVVPSERILLETDAP 151 (254)
Q Consensus 123 ~~~~-~~--~~~~~~~l~~ip~driLlETD~P 151 (254)
.... .. ...++++++.- =++-+.||++
T Consensus 277 ~sn~~l~~g~~p~~~~~~~G--v~v~lGtD~~ 306 (435)
T PRK15493 277 NSNLKLGSGIANVKAMLEAG--IKVGIATDSV 306 (435)
T ss_pred HHHHHHhcCcccHHHHHHCC--CeEEEccCcc
Confidence 4210 00 01134444432 3789999974
No 56
>PRK06380 metal-dependent hydrolase; Provisional
Probab=96.95 E-value=0.03 Score=52.92 Aligned_cols=95 Identities=16% Similarity=0.208 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHhcCCceEEeccchHHHHHHHHHhcCC-----------CCCc-EEEEeCCCCHHHHHHHHHCCcEEeecc
Q 025333 55 GVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGP-----------FPDG-VIIHSYLGSAEMVPELSKLGAYFSFSG 122 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~a~~~~l~il~~~~~-----------~~~~-~IiH~fsg~~e~~~~~l~~G~y~s~~~ 122 (254)
+.++...++|+++|+|+.+|+.....++.....+++. ...+ .+.||..-+.+.++.+.+.|+.+++.+
T Consensus 186 e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~ie~~~~~g~l~~~~~~~H~~~l~~~d~~~la~~g~~v~~~P 265 (418)
T PRK06380 186 ETYLKAKEIAEKYDTIMHMHLSETRKEVYDHVKRTGERPVEHLEKIGFLNSKLIAAHCVWATYHEIKLLSKNGVKVSWNS 265 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHHhCCCHHHHHHHCCCCCCCeEEEEeecCCHHHHHHHHHcCCEEEECH
Confidence 6799999999999999999999876555544444332 1223 455988778889999999999998876
Q ss_pred cccc-cc---hHHHHHHHHhCCCCcEEEecCCC
Q 025333 123 FLMS-MK---AQKAKKMLKVVPSERILLETDAP 151 (254)
Q Consensus 123 ~~~~-~~---~~~~~~~l~~ip~driLlETD~P 151 (254)
.... .. ...++++++. + =++-+.||++
T Consensus 266 ~sn~~l~~~g~~p~~~~~~~-G-v~v~lGTD~~ 296 (418)
T PRK06380 266 VSNFKLGTGGSPPIPEMLDN-G-INVTIGTDSN 296 (418)
T ss_pred HHHHhhccCCCCcHHHHHHC-C-CeEEEcCCCC
Confidence 4211 00 1124455544 3 4799999986
No 57
>PRK10027 cryptic adenine deaminase; Provisional
Probab=96.95 E-value=0.039 Score=55.07 Aligned_cols=164 Identities=13% Similarity=0.104 Sum_probs=111.1
Q ss_pred HHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccchHHHHHHHHHhcCCCCCcEEE
Q 025333 19 FSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVII 98 (254)
Q Consensus 19 l~~l~~ll~~~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a~~~~l~il~~~~~~~~~~Ii 98 (254)
.+.+++++..++++++||+ +||... .....+++.+.. .| .++++-=|++.....-+...-..|... -
T Consensus 168 ~~~~~~~l~~~~v~glgEv-Mn~~~V-----~~~d~~~~~ki~-~~--~~~~idGH~p~l~g~~L~ay~aaGi~s----D 234 (588)
T PRK10027 168 LEQMLAWRDHPQVTGLAEM-MDYPGV-----ISGQNALLDKLD-AF--RHLTLDGHCPGLGGKELNAYIAAGIEN----C 234 (588)
T ss_pred HHHHHHHhcCCCceeEEec-cCcccc-----ccCCHHHHHHHH-Hh--CCCceECCCCCCChHHHHHHHHcCCCC----C
Confidence 5678888888999999996 555432 223445666655 33 899999999987666665554555422 2
Q ss_pred EeCCCCHHHHHHHHHCCcEEeecccccccchHHHHHHHHhCCCCcEEEecCCCCCCchhhhhcccccCCCCCCccccccc
Q 025333 99 HSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQKAKKMLKVVPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAK 178 (254)
Q Consensus 99 H~fsg~~e~~~~~l~~G~y~s~~~~~~~~~~~~~~~~l~~ip~driLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~ 178 (254)
|-.+ +.+++.+=++.|.|+-+=..-...+-+.+..++.....+|++|=||.-. |....
T Consensus 235 HE~~-t~eea~eklr~Gm~v~iRegS~~~nl~~l~~~~~~~~~~~~~l~TDd~~--~~~l~------------------- 292 (588)
T PRK10027 235 HESY-QLEEGRRKLQLGMSLMIREGSAARNLNALAPLINEFNSPQCMLCTDDRN--PWEIA------------------- 292 (588)
T ss_pred cccC-CHHHHHHHHHCCCEEEEeCCccccCHHHHHHHhhccCCCeEEEEcCCCC--hHHHH-------------------
Confidence 6332 5778887788999998763211222244445555555689999999743 22110
Q ss_pred ccCCCCCCCCCccccccCCCCCCCCCCCCCCcccHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCCC
Q 025333 179 EEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEG 247 (254)
Q Consensus 179 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~neP~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~~ 247 (254)
..| .+...++.+.+..|+++++..+..+.|..+.|++++
T Consensus 293 ---------------~~G---------------hi~~~vr~av~~~Gi~~~~Ai~mAT~nPA~~lgl~d 331 (588)
T PRK10027 293 ---------------HEG---------------HIDALIRRLIEQHNVPLHVAYRVASWSTARHFGLNH 331 (588)
T ss_pred ---------------hcc---------------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCC
Confidence 002 567777777777899999999999999999999974
No 58
>PRK06038 N-ethylammeline chlorohydrolase; Provisional
Probab=96.95 E-value=0.023 Score=54.15 Aligned_cols=95 Identities=17% Similarity=0.122 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHhcCCceEEeccchHHH-----------HHHHHHhcCCCCCcE-EEEeCCCCHHHHHHHHHCCcEEeecc
Q 025333 55 GVFRQQLELAKELKRPASIHCVRAFGD-----------LLEIMKSVGPFPDGV-IIHSYLGSAEMVPELSKLGAYFSFSG 122 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~a~~~-----------~l~il~~~~~~~~~~-IiH~fsg~~e~~~~~l~~G~y~s~~~ 122 (254)
+.++..+++|+++|+||.+|+-....+ .++.+.+.+....+. +.||..-+.+.++.+.+.|++++..+
T Consensus 190 e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~G~~~i~~l~~~g~l~~r~~~~H~~~l~~~~~~~la~~g~~v~~~P 269 (430)
T PRK06038 190 EFLSKVKKLANKDGVGIHIHVLETEAELNQMKEQYGMCSVNYLDDIGFLGPDVLAAHCVWLSDGDIEILRERGVNVSHNP 269 (430)
T ss_pred HHHHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEEecCCHHHHHHHHhcCCEEEECh
Confidence 578889999999999999999975432 234455555333344 46999888999999999999999876
Q ss_pred ccccc---chHHHHHHHHhCCCCcEEEecCCC
Q 025333 123 FLMSM---KAQKAKKMLKVVPSERILLETDAP 151 (254)
Q Consensus 123 ~~~~~---~~~~~~~~l~~ip~driLlETD~P 151 (254)
..... ...-++++++. + =++-+.||++
T Consensus 270 ~~n~~~~~~~~p~~~~~~~-G-v~v~lGtD~~ 299 (430)
T PRK06038 270 VSNMKLASGIAPVPKLLER-G-VNVSLGTDGC 299 (430)
T ss_pred HHhhhhccCCCCHHHHHHC-C-CeEEEeCCCC
Confidence 42110 01124455554 2 3799999975
No 59
>PRK09356 imidazolonepropionase; Validated
Probab=96.95 E-value=0.02 Score=53.76 Aligned_cols=134 Identities=18% Similarity=0.133 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHhcCCceEEeccchH-HHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCcEEeecccccc-cc---h
Q 025333 55 GVFRQQLELAKELKRPASIHCVRAF-GDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMS-MK---A 129 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~a~-~~~l~il~~~~~~~~~~IiH~fsg~~e~~~~~l~~G~y~s~~~~~~~-~~---~ 129 (254)
+.+.+.+++|.++|+||.+|+.... ..-++.+.+.+. ..+.|++.-+.+.++.+.+.|+++++.+.... .. .
T Consensus 222 ~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~~---~~~~H~~~~~~~~~~~la~~g~~~~~~P~~~~~l~~~~~ 298 (406)
T PRK09356 222 EQSERVLEAAKALGLPVKIHAEQLSNLGGAELAAEYGA---LSADHLEYLDEAGIAAMAEAGTVAVLLPGAFYFLRETQY 298 (406)
T ss_pred HHHHHHHHHHHHCCCCEEEEEecccCCCHHHHHHHcCC---cEehHhhcCCHHHHHHHHHhCCEEEECccchhhcCcccC
Confidence 5677889999999999999996311 111333444432 24669888888899999899999987764211 11 1
Q ss_pred HHHHHHHHhCCCCcEEEecCCCC-CCchhhhhcccccCCCCCCcccccccccCCCCCCCCCccccccCCCCCCCCCCCCC
Q 025333 130 QKAKKMLKVVPSERILLETDAPD-ALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLN 208 (254)
Q Consensus 130 ~~~~~~l~~ip~driLlETD~P~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~n 208 (254)
...+++++. + -++.+.||.+. ..|.
T Consensus 299 ~~~~~l~~~-G-i~v~lgtD~~~~~~~~---------------------------------------------------- 324 (406)
T PRK09356 299 PPARLLRDA-G-VPVALATDFNPGSSPT---------------------------------------------------- 324 (406)
T ss_pred chHHHHHHC-C-CeEEEeCCCCCCCChh----------------------------------------------------
Confidence 223445444 2 68999999742 1110
Q ss_pred CcccHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCCC
Q 025333 209 HPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEG 247 (254)
Q Consensus 209 eP~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~~ 247 (254)
..+...+.......+++.+++.+..+.|..+.+++++
T Consensus 325 --~~~~~~~~~~~~~~~l~~~~~l~~~T~~~A~~~g~~~ 361 (406)
T PRK09356 325 --ESLLLAMNMACTLFRLTPEEALAAVTINAARALGRQD 361 (406)
T ss_pred --HHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhCCCC
Confidence 0233333322234689999999999999999999854
No 60
>PLN02795 allantoinase
Probab=96.90 E-value=0.11 Score=50.81 Aligned_cols=37 Identities=14% Similarity=0.038 Sum_probs=29.6
Q ss_pred CcccHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCC
Q 025333 209 HPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYE 246 (254)
Q Consensus 209 eP~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~ 246 (254)
-...++.++..+. -.+++.+++.+.+..|..++|+++
T Consensus 392 le~~l~~~~~~~~-~~~l~l~~~v~~~s~~pA~~~gl~ 428 (505)
T PLN02795 392 LQFVLPATWTAGR-AYGLTLEQLARWWSERPAKLAGLD 428 (505)
T ss_pred HHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHhCCC
Confidence 3456777776553 457999999999999999999994
No 61
>PRK08393 N-ethylammeline chlorohydrolase; Provisional
Probab=96.89 E-value=0.037 Score=52.65 Aligned_cols=96 Identities=16% Similarity=0.222 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHhcCCceEEeccchHHHHH-----------HHHHhcCCCCCc-EEEEeCCCCHHHHHHHHHCCcEEeecc
Q 025333 55 GVFRQQLELAKELKRPASIHCVRAFGDLL-----------EIMKSVGPFPDG-VIIHSYLGSAEMVPELSKLGAYFSFSG 122 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~a~~~~l-----------~il~~~~~~~~~-~IiH~fsg~~e~~~~~l~~G~y~s~~~ 122 (254)
+.+++..++|+++|+|+.+|+-....++- +.+.+.+....+ .+.|+..-+.+.++.+.+.|++++..+
T Consensus 189 ~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~l~~~G~l~~~~~~~H~~~l~~~~l~~la~~g~~v~~~P 268 (424)
T PRK08393 189 ALLKWVREKAREWNKLITIHLSETMDEIKQIREKYGKSPVVLLDEIGFLNEDVIAAHGVWLSSRDIRILASAGVTVAHNP 268 (424)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCcCHHHHHHHcCCCCCCcEEEEeecCCHHHHHHHHhcCCEEEECH
Confidence 68889999999999999999976544333 334444533233 466999888999999999999998876
Q ss_pred cccc-cc--hHHHHHHHHhCCCCcEEEecCCCC
Q 025333 123 FLMS-MK--AQKAKKMLKVVPSERILLETDAPD 152 (254)
Q Consensus 123 ~~~~-~~--~~~~~~~l~~ip~driLlETD~P~ 152 (254)
.... .. ...++++++.- -++.+.||++.
T Consensus 269 ~sn~~lg~g~~~~~~~~~~G--v~v~lGtD~~~ 299 (424)
T PRK08393 269 ASNMKLGSGVMPLRKLLNAG--VNVALGTDGAA 299 (424)
T ss_pred HHHHhhccCCCCHHHHHHCC--CcEEEecCCCc
Confidence 3100 00 01134555443 68999999864
No 62
>cd01303 GDEase Guanine deaminase (GDEase). Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool.
Probab=96.87 E-value=0.047 Score=52.09 Aligned_cols=96 Identities=19% Similarity=0.153 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhcC-CceEEeccchHHHHHH-------------HHHhcCCCCCc-EEEEeCCCCHHHHHHHHHCCcEEe
Q 025333 55 GVFRQQLELAKELK-RPASIHCVRAFGDLLE-------------IMKSVGPFPDG-VIIHSYLGSAEMVPELSKLGAYFS 119 (254)
Q Consensus 55 ~vf~~ql~lA~~~~-lPvilH~~~a~~~~l~-------------il~~~~~~~~~-~IiH~fsg~~e~~~~~l~~G~y~s 119 (254)
+.+++..++|+++| +|+.+|+-....++.. .+.+.|....+ .+.||..-+.+.++.+.+.|+.++
T Consensus 208 e~l~~~~~~A~~~g~~~v~~H~~e~~~e~~~~~~~~g~~~~p~~~l~~~G~l~~~~~l~H~~~l~~~~~~~l~~~g~~v~ 287 (429)
T cd01303 208 ELLAALGKLAKEHPDLHIQTHISENLDEIAWVKELFPGARDYLDVYDKYGLLTEKTVLAHCVHLSEEEFNLLKERGASVA 287 (429)
T ss_pred HHHHHHHHHHHHCCCCeEEEeeCCCHHHHHHHHHHcCCCCCHHHHHHHCCCCCCCcEEEeCCCCCHHHHHHHHHcCCEEE
Confidence 56888999999999 9999999865444333 34444432233 466999888999999999999988
Q ss_pred ecccccc-c--chHHHHHHHHhCCCCcEEEecCCCC
Q 025333 120 FSGFLMS-M--KAQKAKKMLKVVPSERILLETDAPD 152 (254)
Q Consensus 120 ~~~~~~~-~--~~~~~~~~l~~ip~driLlETD~P~ 152 (254)
+.+.... . ....++++++. + =++.+.||++.
T Consensus 288 ~~P~sn~~l~~g~~~~~~~~~~-G-v~v~lGtD~~~ 321 (429)
T cd01303 288 HCPTSNLFLGSGLFDVRKLLDA-G-IKVGLGTDVGG 321 (429)
T ss_pred ECccchhhhccCCCCHHHHHHC-C-CeEEEeccCCC
Confidence 7764211 0 01123445444 2 36889999863
No 63
>PRK12393 amidohydrolase; Provisional
Probab=96.86 E-value=0.055 Score=52.08 Aligned_cols=96 Identities=13% Similarity=0.004 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHhcCCceEEeccchHHHHHHHHHh-----------cCCCCCc-EEEEeCCCCHHHHHHHHHCCcEEeecc
Q 025333 55 GVFRQQLELAKELKRPASIHCVRAFGDLLEIMKS-----------VGPFPDG-VIIHSYLGSAEMVPELSKLGAYFSFSG 122 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~a~~~~l~il~~-----------~~~~~~~-~IiH~fsg~~e~~~~~l~~G~y~s~~~ 122 (254)
+.|+..+++|.++|+|+.+|+.....++-..++. .+....+ .+.||..-+.+.++.+.+.|..++..+
T Consensus 218 e~l~~~~~~a~~~g~~~~~H~~e~~~~~~~~~~~~g~~~~~~l~~~g~l~~~~~~~H~~~l~~~d~~~la~~g~~v~~~P 297 (457)
T PRK12393 218 ELLREVARAARGMGLRLHSHLSETVDYVDFCREKYGMTPVQFVAEHDWLGPDVWFAHLVKLDAEEIALLAQTGTGIAHCP 297 (457)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEEecCCHHHHHHHHHcCCeEEECc
Confidence 6888899999999999999998765444433333 3322223 356998888999999999999998876
Q ss_pred cccc-c--chHHHHHHHHhCCCCcEEEecCCCC
Q 025333 123 FLMS-M--KAQKAKKMLKVVPSERILLETDAPD 152 (254)
Q Consensus 123 ~~~~-~--~~~~~~~~l~~ip~driLlETD~P~ 152 (254)
.... . ....++++++. + =++.+.||++.
T Consensus 298 ~sn~~lg~g~~~~~~~~~~-G-v~v~lGtD~~~ 328 (457)
T PRK12393 298 QSNGRLGSGIAPALAMEAA-G-VPVSLGVDGAA 328 (457)
T ss_pred hhhhhhcccCCCHHHHHHC-C-CeEEEecCCcc
Confidence 4210 0 01124555554 3 37999999854
No 64
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=96.84 E-value=0.015 Score=53.66 Aligned_cols=35 Identities=9% Similarity=0.151 Sum_probs=27.1
Q ss_pred cHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCCCC
Q 025333 212 NIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEGS 248 (254)
Q Consensus 212 ~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~~~ 248 (254)
.++.++. +.+ ++++.+.+.+.+..|..++||+.+.
T Consensus 266 ~l~~~~~-~~~-~~l~l~~~v~~~s~nPA~i~gl~~~ 300 (335)
T cd01294 266 ALPYLAE-VFE-EHNALDKLEAFASDNGPNFYGLPPN 300 (335)
T ss_pred HHHHHHH-HHh-ccCCHHHHHHHHHhHHHHHhCCCCC
Confidence 4555553 334 5899999999999999999999653
No 65
>cd01313 Met_dep_hydrolase_E Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=96.79 E-value=0.053 Score=51.56 Aligned_cols=95 Identities=19% Similarity=0.216 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHhcCCceEEeccchHHHH-----------HHHHHhcCCCCCc-EEEEeCCCCHHHHHHHHHCCcEEeecc
Q 025333 55 GVFRQQLELAKELKRPASIHCVRAFGDL-----------LEIMKSVGPFPDG-VIIHSYLGSAEMVPELSKLGAYFSFSG 122 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~a~~~~-----------l~il~~~~~~~~~-~IiH~fsg~~e~~~~~l~~G~y~s~~~ 122 (254)
+.+++..++|++ |+|+.+|+-....++ ++.+.+.+....+ .+.||..-+.+.++.+.+.|..+++.+
T Consensus 207 e~l~~~~~~a~~-g~~i~~H~~e~~~e~~~~~~~~g~~~i~~l~~~g~l~~~~~~~H~~~l~~~~~~~la~~g~~v~~~P 285 (418)
T cd01313 207 EQLAALAALASE-KAPVHIHLAEQPKEVDDCLAAHGRRPVELLLDHGHLDARWCLVHATHLTDNETLLLGRSGAVVGLCP 285 (418)
T ss_pred HHHHHHHHHHhc-CCceEEEeCCCHHHHHHHHHHcCCCHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHcCCEEEECC
Confidence 678888899999 999999996544333 2344444433334 455999888999999999999999887
Q ss_pred cccc-c--chHHHHHHHHhCCCCcEEEecCCCC
Q 025333 123 FLMS-M--KAQKAKKMLKVVPSERILLETDAPD 152 (254)
Q Consensus 123 ~~~~-~--~~~~~~~~l~~ip~driLlETD~P~ 152 (254)
.... . ....++++++.- =++-+.||++.
T Consensus 286 ~sn~~lg~g~~p~~~l~~~G--v~v~lGtD~~~ 316 (418)
T cd01313 286 TTEANLGDGIFPAAALLAAG--GRIGIGSDSNA 316 (418)
T ss_pred CchhhccCCCCCHHHHHHCC--CcEEEecCCCC
Confidence 4211 0 112245555542 38889999764
No 66
>PRK06886 hypothetical protein; Validated
Probab=96.68 E-value=0.061 Score=49.91 Aligned_cols=159 Identities=16% Similarity=0.132 Sum_probs=93.5
Q ss_pred ceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccch---HHHHHHHHH----hcCCCCCcEEEEeCCC
Q 025333 31 AAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRA---FGDLLEIMK----SVGPFPDGVIIHSYLG 103 (254)
Q Consensus 31 ~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a---~~~~l~il~----~~~~~~~~~IiH~fsg 103 (254)
+-.|| |+++... .+.+.-.+.+.+.+++|+++|+||-+|+-.. ....++.+. +.|......+.||+.-
T Consensus 143 advvG--GiP~~~~---~~~~~~~e~l~~~~~lA~~~g~~Id~Hlde~~~~~~~~le~l~~~~~~~Gl~grV~~sH~~~L 217 (329)
T PRK06886 143 VDMIG--GLPYRDE---LDYGRGLEAMDILLDTAKSLGKMVHVHVDQFNTPKEKETEQLCDKTIEHGMQGRVVAIHGISI 217 (329)
T ss_pred CCEEe--CccCCcC---CCCCCCHHHHHHHHHHHHHcCCCeEEeECCCCchhHHHHHHHHHHHHHcCCCCCEEEEEeccc
Confidence 34565 4566521 1223456788999999999999999999863 222333332 5554332234498875
Q ss_pred CHH-------HHHHHHHCCcEEeeccccc---------c---cchHHHHHHHHhCCCCcEEEecCCCCCCchhhhhcccc
Q 025333 104 SAE-------MVPELSKLGAYFSFSGFLM---------S---MKAQKAKKMLKVVPSERILLETDAPDALPKAELNSLFL 164 (254)
Q Consensus 104 ~~e-------~~~~~l~~G~y~s~~~~~~---------~---~~~~~~~~~l~~ip~driLlETD~P~~~p~~~~~~~~~ 164 (254)
+.. .++.+.+.|+.+..++... + .....+.++.+.- =++-+.||....+-.|.
T Consensus 218 ~~~~~~~~~~~i~~La~agi~Vv~~P~snl~l~~~~~~~p~~rGv~pv~eL~~aG--V~V~lGtDnv~D~~~p~------ 289 (329)
T PRK06886 218 GAHSKEYRYRLYQKMREADMMVIACPMAWIDSNRKEDLMPFHNALTPADEMIPEG--ITVALGTDNICDYMVPL------ 289 (329)
T ss_pred cCcChhhHHHHHHHHHHcCCeEEECchhhhhhccccccCcCCCCCCCHHHHHHCC--CeEEEecCCCcccCCCC------
Confidence 433 3566667899888776310 0 0011234555542 48889999854321110
Q ss_pred cCCCCCCcccccccccCCCCCCCCCccccccCCCCCCCCCCCCCCcccHHHHHHHHHhccC-CCHHHHHHHHHHHHHHhc
Q 025333 165 VDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLD-MTKEELAELSYRNAIRLF 243 (254)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~neP~~l~~v~~~lA~i~~-~~~eev~~~~~~N~~~~f 243 (254)
| ..++.+.+..++.+.+ .+.+++.+.++.|..+.+
T Consensus 290 -------------------------------g-------------~~Dmle~~~l~~~~~~~~~~~~~l~maT~~gAraL 325 (329)
T PRK06886 290 -------------------------------C-------------EGDMWQELSLLAAGCRFYDLDEMVNIASINGRKVL 325 (329)
T ss_pred -------------------------------C-------------CCCHHHHHHHHHHHcCCCCHHHHHHHHhhhHHHHh
Confidence 1 1234444444443322 368899999999999999
Q ss_pred CCC
Q 025333 244 SYE 246 (254)
Q Consensus 244 ~~~ 246 (254)
+++
T Consensus 326 gl~ 328 (329)
T PRK06886 326 GLE 328 (329)
T ss_pred CCC
Confidence 875
No 67
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=96.64 E-value=0.037 Score=50.92 Aligned_cols=131 Identities=11% Similarity=0.160 Sum_probs=85.8
Q ss_pred HHHHHHHhcCCceEE-eccchHHHHHHHHHhcCCCCCcEEE-EeC---------CCCHHHHHHHHHCCcEEeeccccccc
Q 025333 59 QQLELAKELKRPASI-HCVRAFGDLLEIMKSVGPFPDGVII-HSY---------LGSAEMVPELSKLGAYFSFSGFLMSM 127 (254)
Q Consensus 59 ~ql~lA~~~~lPvil-H~~~a~~~~l~il~~~~~~~~~~Ii-H~f---------sg~~e~~~~~l~~G~y~s~~~~~~~~ 127 (254)
+.++...++|..|=+ |+-. ..+.++++-.. ..+|+ |+- +-+.++++.+.+.|..++++....+.
T Consensus 158 ~vv~~mn~lGmiiDvSH~s~--~~~~dv~~~s~---~PviaSHsn~ral~~h~RNltD~~i~~ia~~GGvigi~~~~~fl 232 (309)
T cd01301 158 ELVREMNRLGIIIDLSHLSE--RTFWDVLDISN---APVIASHSNARALCDHPRNLTDAQLKAIAETGGVIGVNFYPAFL 232 (309)
T ss_pred HHHHHHHHcCCEEEcCCCCH--HHHHHHHHhcC---CCEEEeccChHHhcCCCCCCCHHHHHHHHHcCCEEEEeeeHHHh
Confidence 344555667766543 5554 22334444331 12444 633 34678889999999999988653332
Q ss_pred c------hHH----HHHHHHhCCCCcEEEecCCCCCCchhhhhcccccCCCCCCcccccccccCCCCCCCCCccccccCC
Q 025333 128 K------AQK----AKKMLKVVPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASK 197 (254)
Q Consensus 128 ~------~~~----~~~~l~~ip~driLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 197 (254)
+ .+. +.-+++.++.|++-+.||+......|
T Consensus 233 ~~~~~~~~~~~~~hi~~i~~l~G~dhVgiGsDfdg~~~~~---------------------------------------- 272 (309)
T cd01301 233 SPGADATLDDVVRHIDYIVDLIGIDHVGLGSDFDGIGGTP---------------------------------------- 272 (309)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEECcccCCCCCCc----------------------------------------
Confidence 1 122 33455568999999999996542111
Q ss_pred CCCCCCCCCCCCcccHHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 025333 198 DSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRL 242 (254)
Q Consensus 198 ~~~~~~~~~~neP~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~ 242 (254)
.....+..++.+.+.+.+ +|.+.+++..+++.|+.|+
T Consensus 273 -------~gl~~~~~~~~l~~~L~~-rG~s~~~i~~i~g~N~lRv 309 (309)
T cd01301 273 -------GGLEDVSDLPNLTAELLE-RGYSEEEIEKIAGGNFLRV 309 (309)
T ss_pred -------cccCCHHHHHHHHHHHHH-cCCCHHHHHHHHhhchhcC
Confidence 124457788999998866 8999999999999999885
No 68
>TIGR01224 hutI imidazolonepropionase. This enzyme catalyzes the third step in histidine degradation.
Probab=96.61 E-value=0.034 Score=51.61 Aligned_cols=135 Identities=17% Similarity=0.125 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHhcCCceEEeccchH-HHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCcEEeecccccc-c--chH
Q 025333 55 GVFRQQLELAKELKRPASIHCVRAF-GDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMS-M--KAQ 130 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~a~-~~~l~il~~~~~~~~~~IiH~fsg~~e~~~~~l~~G~y~s~~~~~~~-~--~~~ 130 (254)
+.|++.+++|.++|+||.+|+-... ...++.+.+.+. . .+-|+..-+.+.++.+.+.|..+++.+.... . ...
T Consensus 197 ~~~~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~g~--~-~~~H~~~~~~~~l~~la~~g~~~~~~P~~~~~l~~~~~ 273 (377)
T TIGR01224 197 EQSRRILQAAQEAGLPVKLHAEELSNLGGAELAAKLGA--V-SADHLEHASDAGIKALAEAGTVAVLLPGTTFYLRETYP 273 (377)
T ss_pred HHHHHHHHHHHHCCCCEEEEecCCCCCCHHHHHHHcCC--C-ccHHHhcCCHHHHHHHHhcCCEEEECchHHHhcCCcCc
Confidence 3588999999999999999996421 112333444442 2 2459888889999999999999988764211 0 112
Q ss_pred HHHHHHHhCCCCcEEEecCCCCCCchhhhhcccccCCCCCCcccccccccCCCCCCCCCccccccCCCCCCCCCCCCCCc
Q 025333 131 KAKKMLKVVPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHP 210 (254)
Q Consensus 131 ~~~~~l~~ip~driLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~neP 210 (254)
.++++++. + =++.+.||++. ...+.
T Consensus 274 p~~~l~~~-G-v~v~lgTD~~~-~~~~~---------------------------------------------------- 298 (377)
T TIGR01224 274 PARQLIDY-G-VPVALATDLNP-GSSPT---------------------------------------------------- 298 (377)
T ss_pred cHHHHHHC-C-CCEEEECCCCC-CCChh----------------------------------------------------
Confidence 24455543 3 37899999621 01100
Q ss_pred ccHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCCC
Q 025333 211 ANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEG 247 (254)
Q Consensus 211 ~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~~ 247 (254)
..+...+...+...+++.+++.+..+.|..+++++++
T Consensus 299 ~~~~~~~~~~~~~~~ls~~eal~~~T~~~A~~lg~~~ 335 (377)
T TIGR01224 299 LSMQLIMSLACRLMKMTPEEALHAATVNAAYALGLGE 335 (377)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCC
Confidence 1233444444556789999999999999999999864
No 69
>PF07969 Amidohydro_3: Amidohydrolase family; InterPro: IPR013108 Amidohydrolases are a diverse superfamily of enzymes which catalyse the hydrolysis of amide or amine bonds in a large number of different substrates including urea, cytosine, AMP, formylmethanofuran, etc [, ]. Also included in this superfamily are the phopshotriesterase enzymes, which hydrolyse P-O bonds. Members participate in a large number of processes including nucleotide metabolism, detoxification and neuronal development. They use a variety of divalent metal cofactors for catalysis: for example adenosine deaminase binds a single zinc ion, phopsphotriesterase binds two, while urease binds nickel. It has been postulated that since some of these proteins, such as those some of those involved in neuronal devlopment, appear to have lost their metal-binding centres, their function may simply be to bind, but not hydrolyse, their target molecules. This entry represents a subset of amidohydrolase domains that participate in different functions including cytosine degradation, atrazine degradation and other metabolic processes. The structure of the domain from Escherichia coli has been studied, and like other amidohydrolases it forms a classical alpha-beta TIM-barrel fold []. The active site is located in the mouth of the enzyme barrel and contains a bound iron ion that coordinates a hydroxyl nucleophile. Substrate binding involves a significant conformational change that sequesters the reaction complex from solvent.; PDB: 4F0R_A 4F0S_A 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A ....
Probab=96.60 E-value=0.065 Score=49.96 Aligned_cols=136 Identities=20% Similarity=0.268 Sum_probs=92.1
Q ss_pred HHHHHHHHHhcCCceEEeccc--hHHHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCcEEeeccccc---------
Q 025333 57 FRQQLELAKELKRPASIHCVR--AFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLM--------- 125 (254)
Q Consensus 57 f~~ql~lA~~~~lPvilH~~~--a~~~~l~il~~~~~~~~~~IiH~fsg~~e~~~~~l~~G~y~s~~~~~~--------- 125 (254)
+.+.++.|.+.|++|.+|+.. +...+++.++..... ..+.|+.-...+...++.+.|+.+++.+...
T Consensus 227 l~~~v~~a~~~g~~v~vHa~gd~a~~~~l~a~~~~~~~--~~i~h~~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~~~~~ 304 (404)
T PF07969_consen 227 LEELVRAAREAGLQVAVHAIGDRAIDEALDAIEAARAR--GRIEHAELIDPDDIERMAELGVTASVQPHFLFSWGGEWYE 304 (404)
T ss_dssp HHHHHHHHHHCT-EEEEEEESHHHHHHHHHHHHHHTCC--HEEEEHCBCCHHHHHHHHHHTTEEEECCTHHHHETEETHH
T ss_pred HHHHHHHHHhcCCeeEEEEcCCchHHhHHHHHHhhccc--ceeeccccCCHHHHHHHHHhCCccccChhHhhhccchhhh
Confidence 799999999999999999965 567788888877532 1577988889999999999999999987210
Q ss_pred -------ccchHHHHHHHHhCCCCcEEEecCCCCCCchhhhhcccccCCCCCCcccccccccCCCCCCCCCccccccCCC
Q 025333 126 -------SMKAQKAKKMLKVVPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKD 198 (254)
Q Consensus 126 -------~~~~~~~~~~l~~ip~driLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 198 (254)
......++.+++.- =++.+.||+|...+.|..
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~G--v~v~~gsD~p~~~~~P~~--------------------------------------- 343 (404)
T PF07969_consen 305 ERLGPERARRIYPIRSLLDAG--VRVALGSDAPVSPPNPFR--------------------------------------- 343 (404)
T ss_dssp HHHHHHCGGGBTHHHHHHHCT--TEEEE--TTTTSSCCHHH---------------------------------------
T ss_pred hhhhhHHHHHHhHHHHHHhcc--CceecCcCCcccccCcch---------------------------------------
Confidence 00112234444442 489999999975554431
Q ss_pred CCCCCCCCCCCcccHHH-HHHHHHh---------ccCCCHHHHHHHHHHHHHHhcCCCCC
Q 025333 199 SSTLPKETLNHPANIHN-VLDYVAS---------LLDMTKEELAELSYRNAIRLFSYEGS 248 (254)
Q Consensus 199 ~~~~~~~~~neP~~l~~-v~~~lA~---------i~~~~~eev~~~~~~N~~~~f~~~~~ 248 (254)
.+.. +...... -..+|+++..+..+.|..+.+++++.
T Consensus 344 -------------~~~~~~~~~~~~~~~~~~~~~~~~ls~~eAl~~~T~~~A~~~g~~~~ 390 (404)
T PF07969_consen 344 -------------GIWAAVTRQMAGERSGPVLGPEQRLSLEEALRAYTSNPARALGLEDR 390 (404)
T ss_dssp -------------HHHHHHHHHHCHHTHHHCCGGTGSSHHHHHHHHTTHHHHHHTT-TTT
T ss_pred -------------hhhhhhccccccccccccccccccCCHHHHHHHHhHHHHHHcCCCCC
Confidence 0000 1111111 06799999999999999999999875
No 70
>PRK09061 D-glutamate deacylase; Validated
Probab=96.57 E-value=0.15 Score=49.98 Aligned_cols=77 Identities=21% Similarity=0.265 Sum_probs=51.6
Q ss_pred ChhHHHHHHHHhh---cCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccch-----------HH
Q 025333 15 TPNWFSTLKEFFE---ITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRA-----------FG 80 (254)
Q Consensus 15 ~~~~l~~l~~ll~---~~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a-----------~~ 80 (254)
+.++++++.++++ +..+.+|+ +|++|... .-...+.+.++.|+++|.|+.+|+++. ..
T Consensus 164 t~~el~~m~~ll~~al~~Ga~gis-~~~~y~p~-------~~~~eL~~l~~~A~~~g~~v~~H~e~~~~~~~~~e~~av~ 235 (509)
T PRK09061 164 TPAELAEILELLEQGLDEGALGIG-IGAGYAPG-------TGHKEYLELARLAARAGVPTYTHVRYLSNVDPRSSVDAYQ 235 (509)
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEe-cCCccCCC-------CCHHHHHHHHHHHHHcCCEEEEEecCcccCCchhHHHHHH
Confidence 4567888888876 34466665 46776531 133558888899999999999999963 14
Q ss_pred HHHHHHHhcCCCCCcEEE-EeCC
Q 025333 81 DLLEIMKSVGPFPDGVII-HSYL 102 (254)
Q Consensus 81 ~~l~il~~~~~~~~~~Ii-H~fs 102 (254)
+++++.++.+. ++.+ |.-+
T Consensus 236 ~~i~lA~~~G~---rv~IsHlss 255 (509)
T PRK09061 236 ELIAAAAETGA---HMHICHVNS 255 (509)
T ss_pred HHHHHHHHhCC---CEEEEeecc
Confidence 45566666653 3544 7654
No 71
>PRK06846 putative deaminase; Validated
Probab=96.53 E-value=0.18 Score=47.68 Aligned_cols=97 Identities=14% Similarity=0.072 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHhcCCceEEeccch-------HHHHHHHHHhcCCCCCcEEEEeCC---CCHHHHH----HHHHCCcEE
Q 025333 53 QVGVFRQQLELAKELKRPASIHCVRA-------FGDLLEIMKSVGPFPDGVIIHSYL---GSAEMVP----ELSKLGAYF 118 (254)
Q Consensus 53 Q~~vf~~ql~lA~~~~lPvilH~~~a-------~~~~l~il~~~~~~~~~~IiH~fs---g~~e~~~----~~l~~G~y~ 118 (254)
..+.|++.+++|+++|+|+.+|.... .+.+++.+.+.+......+.||.. .+.+.+. .+.+.|+.+
T Consensus 204 ~~~~l~~~~~lA~~~g~~v~~Hv~e~~~~~~~~~~~~~~~~~~~gl~~~v~~~H~~~l~~~~~~e~~~li~~la~~g~~v 283 (410)
T PRK06846 204 IEKSLDTMFQIAVDFNKGVDIHLHDTGPLGVATIKYLVETTEEAQWKGKVTISHAFALGDLNEEEVEELAERLAAQGISI 283 (410)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEECCCCChhHHHHHHHHHHHHHhCCCCCEEEEecchhhcCCHHHHHHHHHHHHHcCCeE
Confidence 34889999999999999999998852 245678888877544323449864 2455554 456679888
Q ss_pred eecccccccchHHHHHHHHhCCCCcEEEecCCCC
Q 025333 119 SFSGFLMSMKAQKAKKMLKVVPSERILLETDAPD 152 (254)
Q Consensus 119 s~~~~~~~~~~~~~~~~l~~ip~driLlETD~P~ 152 (254)
+.+..+. ..-..++++.+. + =++-+.||+|.
T Consensus 284 ~~~~~~~-~g~~p~~~l~~~-G-v~v~lGtD~~~ 314 (410)
T PRK06846 284 TSTVPIG-RLHMPIPLLHDK-G-VKVSLGTDSVI 314 (410)
T ss_pred EEeCCCC-CCCCCHHHHHhC-C-CeEEEecCCCC
Confidence 7543211 111224455544 2 48999999875
No 72
>PRK06151 N-ethylammeline chlorohydrolase; Provisional
Probab=96.51 E-value=0.073 Score=51.68 Aligned_cols=95 Identities=21% Similarity=0.298 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHhcCCceEEeccchHHH-----------HHHHHHhcCCCCCcE-EEEeCCCCH---------HHHHHHH
Q 025333 54 VGVFRQQLELAKELKRPASIHCVRAFGD-----------LLEIMKSVGPFPDGV-IIHSYLGSA---------EMVPELS 112 (254)
Q Consensus 54 ~~vf~~ql~lA~~~~lPvilH~~~a~~~-----------~l~il~~~~~~~~~~-IiH~fsg~~---------e~~~~~l 112 (254)
.+.+.+.+++|.++|+||.+|+-....+ .++.+.+.+....+. +.||+.-+. +.++.+.
T Consensus 220 ~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~~~~~g~l~~r~~l~H~~~l~~~~~~~~~~~~~~~~la 299 (488)
T PRK06151 220 VDLLRRTAAAARELGCPVRLHCAQGVLEVETVRRLHGTTPLEWLADVGLLGPRLLIPHATYISGSPRLNYSGGDDLALLA 299 (488)
T ss_pred HHHHHHHHHHHHHCCCcEEEEECCchHHHHHHHHHcCCCHHHHHHHcCCCCCCcEEEEEEEcCCccccccCCHHHHHHHH
Confidence 3678899999999999999999643322 234455555322334 559887777 8999999
Q ss_pred HCCcEEeecccccc-c--chHHHHHHHHhCCCCcEEEecCC
Q 025333 113 KLGAYFSFSGFLMS-M--KAQKAKKMLKVVPSERILLETDA 150 (254)
Q Consensus 113 ~~G~y~s~~~~~~~-~--~~~~~~~~l~~ip~driLlETD~ 150 (254)
+.|++++..+.... . ...-++++++. + =++-+.||+
T Consensus 300 ~~g~~v~~~P~~~~~~g~~~~p~~~l~~~-G-v~v~lGtD~ 338 (488)
T PRK06151 300 EHGVSIVHCPLVSARHGSALNSFDRYREA-G-INLALGTDT 338 (488)
T ss_pred hcCCEEEECchhhhhhccccccHHHHHHC-C-CcEEEECCC
Confidence 99999987753110 0 00113444443 2 369999997
No 73
>PRK08418 chlorohydrolase; Provisional
Probab=96.35 E-value=0.18 Score=47.82 Aligned_cols=94 Identities=18% Similarity=0.148 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhcCCceEEeccchHHHHH---------------------------HHHHhcCCCCCcEEEEeCCCCHHH
Q 025333 55 GVFRQQLELAKELKRPASIHCVRAFGDLL---------------------------EIMKSVGPFPDGVIIHSYLGSAEM 107 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~a~~~~l---------------------------~il~~~~~~~~~~IiH~fsg~~e~ 107 (254)
+.+++..++|+++|+|+.+|.-....+.- +.+...+. +..++.||-.-+.+.
T Consensus 190 e~l~~~~~~A~~~~~~i~~H~~E~~~E~~~~~~~~G~~~~~~~~~~~~~~~~~~pv~~l~~~g~-~~~~~~H~~~~~~~d 268 (408)
T PRK08418 190 ILAKKALQLAKKENLLVSTHFLESKAEREWLEESKGWFKKFFEKFLKEPKPLYTPKEFLELFKG-LRTLFTHCVYASEEE 268 (408)
T ss_pred HHHHHHHHHHHHcCCeEEEEecCCHHHHHHHHhccCchhhhhhhhcccccccCCHHHHHHHhCC-CCeEEEecccCCHHH
Confidence 68999999999999999999997554432 33333332 233566988888999
Q ss_pred HHHHHHCCcEEeecccccc-cc--hHHHHHHHHhCCCCcEEEecCCC
Q 025333 108 VPELSKLGAYFSFSGFLMS-MK--AQKAKKMLKVVPSERILLETDAP 151 (254)
Q Consensus 108 ~~~~l~~G~y~s~~~~~~~-~~--~~~~~~~l~~ip~driLlETD~P 151 (254)
++.+.+.|..++..+.... +. ...++++++.- =++-+.||++
T Consensus 269 i~~la~~g~~v~~cP~sn~~lg~g~~p~~~~~~~G--i~v~lGtD~~ 313 (408)
T PRK08418 269 LEKIKSKNASITHCPFSNRLLSNKALDLEKAKKAG--INYSIATDGL 313 (408)
T ss_pred HHHHHHcCCcEEECHhHHHHhcCCCccHHHHHhCC--CeEEEeCCCC
Confidence 9999999999988764210 00 11234555442 4899999974
No 74
>cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor. FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen.
Probab=96.22 E-value=0.21 Score=49.27 Aligned_cols=23 Identities=13% Similarity=0.208 Sum_probs=21.4
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCC
Q 025333 224 LDMTKEELAELSYRNAIRLFSYE 246 (254)
Q Consensus 224 ~~~~~eev~~~~~~N~~~~f~~~ 246 (254)
|.++.+++++.++.|..++|+++
T Consensus 425 reLSLeei~~mtT~nPAKiLGL~ 447 (541)
T cd01304 425 REYSLYEIAIMTRAGPAKLLGLS 447 (541)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCC
Confidence 67899999999999999999995
No 75
>PTZ00124 adenosine deaminase; Provisional
Probab=96.21 E-value=0.81 Score=43.07 Aligned_cols=128 Identities=13% Similarity=0.233 Sum_probs=85.9
Q ss_pred HHHHHHHHHHhcCCceEEeccch--H---HHHHHHHHhcCCCCCcEEEEeCC--CCHHHHHHHHHCCcEEeecccccc--
Q 025333 56 VFRQQLELAKELKRPASIHCVRA--F---GDLLEIMKSVGPFPDGVIIHSYL--GSAEMVPELSKLGAYFSFSGFLMS-- 126 (254)
Q Consensus 56 vf~~ql~lA~~~~lPvilH~~~a--~---~~~l~il~~~~~~~~~~IiH~fs--g~~e~~~~~l~~G~y~s~~~~~~~-- 126 (254)
-|...++.|++.|+++.+|+... . .++.+.+...+. .| |-|++. .+++.++.+.+.|+-+-+-+.-..
T Consensus 207 ~f~~~f~~Ar~~Gl~~t~HaGE~~~~~~~~~v~~ai~~l~~--~R-IGHG~~~~~d~~l~~~l~~~~I~lEvCPtSN~~~ 283 (362)
T PTZ00124 207 PFKDIFDYVREAGVNLTVHAGEDVTLPNLNTLYSAIQVLKV--KR-IGHGIRVAESQELIDMVKEKDILLEVCPISNVLL 283 (362)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCCCCcchhHHHHHHHhCC--Cc-cccccccCCCHHHHHHHHHcCCeEEECCcchhhh
Confidence 48889999999999999999863 1 345566665554 33 668876 468888898898887776653110
Q ss_pred -----cchHHHHHHHHhCCCCcEEEecCCCCCCchhhhhcccccCCCCCCcccccccccCCCCCCCCCccccccCCCCCC
Q 025333 127 -----MKAQKAKKMLKVVPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSST 201 (254)
Q Consensus 127 -----~~~~~~~~~l~~ip~driLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 201 (254)
...--++.+++. + =.+.+.||.|-..-
T Consensus 284 ~~v~~~~~HPi~~l~~~-G-v~v~InTDDp~~~~---------------------------------------------- 315 (362)
T PTZ00124 284 NNAKSMDTHPIRKLYDA-G-VKVSVNSDDPGMFL---------------------------------------------- 315 (362)
T ss_pred hcCCchhhHHHHHHHHC-C-CcEEEeCCCccccC----------------------------------------------
Confidence 111124455554 2 27899999986421
Q ss_pred CCCCCCCCcccHHHHHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 025333 202 LPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLF 243 (254)
Q Consensus 202 ~~~~~~neP~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f 243 (254)
.++.+=+..+++..|++.+++.+...+=...-|
T Consensus 316 ---------t~l~~Ey~~~~~~~gls~~~l~~l~~nai~asF 348 (362)
T PTZ00124 316 ---------TNINDDYEELYTHLNFTLADFMKMNEWALEKSF 348 (362)
T ss_pred ---------CChhHHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 134455677888899999999988644444444
No 76
>COG1001 AdeC Adenine deaminase [Nucleotide transport and metabolism]
Probab=96.18 E-value=0.19 Score=49.76 Aligned_cols=163 Identities=17% Similarity=0.206 Sum_probs=114.4
Q ss_pred HHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccchHHHHHHHHHhcCCCCCcEEE
Q 025333 19 FSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVII 98 (254)
Q Consensus 19 l~~l~~ll~~~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a~~~~l~il~~~~~~~~~~Ii 98 (254)
.+.+++++..++++++||+ .||-.. .+.+..+ -.-|+.++++++||-=|++...+.-+.-....|... -
T Consensus 160 a~~i~e~~~~p~Vigl~E~-Mn~pgV-----i~~D~~~-l~kl~a~~~~~k~VdGHapgl~g~~Ln~Y~aaGi~t----D 228 (584)
T COG1001 160 AEDIKELLEHPEVIGLGEM-MNFPGV-----IEGDPDM-LAKLEAARKAGKPVDGHAPGLSGKELNAYIAAGIST----D 228 (584)
T ss_pred HHHHHHHhhCCCccchhhh-cCCchh-----ccCCHHH-HHHHHHHHHcCCeecccCCCCChHHHHHHHhcCCCc----C
Confidence 6788899999999999998 454322 1223233 345788999999999999997766665555555422 2
Q ss_pred E-eCCCCHHHHHHHHHCCcEEeec-ccccccchHHHHHHHHhCCCCcEEEecCCCCCCchhhhhcccccCCCCCCccccc
Q 025333 99 H-SYLGSAEMVPELSKLGAYFSFS-GFLMSMKAQKAKKMLKVVPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELS 176 (254)
Q Consensus 99 H-~fsg~~e~~~~~l~~G~y~s~~-~~~~~~~~~~~~~~l~~ip~driLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~ 176 (254)
| |+ +.|++.+=+++|+|+.+= |.. ..+-..+..++.+.+..|+++=||.-. |.-.
T Consensus 229 HE~~--t~EEa~~klr~Gm~i~iReGS~-a~dl~~l~~~i~e~~~~~~~lcTDD~~--p~dl------------------ 285 (584)
T COG1001 229 HEST--TAEEALEKLRLGMKIMIREGSA-AKDLAALLPAITELGSRRVMLCTDDRH--PDDL------------------ 285 (584)
T ss_pred cccC--CHHHHHHHHhCCcEEEEEcCch-hhhHHHHHHHHhhcCCceEEEECCCCC--hhHh------------------
Confidence 6 44 567777778899999987 543 223355667778888899999999743 1100
Q ss_pred ccccCCCCCCCCCccccccCCCCCCCCCCCCCCcccHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCCC
Q 025333 177 AKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEG 247 (254)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~neP~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~~ 247 (254)
-+.| .+-++++.. --.|+++.+..+..+-|+.+-|++.+
T Consensus 286 ----------------~~eG---------------hld~~vR~A-i~~Gv~p~~a~qmAtiN~A~~~gl~~ 324 (584)
T COG1001 286 ----------------LEEG---------------HLDRLVRRA-IEEGVDPLDAYQMATINPAEHYGLDD 324 (584)
T ss_pred ----------------hhcC---------------CHHHHHHHH-HHcCCCHHHHHHHHhcCHHHHcCCcc
Confidence 0013 455566543 34699999999999999999999974
No 77
>PRK09230 cytosine deaminase; Provisional
Probab=96.11 E-value=0.16 Score=48.63 Aligned_cols=98 Identities=15% Similarity=0.190 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHhcCCceEEeccch-------HHHHHHHHHhcCCCCCcEEEEeCCC-------CHHHHHHHHHCCcEE
Q 025333 53 QVGVFRQQLELAKELKRPASIHCVRA-------FGDLLEIMKSVGPFPDGVIIHSYLG-------SAEMVPELSKLGAYF 118 (254)
Q Consensus 53 Q~~vf~~ql~lA~~~~lPvilH~~~a-------~~~~l~il~~~~~~~~~~IiH~fsg-------~~e~~~~~l~~G~y~ 118 (254)
-.+.|+..+++|+++|+|+.+|+-.. ...+.+++.+.+..+.-.+.||..- +.+.++.+.+.|+-+
T Consensus 193 ~~e~l~~~~~~A~~~g~~~~~H~~E~~~~~~~~~~~~~~~~~~~gl~~~v~~~H~~~l~~~~~~~~~~~~~~La~~gv~v 272 (426)
T PRK09230 193 GVESLHKAFALAQKYDRLIDVHCDEIDDEQSRFVETVAALAHREGMGARVTASHTTAMHSYNGAYTSRLFRLLKMSGINF 272 (426)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEECCCCCcchHHHHHHHHHHHHhCCCCCEEEEecCchhcCCHHHHHHHHHHHHHcCCeE
Confidence 46889999999999999999998752 3346778888774332234497765 466778888889888
Q ss_pred eecccccc-cc-----------hHHHHHHHHhCCCCcEEEecCCCC
Q 025333 119 SFSGFLMS-MK-----------AQKAKKMLKVVPSERILLETDAPD 152 (254)
Q Consensus 119 s~~~~~~~-~~-----------~~~~~~~l~~ip~driLlETD~P~ 152 (254)
...+.... +. -..++++++.- =++-+.||.+.
T Consensus 273 v~cP~sn~~l~~~~~~~p~~~g~~pi~~l~~aG--v~V~lGTD~~~ 316 (426)
T PRK09230 273 VANPLVNIHLQGRFDTYPKRRGITRVKEMLEAG--INVCFGHDDVF 316 (426)
T ss_pred EECcchhhhhcCCCCCCCCCCCCcCHHHHHHCC--CeEEEecCCCC
Confidence 77653210 10 01145666552 38999999865
No 78
>PRK14085 imidazolonepropionase; Provisional
Probab=96.10 E-value=0.13 Score=48.07 Aligned_cols=134 Identities=13% Similarity=0.078 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHhcCCceEEeccchH-HHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCcEEeecccccc---cchH
Q 025333 55 GVFRQQLELAKELKRPASIHCVRAF-GDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMS---MKAQ 130 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~a~-~~~l~il~~~~~~~~~~IiH~fsg~~e~~~~~l~~G~y~s~~~~~~~---~~~~ 130 (254)
+.+++.++.|.++|+|+.+|+.... ..-++.+.+.+.. .+.|+..-+.+.++.+.+.|+.+++.+.... ....
T Consensus 207 ~~l~~~~~~a~~~g~~v~~H~~~~~~~~~v~~~~~~g~~---~i~H~~~l~~~~~~~la~~gv~~~~~P~~~~~~~~~~~ 283 (382)
T PRK14085 207 DQSRRVLTAGRAAGLGLRVHGNQLGPGPGVRLAVELGAA---SVDHCTYLTDADVDALAGSGTVATLLPGAEFSTRQPYP 283 (382)
T ss_pred HHHHHHHHHHHHcCCCeEEEeCcccCChHHHHHHHcCCC---cHHHhCCCCHHHHHHHHHcCCEEEECcHHHHhcCCCCc
Confidence 4667888999999999999987521 1223444445531 3569888888999999999998887653210 0112
Q ss_pred HHHHHHHhCCCCcEEEecCCCCCCchhhhhcccccCCCCCCcccccccccCCCCCCCCCccccccCCCCCCCCCCCCCCc
Q 025333 131 KAKKMLKVVPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHP 210 (254)
Q Consensus 131 ~~~~~l~~ip~driLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~neP 210 (254)
.++++++. + =++.+.||++...+..
T Consensus 284 ~~~~l~~a-G-v~v~lgsD~~~~~~~~----------------------------------------------------- 308 (382)
T PRK14085 284 DARRLLDA-G-VTVALASDCNPGSSYT----------------------------------------------------- 308 (382)
T ss_pred hHHHHHHC-C-CcEEEEeCCCCCCChH-----------------------------------------------------
Confidence 35555555 3 4799999985211110
Q ss_pred ccHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCC
Q 025333 211 ANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYE 246 (254)
Q Consensus 211 ~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~ 246 (254)
..+...+.......+++++++.+..+.|..++++++
T Consensus 309 ~~~~~~~~~~~~~~~l~~~~al~~aT~~~A~~lg~~ 344 (382)
T PRK14085 309 SSMPFCVALAVRQMGMTPAEAVWAATAGGARALRRD 344 (382)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC
Confidence 012222223334468999999999999999999986
No 79
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=96.09 E-value=0.37 Score=44.69 Aligned_cols=127 Identities=15% Similarity=0.071 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHhcCCceEEeccchHHHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCcEEeecccc--cc---cch
Q 025333 55 GVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFL--MS---MKA 129 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~a~~~~l~il~~~~~~~~~~IiH~fsg~~e~~~~~l~~G~y~s~~~~~--~~---~~~ 129 (254)
+-+++.++.|+++|+||..|+-...+.+-+..+ .|. .++- |-.+.+.++.+.+.|+++..+... .. ...
T Consensus 163 ~~~~~iv~~A~~~gl~vasH~d~~~~~v~~a~~-~Gv---~~~E--~p~t~e~a~~a~~~G~~vv~gapn~lrg~s~~g~ 236 (325)
T cd01306 163 ANRSELAALARARGIPLASHDDDTPEHVAEAHE-LGV---VISE--FPTTLEAAKAARELGLQTLMGAPNVVRGGSHSGN 236 (325)
T ss_pred HHHHHHHHHHHHCCCcEEEecCCChHHHHHHHH-CCC---eecc--CCCCHHHHHHHHHCCCEEEecCcccccCcccccc
Confidence 446788899999999999999765555444444 342 2222 345788999999999999865310 00 011
Q ss_pred HHHHHHHHhCCCCcEEEecCCCCCCchhhhhcccccCCCCCCcccccccccCCCCCCCCCccccccCCCCCCCCCCCCCC
Q 025333 130 QKAKKMLKVVPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNH 209 (254)
Q Consensus 130 ~~~~~~l~~ip~driLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ne 209 (254)
..++++++. +. .+.+-||+.. +
T Consensus 237 ~~~~~ll~~-Gv-~~al~SD~~p--~------------------------------------------------------ 258 (325)
T cd01306 237 VSARELAAH-GL-LDILSSDYVP--A------------------------------------------------------ 258 (325)
T ss_pred HhHHHHHHC-CC-eEEEEcCCCc--H------------------------------------------------------
Confidence 234555554 32 4688998842 1
Q ss_pred cccHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCCC
Q 025333 210 PANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEG 247 (254)
Q Consensus 210 P~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~~ 247 (254)
..+..++ .++...+++++++.+.++.|..+++++.+
T Consensus 259 -sll~~~~-~la~~~gl~l~eAl~~aT~nPA~~lGl~d 294 (325)
T cd01306 259 -SLLHAAF-RLADLGGWSLPEAVALVSANPARAVGLTD 294 (325)
T ss_pred -hHHHHHH-HHHHHcCCCHHHHHHHHhHHHHHHcCCCC
Confidence 1122233 45556789999999999999999999964
No 80
>PRK07203 putative chlorohydrolase/aminohydrolase; Validated
Probab=96.01 E-value=0.17 Score=48.42 Aligned_cols=95 Identities=19% Similarity=0.134 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHhcCCceEEeccchHHHH-----------HHHHHhcCCCCCcE-EEEeCCCCHHHHHHHHHCCcEEeecc
Q 025333 55 GVFRQQLELAKELKRPASIHCVRAFGDL-----------LEIMKSVGPFPDGV-IIHSYLGSAEMVPELSKLGAYFSFSG 122 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~a~~~~-----------l~il~~~~~~~~~~-IiH~fsg~~e~~~~~l~~G~y~s~~~ 122 (254)
+.+++..++|+++|+||.+|+-....+. ++.+.+.|....+. +.||+..+.+.++.+.+.|..++.++
T Consensus 205 ~~l~~~~~lA~~~g~~i~~H~~E~~~e~~~~~~~~g~~~v~~l~~~Gll~~~~~~~H~~~~~~~d~~~la~~g~~v~~~P 284 (442)
T PRK07203 205 ATLEKCREAVKETGRGYHIHVAEGIYDVSDSHKKYGKDIVERLADFGLLGEKTLAAHCIYLSDEEIDLLKETDTFVVHNP 284 (442)
T ss_pred HHHHHHHHHHHHcCCcEEEEecCChHHHHHHHHHcCCCHHHHHHhCCCCCCCcEEEEeecCCHHHHHHHHhcCCeEEECc
Confidence 6799999999999999999999865443 34555555333344 55999999999999999999998887
Q ss_pred cccc-cc--hHHHHHHHHhCCCCcEEEecCCC
Q 025333 123 FLMS-MK--AQKAKKMLKVVPSERILLETDAP 151 (254)
Q Consensus 123 ~~~~-~~--~~~~~~~l~~ip~driLlETD~P 151 (254)
.... .. ...++++++. + =++-+.||+.
T Consensus 285 ~sn~~l~~g~~p~~~~~~~-G-v~v~lGtD~~ 314 (442)
T PRK07203 285 ESNMGNAVGYNPVLEMIKN-G-ILLGLGTDGY 314 (442)
T ss_pred hhhhhcccCCCCHHHHHHC-C-CeEEEcCCCC
Confidence 4210 00 1224555554 2 2588999974
No 81
>cd01315 L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology). But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid.
Probab=95.97 E-value=0.21 Score=47.57 Aligned_cols=35 Identities=20% Similarity=0.307 Sum_probs=28.1
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCCC
Q 025333 213 IHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEG 247 (254)
Q Consensus 213 l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~~ 247 (254)
++..+..+.+-.+++++++.+.+..|..++|++++
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~t~~pa~~~g~~~ 374 (447)
T cd01315 340 LPVMLTEAVNKRGLSLEDIARLMCENPAKLFGLSH 374 (447)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCCC
Confidence 45555555556789999999999999999999963
No 82
>PRK05985 cytosine deaminase; Provisional
Probab=95.94 E-value=0.14 Score=47.94 Aligned_cols=95 Identities=12% Similarity=0.091 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhcCCceEEeccch-------HHHHHHHHHhcCCCCCcEEEEeCCC---CH----HHHHHHHHCCcEEee
Q 025333 55 GVFRQQLELAKELKRPASIHCVRA-------FGDLLEIMKSVGPFPDGVIIHSYLG---SA----EMVPELSKLGAYFSF 120 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~a-------~~~~l~il~~~~~~~~~~IiH~fsg---~~----e~~~~~l~~G~y~s~ 120 (254)
+.+.+.+++|+++|+|+.+|+... ..++++...+.+......+-|+..- +. +.++.+.+.|+.++.
T Consensus 191 ~~l~~~~~~A~~~g~~i~~Hv~e~~d~~~~~~~~~~e~~~~~g~~~~~~i~H~~~l~~~~~~~~~~~i~~lae~g~~v~~ 270 (391)
T PRK05985 191 GQLDIVFGLAERHGVGIDIHLHEPGELGAFQLERIAARTRALGMQGRVAVSHAFCLGDLPEREVDRLAERLAEAGVAIMT 270 (391)
T ss_pred HHHHHHHHHHHHhCCCcEEeeCCCCCccHHHHHHHHHHHHHhCCCCCEehhhhhhhhcCCHHHHHHHHHHHHHcCCeEEE
Confidence 788899999999999999998752 2233444445553222234486542 23 335666678998887
Q ss_pred cccccccchHHHHHHHHhCCCCcEEEecCCCC
Q 025333 121 SGFLMSMKAQKAKKMLKVVPSERILLETDAPD 152 (254)
Q Consensus 121 ~~~~~~~~~~~~~~~l~~ip~driLlETD~P~ 152 (254)
++.. ...-..++++++.- =++.+.||++-
T Consensus 271 ~~~~-~~~~~~~~~l~~~G--v~v~lGtD~~~ 299 (391)
T PRK05985 271 NAPG-SVPVPPVAALRAAG--VTVFGGNDGIR 299 (391)
T ss_pred eCCC-CCCCCCHHHHHHCC--CeEEEecCCCC
Confidence 6432 11123355666653 38999999864
No 83
>PRK09229 N-formimino-L-glutamate deiminase; Validated
Probab=95.68 E-value=0.41 Score=46.02 Aligned_cols=95 Identities=17% Similarity=0.157 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhcCCceEEeccchHHHHH-----------HHHHhcCCCCCc-EEEEeCCCCHHHHHHHHHCCcEEeecc
Q 025333 55 GVFRQQLELAKELKRPASIHCVRAFGDLL-----------EIMKSVGPFPDG-VIIHSYLGSAEMVPELSKLGAYFSFSG 122 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~a~~~~l-----------~il~~~~~~~~~-~IiH~fsg~~e~~~~~l~~G~y~s~~~ 122 (254)
+.+++..++| ++|+|+.+|+-....++. +.+.+.+....+ .+.||..-+.+.++.+.+.|..+++.+
T Consensus 216 e~l~~~~~~A-~~g~~i~~H~~e~~~e~~~~~~~~g~~~~~~l~~~g~l~~~~~l~H~~~l~~~d~~~la~~g~~v~~~P 294 (456)
T PRK09229 216 DQLAAVLALA-APDGPVHIHIAEQTKEVDDCLAWSGARPVEWLLDHAPVDARWCLVHATHLTDAETARLARSGAVAGLCP 294 (456)
T ss_pred HHHHHHHHHh-cCCCceEEEeCCCHHHHHHHHHHcCCCHHHHHHHcCCCCCCeEEEeeccCCHHHHHHHHHcCCeEEECc
Confidence 6888889999 999999999975443333 334444433334 455999889999999999999999887
Q ss_pred ccc-cc--chHHHHHHHHhCCCCcEEEecCCCC
Q 025333 123 FLM-SM--KAQKAKKMLKVVPSERILLETDAPD 152 (254)
Q Consensus 123 ~~~-~~--~~~~~~~~l~~ip~driLlETD~P~ 152 (254)
... +. ....++++++.- =++-+.||++.
T Consensus 295 ~sn~~lg~g~~p~~~l~~~G--v~v~lGtD~~~ 325 (456)
T PRK09229 295 TTEANLGDGIFPAVDYLAAG--GRFGIGSDSHV 325 (456)
T ss_pred hhhhhhcCCCCCHHHHHHCC--CeEEEecCCCC
Confidence 421 00 011245555542 37999999864
No 84
>PRK15446 phosphonate metabolism protein PhnM; Provisional
Probab=95.63 E-value=0.6 Score=44.01 Aligned_cols=127 Identities=13% Similarity=0.023 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHhcCCceEEeccchHHHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCcEEeeccc--cc---ccch
Q 025333 55 GVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGF--LM---SMKA 129 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~a~~~~l~il~~~~~~~~~~IiH~fsg~~e~~~~~l~~G~y~s~~~~--~~---~~~~ 129 (254)
+-+++.+++|+++|+||..|+-...+.+ +...+.|. .++.| ..+.+.++.+.+.|.++..+.. +. ....
T Consensus 214 e~i~~~v~~A~~~g~~v~sH~~~~~~~i-~~a~~~Gv---~~~e~--~~~~e~~~~~~~~g~~v~~~~p~~~r~~~~~~~ 287 (383)
T PRK15446 214 PNRRAIAALARARGIPLASHDDDTPEHV-AEAHALGV---AIAEF--PTTLEAARAARALGMSVLMGAPNVVRGGSHSGN 287 (383)
T ss_pred HHHHHHHHHHHHCCCceeecCCCCHHHH-HHHHHcCC---ceeeC--CCcHHHHHHHHHCCCEEEeCCcccccCCcccch
Confidence 5567889999999999999995444443 33444443 23434 3467888888888988876431 11 0112
Q ss_pred HHHHHHHHhCCCCcEEEecCCCCCCchhhhhcccccCCCCCCcccccccccCCCCCCCCCccccccCCCCCCCCCCCCCC
Q 025333 130 QKAKKMLKVVPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNH 209 (254)
Q Consensus 130 ~~~~~~l~~ip~driLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ne 209 (254)
..++++++.- -...+-||.. |.
T Consensus 288 ~~~~~~~~~G--v~~~lgSD~~---p~----------------------------------------------------- 309 (383)
T PRK15446 288 VSALDLAAAG--LLDILSSDYY---PA----------------------------------------------------- 309 (383)
T ss_pred HhHHHHHHCC--CcEEEEcCCC---hh-----------------------------------------------------
Confidence 3456666553 2468889972 10
Q ss_pred cccHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCCC
Q 025333 210 PANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEG 247 (254)
Q Consensus 210 P~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~~ 247 (254)
..+.. ...++...+++++++.+..+.|..+++++++
T Consensus 310 -~~~~~-~~~~~~~~gls~~~al~~~T~npA~~lgl~~ 345 (383)
T PRK15446 310 -SLLDA-AFRLADDGGLDLPQAVALVTANPARAAGLDD 345 (383)
T ss_pred -hHHHH-HHHHHHhcCCCHHHHHHHHhHHHHHHcCCCC
Confidence 01112 2234456689999999999999999999953
No 85
>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.
Probab=95.54 E-value=0.54 Score=43.40 Aligned_cols=57 Identities=16% Similarity=0.217 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhcCCceEEeccchHHHHHHHHHhcCCCCCcE-EEEeCC-CCHHHHHHHHHCCcEE
Q 025333 55 GVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGV-IIHSYL-GSAEMVPELSKLGAYF 118 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~a~~~~l~il~~~~~~~~~~-IiH~fs-g~~e~~~~~l~~G~y~ 118 (254)
..+.+.++.+.++|+||++|+. ..+.+.+..+ .++ |.|.-+ .+.+.++.+.+.|+.+
T Consensus 115 ~~l~~~~~~~~~~g~~v~~H~E----r~~~la~~~g---~~l~i~Hiss~~~le~i~~ak~~g~~v 173 (337)
T cd01302 115 GTLMRTFLEIASRGGPVMVHAE----RAAQLAEEAG---ANVHIAHVSSGEALELIKFAKNKGVKV 173 (337)
T ss_pred HHHHHHHHHHHhcCCeEEEeHH----HHHHHHHHhC---CcEEEEeCCCHHHHHHHHHHHHCCCcE
Confidence 3466666777788999999999 5667777665 344 447543 3455666666666544
No 86
>COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=95.48 E-value=0.45 Score=47.09 Aligned_cols=150 Identities=18% Similarity=0.175 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHHhcCCceEEeccc--hHHHHHHHHHhcCC----CCC-cEEEEeCCCCHHHHHHHHHCCcEEeeccc
Q 025333 51 MDQVGVFRQQLELAKELKRPASIHCVR--AFGDLLEIMKSVGP----FPD-GVIIHSYLGSAEMVPELSKLGAYFSFSGF 123 (254)
Q Consensus 51 ~~Q~~vf~~ql~lA~~~~lPvilH~~~--a~~~~l~il~~~~~----~~~-~~IiH~fsg~~e~~~~~l~~G~y~s~~~~ 123 (254)
-...+-|++.++.|.+.|+||.+|+-. +.+.+++.+++... ... --|.|.=.-+++.++++.++|+.+|+.+.
T Consensus 317 l~~~e~l~~~v~~a~~~gl~v~vHAiGD~Av~~~LdafE~~~~~~~~~~~r~rieH~~~v~~~~i~R~~~Lgv~~svQP~ 396 (535)
T COG1574 317 LLTEEELEELVRAADERGLPVAVHAIGDGAVDAALDAFEKARKKNGLKGLRHRIEHAELVSPDQIERFAKLGVIASVQPN 396 (535)
T ss_pred ccCHHHHHHHHHHHHHCCCcEEEEEechHHHHHHHHHHHHHhhhcCCccCCceeeeeeecCHhHHHHHHhcCceEeeccc
Confidence 355678999999999999999999996 67788888876542 111 23679877889999999999999999865
Q ss_pred ccccc----hH-----------HHHHHHHhCCCCcEEEecCCCCCCchhhhhcccccCCCCCCcccccccccCCCCCCCC
Q 025333 124 LMSMK----AQ-----------KAKKMLKVVPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSA 188 (254)
Q Consensus 124 ~~~~~----~~-----------~~~~~l~~ip~driLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (254)
..+.- .+ .++.+++.- =.+-..||+|-+++.|.. +++++=...+
T Consensus 397 f~~~~~~~~~~rlG~~r~~~~~p~~~ll~~G--~~la~gSD~Pv~~~dP~~-~i~~AVtr~~------------------ 455 (535)
T COG1574 397 FLFSDGEWYVDRLGEERASRSYPFRSLLKAG--VPLAGGSDAPVEPYDPWL-GIYAAVTRKT------------------ 455 (535)
T ss_pred cccccchHHHHhhhhhhhhccCcHHHHHHCC--CeEeccCCCCCCCCChHH-HHHHHHcCCC------------------
Confidence 33210 00 123344432 357789999987776653 2222221110
Q ss_pred CccccccCCCCCCCCCCCCCCcccHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCCC
Q 025333 189 SDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEG 247 (254)
Q Consensus 189 ~~~~~~~g~~~~~~~~~~~neP~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~~ 247 (254)
+.+..+.|.. .++.+|..+.-+.|...+.+.++
T Consensus 456 --------------~~g~~~~~~~------------~L~~~eAL~~yT~~~A~a~~~e~ 488 (535)
T COG1574 456 --------------PGGRVLGPEE------------RLTREEALRAYTEGGAYASGAEG 488 (535)
T ss_pred --------------CCCCCCcccc------------ccCHHHHHHHHhhhhHHhhhccc
Confidence 0013333333 57899999999999988877754
No 87
>COG0418 PyrC Dihydroorotase [Nucleotide transport and metabolism]
Probab=95.22 E-value=0.47 Score=43.60 Aligned_cols=150 Identities=13% Similarity=0.171 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHhcCCceEEeccch---------HHH----HHHHHHhcCCCCCcEEE-EeCCCCHHHHHHHHHCC--cE
Q 025333 54 VGVFRQQLELAKELKRPASIHCVRA---------FGD----LLEIMKSVGPFPDGVII-HSYLGSAEMVPELSKLG--AY 117 (254)
Q Consensus 54 ~~vf~~ql~lA~~~~lPvilH~~~a---------~~~----~l~il~~~~~~~~~~Ii-H~fsg~~e~~~~~l~~G--~y 117 (254)
.+-+-..|+..++.|+|+.||..-. ... +++=|++. .+.-++|+ |+-| .+-++.+.+.| ++
T Consensus 117 ~~~~~pvle~Mq~~gmpLlvHGEvt~~~vDifdrE~~Fi~~vl~pl~~~-fP~LKIV~EHiTT--~dav~~v~~~~~nla 193 (344)
T COG0418 117 IEKIYPVLEAMQKIGMPLLVHGEVTDAEVDIFDREAAFIESVLEPLRQR-FPKLKIVLEHITT--KDAVEYVKDANNNLA 193 (344)
T ss_pred HHHHHHHHHHHHHcCCeEEEecccCCccccchhhHHHHHHHHHHHHHhh-CCcceEEEEEecc--HHHHHHHHhcCccee
Confidence 4556667777889999999998742 112 33333222 12357888 7754 33444444443 55
Q ss_pred Eeeccccc----------------c----cchHHHHHHHHh---CCCCcEEEecCCCCCCchhhhhcccccCCCCCCccc
Q 025333 118 FSFSGFLM----------------S----MKAQKAKKMLKV---VPSERILLETDAPDALPKAELNSLFLVDGDPSLPQE 174 (254)
Q Consensus 118 ~s~~~~~~----------------~----~~~~~~~~~l~~---ip~driLlETD~P~~~p~~~~~~~~~~~~~~~~~~~ 174 (254)
-+++..-. | .+..+.|+++.+ -+-.|+++.||+- |.+..
T Consensus 194 ATIT~hHL~~nrnd~l~Ggi~Ph~fClPilKr~~hr~AL~~aa~sg~~kfFlGtDSA---PH~~~--------------- 255 (344)
T COG0418 194 ATITPHHLLLNRNDMLVGGIRPHLFCLPILKRETHREALREAATSGHPKFFLGTDSA---PHARS--------------- 255 (344)
T ss_pred eEeehhheeeehhhhhcCCCCcceeeeccccchhhHHHHHHHHhcCCCcEEecCCCC---CCccc---------------
Confidence 55543200 0 122233333332 2567999999982 32210
Q ss_pred ccccccCCCCCCCCCccccccCCCCCCCCCCCCCCcccHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCCC
Q 025333 175 LSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEG 247 (254)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~neP~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~~ 247 (254)
.|-.+..|.+--|-|..++..++..=+ .=..+-+..-+..|..++|+++-
T Consensus 256 ---------------------~Ke~~cgcAG~fsap~al~~~AevFE~--~naL~~LeaF~S~nGp~fY~lp~ 305 (344)
T COG0418 256 ---------------------RKESACGCAGIFSAPFALPLYAEVFEE--ENALDNLEAFASDNGPKFYGLPR 305 (344)
T ss_pred ---------------------ccccccccccccccHhHHHHHHHHHHH--hcHHHHHHHHHhhcCcceecccC
Confidence 111122444566667777666654422 23578888999999999999974
No 88
>cd00443 ADA_AMPD Adenosine/AMP deaminase. Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway.
Probab=95.08 E-value=2.5 Score=38.47 Aligned_cols=127 Identities=20% Similarity=0.252 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHhcC-CceEEeccch--HHHHHHHHHhcCCCCCcEEEEeCCCC--HHHHHHHHHCCcEEeecccccc--
Q 025333 54 VGVFRQQLELAKELK-RPASIHCVRA--FGDLLEIMKSVGPFPDGVIIHSYLGS--AEMVPELSKLGAYFSFSGFLMS-- 126 (254)
Q Consensus 54 ~~vf~~ql~lA~~~~-lPvilH~~~a--~~~~l~il~~~~~~~~~~IiH~fsg~--~e~~~~~l~~G~y~s~~~~~~~-- 126 (254)
..-|..+++.|++.| +++.+|+... ...+.+.+.-. +. -|-|++.-. ++.++.+.+.|+-+.+.+.-..
T Consensus 152 ~~~f~~~~~~ar~~g~l~~t~HaGE~~~~~~v~~~~~~~---~~-RIgHg~~~~~~p~~~~~l~~~~i~ie~CP~SN~~~ 227 (305)
T cd00443 152 LRDFYSYYEYARRLGLLGLTLHCGETGNREELLQALLLL---PD-RIGHGIFLLKHPELIYLVKLRNIPIEVCPTSNVVL 227 (305)
T ss_pred HHHHHHHHHHHHHcCCcceEEeecCCCChHHHHHHHHhc---cc-eeeceEecCCCHHHHHHHHHcCCEEEECcchhhhh
Confidence 466788899999999 9999999963 34455555432 23 377877644 4888888899988877763110
Q ss_pred -----cchHHHHHHHHhCCCCcEEEecCCCCCCchhhhhcccccCCCCCCcccccccccCCCCCCCCCccccccCCCCCC
Q 025333 127 -----MKAQKAKKMLKVVPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSST 201 (254)
Q Consensus 127 -----~~~~~~~~~l~~ip~driLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 201 (254)
...--++.+++. + =++.+.||.|-...
T Consensus 228 ~~~~~~~~hP~~~~~~~-G-~~v~i~TDd~~~~~---------------------------------------------- 259 (305)
T cd00443 228 GTVQSYEKHPFMRFFKA-G-LPVSLSTDDPGIFG---------------------------------------------- 259 (305)
T ss_pred cCCCChhhChHHHHHHC-C-CeEEEeCCCCcccC----------------------------------------------
Confidence 000113445544 2 38899999984321
Q ss_pred CCCCCCCCcccHHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 025333 202 LPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRL 242 (254)
Q Consensus 202 ~~~~~~neP~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~ 242 (254)
.++.+=+..++...|++.+++.+.. .|+.+.
T Consensus 260 ---------~~l~~E~~~~~~~~~l~~~~l~~l~-~nsi~~ 290 (305)
T cd00443 260 ---------TSLSEEYSLAAKTFGLTFEDLCELN-RNSVLS 290 (305)
T ss_pred ---------CChHHHHHHHHHHcCcCHHHHHHHH-HHHHHH
Confidence 0455556777888899999998877 555544
No 89
>TIGR02022 hutF formiminoglutamate deiminase. In some species, histidine utilization goes via urocanate to glutamate in four step, the last being removal of formamide. This model describes an alternate fourth step, formiminoglutamate hydrolase, which leads to N-formyl-L-glutamate. This product may be acted on by formylglutamate amidohydrolase (TIGR02017) and bypass glutamate as a product during its degradation. Alternatively, removal of formate (by EC 3.5.1.68) would yield glutamate.
Probab=95.03 E-value=0.88 Score=43.79 Aligned_cols=94 Identities=17% Similarity=0.209 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHhcCCceEEeccchHHHH-----------HHHHHhcCCCCCcE-EEEeCCCCHHHHHHHHHCCcEEeecc
Q 025333 55 GVFRQQLELAKELKRPASIHCVRAFGDL-----------LEIMKSVGPFPDGV-IIHSYLGSAEMVPELSKLGAYFSFSG 122 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~a~~~~-----------l~il~~~~~~~~~~-IiH~fsg~~e~~~~~l~~G~y~s~~~ 122 (254)
+.+++..+ |+++|+|+.+|+-....+. ++.+.+.+....+. +.||.--+.+.++.+.+.|..+++.+
T Consensus 216 e~l~~~~~-a~~~g~~v~~H~~e~~~e~~~~~~~~G~~~v~~l~~~g~l~~~~~~~H~~~l~~~d~~~la~~g~~v~~~P 294 (455)
T TIGR02022 216 EQLAAVLQ-ASDRQAPVHIHVAEQQKEVDDCLAWSGRRPVEWLLDHGPVDARWCLVHATHLTDEETALLARSGAVAGLCP 294 (455)
T ss_pred HHHHHHHH-HHhCCCceEEEECCChHHHHHHHHHhCCCHHHHHHHcCCCCCCEEEEEeecCCHHHHHHHHHcCCeEEECh
Confidence 45666667 6789999999997654433 34455555433444 55988888899999999999999887
Q ss_pred cccc-cc--hHHHHHHHHhCCCCcEEEecCCC
Q 025333 123 FLMS-MK--AQKAKKMLKVVPSERILLETDAP 151 (254)
Q Consensus 123 ~~~~-~~--~~~~~~~l~~ip~driLlETD~P 151 (254)
.... .. ...++++++.- =++-+.||++
T Consensus 295 ~sn~~lg~g~~pi~~l~~~G--v~v~lGTD~~ 324 (455)
T TIGR02022 295 TTEANLGDGIFPAVDFVAAG--GRFGIGSDSH 324 (455)
T ss_pred hhhccccCCCCCHHHHHHCC--CeEEEECCCC
Confidence 4211 10 12245555542 4788999974
No 90
>PLN02599 dihydroorotase
Probab=94.91 E-value=0.43 Score=44.89 Aligned_cols=37 Identities=8% Similarity=0.142 Sum_probs=26.8
Q ss_pred CCcccHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCC
Q 025333 208 NHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYE 246 (254)
Q Consensus 208 neP~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~ 246 (254)
+-|..++.....+.+ .| +.+.+.+.+..|..++||++
T Consensus 287 ~~~~~l~~l~~~~~~-~g-~l~~l~~~~S~npA~~~gL~ 323 (364)
T PLN02599 287 SAPVALSLYAKAFEE-AG-ALDKLEAFTSFNGPDFYGLP 323 (364)
T ss_pred cHHHHHHHHHHHHHh-cC-CHHHHHHHHhHHHHHHhCCC
Confidence 334446654444433 35 99999999999999999996
No 91
>TIGR02318 phosphono_phnM phosphonate metabolism protein PhnM. This family consists of proteins from in the PhnM family. PhnM is a a protein associated with phosphonate utilization in a number of bacterial species. In Pseudomonas stutzeri WM88, a protein that is part of a system for the oxidation of phosphites (another form of reduced phosphorous compound) scores between trusted and noise cutoffs.
Probab=94.90 E-value=1 Score=42.44 Aligned_cols=128 Identities=13% Similarity=0.095 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHhcCCceEEeccchHHHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCcEEeeccc-c-ccc---ch
Q 025333 55 GVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGF-L-MSM---KA 129 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~a~~~~l~il~~~~~~~~~~IiH~fsg~~e~~~~~l~~G~y~s~~~~-~-~~~---~~ 129 (254)
+.+.+.+++|+++|+||..|.-...+.+.+.. +.|. .++-|. -+.+.++.+.+.|.++..+.. + ... ..
T Consensus 209 e~i~~~v~~A~~~G~~v~sH~~~~~e~i~~a~-~~Gv---~~~E~~--~t~e~a~~~~~~G~~v~~~~p~~~r~~~~~~~ 282 (376)
T TIGR02318 209 ANRSEIAALARARGIPLASHDDDTPEHVAEAH-DLGV---TISEFP--TTLEAAKEARSLGMQILMGAPNIVRGGSHSGN 282 (376)
T ss_pred HHHHHHHHHHHHCCCeEEEecCCCHHHHHHHH-HCCC---ChhccC--CCHHHHHHHHHcCCeEEECCccccccccccch
Confidence 55678889999999999999965555544433 3342 233454 468889999999999775521 1 110 12
Q ss_pred HHHHHHHHhCCCCcEEEecCCCCCCchhhhhcccccCCCCCCcccccccccCCCCCCCCCccccccCCCCCCCCCCCCCC
Q 025333 130 QKAKKMLKVVPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNH 209 (254)
Q Consensus 130 ~~~~~~l~~ip~driLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ne 209 (254)
..+.++++. +. ...+-||.. |..
T Consensus 283 ~~l~~~~~~-G~-~~~l~SD~~---p~~---------------------------------------------------- 305 (376)
T TIGR02318 283 LSARELAHE-GL-LDVLASDYV---PAS---------------------------------------------------- 305 (376)
T ss_pred HHHHHHHHC-CC-cEEEEcCCC---cHH----------------------------------------------------
Confidence 345566654 22 468899982 110
Q ss_pred cccHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCCC
Q 025333 210 PANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEG 247 (254)
Q Consensus 210 P~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~~ 247 (254)
.+..++.......+++++++.+.++.|..++|++++
T Consensus 306 --~l~~~~~~~~~~~gl~~~~al~~~T~npA~~lgl~~ 341 (376)
T TIGR02318 306 --LLLAAFQLADDVEGIPLPQAVKMVTKNPARAVGLSD 341 (376)
T ss_pred --HHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHcCCCC
Confidence 122222222223589999999999999999999963
No 92
>PRK07369 dihydroorotase; Provisional
Probab=94.87 E-value=0.84 Score=43.61 Aligned_cols=38 Identities=11% Similarity=0.047 Sum_probs=31.5
Q ss_pred cccHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCCC
Q 025333 210 PANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEG 247 (254)
Q Consensus 210 P~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~~ 247 (254)
-..++..++.+.+-.+++.+++.+.+..|..++|+++.
T Consensus 331 e~~l~~~~~~~v~~~~i~l~~~v~~~s~nPA~~lgl~~ 368 (418)
T PRK07369 331 ELALPLLWQNLVETGELSALQLWQALSTNPARCLGQEP 368 (418)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHhHHHHhCCCc
Confidence 34567777666667789999999999999999999964
No 93
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=94.62 E-value=1.4 Score=41.16 Aligned_cols=157 Identities=15% Similarity=0.068 Sum_probs=86.4
Q ss_pred CHHHHHHHHHHHHHHHHhcCCceEE-eccchHH-HHHHHHHhcCCCC-CcEEEEeCCCCHHHHHHHHHCCcEEeeccccc
Q 025333 49 DFMDQVGVFRQQLELAKELKRPASI-HCVRAFG-DLLEIMKSVGPFP-DGVIIHSYLGSAEMVPELSKLGAYFSFSGFLM 125 (254)
Q Consensus 49 ~~~~Q~~vf~~ql~lA~~~~lPvil-H~~~a~~-~~l~il~~~~~~~-~~~IiH~fsg~~e~~~~~l~~G~y~s~~~~~~ 125 (254)
+.........+.+++|+++++|+.+ |+-.... +.+...++.|..- .-+..|+..-+.+.+. ..|.++-+++.+.
T Consensus 166 p~~~e~~~v~~~~~la~~~~~~i~i~h~ss~~~l~~i~~~~~~G~~~~~e~~~h~L~ld~~~~~---~~~~~~k~~Pplr 242 (374)
T cd01317 166 PPEAETIMVARDLELAEATGARVHFQHLSTARSLELIRKAKAKGLPVTAEVTPHHLLLDDEALE---SYDTNAKVNPPLR 242 (374)
T ss_pred CHHHHHHHHHHHHHHHHHhCCcEEEEeCCCHHHHHHHHHHHHCCCCEEEEecHHHHhcCHHHHh---ccCCceEEcCCCC
Confidence 4455667888999999999999998 5443211 3444445444211 1123376554544432 2466666666432
Q ss_pred cc-chHHHHHHHHhCCCCcEEEecCCCCCCchhhhhcccccCCCCCCcccccccccCCCCCCCCCccccccCCCCCCCCC
Q 025333 126 SM-KAQKAKKMLKVVPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPK 204 (254)
Q Consensus 126 ~~-~~~~~~~~l~~ip~driLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 204 (254)
.. ....+.++++.- ....+-||.......... .-+| .... |
T Consensus 243 ~~~~~~~l~~~~~~G--~i~~igsDh~p~~~~~k~-~~~~-~~~~--------------------------G-------- 284 (374)
T cd01317 243 SEEDREALIEALKDG--TIDAIASDHAPHTDEEKD-LPFA-EAPP--------------------------G-------- 284 (374)
T ss_pred CHHHHHHHHHHHhcC--CceEEEcCCCCCCHHHcc-CCHh-hCCC--------------------------c--------
Confidence 21 123344555443 345889998543211000 0000 0000 1
Q ss_pred CCCCCcccHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCCC
Q 025333 205 ETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEG 247 (254)
Q Consensus 205 ~~~neP~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~~ 247 (254)
-..--..++..+..+.+-..++.+++.+.++.|..++|++..
T Consensus 285 -i~g~e~~l~~~~~~~~~~~~~~~~~~~~~~t~npA~~lgl~~ 326 (374)
T cd01317 285 -IIGLETALPLLWTLLVKGGLLTLPDLIRALSTNPAKILGLPP 326 (374)
T ss_pred -HhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCCC
Confidence 111122355556555566678999999999999999999864
No 94
>PRK05451 dihydroorotase; Provisional
Probab=94.32 E-value=0.51 Score=43.86 Aligned_cols=23 Identities=9% Similarity=0.202 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCc
Q 025333 227 TKEELAELSYRNAIRLFSYEGSK 249 (254)
Q Consensus 227 ~~eev~~~~~~N~~~~f~~~~~~ 249 (254)
+++.+.+.+..|..++||+.+.|
T Consensus 285 ~l~~~v~~~s~nPAkifGl~~~K 307 (345)
T PRK05451 285 ALDKLEAFASLNGPDFYGLPRNT 307 (345)
T ss_pred CHHHHHHHHhHHHHHHhCCCCCC
Confidence 99999999999999999996543
No 95
>cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.
Probab=94.30 E-value=2.1 Score=40.02 Aligned_cols=162 Identities=12% Similarity=0.115 Sum_probs=93.1
Q ss_pred HHHHHHHHhcCCceE-EeccchHHHHHHHHHhcCCCCCcEEEEeCCCCHH-------HHHHHHHC-CcEEeecccccccc
Q 025333 58 RQQLELAKELKRPAS-IHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSAE-------MVPELSKL-GAYFSFSGFLMSMK 128 (254)
Q Consensus 58 ~~ql~lA~~~~lPvi-lH~~~a~~~~l~il~~~~~~~~~~IiH~fsg~~e-------~~~~~l~~-G~y~s~~~~~~~~~ 128 (254)
.+.++.|.++|++|. =|+......+.+..+ .|. +.+-|.|++-.. .+..++.. .+|+++-..-....
T Consensus 175 ~~~i~~~~~~gi~v~~GH~~a~~~~~~~a~~-~G~---~~~tH~~n~m~~~~~r~~~~~~a~l~~~~~~~~li~dg~Hv~ 250 (374)
T cd00854 175 LELIRYLVERGIIVSIGHSDATYEQAVAAFE-AGA---THVTHLFNAMSPLHHREPGVVGAALSDDDVYAELIADGIHVH 250 (374)
T ss_pred HHHHHHHHHCCeEEEeeCCcCCHHHHHHHHH-cCC---CeeeECCCCCCCcCCCCCcHHHHhhcCCCCeEEEEcCCCcCC
Confidence 678899999999995 788755566656554 342 346688765322 23333433 46776654333345
Q ss_pred hHHHHHHHHhCCCCcEEEecCCCCCCchhhhhcccccCCCCCCcccccccccCCCCCCCCCccccccCCCCCCCCCCCCC
Q 025333 129 AQKAKKMLKVVPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLN 208 (254)
Q Consensus 129 ~~~~~~~l~~ip~driLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~n 208 (254)
...++-+++..+.+|+++-||+-...-.|. +.+.| .+..-...+. .... . ++...|
T Consensus 251 ~~~~~~~~r~~g~~~~~lvtD~~~~~G~~~-g~y~~-~~~~~~~~~~-~~~~-~--------~g~laG------------ 306 (374)
T cd00854 251 PAAVRLAYRAKGADKIVLVTDAMAAAGLPD-GEYEL-GGQTVTVKDG-VARL-A--------DGTLAG------------ 306 (374)
T ss_pred HHHHHHHHHhcCCCcEEEEeccccccCCCC-CeEEE-CCEEEEEECC-EEEc-C--------CCCeee------------
Confidence 666777777778899999999832111000 00001 1100000000 0000 0 000001
Q ss_pred CcccHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCCC
Q 025333 209 HPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEG 247 (254)
Q Consensus 209 eP~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~~ 247 (254)
-...+.+.+..+.+..+++++++.+..+.|..+++++++
T Consensus 307 ~~~~l~~~~~~l~~~~~l~~~~al~~aT~npA~~lg~~~ 345 (374)
T cd00854 307 STLTMDQAVRNMVKWGGCPLEEAVRMASLNPAKLLGLDD 345 (374)
T ss_pred hHhhHHHHHHHHHHhhCCCHHHHHHHHhHHHHHHcCCCC
Confidence 123466677777677789999999999999999999973
No 96
>TIGR02033 D-hydantoinase D-hydantoinase. This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme.
Probab=94.05 E-value=1.9 Score=41.03 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=27.2
Q ss_pred cHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCCC
Q 025333 212 NIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEG 247 (254)
Q Consensus 212 ~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~~ 247 (254)
.++..+..+..-..++.+++.+.++.|..++|++.+
T Consensus 344 ~l~~l~~~~v~~~~~~~~~~~~~~t~~pa~~~gl~~ 379 (454)
T TIGR02033 344 RMTLLFDEGVATGRITLEKFVELTSTNPAKIFNMYP 379 (454)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHhhHHHHHcCCCC
Confidence 344444444444579999999999999999999953
No 97
>PRK09357 pyrC dihydroorotase; Validated
Probab=93.95 E-value=1.6 Score=41.21 Aligned_cols=36 Identities=14% Similarity=0.088 Sum_probs=27.3
Q ss_pred cHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCCC
Q 025333 212 NIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEG 247 (254)
Q Consensus 212 ~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~~ 247 (254)
.++..+..+..-..++.+++.+.+..|..++|++++
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~A~~~g~~~ 365 (423)
T PRK09357 330 ALSLLYTTLVKTGLLDLEQLLEKMTINPARILGLPA 365 (423)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCCC
Confidence 344444434344579999999999999999999854
No 98
>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.86 E-value=0.97 Score=43.19 Aligned_cols=128 Identities=18% Similarity=0.165 Sum_probs=85.4
Q ss_pred HHHHHHHHhcCCceEEeccchHHHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHH--CCc-EEeeccccc-ccc---hH
Q 025333 58 RQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSK--LGA-YFSFSGFLM-SMK---AQ 130 (254)
Q Consensus 58 ~~ql~lA~~~~lPvilH~~~a~~~~l~il~~~~~~~~~~IiH~fsg~~e~~~~~l~--~G~-y~s~~~~~~-~~~---~~ 130 (254)
++.++-|.+.++||-+|+-... . +.+.-+.+. .-+-|...-+.+.+..+.+ .|. +....+.-. ..+ .+
T Consensus 223 ~~~l~~a~~~g~~v~~HA~~~~-g-~~~A~~~g~---~s~~H~~~ld~~~~~~~a~~~~g~~~~~l~p~~~~~l~e~~~~ 297 (406)
T COG1228 223 RAVLAAALKAGIPVKAHAHGAD-G-IKLAIRLGA---KSAEHGTLLDHETAALLAEKGAGTPVPVLLPRTKFELRELDYK 297 (406)
T ss_pred HHHHHHHHHCCCceEEEecccc-h-HHHHHHhCc---ceehhhhhcCHhHHHHHhhccCCCccccccchhhhhhhcccch
Confidence 7889999999999999999876 2 233333332 2355877777888888888 664 222221110 111 11
Q ss_pred HHHHHHHhCCCCcEEEecCCCCCCchhhhhcccccCCCCCCcccccccccCCCCCCCCCccccccCCCCCCCCCCCCCCc
Q 025333 131 KAKKMLKVVPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHP 210 (254)
Q Consensus 131 ~~~~~l~~ip~driLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~neP 210 (254)
..+.+++.- =++-+-||.|.... .
T Consensus 298 ~~~~l~~~G--V~vai~TD~~~~~~------------------------------------------------------~ 321 (406)
T COG1228 298 PARKLIDAG--VKVAIGTDHNPGTS------------------------------------------------------H 321 (406)
T ss_pred hHHHHHHCC--CEEEEEcCCCCCch------------------------------------------------------h
Confidence 234444442 47899999987421 2
Q ss_pred ccHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCCC
Q 025333 211 ANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEG 247 (254)
Q Consensus 211 ~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~~ 247 (254)
.++...+...++.. ++++|..+.++-|+.+.+|+.+
T Consensus 322 ~~l~~~m~l~~~~g-mtp~EaL~a~T~naA~alG~~~ 357 (406)
T COG1228 322 GSLALEMALAVRLG-MTPEEALKAATINAAKALGLAD 357 (406)
T ss_pred hHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCcc
Confidence 35666677776765 9999999999999999999874
No 99
>PRK08417 dihydroorotase; Provisional
Probab=93.79 E-value=1.8 Score=40.68 Aligned_cols=37 Identities=14% Similarity=0.149 Sum_probs=29.2
Q ss_pred ccHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCCC
Q 025333 211 ANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEG 247 (254)
Q Consensus 211 ~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~~ 247 (254)
..++-.+..+.+..+++.+++.+.++.|..++|++..
T Consensus 300 ~~~~~~~~~~v~~~~~~~~~~~~~~t~~pA~~lgl~~ 336 (386)
T PRK08417 300 EYFSLCYTYLVKEGIITWSELSRFTSYNPAQFLGLNS 336 (386)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCCCC
Confidence 3455566555555679999999999999999999863
No 100
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=93.76 E-value=5 Score=37.40 Aligned_cols=94 Identities=14% Similarity=0.146 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhcC--CceEEeccchH-------HHHHHHHHhcCCCCCcEEEEeCC--CCHHHHHHHHHCCcEEeecc
Q 025333 54 VGVFRQQLELAKELK--RPASIHCVRAF-------GDLLEIMKSVGPFPDGVIIHSYL--GSAEMVPELSKLGAYFSFSG 122 (254)
Q Consensus 54 ~~vf~~ql~lA~~~~--lPvilH~~~a~-------~~~l~il~~~~~~~~~~IiH~fs--g~~e~~~~~l~~G~y~s~~~ 122 (254)
-.-|..+++.|++.| +|+.+|+.... +.+.+.+ ..+. .| |=|++. .+++.++.+.+.|+-+-+-+
T Consensus 178 ~~~f~~~f~~ar~~g~~l~~t~HAGE~~~~~~~~~~~v~~al-~lg~--~R-IGHG~~~~~dp~ll~~l~~~~I~lEvCP 253 (345)
T cd01321 178 LLDFLPQLLWFPKQCAEIPFFFHAGETNGDGTETDENLVDAL-LLNT--KR-IGHGFALPKHPLLMDLVKKKNIAIEVCP 253 (345)
T ss_pred HHHHHHHHHHHHHhCCCCceEeecCCCcCCCCCChhHHHHHH-HhCC--Cc-CccccccCcCHHHHHHHHHcCCeEEECc
Confidence 367788889999999 99999999643 4566666 3553 33 557665 35888888888888777665
Q ss_pred cccc-------cchHHHHHHHHhCCCCcEEEecCCCCC
Q 025333 123 FLMS-------MKAQKAKKMLKVVPSERILLETDAPDA 153 (254)
Q Consensus 123 ~~~~-------~~~~~~~~~l~~ip~driLlETD~P~~ 153 (254)
.-.. ...--++.+++. + =.+.+.||.|-.
T Consensus 254 tSN~~~~~v~~~~~HPl~~ll~~-G-v~vtinTDDp~~ 289 (345)
T cd01321 254 ISNQVLGLVSDLRNHPAAALLAR-G-VPVVISSDDPGF 289 (345)
T ss_pred chhhhhccccchhhChHHHHHHC-C-CeEEEeCCCcch
Confidence 3110 000013344443 2 278899999853
No 101
>TIGR03314 Se_ssnA putative selenium metabolism protein SsnA. Members of this protein family are found exclusively in genomes that contain putative set of labile selenium-dependent enzyme accessory proteins as well as homologs of a labile selenium-dependent purine hydroxylase. A mutant in this gene in Escherichia coli had improved stationary phase viability. The function is unknown.
Probab=93.74 E-value=0.38 Score=46.07 Aligned_cols=95 Identities=16% Similarity=0.073 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhcCCceEEeccchHHHH-----------HHHHHhcCCCCCcE-EEEeCCCCHHHHHHHHHCCcEEeecc
Q 025333 55 GVFRQQLELAKELKRPASIHCVRAFGDL-----------LEIMKSVGPFPDGV-IIHSYLGSAEMVPELSKLGAYFSFSG 122 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~a~~~~-----------l~il~~~~~~~~~~-IiH~fsg~~e~~~~~l~~G~y~s~~~ 122 (254)
+.++...++|+++++|+.+|+-....+. ++.+.+.|....+. +.||..-+.+.++.+.+.|..++..+
T Consensus 204 ~~l~~~~~lA~~~~~~i~~H~~E~~~e~~~~~~~~g~~~~~~l~~~G~l~~~~~~~H~~~~~~~d~~~la~~g~~v~~cP 283 (441)
T TIGR03314 204 AGLEMCREAVQATGRGFHIHVAEDIYDVEDSHHKYGKDIVERLADFGLLGSKTLAAHCIYLSDREIELLNETDTFVVHNP 283 (441)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHcCCCHHHHHHHCCCCCCCeEEEEEecCCHHHHHHHHHcCCcEEECH
Confidence 6788899999999999999999765443 35556666433344 55999888999999999999998876
Q ss_pred cccc-cc--hHHHHHHHHhCCCCcEEEecCCC
Q 025333 123 FLMS-MK--AQKAKKMLKVVPSERILLETDAP 151 (254)
Q Consensus 123 ~~~~-~~--~~~~~~~l~~ip~driLlETD~P 151 (254)
.... .. ...+.++++.- =++-|.||+.
T Consensus 284 ~sn~~l~~G~~p~~~~~~~G--v~v~LGtD~~ 313 (441)
T TIGR03314 284 ESNMGNAVGYNPVLRMFKNG--ILLGLGTDGY 313 (441)
T ss_pred HHHhhhccCCCCHHHHHHCC--CEEEEcCCCC
Confidence 3210 00 11134555442 4899999974
No 102
>PF00962 A_deaminase: Adenosine/AMP deaminase immunodeficiency disease (SCID); InterPro: IPR001365 Adenosine deaminase (3.5.4.4 from EC) catalyzes the hydrolytic deamination of adenosine into inosine and AMP deaminase (3.5.4.6 from EC) catalyzes the hydrolytic deamination of AMP into IMP. It has been shown [] that these two enzymes share three regions of sequence similarities; these regions are centred on residues which are proposed to play an important role in the catalytic mechanism of these two enzymes.; GO: 0019239 deaminase activity, 0009168 purine ribonucleoside monophosphate biosynthetic process; PDB: 3LGG_B 3LGD_B 2AMX_B 3EWD_A 2QVN_A 2PGF_A 2PGR_A 3EWC_A 1W1I_G 1O5R_A ....
Probab=93.72 E-value=1.6 Score=39.82 Aligned_cols=162 Identities=16% Similarity=0.210 Sum_probs=93.9
Q ss_pred ChhHHHHHHHHhhc---CCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccc--hHHHHHHHHHhc
Q 025333 15 TPNWFSTLKEFFEI---TPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVR--AFGDLLEIMKSV 89 (254)
Q Consensus 15 ~~~~l~~l~~ll~~---~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~--a~~~~l~il~~~ 89 (254)
.+++.+.+.++... ..+++|+=.|-..... + ..|...++.|++.|+++.+|+.. ..+.+.+.+...
T Consensus 146 ~~~~~~~~~~~~~~~~~~~vvG~dl~g~E~~~~----~-----~~~~~~~~~a~~~gl~~t~HaGE~~~~~~~~~ai~~l 216 (331)
T PF00962_consen 146 PDEWAEEIVELASKYPDKGVVGFDLAGDEDGGP----P-----LKFAPAFRKAREAGLKLTVHAGETGGPEHIRDAILLL 216 (331)
T ss_dssp THHHHHHHHHHHHHTTTTTEEEEEEESSTTSTT----G-----GGHHHHHHHHHHTT-EEEEEESSSSTHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHhhcccceEEEEEecCCcccCc----h-----HHHHHHHhhhcccceeecceecccCCcccccchhhhc
Confidence 45555555555433 2466666666554321 1 11888999999999999999985 355666777665
Q ss_pred CCCCCcEEEEeCC--CCHHHHHHHHHCCcEEeecccc-------cccchHHHHHHHHhCCCCcEEEecCCCCCCchhhhh
Q 025333 90 GPFPDGVIIHSYL--GSAEMVPELSKLGAYFSFSGFL-------MSMKAQKAKKMLKVVPSERILLETDAPDALPKAELN 160 (254)
Q Consensus 90 ~~~~~~~IiH~fs--g~~e~~~~~l~~G~y~s~~~~~-------~~~~~~~~~~~l~~ip~driLlETD~P~~~p~~~~~ 160 (254)
+. .| |=|++. .+++.++.+.+.++-+-+.+.- .....--++++++.- =.+.+-||.|-+.
T Consensus 217 ~~--~R-IgHG~~~~~~p~l~~~~~~~~I~iEvcptSN~~~~~~~~~~~hP~~~~~~~g--v~v~i~TDd~~~~------ 285 (331)
T PF00962_consen 217 GA--DR-IGHGVRLIKDPELLELLAERQIPIEVCPTSNVQLGAVPSYEEHPLRKLLDAG--VPVSINTDDPGVF------ 285 (331)
T ss_dssp T---SE-EEE-GGGGGSHHHHHHHHHTT-EEEE-HHHHHHTTSSSTGGG-CHHHHHHTT---EEEE--BSHHHH------
T ss_pred cc--ee-ecchhhhhhhhHHHHHHHHhCCCeeeCCCcCcccceeeecchhHHHHHHHcC--CceeccCCCcccc------
Confidence 53 33 779875 3577778888888888776531 111111145555542 3788899887431
Q ss_pred cccccCCCCCCcccccccccCCCCCCCCCccccccCCCCCCCCCCCCCCcccHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 025333 161 SLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAI 240 (254)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~neP~~l~~v~~~lA~i~~~~~eev~~~~~~N~~ 240 (254)
| .++..=+..+++..|++.+++.+.. .|+.
T Consensus 286 -----------------------------------~--------------~~l~~ey~~~~~~~~l~~~~l~~l~-~nsi 315 (331)
T PF00962_consen 286 -----------------------------------G--------------TTLSDEYYLAAEAFGLSLADLKQLA-RNSI 315 (331)
T ss_dssp -----------------------------------T---------------SHHHHHHHHHHHHT--HHHHHHHH-HHHH
T ss_pred -----------------------------------C--------------CCcHHHHHHHHHHcCCCHHHHHHHH-HHHH
Confidence 1 1255666777788899999998877 4666
Q ss_pred HhcCCC
Q 025333 241 RLFSYE 246 (254)
Q Consensus 241 ~~f~~~ 246 (254)
+.=.++
T Consensus 316 ~~sf~~ 321 (331)
T PF00962_consen 316 EASFLS 321 (331)
T ss_dssp HCSSS-
T ss_pred HHHcCC
Confidence 553343
No 103
>TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type. All proteins described by this model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase.
Probab=93.66 E-value=2.4 Score=40.12 Aligned_cols=35 Identities=14% Similarity=0.214 Sum_probs=26.9
Q ss_pred cHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCCC
Q 025333 212 NIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEG 247 (254)
Q Consensus 212 ~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~~ 247 (254)
.++.++..+.+ .+++++++.+.+..|..++|++++
T Consensus 318 ~~~~~~~~~~~-~~~~~~~~~~~~t~~pa~~~g~~~ 352 (411)
T TIGR00857 318 ALPLLLQLLVK-GLISLKDLIRMLSINPARIFGLPD 352 (411)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHhHHHHHHhCCCC
Confidence 45555544433 479999999999999999999864
No 104
>TIGR03178 allantoinase allantoinase. This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases.
Probab=93.26 E-value=4.4 Score=38.73 Aligned_cols=155 Identities=17% Similarity=0.101 Sum_probs=84.5
Q ss_pred CHHHHHHHHHHHHHHHHhcCCceE-Eeccch-HHHHHHHHHhcCCCCCc--EEEEeCCCCHHHHHHHHHCCcEEeecccc
Q 025333 49 DFMDQVGVFRQQLELAKELKRPAS-IHCVRA-FGDLLEIMKSVGPFPDG--VIIHSYLGSAEMVPELSKLGAYFSFSGFL 124 (254)
Q Consensus 49 ~~~~Q~~vf~~ql~lA~~~~lPvi-lH~~~a-~~~~l~il~~~~~~~~~--~IiH~fsg~~e~~~~~l~~G~y~s~~~~~ 124 (254)
+...+.....+.+++|+++++||. .|.-.. .-++++.+++.+. +.. ...|+..-+.+.+ .+.|.++.+++.+
T Consensus 210 p~~ae~~~~~~~~~la~~~g~~vhi~Hiss~~~~~~i~~~~~~g~-~it~e~~ph~l~l~~~~~---~~~~~~~~~~Ppl 285 (443)
T TIGR03178 210 PVFAEVEAIRRTLALAKVTGCRVHVVHLSSAEAVELITEAKQEGL-DVTVETCPHYLTLTAEEV---PDGGTLAKCAPPI 285 (443)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHCCC-cEEEEECccceEecHHHh---hCcCcceEEcCCC
Confidence 456677889999999999999984 466652 2233444444442 111 1236543333333 2357777777654
Q ss_pred cccc-hHHHHHHHHhCCCCcEEEecCC-CCCCchhhhhcccccCCCCCCcccccccccCCCCCCCCCccccccCCCCCCC
Q 025333 125 MSMK-AQKAKKMLKVVPSERILLETDA-PDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTL 202 (254)
Q Consensus 125 ~~~~-~~~~~~~l~~ip~driLlETD~-P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 202 (254)
.... .+.+.+.++.- -...+-||. |+....... ..+| ... .|
T Consensus 286 r~~~~~~~l~~~l~~G--~i~~i~SDh~p~~~~~K~~-~~~~-~~~--------------------------~G------ 329 (443)
T TIGR03178 286 RDLANQEGLWEALLNG--LIDCVVSDHSPCTPDLKRA-GDFF-KAW--------------------------GG------ 329 (443)
T ss_pred CChHHHHHHHHHHHcC--CccEEeCCCCCCChHHcCc-CChh-hCC--------------------------CC------
Confidence 3211 12344455442 234788998 653211000 0000 000 01
Q ss_pred CCCCCCCcccHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCC
Q 025333 203 PKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYE 246 (254)
Q Consensus 203 ~~~~~neP~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~ 246 (254)
...--..++..+..+..-.+++++++.+.+..|..++|+++
T Consensus 330 ---~~g~e~~l~~~~~~~~~~~~l~~~~~~~~~t~~pA~~~g~~ 370 (443)
T TIGR03178 330 ---IAGLQSTLDVMFDEAVQKRGLPLEDIARLMATNPAKRFGLA 370 (443)
T ss_pred ---eeEHHHhHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHcCCC
Confidence 10111234445544445568999999999999999999994
No 105
>PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional
Probab=93.20 E-value=3.6 Score=38.85 Aligned_cols=160 Identities=10% Similarity=0.127 Sum_probs=89.1
Q ss_pred HHHHHHHhcCCceEE-eccchHHHHHHHHHhcCCCCCcEEEEeCCCCHH-------HHHHHHH-CCcEEeecccccccch
Q 025333 59 QQLELAKELKRPASI-HCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSAE-------MVPELSK-LGAYFSFSGFLMSMKA 129 (254)
Q Consensus 59 ~ql~lA~~~~lPvil-H~~~a~~~~l~il~~~~~~~~~~IiH~fsg~~e-------~~~~~l~-~G~y~s~~~~~~~~~~ 129 (254)
..++.+.+.|..|++ |+--.++++.+.++. | .+.+-|.|++-.. .+..++. ..+|.++-..-.....
T Consensus 179 ~~i~~l~~~gi~vs~GHs~A~~~~~~~a~~~-G---a~~~THlfNaM~~~~hR~pg~vga~l~~~~~~~elI~Dg~Hv~p 254 (382)
T PRK11170 179 EVIRKLVEAGIVVSAGHSNATYEEAKAGFRA-G---ITFATHLYNAMPYITGREPGLVGAILDEPDVYCGIIADGLHVDY 254 (382)
T ss_pred HHHHHHHHCCcEEEeeCCcCCHHHHHHHHHc-C---CCEEeeccccCCcccCCCcchhhHhhcCCCcEEEEEcCcccCCH
Confidence 456666777777776 554445555555543 3 3456687776422 3333443 3567666533223345
Q ss_pred HHHHHHHHhCCCCcEEEecCCCCCCchhhhhcccccCCCCCCcccccccccCCCCCCCCCccccccCCCCCCCCCCCCCC
Q 025333 130 QKAKKMLKVVPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNH 209 (254)
Q Consensus 130 ~~~~~~l~~ip~driLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ne 209 (254)
.-++-+++.-+ +|+++=||+--..-.| .+.+.| .+..---++ ..... .+ | .--..
T Consensus 255 ~~~~~~~~~k~-~~~~lvtDa~~~~G~~-~g~y~l-~~~~v~v~~-g~~~~---------~~----G--------~LAGs 309 (382)
T PRK11170 255 ANIRNAKRLKG-DKLCLVTDATAPAGAN-IEQFIF-AGKTIYYRD-GLCVD---------EN----G--------TLSGS 309 (382)
T ss_pred HHHHHHHHhcC-CcEEEEeccccCCCCC-CCeEEE-CCEEEEEEC-CEEEC---------CC----C--------ccccc
Confidence 55666777777 9999999985322111 011111 110000000 00000 00 0 01113
Q ss_pred cccHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCCC
Q 025333 210 PANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEG 247 (254)
Q Consensus 210 P~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~~ 247 (254)
...+.+.++.+.+..+++++++.+..+.|..+++++.+
T Consensus 310 ~l~l~~~v~~l~~~~~~~~~eal~~aT~npA~~lgl~~ 347 (382)
T PRK11170 310 ALTMIEAVRNLVEHVGIALDEALRMATLYPARAIGVDK 347 (382)
T ss_pred HhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCC
Confidence 45677777777777899999999999999999999975
No 106
>PRK08323 phenylhydantoinase; Validated
Probab=93.02 E-value=4 Score=38.94 Aligned_cols=34 Identities=15% Similarity=0.161 Sum_probs=26.2
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCC
Q 025333 213 IHNVLDYVASLLDMTKEELAELSYRNAIRLFSYE 246 (254)
Q Consensus 213 l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~ 246 (254)
++..+.....-..++.+++.+.++.|..++|++.
T Consensus 343 ~~~l~~~~~~~~~~~~~~~~~~~t~~pA~~lgl~ 376 (459)
T PRK08323 343 MPLLFSEGVMTGRITLNRFVELTSTNPAKIFGLY 376 (459)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHhhHHHHHhCCC
Confidence 4444544334467999999999999999999984
No 107
>COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only]
Probab=92.49 E-value=1.5 Score=41.68 Aligned_cols=96 Identities=18% Similarity=0.234 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHhcCCceEEeccchHHHHHHHHH-----------hcCCCC-CcEEEEeCCCCHHHHHHHHHCCcEEeec
Q 025333 54 VGVFRQQLELAKELKRPASIHCVRAFGDLLEIMK-----------SVGPFP-DGVIIHSYLGSAEMVPELSKLGAYFSFS 121 (254)
Q Consensus 54 ~~vf~~ql~lA~~~~lPvilH~~~a~~~~l~il~-----------~~~~~~-~~~IiH~fsg~~e~~~~~l~~G~y~s~~ 121 (254)
.+.++...++|+++|+||.+|+-....++....+ ..+... ..+.+||...+.+....+.+.|+-++..
T Consensus 197 ~~~~~~~~~l~~~~~~~v~iH~~E~~~e~~~~~~~~g~~~~~~~~~~g~l~~~~~~~H~~~~~~~e~~~l~~~g~~v~~c 276 (421)
T COG0402 197 PELLESLDELARKYGLPVHIHLAETLDEVERVLEPYGARPVERLDLLGLLGSHTLLAHCVHLSEEELELLAESGASVVHC 276 (421)
T ss_pred HHHHHHHHHHHhcCCCceEEEecCcHHHHHHHHhhcCCCHHHHHHHcCCCCCCeEEEEeccCCHHHHHHHhhCCCeEEEC
Confidence 3566667777779999999999986666555444 344222 2356699999988888888889998887
Q ss_pred cccc-ccch--HHHHHHHHhCCCCcEEEecCCC
Q 025333 122 GFLM-SMKA--QKAKKMLKVVPSERILLETDAP 151 (254)
Q Consensus 122 ~~~~-~~~~--~~~~~~l~~ip~driLlETD~P 151 (254)
+... ++.+ --.+++++.. =++.+.||+-
T Consensus 277 P~sN~~L~sG~~p~~~~~~~g--v~v~~gTD~~ 307 (421)
T COG0402 277 PRSNLKLGSGIAPVRRLLERG--VNVALGTDGA 307 (421)
T ss_pred cchhccccCCCCCHHHHHHcC--CCEEEecCCc
Confidence 6421 1110 1145555554 6899999994
No 108
>KOG4245 consensus Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=92.47 E-value=1 Score=39.16 Aligned_cols=66 Identities=20% Similarity=0.066 Sum_probs=38.5
Q ss_pred ceeeccccccccCChhHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccc
Q 025333 2 DWVCFIFRFVQERTPNWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVR 77 (254)
Q Consensus 2 ~~~G~HP~~~~~~~~~~l~~l~~ll~~~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~ 77 (254)
.++|.-|-.+.+.. ++++++.+.+-...++ |||---. +.++++| =|-.....|.++.+.+.+|--+
T Consensus 68 v~lgtlpmn~~e~a---vee~~rcvk~lg~~g~-eigshv~----e~~ld~~--d~~ply~~~e~l~~~lfvhpwd 133 (297)
T KOG4245|consen 68 VGLGTLPMNAPELA---VEEMERCVKELGFKGF-EIGSHVA----EKDLDAQ--DFFPLYAAAEELKCSLFVHPWD 133 (297)
T ss_pred cccCccCCcCHHHH---HHHHHHHHHHcCCCce-eeccccc----cccCchH--HHhHHHHHHHhheeeEEecchh
Confidence 35566666665543 4555555543223333 5554322 2344454 3556778899999999999765
No 109
>PRK08044 allantoinase; Provisional
Probab=92.05 E-value=2.5 Score=40.62 Aligned_cols=154 Identities=15% Similarity=0.091 Sum_probs=86.0
Q ss_pred CHHHHHHHHHHHHHHHHhcCCce-EEeccchH-HHHHHHHHhcCCCCCc--EEEEeCCCCHHHHHHHHHCCcEEeecccc
Q 025333 49 DFMDQVGVFRQQLELAKELKRPA-SIHCVRAF-GDLLEIMKSVGPFPDG--VIIHSYLGSAEMVPELSKLGAYFSFSGFL 124 (254)
Q Consensus 49 ~~~~Q~~vf~~ql~lA~~~~lPv-ilH~~~a~-~~~l~il~~~~~~~~~--~IiH~fsg~~e~~~~~l~~G~y~s~~~~~ 124 (254)
+...+.....+.+++|+++|+|+ +.|+.... -+++.-.++.|. +.. +..|+..-+.+.+. +.|..+-+++.+
T Consensus 216 P~~~E~~~v~r~~~lA~~~g~~vhi~HiSt~~~~~~i~~ak~~G~-~it~e~~~h~L~l~~~~~~---~~~~~~k~~PPl 291 (449)
T PRK08044 216 PVFTEVEAIRRVLYLAKVAGCRLHVCHISSPEGVEEVTRARQEGQ-DVTCESCPHYFVLDTDQFE---EIGTLAKCSPPI 291 (449)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHCCC-CEEEEcChhhhcccHHHhh---CCCCcEEEcCCC
Confidence 56677788999999999999998 56887532 222232344442 111 23476655554433 247777777754
Q ss_pred cccchHHHHHHHHhCC-CCcEEEecCC-CCCCchhhhhcccccCCCCCCcccccccccCCCCCCCCCccccccCCCCCCC
Q 025333 125 MSMKAQKAKKMLKVVP-SERILLETDA-PDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTL 202 (254)
Q Consensus 125 ~~~~~~~~~~~l~~ip-~driLlETD~-P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 202 (254)
.. ......+++.+- -.--.+-||- |+...... .-|.+.. . |
T Consensus 292 r~--~~d~~aL~~~l~~G~id~i~sDH~P~~~~~K~---~~~~~~~--------------~------------g------ 334 (449)
T PRK08044 292 RD--LENQKGMWEKLFNGEIDCLVSDHSPCPPEMKA---GNIMEAW--------------G------------G------ 334 (449)
T ss_pred CC--hHHHHHHHHHHhCCCceEEEcCCCCCChHHcc---CChhhCC--------------C------------C------
Confidence 32 122222333331 1355678885 43211100 0000000 0 0
Q ss_pred CCCCCCCcccHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCC
Q 025333 203 PKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYE 246 (254)
Q Consensus 203 ~~~~~neP~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~ 246 (254)
-..--..++..+..+..-++++++++.+.+..|..++|+++
T Consensus 335 ---~~g~e~~l~~~~~~~v~~~~l~~~~~v~~~s~npA~~lgl~ 375 (449)
T PRK08044 335 ---IAGLQNCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGLQ 375 (449)
T ss_pred ---ceEHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhHHHHhCCC
Confidence 00011235555655556678999999999999999999995
No 110
>PRK13404 dihydropyrimidinase; Provisional
Probab=91.84 E-value=4.9 Score=39.02 Aligned_cols=163 Identities=12% Similarity=0.092 Sum_probs=84.5
Q ss_pred CHHHHHHHHHHHHHHHHhcCCce-EEeccchH-HHHHHHHHhcCCCCCcEEE----EeCCCCHHHHHHHHHCCcEEeecc
Q 025333 49 DFMDQVGVFRQQLELAKELKRPA-SIHCVRAF-GDLLEIMKSVGPFPDGVII----HSYLGSAEMVPELSKLGAYFSFSG 122 (254)
Q Consensus 49 ~~~~Q~~vf~~ql~lA~~~~lPv-ilH~~~a~-~~~l~il~~~~~~~~~~Ii----H~fsg~~e~~~~~l~~G~y~s~~~ 122 (254)
+.........+.+++|+++|.|+ ++|.-... -+++..+++.+. .+.. |+..-+.+.+...-..|.++.+++
T Consensus 215 p~~~E~~~v~~~~~la~~~g~~~hi~Hvs~~~~~~~i~~~k~~g~---~vt~e~~ph~L~l~~~~~~~~~~~g~~~k~~P 291 (477)
T PRK13404 215 PMLAEREATHRAIALAELVDVPILIVHVSGREAAEQIRRARGRGL---KIFAETCPQYLFLTAEDLDRPGMEGAKYICSP 291 (477)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHCCC---eEEEEEChhhhccCHHHhcCccccCCceEECC
Confidence 55677788899999999999999 77877532 234444444432 1222 555444443321111577888887
Q ss_pred cccccch-HHHHHHHHhCCCCcEEEecCC-CCCCchhhhhcccccCCCCCCcccccccccCCCCCCCCCccccccCCCCC
Q 025333 123 FLMSMKA-QKAKKMLKVVPSERILLETDA-PDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSS 200 (254)
Q Consensus 123 ~~~~~~~-~~~~~~l~~ip~driLlETD~-P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 200 (254)
.+..... +.+.+.+..- .-=.+-||- |+...... ++. .+ ..+ ..+.
T Consensus 292 plr~~~d~~aL~~~l~~G--~id~i~sDHap~~~~eK~--------~~~-------~~----------~~~----~~~~- 339 (477)
T PRK13404 292 PPRDKANQEAIWNGLADG--TFEVFSSDHAPFRFDDTD--------GKL-------AA----------GAN----PSFK- 339 (477)
T ss_pred CCCChHHHHHHHHHHhCC--CceEEecCCCCCCcccch--------hhh-------hc----------cCC----CCHh-
Confidence 5532111 2233333332 123578886 43210000 000 00 000 0000
Q ss_pred CCCCCCCCCcccHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCC
Q 025333 201 TLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYE 246 (254)
Q Consensus 201 ~~~~~~~neP~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~ 246 (254)
..+.+...--..++..++.+..-.+++.+++.+.++.|..++|++.
T Consensus 340 ~~~~G~~gie~~l~~ll~~~v~~~~ls~~~~~~~~t~~pA~~lgl~ 385 (477)
T PRK13404 340 AIANGIPGIETRLPLLFSEGVVKGRISLNRFVALTSTNPAKLYGLY 385 (477)
T ss_pred hCCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCC
Confidence 0000011111235555555445567999999999999999999994
No 111
>cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin. The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues.
Probab=91.60 E-value=8.6 Score=36.55 Aligned_cols=35 Identities=17% Similarity=0.165 Sum_probs=26.9
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCCC
Q 025333 213 IHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEG 247 (254)
Q Consensus 213 l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~~ 247 (254)
++..+.....-..++.+++.+.++.|..++|++.+
T Consensus 343 l~~l~~~~~~~~~~~~~~~~~~~t~~pA~~~gl~~ 377 (447)
T cd01314 343 MPLLWSEGVAKGRITLEKFVELTSTNPAKIFGLYP 377 (447)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHhhHHHHHhCCCC
Confidence 44444444344579999999999999999999854
No 112
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=91.32 E-value=8.2 Score=36.48 Aligned_cols=161 Identities=13% Similarity=0.130 Sum_probs=88.0
Q ss_pred HHHHHHHhcCCceEE-eccchHHHHHHHHHhcCCCCCcEEEEeCCCCH-------HHHHHHHH-CCcEEeecccccccch
Q 025333 59 QQLELAKELKRPASI-HCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSA-------EMVPELSK-LGAYFSFSGFLMSMKA 129 (254)
Q Consensus 59 ~ql~lA~~~~lPvil-H~~~a~~~~l~il~~~~~~~~~~IiH~fsg~~-------e~~~~~l~-~G~y~s~~~~~~~~~~ 129 (254)
..++.+.+.|.-|++ |+--.++++.+.++. | .+.+-|.|++-. -.+..++. .++|.++-..-.....
T Consensus 181 ~~i~~l~~~gi~vs~GHs~A~~~~~~~a~~~-G---a~~~THlfNaM~~~~hR~pg~vga~l~~~~~~~elI~Dg~Hv~p 256 (380)
T TIGR00221 181 ELIRHLKDAGIIVSAGHTNATYELAKAAFKA-G---ATHATHLYNAMSPIHHREPGVIGAVLDHDDVYTEIIADGIHIHP 256 (380)
T ss_pred HHHHHHHHCCeEEEeeCCCCCHHHHHHHHHc-C---CCeeeeeccCCCCcCCCCCcHHHHHhcCCCcEEEEEcCCCcCCH
Confidence 445566667777765 666556666555542 3 235668777532 23344443 3677776543223345
Q ss_pred HHHHHHHHhCCCCcEEEecCCCCCCchhhhhcccccCCCCCCcccccccccCCCCCCCCCccccccCCCCCCCCCCCCCC
Q 025333 130 QKAKKMLKVVPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNH 209 (254)
Q Consensus 130 ~~~~~~l~~ip~driLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ne 209 (254)
.-++-+.+.-+.+||++=||+--..--|. +.+.| .+..---++ ...+. .++...| .
T Consensus 257 ~~~~~~~r~kg~~~~~lvtDa~~~~g~~~-G~y~l-~~~~v~~~~-g~~~~---------~~g~LAG---------s--- 312 (380)
T TIGR00221 257 LNIRLAKKLKGDSKLCLVTDSMAAAGAKD-GVFIF-GGKTVYIRE-GTCLD---------SNGTLAG---------S--- 312 (380)
T ss_pred HHHHHHHHhcCCCcEEEEeccccccCCCC-ceEeE-CCEEEEEEC-CEEEc---------CCCceec---------h---
Confidence 55666777777899999999843222111 11222 110000000 00000 0000111 0
Q ss_pred cccHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCCC
Q 025333 210 PANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEG 247 (254)
Q Consensus 210 P~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~~ 247 (254)
=..+.+.++.+.+..+++++++.+..+.|..++|++++
T Consensus 313 ~ltl~~~v~~l~~~~~~~~~eal~~aT~npA~~lgl~~ 350 (380)
T TIGR00221 313 SLTMIEGARNLVEFTNISLTDAARMSSLNPARALGIDD 350 (380)
T ss_pred hhhHHHHHHHHHHhhCCCHHHHHHHHhHHHHHHhCCCC
Confidence 13455566666666789999999999999999999974
No 113
>TIGR00856 pyrC_dimer dihydroorotase, homodimeric type. This homodimeric form of dihydroorotase is less common in microbial genomes than a related dihydroorotase that appears in a complex with aspartyltranscarbamoylase or as a homologous domain in multifunctional proteins of pyrimidine biosynthesis in higher eukaryotes.
Probab=90.95 E-value=7.1 Score=36.29 Aligned_cols=36 Identities=11% Similarity=0.172 Sum_probs=27.2
Q ss_pred CcccHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCC
Q 025333 209 HPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYE 246 (254)
Q Consensus 209 eP~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~ 246 (254)
-+..++-++..+ +- +++.+.+.+.+..|..++||++
T Consensus 266 ~e~~l~~~~~~~-~~-~~~l~~~v~~~s~nPAk~~gl~ 301 (341)
T TIGR00856 266 APTALPSYAEVF-EE-MNALENLEAFCSDNGPQFYGLP 301 (341)
T ss_pred HHHHHHHHHHHH-hc-CCCHHHHHHHHhHhHHHHhCCC
Confidence 344555555333 33 6899999999999999999994
No 114
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=90.17 E-value=12 Score=32.85 Aligned_cols=121 Identities=14% Similarity=0.122 Sum_probs=64.7
Q ss_pred hHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHH-------HHHHHHH-hcCCceEEec-----cchHHHHH
Q 025333 17 NWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFR-------QQLELAK-ELKRPASIHC-----VRAFGDLL 83 (254)
Q Consensus 17 ~~l~~l~~ll~~~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~-------~ql~lA~-~~~lPvilH~-----~~a~~~~l 83 (254)
+...++.+.+.+. +-+| |+|+.+.... ......|....+ ..++-.+ ..++|+++++ ....+..+
T Consensus 18 ~~~~~~~~~l~~~-ad~i-Elgip~sdp~-adG~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~n~~~~~~~~~i 94 (244)
T PRK13125 18 ESFKEFIIGLVEL-VDIL-ELGIPPKYPK-YDGPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYLEDYVDSLDNFL 94 (244)
T ss_pred HHHHHHHHHHHhh-CCEE-EECCCCCCCC-CCCHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEecchhhhCHHHHH
Confidence 3333444445555 6666 9999886431 122344554433 2344443 3688987663 33456667
Q ss_pred HHHHhcCCCCCcEEEEe--CC---CCHHHHHHHHHCCcEEeecccccccchHHHHHHHHhCCCCcEE
Q 025333 84 EIMKSVGPFPDGVIIHS--YL---GSAEMVPELSKLGAYFSFSGFLMSMKAQKAKKMLKVVPSERIL 145 (254)
Q Consensus 84 ~il~~~~~~~~~~IiH~--fs---g~~e~~~~~l~~G~y~s~~~~~~~~~~~~~~~~l~~ip~driL 145 (254)
+.+.+.|. ..+++|. +. -..+..+.+.+.|+-.++--.++. ..+.++.+++.. +.++
T Consensus 95 ~~~~~~Ga--dgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T-~~e~l~~~~~~~--~~~l 156 (244)
T PRK13125 95 NMARDVGA--DGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKF-PDLLIHRLSKLS--PLFI 156 (244)
T ss_pred HHHHHcCC--CEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCC-CHHHHHHHHHhC--CCEE
Confidence 77777775 4577785 32 112333444556766555433221 235566676664 4444
No 115
>PRK09236 dihydroorotase; Reviewed
Probab=90.14 E-value=15 Score=35.14 Aligned_cols=154 Identities=10% Similarity=0.042 Sum_probs=85.0
Q ss_pred CHHHHHHHHHHHHHHHHhcCCceEEeccchHHHHHHHHHhcCCCCCcE----EEEeCCCCHHHHHHHHHCCcEEeecccc
Q 025333 49 DFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGV----IIHSYLGSAEMVPELSKLGAYFSFSGFL 124 (254)
Q Consensus 49 ~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a~~~~l~il~~~~~~~~~~----IiH~fsg~~e~~~~~l~~G~y~s~~~~~ 124 (254)
+.........+.+++|++++.|+.+|.....+.+ +++++......++ ..|+..-+.+.+. ..|.++-+++.+
T Consensus 210 p~~ae~~av~~~~~la~~~~~~~hi~h~st~~~~-~~i~~~~~~g~~vt~e~~~H~l~l~~~~~~---~~~~~~~~~Ppl 285 (444)
T PRK09236 210 SAEACYKSSSLAVSLAKKHGTRLHVLHISTAKEL-SLFENGPLAEKRITAEVCVHHLWFDDSDYA---RLGNLIKCNPAI 285 (444)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCEEEEeCCCHHHH-HHHHHHHHCCCCEEEEEchhhhhcCHHHHh---ccCceEEECCCC
Confidence 4456666678999999999999999777654333 3333221111122 2476655554433 358888888754
Q ss_pred cccc-hHHHHHHHHhCCCCcEEEecCCCCCCchhhhhcccccCCCCCCcccccccccCCCCCCCCCccccccCCCCCCCC
Q 025333 125 MSMK-AQKAKKMLKVVPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLP 203 (254)
Q Consensus 125 ~~~~-~~~~~~~l~~ip~driLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 203 (254)
.... ...+.++++.- -...+.||..-....... .-|.... . |
T Consensus 286 r~~~~~~~l~~~l~~G--~i~~igtDh~p~~~~~k~--~~~~~~~--------------~------------G------- 328 (444)
T PRK09236 286 KTASDREALRQALADD--RIDVIATDHAPHTWEEKQ--GPYFQAP--------------S------------G------- 328 (444)
T ss_pred CCHHHHHHHHHHHhCC--CCcEEECCCCCCCHHHhc--CCcccCC--------------C------------C-------
Confidence 2211 12244455442 356899997422211000 0000000 0 1
Q ss_pred CCCCCCcccHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCC
Q 025333 204 KETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYE 246 (254)
Q Consensus 204 ~~~~neP~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~ 246 (254)
...--..++.+++.+ .-.+++++++.+.+..|..++|+++
T Consensus 329 --~~~~e~~l~~l~~~v-~~~~~~~~~~~~~~t~~pA~~lgl~ 368 (444)
T PRK09236 329 --LPLVQHALPALLELV-HEGKLSLEKVVEKTSHAPAILFDIK 368 (444)
T ss_pred --cccHHHHHHHHHHHH-HhcCCCHHHHHHHHHHhHHHhcCCC
Confidence 111112245555443 3357999999999999999999995
No 116
>PRK06189 allantoinase; Provisional
Probab=89.69 E-value=11 Score=36.10 Aligned_cols=154 Identities=17% Similarity=0.113 Sum_probs=82.2
Q ss_pred CHHHHHHHHHHHHHHHHhcCCce-EEeccchHHHHHHHHHhcCCCCCcE----EEEeCCCCHHHHHHHHHCCcEEeeccc
Q 025333 49 DFMDQVGVFRQQLELAKELKRPA-SIHCVRAFGDLLEIMKSVGPFPDGV----IIHSYLGSAEMVPELSKLGAYFSFSGF 123 (254)
Q Consensus 49 ~~~~Q~~vf~~ql~lA~~~~lPv-ilH~~~a~~~~l~il~~~~~~~~~~----IiH~fsg~~e~~~~~l~~G~y~s~~~~ 123 (254)
+...+.....+.+.+|+++|+|| +.|.-. .+-++++++.+.....+ ..|+..-+.+... ..|.++-+++.
T Consensus 213 P~~~E~~~v~~~l~la~~~g~~~hi~HiSt--~~~~~~i~~~k~~g~~vt~ev~ph~L~l~~~~~~---~~~~~~~~~Pp 287 (451)
T PRK06189 213 PVVAELEAVQRALLYAQETGCPLHFVHISS--GKAVALIAEAKKRGVDVSVETCPHYLLFTEEDFE---RIGAVAKCAPP 287 (451)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCEEEEECCC--HHHHHHHHHHHHCCCcEEEEeCHHHhhcCHhHhh---CcCCceEEeCC
Confidence 34456778889999999999997 455554 23444444332111122 2365433443332 23555666664
Q ss_pred ccccc-hHHHHHHHHhCCCCcEEEecCC-CCCCchhhhhcccccCCCCCCcccccccccCCCCCCCCCccccccCCCCCC
Q 025333 124 LMSMK-AQKAKKMLKVVPSERILLETDA-PDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSST 201 (254)
Q Consensus 124 ~~~~~-~~~~~~~l~~ip~driLlETD~-P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 201 (254)
+.... .+.+.++++.- ....+-||. |+ .+.-.....+| +.. .|
T Consensus 288 lr~~~~~~~L~~~l~~G--~i~~i~sDh~p~-~~~~K~~~~~~-~~~--------------------------~G----- 332 (451)
T PRK06189 288 LRSRSQKEELWRGLLAG--EIDMISSDHSPC-PPELKEGDDFF-LVW--------------------------GG----- 332 (451)
T ss_pred CCChhhHHHHHHHHhCC--CceEEECCCCCC-CHHHcCcCCcc-cCC--------------------------CC-----
Confidence 43211 13345555543 345789998 33 22100000000 000 01
Q ss_pred CCCCCCCCcccHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCC
Q 025333 202 LPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYE 246 (254)
Q Consensus 202 ~~~~~~neP~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~ 246 (254)
...--..++..+..+..-.+++.+++.+.+..|..++|+++
T Consensus 333 ----~~g~e~~l~~~~~~~~~~~~l~~~~~~~~~t~npA~~lgl~ 373 (451)
T PRK06189 333 ----ISGGQSTLLVMLTEGYIERGIPLETIARLLATNPAKRFGLP 373 (451)
T ss_pred ----ceeHHHHHHHHHHHHHhcCCCCHHHHHHHHhhhHHHHhCCC
Confidence 11111345555554445567999999999999999999995
No 117
>TIGR03121 one_C_dehyd_A formylmethanofuran dehydrogenase subunit A. Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably.
Probab=89.35 E-value=5.4 Score=39.72 Aligned_cols=24 Identities=13% Similarity=0.196 Sum_probs=22.4
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCC
Q 025333 224 LDMTKEELAELSYRNAIRLFSYEG 247 (254)
Q Consensus 224 ~~~~~eev~~~~~~N~~~~f~~~~ 247 (254)
|+++.+++++.++.|..++|++++
T Consensus 428 Re~sL~EI~~mtTanPAkaLGL~d 451 (556)
T TIGR03121 428 REYSLYEIAIMTRAGPAKLLGLTD 451 (556)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCC
Confidence 789999999999999999999964
No 118
>PRK09059 dihydroorotase; Validated
Probab=89.32 E-value=9 Score=36.68 Aligned_cols=34 Identities=12% Similarity=0.058 Sum_probs=27.2
Q ss_pred cHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCC
Q 025333 212 NIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYE 246 (254)
Q Consensus 212 ~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~ 246 (254)
.++.... +....+++.+++.+.+..|..++|+++
T Consensus 337 ~l~~~~~-~v~~~~l~l~~~~~~~s~nPA~~~gl~ 370 (429)
T PRK09059 337 LLAAALR-LYHNGEVPLLRLIEALSTRPAEIFGLP 370 (429)
T ss_pred HHHHHHH-HHHcCCCCHHHHHHHHhHHHHHHhCCC
Confidence 4555554 345567999999999999999999995
No 119
>PRK07575 dihydroorotase; Provisional
Probab=88.70 E-value=8.9 Score=36.70 Aligned_cols=153 Identities=14% Similarity=0.084 Sum_probs=85.9
Q ss_pred CHHHHHHHHHHHHHHHHhcCCceEE-eccchHHHHHHHHHhcCCC--CCcEEEEeCCCCHHHHHHHHHCCcEEeeccccc
Q 025333 49 DFMDQVGVFRQQLELAKELKRPASI-HCVRAFGDLLEIMKSVGPF--PDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLM 125 (254)
Q Consensus 49 ~~~~Q~~vf~~ql~lA~~~~lPvil-H~~~a~~~~l~il~~~~~~--~~~~IiH~fsg~~e~~~~~l~~G~y~s~~~~~~ 125 (254)
+...+...+.+.+++|++++.|+.| |+- ..+-++++++.... ..-+..|+.--+.+.+. +.|.++=+++.+.
T Consensus 206 p~~aE~~av~~~~~la~~~g~~lhi~HiS--t~~~v~~i~~~k~~~vt~ev~phhL~l~~~~~~---~~~~~~k~~PPLR 280 (438)
T PRK07575 206 DEEAALLATRLALKLSKKYQRRLHILHLS--TAIEAELLRQDKPSWVTAEVTPQHLLLNTDAYE---RIGTLAQMNPPLR 280 (438)
T ss_pred cHHHHHHHHHHHHHHHHHHCCCEEEEECC--CHHHHHHHHHhcCCCEEEEEchhhheeCHHHHh---CCCceEEEeCCCC
Confidence 4566778889999999999999988 887 34445555544221 11234454434444332 3577777776543
Q ss_pred ccc-hHHHHHHHHhCCCCcEEEecCCCCCCchhhhhcccccCCCCCCcccccccccCCCCCCCCCccccccCCCCCCCCC
Q 025333 126 SMK-AQKAKKMLKVVPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPK 204 (254)
Q Consensus 126 ~~~-~~~~~~~l~~ip~driLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 204 (254)
..+ ...+.+.++.- .-..+-||.--....... ..+| + + +. |
T Consensus 281 ~~~d~~~L~~~l~~G--~id~i~sDh~p~~~~~k~-~~~~-~-----------~---~~------------G-------- 322 (438)
T PRK07575 281 SPEDNEALWQALRDG--VIDFIATDHAPHTLEEKA-QPYP-N-----------S---PS------------G-------- 322 (438)
T ss_pred CHHHHHHHHHHHhCC--CCCEEecCCCCCCHHHcc-CCcc-c-----------C---CC------------C--------
Confidence 211 12233444432 244588997322211000 0000 0 0 00 1
Q ss_pred CCCCCcccHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCC
Q 025333 205 ETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYE 246 (254)
Q Consensus 205 ~~~neP~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~ 246 (254)
-...-..++.++..+ .-.+++.+++.+.+..|..++|+++
T Consensus 323 -~~g~e~~l~~l~~~~-~~~~lsl~~~~~~~s~npAk~lgl~ 362 (438)
T PRK07575 323 -MPGVETSLPLMLTAA-MRGKCTVAQVVRWMSTAVARAYGIP 362 (438)
T ss_pred -cccHHHHHHHHHHHH-hcCCCCHHHHHHHHhhhHHHHcCCC
Confidence 111223456666655 3457999999999999999999994
No 120
>PRK07627 dihydroorotase; Provisional
Probab=87.58 E-value=11 Score=35.97 Aligned_cols=33 Identities=6% Similarity=0.038 Sum_probs=25.2
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCC
Q 025333 213 IHNVLDYVASLLDMTKEELAELSYRNAIRLFSYE 246 (254)
Q Consensus 213 l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~ 246 (254)
++..+..+ .-.+++.+++.+.+..|..++|++.
T Consensus 333 ~pl~~~~~-~~~~i~~~~~l~~~t~~pA~~lg~~ 365 (425)
T PRK07627 333 LPLTLKWA-DEAKVPLARALARITSAPARVLGLP 365 (425)
T ss_pred HHHHHHHH-HhCCCCHHHHHHHHHHHHHHHhCCC
Confidence 44444433 3457999999999999999999983
No 121
>cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This group contains the archeal members of the DHOase family.
Probab=87.31 E-value=25 Score=32.77 Aligned_cols=153 Identities=17% Similarity=0.160 Sum_probs=85.0
Q ss_pred CHHHHHHHHHHHHHHHHhcCCceEE-eccchHHHHHHHHHhcCC-CCCcEEEEeCCCCHHHHHHHHHCCcEEeecccccc
Q 025333 49 DFMDQVGVFRQQLELAKELKRPASI-HCVRAFGDLLEIMKSVGP-FPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMS 126 (254)
Q Consensus 49 ~~~~Q~~vf~~ql~lA~~~~lPvil-H~~~a~~~~l~il~~~~~-~~~~~IiH~fsg~~e~~~~~l~~G~y~s~~~~~~~ 126 (254)
+...+.....+.+++|+..+.++.| |.-. .+-++++++... ...-+-.|+..-+.+.+. +.|-++=+++.+..
T Consensus 152 P~~aE~~av~r~~~la~~~~~~~hi~Hvs~--~~~~~~i~~~k~~vt~ev~ph~L~l~~~~~~---~~~~~~k~~PPlr~ 226 (361)
T cd01318 152 DAEAAAVATARALKLARRHGARLHICHVST--PEELKLIKKAKPGVTVEVTPHHLFLDVEDYD---RLGTLGKVNPPLRS 226 (361)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCEEEEeCCC--HHHHHHHHHhCCCeEEEeCHHHhhcCHHHHh---cCCCeEEEeCCCCC
Confidence 5667778889999999999998754 5544 335667766531 001123365444444332 34656556664432
Q ss_pred cc-hHHHHHHHHhCCCCcEEEecC-CCCCCchhhhhcccccCCCCCCcccccccccCCCCCCCCCccccccCCCCCCCCC
Q 025333 127 MK-AQKAKKMLKVVPSERILLETD-APDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPK 204 (254)
Q Consensus 127 ~~-~~~~~~~l~~ip~driLlETD-~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 204 (254)
.. .+.+.+.++.- ....+-|| +|+....+.. -.| ... . |
T Consensus 227 ~~d~~aL~~~l~~G--~id~i~SDh~P~~~~~k~~--~~~-~a~--------------~------------G-------- 267 (361)
T cd01318 227 REDRKALLQALADG--RIDVIASDHAPHTLEEKRK--GYP-AAP--------------S------------G-------- 267 (361)
T ss_pred HHHHHHHHHHHhCC--CCCEEeeCCCCCCHHHccC--Chh-hCC--------------C------------C--------
Confidence 11 12344455543 34588999 7874322110 000 000 0 1
Q ss_pred CCCCCcccHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCCC
Q 025333 205 ETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEG 247 (254)
Q Consensus 205 ~~~neP~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~~ 247 (254)
...-...++.+.. +..-.+++++++.+.+..|..++|++++
T Consensus 268 -~~g~e~~l~~~~~-~v~~~~l~l~~a~~~~t~nPA~~lgl~~ 308 (361)
T cd01318 268 -IPGVETALPLMLT-LVNKGILSLSRVVRLTSHNPARIFGIKN 308 (361)
T ss_pred -CccHHHHHHHHHH-HHHcCCCCHHHHHHHHhHHHHHHhCCCC
Confidence 1111122333443 3345689999999999999999999964
No 122
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=86.61 E-value=17 Score=30.29 Aligned_cols=113 Identities=13% Similarity=0.165 Sum_probs=70.1
Q ss_pred ChhHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccchHHHHHHHHHhcCCCCC
Q 025333 15 TPNWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPD 94 (254)
Q Consensus 15 ~~~~l~~l~~ll~~~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a~~~~l~il~~~~~~~~ 94 (254)
..+.++.+.+.++.+ +..| -++. +..+.+.-.+..++..+++++++.+++||.+- ++..+.+. .
T Consensus 11 ~~~~~~~l~~~~~~g-v~~v-----~lR~--k~~~~~~~~~~a~~l~~~~~~~~~~liin~~~------~la~~~~~--d 74 (180)
T PF02581_consen 11 GDDFLEQLEAALAAG-VDLV-----QLRE--KDLSDEELLELARRLAELCQKYGVPLIINDRV------DLALELGA--D 74 (180)
T ss_dssp TCHHHHHHHHHHHTT--SEE-----EEE---SSS-HHHHHHHHHHHHHHHHHTTGCEEEES-H------HHHHHCT---S
T ss_pred cchHHHHHHHHHHCC-CcEE-----EEcC--CCCCccHHHHHHHHHHHHhhcceEEEEecCCH------HHHHhcCC--C
Confidence 345788888888764 2222 1111 12345666788888999999999999999853 45556653 2
Q ss_pred cEEEEeCCCCHHHHHHHHHCCcEEeecccccccchHHHHHHHHhCCCCcEEEec
Q 025333 95 GVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQKAKKMLKVVPSERILLET 148 (254)
Q Consensus 95 ~~IiH~fsg~~e~~~~~l~~G~y~s~~~~~~~~~~~~~~~~l~~ip~driLlET 148 (254)
++++-.-......++..+..+.++|.|.. +.++++++ ...+.|.+++..
T Consensus 75 GvHl~~~~~~~~~~r~~~~~~~~ig~S~h----~~~e~~~a-~~~g~dYv~~gp 123 (180)
T PF02581_consen 75 GVHLGQSDLPPAEARKLLGPDKIIGASCH----SLEEAREA-EELGADYVFLGP 123 (180)
T ss_dssp EEEEBTTSSSHHHHHHHHTTTSEEEEEES----SHHHHHHH-HHCTTSEEEEET
T ss_pred EEEecccccchHHhhhhcccceEEEeecC----cHHHHHHh-hhcCCCEEEECC
Confidence 33332333356667777778899998852 33444444 355779998765
No 123
>PRK06361 hypothetical protein; Provisional
Probab=85.62 E-value=7 Score=33.34 Aligned_cols=127 Identities=17% Similarity=0.185 Sum_probs=79.9
Q ss_pred HHHHHHhcCCc-eEEeccchH-----HHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCcEEeecccc-cccchHHH
Q 025333 60 QLELAKELKRP-ASIHCVRAF-----GDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFL-MSMKAQKA 132 (254)
Q Consensus 60 ql~lA~~~~lP-vilH~~~a~-----~~~l~il~~~~~~~~~~IiH~fsg~~e~~~~~l~~G~y~s~~~~~-~~~~~~~~ 132 (254)
.++...+++.. +++|..... ..-..+++ .+. ..++-|=..-..+.++.+.+.|+|+.++... .......+
T Consensus 77 ~~~~~~~~~~~~~svH~~~~~~~~~~~~~~~a~~-~~~--~dvlaHpd~~~~~~~~~~~~~~~~lEin~~~~~~~~~~~~ 153 (212)
T PRK06361 77 LAKKARDLGAEIVVVHGETIVEPVEEGTNLAAIE-CED--VDILAHPGLITEEEAELAAENGVFLEITARKGHSLTNGHV 153 (212)
T ss_pred HHHHHHHCCCEEEEECCCCcchhhhhhhHHHHHh-CCC--CcEecCcchhhHHHHHHHHHcCeEEEEECCCCcccchHHH
Confidence 33455565544 568854321 11233343 222 2344474334567777888899999998521 11123456
Q ss_pred HHHHHhCCCCcEEEecCCCCCCchhhhhcccccCCCCCCcccccccccCCCCCCCCCccccccCCCCCCCCCCCCCCccc
Q 025333 133 KKMLKVVPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPAN 212 (254)
Q Consensus 133 ~~~l~~ip~driLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~neP~~ 212 (254)
.+++++.+.. +++-||+.. |. +...
T Consensus 154 l~~a~~~gi~-vv~~SDaH~--~~----------------------------------------------------d~~~ 178 (212)
T PRK06361 154 ARIAREAGAP-LVINTDTHA--PS----------------------------------------------------DLIT 178 (212)
T ss_pred HHHHHHhCCc-EEEECCCCC--HH----------------------------------------------------HHHH
Confidence 6777777765 899999972 21 1112
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCC
Q 025333 213 IHNVLDYVASLLDMTKEELAELSYRNAIRLFSY 245 (254)
Q Consensus 213 l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~ 245 (254)
.+.+..+++-.|++.++|...+.+|..++.+.
T Consensus 179 -~~~~~~i~~~~gl~~~~v~~~~~~~~~~~~~~ 210 (212)
T PRK06361 179 -YEFARKVALGAGLTEKELEEALENNPKLLLKR 210 (212)
T ss_pred -HHHHHHHHcCCCCCHHHHHHHHHHhHHHHHHh
Confidence 35677888999999999999999999998764
No 124
>PRK09060 dihydroorotase; Validated
Probab=82.65 E-value=31 Score=33.09 Aligned_cols=154 Identities=16% Similarity=0.140 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHHHHHHHhcCCceEEeccchHHHHHHHHHhcCCC-CCcEEEEeCCCCHHHHHHHHHCCcEEeeccccccc
Q 025333 49 DFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPF-PDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSM 127 (254)
Q Consensus 49 ~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a~~~~l~il~~~~~~-~~~~IiH~fsg~~e~~~~~l~~G~y~s~~~~~~~~ 127 (254)
+...+.....+.+++|++.|.||.+|-.... +-++++++.+.. ..-+..|+..-+.+. .+-+.|.+.-+++.+...
T Consensus 208 p~~aE~~av~~~~~la~~~~~~lhi~h~st~-~~v~~i~~~~~~vt~ev~ph~l~l~~~~--~~~~~~~~~k~~PPlr~~ 284 (444)
T PRK09060 208 DEEAALLATRRLVRLARETGRRIHVLHVSTA-EEIDFLADHKDVATVEVTPHHLTLAAPE--CYERLGTLAQMNPPIRDA 284 (444)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCEEEEeCCCH-HHHHHHHHhCCCeEEEeChHHhccCchh--hcccCCceEEEeCCCCCH
Confidence 4456778888999999999999955544443 334445444321 011112433222221 012356677777654321
Q ss_pred c-hHHHHHHHHhCCCCcEEEecCC-CCCCchhhhhcccccCCCCCCcccccccccCCCCCCCCCccccccCCCCCCCCCC
Q 025333 128 K-AQKAKKMLKVVPSERILLETDA-PDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKE 205 (254)
Q Consensus 128 ~-~~~~~~~l~~ip~driLlETD~-P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 205 (254)
+ .+.+.+.++.--. .+ +-||. |+..... . ..|.+.. + |
T Consensus 285 ~~~~~l~~al~~G~i-d~-i~sDh~p~~~~~k-~--~~~~~~~------------------~--------G--------- 324 (444)
T PRK09060 285 RHRDGLWRGVRQGVV-DV-LGSDHAPHTLEEK-A--KPYPASP------------------S--------G--------- 324 (444)
T ss_pred HHHHHHHHHHhCCCc-cE-EecCCCCCCHHHh-c--CCcccCC------------------C--------C---------
Confidence 1 1234445554323 33 78885 4321100 0 0000000 0 1
Q ss_pred CCCCcccHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCC
Q 025333 206 TLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYE 246 (254)
Q Consensus 206 ~~neP~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~ 246 (254)
...--..++-.+..+ ....++.+.+.+.+..|..++|+++
T Consensus 325 ~~g~e~~~~l~~~~v-~~g~l~~~~~~~~~s~~pa~~~gl~ 364 (444)
T PRK09060 325 MTGVQTLVPIMLDHV-NAGRLSLERFVDLTSAGPARIFGIA 364 (444)
T ss_pred cccHHHHHHHHHHHH-HcCCCCHHHHHHHHhHhHHHHhCCC
Confidence 001112344444433 3345999999999999999999994
No 125
>PRK02382 dihydroorotase; Provisional
Probab=81.64 E-value=30 Score=33.04 Aligned_cols=152 Identities=16% Similarity=0.160 Sum_probs=82.1
Q ss_pred CHHHHHHHHHHHHHHHHhcCCceEEeccc-hHHHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCcEEeeccccccc
Q 025333 49 DFMDQVGVFRQQLELAKELKRPASIHCVR-AFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSM 127 (254)
Q Consensus 49 ~~~~Q~~vf~~ql~lA~~~~lPvilH~~~-a~~~~l~il~~~~~~~~~~IiH~fsg~~e~~~~~l~~G~y~s~~~~~~~~ 127 (254)
+...+.....+.+++|++.|.++ |... +..+-++++++... ...+..|+..-+.+.+. ..|.++-+++.+...
T Consensus 208 p~~~E~~av~~~~~la~~~g~~~--hi~h~ss~~~~~~i~~~~v-t~ev~ph~L~l~~~~~~---~~~~~~k~~PPlr~~ 281 (443)
T PRK02382 208 PAAAEAAAVERALEVASETGARI--HIAHISTPEGVDAARREGI-TCEVTPHHLFLSRRDWE---RLGTFGKMNPPLRSE 281 (443)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCE--EEEECCCHHHHHHHHHCCc-EEEEchhhhhcCHHHHh---ccCceEEEcCCCCCh
Confidence 45667777889999999999885 4443 23455566766531 12344575544444332 246555666644322
Q ss_pred c-hHHHHHHHHhCCCCcEEEecCC-CCCCchhhhhcccccCCCCCCcccccccccCCCCCCCCCccccccCCCCCCCCCC
Q 025333 128 K-AQKAKKMLKVVPSERILLETDA-PDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKE 205 (254)
Q Consensus 128 ~-~~~~~~~l~~ip~driLlETD~-P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 205 (254)
. .+.+.+.++.--.| .+-||. |+. ..... ..+| +.. . |
T Consensus 282 ~d~~aL~~~l~~g~i~--~i~sDh~P~~-~~~K~-~~~~-~~~--------------~------------G--------- 321 (443)
T PRK02382 282 KRREALWERLNDGTID--VVASDHAPHT-REEKD-ADIW-DAP--------------S------------G--------- 321 (443)
T ss_pred HHHHHHHHHHhCCCCC--EEEcCCCCCC-HHHhc-CChh-hCC--------------C------------C---------
Confidence 1 12233444442222 367886 321 11000 0000 000 0 1
Q ss_pred CCCCcccHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCCC
Q 025333 206 TLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEG 247 (254)
Q Consensus 206 ~~neP~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~~ 247 (254)
...--..++.++.. ..-.+++.+++.+.++.|..++|++++
T Consensus 322 ~~g~e~~~~~~~~~-~~~~~~~l~~~~~~~t~~pA~~~g~~~ 362 (443)
T PRK02382 322 VPGVETMLPLLLAA-VRKNRLPLERVRDVTAANPARIFGLDG 362 (443)
T ss_pred cccHHHHHHHHHHH-HHcCCCCHHHHHHHHhHHHHHHcCCCC
Confidence 11111356666643 355689999999999999999999953
No 126
>TIGR01431 adm_rel adenosine deaminase-related growth factor. Members of this family have been described as secreted proteins with growth factor activity and regions of adenosine deaminase homology in insects, mollusks, and vertebrates.
Probab=81.32 E-value=7 Score=38.21 Aligned_cols=94 Identities=12% Similarity=0.133 Sum_probs=58.8
Q ss_pred HHHHHHHHH-HHHhcCCceEEeccchH-------HHHHHHHHhcCCCCCcEEEEeCCC--CHHHHHHHHHCCcEEeeccc
Q 025333 54 VGVFRQQLE-LAKELKRPASIHCVRAF-------GDLLEIMKSVGPFPDGVIIHSYLG--SAEMVPELSKLGAYFSFSGF 123 (254)
Q Consensus 54 ~~vf~~ql~-lA~~~~lPvilH~~~a~-------~~~l~il~~~~~~~~~~IiH~fsg--~~e~~~~~l~~G~y~s~~~~ 123 (254)
..-|..++. ++++.|+|+.+|+.... +.+.+.+ ..+. .| |=|+|.- .++.++.+.+.++-+-+.+.
T Consensus 305 l~~f~~~~~~~~~~~gl~~t~HAGE~~~~g~~~d~nl~dAI-lLg~--~R-IGHG~~l~~~P~l~~~vke~~I~lEvCP~ 380 (479)
T TIGR01431 305 LLDFIDALLGPSDKEKLPYFFHAGETNWQGTTVDENLIDAL-LLNT--TR-IGHGFALVKHPLVLQMLKERNIAVEVNPI 380 (479)
T ss_pred HHHHHHHHHHHHHhCCCCEEEecCCcCCCCCCchhHHHHHH-HcCC--cc-ccCcccccCCHHHHHHHHHhCCeEEECcc
Confidence 345555655 55569999999999642 4566666 4553 33 5688864 47788888888887777653
Q ss_pred cc-------ccchHHHHHHHHhCCCCcEEEecCCCCC
Q 025333 124 LM-------SMKAQKAKKMLKVVPSERILLETDAPDA 153 (254)
Q Consensus 124 ~~-------~~~~~~~~~~l~~ip~driLlETD~P~~ 153 (254)
-. ..+.--++.+++. + =.+.+.||.|-.
T Consensus 381 SN~~l~~v~~~~~HPl~~lla~-G-vpv~InSDDP~~ 415 (479)
T TIGR01431 381 SNQVLQLVADLRNHPCAYLFAD-N-YPMVISSDDPAF 415 (479)
T ss_pred chhhhcccCCcccChHHHHHHC-C-CcEEEeCCCccc
Confidence 10 0111113344443 2 268999999954
No 127
>cd01316 CAD_DHOase The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis. Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate.
Probab=79.74 E-value=29 Score=32.23 Aligned_cols=38 Identities=16% Similarity=0.155 Sum_probs=29.9
Q ss_pred CcccHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCCC
Q 025333 209 HPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEG 247 (254)
Q Consensus 209 eP~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~~ 247 (254)
-...++-++.. ..-++++.+.+.+.+..|..++||+..
T Consensus 245 ~e~~lpl~~~~-v~~~~i~l~~l~~~~s~nPAk~~gl~~ 282 (344)
T cd01316 245 VETSLPLLLTA-VHEGRLTIEDIVDRLHTNPKRIFNLPP 282 (344)
T ss_pred HHHHHHHHHHH-HHcCCCCHHHHHHHHHHhHHHHhCCCC
Confidence 34566666653 344579999999999999999999964
No 128
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=79.74 E-value=42 Score=29.42 Aligned_cols=126 Identities=14% Similarity=0.223 Sum_probs=67.3
Q ss_pred cCChhHHHHHHHHhhcCCceEEEe----ecCCCCCC-CCCCCHHHHHHHHHHHHHHHHhcCCceE-Eeccc---------
Q 025333 13 ERTPNWFSTLKEFFEITPAAAVGE----IGLDKGSK-GREIDFMDQVGVFRQQLELAKELKRPAS-IHCVR--------- 77 (254)
Q Consensus 13 ~~~~~~l~~l~~ll~~~~~~aIGE----iGLD~~~~-~~~~~~~~Q~~vf~~ql~lA~~~~lPvi-lH~~~--------- 77 (254)
..+...++.+.+++++..+..++= .|..+... ......+...+.+++.+++|+.+|.+.+ +|...
T Consensus 43 ~~~~~~~~~l~~~~~~~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~ 122 (275)
T PRK09856 43 DLKAGGIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPPNV 122 (275)
T ss_pred ccCchHHHHHHHHHHHcCCeEEEecCcccCcCccccCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCHHH
Confidence 334456888888887765433331 12222211 1111234567899999999999999975 55431
Q ss_pred -------hHHHHHHHHHhcCCCCCcEEEEe---C----CCCHHHHHHHHHC------CcEEeecccccccchHHHHHHHH
Q 025333 78 -------AFGDLLEIMKSVGPFPDGVIIHS---Y----LGSAEMVPELSKL------GAYFSFSGFLMSMKAQKAKKMLK 137 (254)
Q Consensus 78 -------a~~~~l~il~~~~~~~~~~IiH~---f----sg~~e~~~~~l~~------G~y~s~~~~~~~~~~~~~~~~l~ 137 (254)
....+.++.++.| .++.+|. + -.+.+.+.++++. |+++.+.-. +.......+.++
T Consensus 123 ~~~~~~~~l~~l~~~a~~~g---v~l~iE~~~~~~~~~~~t~~~~~~l~~~~~~~~v~~~~D~~h~--~~~~~~~~~~i~ 197 (275)
T PRK09856 123 IWGRLAENLSELCEYAENIG---MDLILEPLTPYESNVVCNANDVLHALALVPSPRLFSMVDICAP--YVQAEPVMSYFD 197 (275)
T ss_pred HHHHHHHHHHHHHHHHHHcC---CEEEEecCCCCcccccCCHHHHHHHHHHcCCCcceeEEeecch--hcCCCCHHHHHH
Confidence 1233444555554 2455553 1 2346666666652 455655432 112234556666
Q ss_pred hCCCCcE
Q 025333 138 VVPSERI 144 (254)
Q Consensus 138 ~ip~dri 144 (254)
.++ +||
T Consensus 198 ~~~-~rI 203 (275)
T PRK09856 198 KLG-DKL 203 (275)
T ss_pred HhC-CcE
Confidence 654 453
No 129
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=79.71 E-value=35 Score=28.47 Aligned_cols=109 Identities=12% Similarity=0.131 Sum_probs=68.5
Q ss_pred hHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccchHHHHHHHHHhcCCCCCcE
Q 025333 17 NWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGV 96 (254)
Q Consensus 17 ~~l~~l~~ll~~~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a~~~~l~il~~~~~~~~~~ 96 (254)
+.++.+++.++.+ +.+| =|.. ...+...+.+.+.+...++++++.|+++|.. .++..+.+. .++
T Consensus 14 ~~~~~~~~~~~~g-~~~v---~lR~----~~~~~~~~~~~~~~l~~~~~~~~~~l~i~~~------~~la~~~g~--~Gv 77 (196)
T TIGR00693 14 DLLNRVEAALKGG-VTLV---QLRD----KGSNTRERLALAEKLQELCRRYGVPFIVNDR------VDLALALGA--DGV 77 (196)
T ss_pred cHHHHHHHHHhcC-CCEE---EEec----CCCCHHHHHHHHHHHHHHHHHhCCeEEEECH------HHHHHHcCC--CEE
Confidence 4567777777754 3344 1211 1234567788999999999999999999973 356666653 233
Q ss_pred EEEeCCCCHHHHHHHHHCCcEEeecccccccchHHHHHHHHhCCCCcEEE
Q 025333 97 IIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQKAKKMLKVVPSERILL 146 (254)
Q Consensus 97 IiH~fsg~~e~~~~~l~~G~y~s~~~~~~~~~~~~~~~~l~~ip~driLl 146 (254)
++-....+.+.++..+..+..++++.. +..+..+ ..+.+.|.+++
T Consensus 78 Hl~~~~~~~~~~r~~~~~~~~ig~s~h----~~~e~~~-a~~~g~dyi~~ 122 (196)
T TIGR00693 78 HLGQDDLPASEARALLGPDKIIGVSTH----NLEELAE-AEAEGADYIGF 122 (196)
T ss_pred ecCcccCCHHHHHHhcCCCCEEEEeCC----CHHHHHH-HhHcCCCEEEE
Confidence 331222345666777777788887642 3455555 34458899887
No 130
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=79.63 E-value=27 Score=31.55 Aligned_cols=97 Identities=12% Similarity=0.146 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHhcCCceEEeccchHHHHHHHHHhcCCCCCcEEEEeC-CCCHHHHHHHHHCC-c-EEeeccc-c-cc
Q 025333 52 DQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSY-LGSAEMVPELSKLG-A-YFSFSGF-L-MS 126 (254)
Q Consensus 52 ~Q~~vf~~ql~lA~~~~lPvilH~~~a~~~~l~il~~~~~~~~~~IiH~f-sg~~e~~~~~l~~G-~-y~s~~~~-~-~~ 126 (254)
.-...+++.++..++.+.|+++|+.+....+++.+.+.+. . ++|+- .-+...+++.+..+ + .=++... . ..
T Consensus 205 ~~~p~~k~i~~~i~~~g~~~~lH~cG~~~~~~~~l~~~~~--d--~~~~d~~~dl~~~~~~~g~~~~i~G~id~~~~l~~ 280 (330)
T cd03465 205 FSLPYLKKVFDAIKALGGPVIHHNCGDTAPILELMADLGA--D--VFSIDVTVDLAEAKKKVGDKACLMGNLDPIDVLLN 280 (330)
T ss_pred HhhHHHHHHHHHHHHcCCceEEEECCCchhHHHHHHHhCC--C--eEeecccCCHHHHHHHhCCceEEEeCcChHHhhcC
Confidence 3355667888888888999999999988888999988864 2 34422 23666777666421 1 1122221 1 11
Q ss_pred cch----HHHHHHHHhCCC--CcEEEecCCCC
Q 025333 127 MKA----QKAKKMLKVVPS--ERILLETDAPD 152 (254)
Q Consensus 127 ~~~----~~~~~~l~~ip~--driLlETD~P~ 152 (254)
-+. ++++++++.... .++++-+++.-
T Consensus 281 gt~eei~~~v~~~l~~~~~~~~~~il~~gc~i 312 (330)
T cd03465 281 GSPEEIKEEVKELLEKLLKGGGGYILSSGCEI 312 (330)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCEEEeCCCCC
Confidence 122 335667777644 78999998853
No 131
>PRK01060 endonuclease IV; Provisional
Probab=78.59 E-value=46 Score=29.28 Aligned_cols=68 Identities=9% Similarity=-0.104 Sum_probs=41.0
Q ss_pred cccccCChhHHHHHHHHhhcCCce--EE-EeecCCCCCCC-CCCCHHHHHHHHHHHHHHHHhcCCc-eEEecc
Q 025333 9 RFVQERTPNWFSTLKEFFEITPAA--AV-GEIGLDKGSKG-REIDFMDQVGVFRQQLELAKELKRP-ASIHCV 76 (254)
Q Consensus 9 ~~~~~~~~~~l~~l~~ll~~~~~~--aI-GEiGLD~~~~~-~~~~~~~Q~~vf~~ql~lA~~~~lP-vilH~~ 76 (254)
|.....+++.++.+++++++..+. ++ ........... .+...+.-.+.+++.+++|.++|.+ |++|..
T Consensus 39 ~~~~~~~~~~~~~lk~~~~~~gl~~~~~~~h~~~~~nl~~~d~~~r~~s~~~~~~~i~~A~~lga~~vv~h~G 111 (281)
T PRK01060 39 WKRKPLEELNIEAFKAACEKYGISPEDILVHAPYLINLGNPNKEILEKSRDFLIQEIERCAALGAKLLVFHPG 111 (281)
T ss_pred CcCCCCCHHHHHHHHHHHHHcCCCCCceEEecceEecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 333355777888999988776442 12 11111111110 1112345677899999999999999 568875
No 132
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=77.16 E-value=24 Score=31.03 Aligned_cols=63 Identities=10% Similarity=0.028 Sum_probs=39.7
Q ss_pred cCChhHHHHHHHHhhcCCc--eEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCc-eEEecc
Q 025333 13 ERTPNWFSTLKEFFEITPA--AAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRP-ASIHCV 76 (254)
Q Consensus 13 ~~~~~~l~~l~~ll~~~~~--~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lP-vilH~~ 76 (254)
..+++.++.+.+++++..+ .+.|-..++.... .+..++...+.+++.+++|+++|.+ |++|..
T Consensus 41 ~~~~~~~~~l~~~~~~~gl~ls~h~p~~~nl~s~-d~~~r~~~~~~l~~~i~~A~~lGa~~vv~h~g 106 (273)
T smart00518 41 RLSEETAEKFKEALKENNIDVSVHAPYLINLASP-DKEKVEKSIERLIDEIKRCEELGIKALVFHPG 106 (273)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCceecCCCC-CHHHHHHHHHHHHHHHHHHHHcCCCEEEEccc
Confidence 4567778899988876543 2222111222111 1122456678899999999999998 667874
No 133
>KOG2902 consensus Dihydroorotase [Nucleotide transport and metabolism]
Probab=76.93 E-value=33 Score=30.95 Aligned_cols=49 Identities=10% Similarity=0.029 Sum_probs=30.0
Q ss_pred CCCCCCCCcccHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCCC----Ccccc
Q 025333 202 LPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEG----SKILT 252 (254)
Q Consensus 202 ~~~~~~neP~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~~----~~~~~ 252 (254)
.|.+-...|-.+...++..-+.. ..+.+..-+.-|-..||++++ +||+-
T Consensus 259 ~cAGvysqpfA~sy~A~VFde~g--aLd~Lk~F~s~fG~~FY~~p~e~~sS~I~l 311 (344)
T KOG2902|consen 259 GCAGVYSQPFALSYYAKVFDEAG--ALDKLKAFTSFFGPDFYGLPDERNSSKITL 311 (344)
T ss_pred CcceeecccchHHHHHHHHhhhc--hHHHHhhhHhhcCcceecccccccccceee
Confidence 34445666666666555443322 356677777778888888873 66654
No 134
>COG1820 NagA N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]
Probab=76.84 E-value=51 Score=31.35 Aligned_cols=37 Identities=5% Similarity=0.146 Sum_probs=31.5
Q ss_pred cHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCCCC
Q 025333 212 NIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEGS 248 (254)
Q Consensus 212 ~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~~~ 248 (254)
.+..-++-+.+..+++.+|..+....|..+.+++.+.
T Consensus 311 tm~~avrn~v~~~~~~~~eAv~maS~~PA~~lgl~~~ 347 (380)
T COG1820 311 TMDEAVRNLVEWGGISLAEAVRMASLNPAKALGLDDR 347 (380)
T ss_pred eHHHHHHHHHHHhCCCHHHHHHHhhhhHHHHhCCcCc
Confidence 4566677777888999999999999999999998764
No 135
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=74.56 E-value=10 Score=33.65 Aligned_cols=103 Identities=16% Similarity=0.181 Sum_probs=52.8
Q ss_pred CChhHHHHHHHHhhcCCceEEE------------eecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccch---
Q 025333 14 RTPNWFSTLKEFFEITPAAAVG------------EIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRA--- 78 (254)
Q Consensus 14 ~~~~~l~~l~~ll~~~~~~aIG------------EiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a--- 78 (254)
.+.+++.+|.+++++..+.++- +.|.+++.. .+.+. .-...|+.+.+.|+||+|=+..+
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KI---aS~dl---~n~~lL~~~A~tgkPvIlSTG~stl~ 126 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKI---ASGDL---TNLPLLEYIAKTGKPVILSTGMSTLE 126 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE----GGGT---T-HHHHHHHHTT-S-EEEE-TT--HH
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEe---ccccc---cCHHHHHHHHHhCCcEEEECCCCCHH
Confidence 4677888888888764433221 112222210 00011 12346777888999999999975
Q ss_pred -HHHHHHHHHhcCCCCCcEEEEeCCCC--------HHHHHHHH-HCCcEEeeccc
Q 025333 79 -FGDLLEIMKSVGPFPDGVIIHSYLGS--------AEMVPELS-KLGAYFSFSGF 123 (254)
Q Consensus 79 -~~~~l~il~~~~~~~~~~IiH~fsg~--------~e~~~~~l-~~G~y~s~~~~ 123 (254)
.++.++++++.+.. .-+++||.++- ...+..+. ..|+=+|+|.-
T Consensus 127 EI~~Av~~~~~~~~~-~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~~~vG~SDH 180 (241)
T PF03102_consen 127 EIERAVEVLREAGNE-DLVLLHCVSSYPTPPEDVNLRVIPTLKERFGVPVGYSDH 180 (241)
T ss_dssp HHHHHHHHHHHHCT---EEEEEE-SSSS--GGG--TTHHHHHHHHSTSEEEEEE-
T ss_pred HHHHHHHHHHhcCCC-CEEEEecCCCCCCChHHcChHHHHHHHHhcCCCEEeCCC
Confidence 34566777555542 33567999863 22333333 25888898864
No 136
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=73.40 E-value=62 Score=28.19 Aligned_cols=110 Identities=14% Similarity=0.056 Sum_probs=67.2
Q ss_pred hHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccchHHHHHHHHHhcCCCCCcE
Q 025333 17 NWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGV 96 (254)
Q Consensus 17 ~~l~~l~~ll~~~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a~~~~l~il~~~~~~~~~~ 96 (254)
..++.+++.+..+.+.+| -++. +..+.+...+..++..++++++|.|++|+.+ +++....+- .+
T Consensus 27 ~~~~~l~~al~~G~v~~v-----QlR~--K~l~~~~~~~~a~~l~~l~~~~gv~liINd~------~dlA~~~~a--dG- 90 (221)
T PRK06512 27 ELAKLLRAALQGGDVASV-----ILPQ--YGLDEATFQKQAEKLVPVIQEAGAAALIAGD------SRIAGRVKA--DG- 90 (221)
T ss_pred cHHHHHHHHHcCCCccEE-----EEeC--CCCCHHHHHHHHHHHHHHHHHhCCEEEEeCH------HHHHHHhCC--CE-
Confidence 456777777765422222 2222 2235567778888999999999999999965 455555543 22
Q ss_pred EEEeCC--CCHHHHHHHHHCCcEEeecccccccchHHHHHHHHhCCCCcEEEe
Q 025333 97 IIHSYL--GSAEMVPELSKLGAYFSFSGFLMSMKAQKAKKMLKVVPSERILLE 147 (254)
Q Consensus 97 IiH~fs--g~~e~~~~~l~~G~y~s~~~~~~~~~~~~~~~~l~~ip~driLlE 147 (254)
+|--. .+...+++.+..+.++|++.. . +.....++ .+.+.|.|.+.
T Consensus 91 -VHLg~~d~~~~~~r~~~~~~~iiG~s~~-~--s~~~a~~A-~~~gaDYv~~G 138 (221)
T PRK06512 91 -LHIEGNLAALAEAIEKHAPKMIVGFGNL-R--DRHGAMEI-GELRPDYLFFG 138 (221)
T ss_pred -EEECccccCHHHHHHhcCCCCEEEecCC-C--CHHHHHHh-hhcCCCEEEEC
Confidence 35321 245666666666788888632 1 22334443 35688999886
No 137
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=72.89 E-value=41 Score=31.62 Aligned_cols=99 Identities=14% Similarity=0.101 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHhcCCceEEeccchHHHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCcEE--eeccc-ccccch-
Q 025333 54 VGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYF--SFSGF-LMSMKA- 129 (254)
Q Consensus 54 ~~vf~~ql~lA~~~~lPvilH~~~a~~~~l~il~~~~~~~~~~IiH~fsg~~e~~~~~l~~G~y~--s~~~~-~~~~~~- 129 (254)
...+++.++-.++.|.|+++|..+.+..+++.+.+.+. ..++.+..+.+...+++.+....-+ .+++. +..-+.
T Consensus 254 ~P~~k~i~~~i~~~g~~~ilh~cG~~~~~l~~l~~~g~--~~v~~~~~~~dl~~ak~~~g~~~~i~GNl~p~~L~~Gt~e 331 (378)
T cd03308 254 WPSFKKVVEGLAARGQRIFLFFEGDWERYLEYLQELPK--GKTVGLFEYGDPKKVKEKLGDKKCIAGGFPTTLLKYGTPE 331 (378)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcHHHHHHHHhcCC--CcEEEcCCCCCHHHHHHHhCCCEEEEcCCCCHHHhcCCHH
Confidence 34456777777777899999999999888999988764 2245554456777777776532111 12221 111122
Q ss_pred ---HHHHHHHHhCC-CCcEEEecCCCCCC
Q 025333 130 ---QKAKKMLKVVP-SERILLETDAPDAL 154 (254)
Q Consensus 130 ---~~~~~~l~~ip-~driLlETD~P~~~ 154 (254)
+..+++++... .....+-+++...+
T Consensus 332 ~i~~~v~~~l~~~~~~~gfIl~~gcgi~p 360 (378)
T cd03308 332 ECIDYVKELLDTLAPGGGFIFGTDKPIIS 360 (378)
T ss_pred HHHHHHHHHHHHhCCCCCEEEeCCCcCCC
Confidence 34567777765 56799999987654
No 138
>TIGR03178 allantoinase allantoinase. This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases.
Probab=72.45 E-value=26 Score=33.38 Aligned_cols=24 Identities=8% Similarity=-0.021 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhcCCceEEeccc
Q 025333 54 VGVFRQQLELAKELKRPASIHCVR 77 (254)
Q Consensus 54 ~~vf~~ql~lA~~~~lPvilH~~~ 77 (254)
...+.+.++.|+++|+++.+|+..
T Consensus 160 ~~~l~~~~~~a~~~g~~v~~H~E~ 183 (443)
T TIGR03178 160 DWQLYKGMRELARLGQLLLVHAEN 183 (443)
T ss_pred HHHHHHHHHHHHhcCCeEEEeccC
Confidence 356778889999999999999886
No 139
>KOG1097 consensus Adenine deaminase/adenosine deaminase [Nucleotide transport and metabolism]
Probab=72.43 E-value=93 Score=29.82 Aligned_cols=85 Identities=18% Similarity=0.206 Sum_probs=51.5
Q ss_pred CceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccch---HHHHHHHHHhcCCCCCcEEEEeCC--CC
Q 025333 30 PAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRA---FGDLLEIMKSVGPFPDGVIIHSYL--GS 104 (254)
Q Consensus 30 ~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a---~~~~l~il~~~~~~~~~~IiH~fs--g~ 104 (254)
+...|| |||+-.... ..-...|...+..|.+.|+.+-+||... ...+-++|.-.+. .| |=|+|. -.
T Consensus 208 ~~~VvG-idL~G~e~~-----~~p~~~f~~vl~~~~~~gi~~t~HaGE~~~~~~~v~~~LD~l~~--~R-IGHG~~l~~d 278 (399)
T KOG1097|consen 208 PNFVVG-IDLVGQEDL-----GGPLSLFLEVLAKAPAKGIHLTFHAGETNGGASVVKNALDLLGT--ER-IGHGYFLTKD 278 (399)
T ss_pred CCeEEE-EecCCCCCC-----CCChhhhHHHHHhhhhcCCcEEEEccccCCChHHHHHHHHhhCC--cc-ccCceeccCC
Confidence 334454 667655421 1223556666666777999999999963 3333444442222 33 568775 34
Q ss_pred HHHHHHHHHCCcEEeeccc
Q 025333 105 AEMVPELSKLGAYFSFSGF 123 (254)
Q Consensus 105 ~e~~~~~l~~G~y~s~~~~ 123 (254)
++..+.+...++.+-+-+.
T Consensus 279 p~L~~~~k~~nI~lEiCP~ 297 (399)
T KOG1097|consen 279 PELINLLKSRNIALEICPI 297 (399)
T ss_pred HHHHHHHHhcCceEEEccc
Confidence 5557777788998887653
No 140
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=72.29 E-value=65 Score=28.70 Aligned_cols=95 Identities=15% Similarity=0.150 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHhcCCceEEeccchHHHHHHHHHhcCCCCCcEEEE-eCC-CCHHHHHHHHHCC--cEEeecccccccch
Q 025333 54 VGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIH-SYL-GSAEMVPELSKLG--AYFSFSGFLMSMKA 129 (254)
Q Consensus 54 ~~vf~~ql~lA~~~~lPvilH~~~a~~~~l~il~~~~~~~~~~IiH-~fs-g~~e~~~~~l~~G--~y~s~~~~~~~~~~ 129 (254)
...+++.++..+..+.|+++|+.+....+++.+.+.+. . ++| .++ ++...+.+.+..+ +.-++.........
T Consensus 185 ~p~~k~i~~~i~~~~~~~~lH~cg~~~~~~~~l~~~~~--d--~~~~d~~~~d~~~~~~~~~~~~~i~Ggv~~~~~~~~~ 260 (306)
T cd00465 185 LPAYKKVAEYKAAGEVPIVHHSCYDAADLLEEMIQLGV--D--VISFDMTVNEPKEAIEKVGEKKTLVGGVDPGYLPATD 260 (306)
T ss_pred HHHHHHHHHHHhhcCCceEEEECCCHHHHHHHHHHhCc--c--eEecccccCCHHHHHHHhCCCEEEECCCCccccCCCH
Confidence 45556666655566889999998877778888887753 1 333 221 2444444443322 12222221111122
Q ss_pred ----HHHHHHHHhCCCCcEEEecCCCCC
Q 025333 130 ----QKAKKMLKVVPSERILLETDAPDA 153 (254)
Q Consensus 130 ----~~~~~~l~~ip~driLlETD~P~~ 153 (254)
++.+++++.++. ++.+-+|+...
T Consensus 261 e~i~~~v~~~l~~~~~-~~il~~~cgi~ 287 (306)
T cd00465 261 EECIAKVEELVERLGP-HYIINPDCGLG 287 (306)
T ss_pred HHHHHHHHHHHHHhCC-CeEEeCCCCCC
Confidence 335667777764 89999999654
No 141
>PRK04326 methionine synthase; Provisional
Probab=72.02 E-value=79 Score=28.83 Aligned_cols=99 Identities=13% Similarity=0.168 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHH-hcCCceEEecc-chHHHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHC--CcEEeeccccc---
Q 025333 53 QVGVFRQQLELAK-ELKRPASIHCV-RAFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKL--GAYFSFSGFLM--- 125 (254)
Q Consensus 53 Q~~vf~~ql~lA~-~~~lPvilH~~-~a~~~~l~il~~~~~~~~~~IiH~fsg~~e~~~~~l~~--G~y~s~~~~~~--- 125 (254)
+.+.+...+..+. ..+..+.+|+- +....+++.+.+.+. ..+.+-..++..+.+..+.+. |-.+.++-.-.
T Consensus 191 ~~~~~~~~l~~~~~~~~~~v~lH~C~G~~~~~~~~l~~~~v--d~i~~d~~~~~~~~l~~~~~~~~~~~l~~Gvv~~~~~ 268 (330)
T PRK04326 191 DVEIAVEALNRIVKGINAKLGLHVCYGDYSRIAPYILEFPV--DQFDLEFANGNYKLLDLLKEYGFDKELGLGVIDVHSA 268 (330)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEEeCCCcHHHHHHHHhCCC--CEEEEEeCCCCchhHHHhhccCCCCeEEeEEEeCCCC
Confidence 3355545544433 34678899987 667778888877754 233344444444455555554 43333322111
Q ss_pred c-cch----HHHHHHHHhCCCCcEEEecCCCCC
Q 025333 126 S-MKA----QKAKKMLKVVPSERILLETDAPDA 153 (254)
Q Consensus 126 ~-~~~----~~~~~~l~~ip~driLlETD~P~~ 153 (254)
. .+. .+++++++.++.+++++-+||.+.
T Consensus 269 ~~~~~e~v~~~v~~~~~~~~~~~~~lsp~Cgl~ 301 (330)
T PRK04326 269 RVESVEEIKEAIKKGLEYVPPEKLYINPDCGLK 301 (330)
T ss_pred CCCCHHHHHHHHHHHHHhCChhhEEECCCCCCC
Confidence 1 112 335567776788999999999864
No 142
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=71.37 E-value=28 Score=31.90 Aligned_cols=25 Identities=24% Similarity=0.080 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhcCCceEEeccc
Q 025333 53 QVGVFRQQLELAKELKRPASIHCVR 77 (254)
Q Consensus 53 Q~~vf~~ql~lA~~~~lPvilH~~~ 77 (254)
-.+-+++.-++++++|.++++|...
T Consensus 89 ~~~~~~~~g~~~~~~~irls~Hp~y 113 (303)
T PRK02308 89 FKEELREIGEFIKEHNIRLSFHPDQ 113 (303)
T ss_pred CHHHHHHHHHHHHHcCCCeeccChh
Confidence 3466777778888999999999664
No 143
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=70.16 E-value=25 Score=32.72 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhcCCceEEeccc
Q 025333 55 GVFRQQLELAKELKRPASIHCVR 77 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~ 77 (254)
..+.+.++.++++|.||++|+.+
T Consensus 120 ~~l~~~~~~~~~~g~~v~~H~E~ 142 (374)
T cd01317 120 ELLRRALEYAAMLDLPIIVHPED 142 (374)
T ss_pred HHHHHHHHHHHhcCCeEEEecCC
Confidence 34667788899999999999975
No 144
>PRK08392 hypothetical protein; Provisional
Probab=69.42 E-value=72 Score=27.30 Aligned_cols=108 Identities=15% Similarity=0.111 Sum_probs=57.9
Q ss_pred eccccccccCChhHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccchHHHHHH
Q 025333 5 CFIFRFVQERTPNWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLE 84 (254)
Q Consensus 5 G~HP~~~~~~~~~~l~~l~~ll~~~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a~~~~l~ 84 (254)
++|-|+........++.+.+.++.+.+..+|=.++.+...+ . ...+.+++.++.|++.|+++=|-++..
T Consensus 92 SvH~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~--~---~~~~~~~~i~~~~~~~g~~lEiNt~~~------ 160 (215)
T PRK08392 92 SVHEWFGRPEHHEYIELVKLALMDENVDIIGHFGNSFPYIG--Y---PSEEELKEILDLAEAYGKAFEISSRYR------ 160 (215)
T ss_pred EeecCcCCcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCC--C---chHHHHHHHHHHHHHhCCEEEEeCCCC------
Confidence 66654322222345666666666666666776554432111 1 123445677777777777776665210
Q ss_pred HHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCcEEeeccccccc----chHHHHHHHHhCC
Q 025333 85 IMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSM----KAQKAKKMLKVVP 140 (254)
Q Consensus 85 il~~~~~~~~~~IiH~fsg~~e~~~~~l~~G~y~s~~~~~~~~----~~~~~~~~l~~ip 140 (254)
+ -+.+.++.+.+.|+.|++|...... +-....+++++.+
T Consensus 161 ----------------~-p~~~~l~~~~~~G~~~~igSDAH~~~~vg~~~~a~~~~~~~g 203 (215)
T PRK08392 161 ----------------V-PDLEFIRECIKRGIKLTFASDAHRPEDVGNVSWSLKVFKKAG 203 (215)
T ss_pred ----------------C-CCHHHHHHHHHcCCEEEEeCCCCChHHCCcHHHHHHHHHHcC
Confidence 1 1345666777777777777653321 1234555666554
No 145
>TIGR01792 urease_alph urease, alpha subunit. This model describes the urease alpha subunit UreC (designated beta or B chain, UreB in Helicobacter species). Accessory proteins for incorporation of the nickel cofactor are usually found in addition to the urease alpha, beta, and gamma subunits. The trusted cutoff is set above the scores of many reported fragments and of a putative second urease alpha chain in Streptomyces coelicolor.
Probab=69.15 E-value=13 Score=37.15 Aligned_cols=61 Identities=16% Similarity=0.230 Sum_probs=39.1
Q ss_pred HHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccchHHH---HHHHHHhcCC
Q 025333 19 FSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGD---LLEIMKSVGP 91 (254)
Q Consensus 19 l~~l~~ll~~~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a~~~---~l~il~~~~~ 91 (254)
.+.|.+.++.+ +.+++ +..+|. .--+++.+.+++|.++|+||.+|+ +...+ +-+.++.++.
T Consensus 202 ~~~L~e~i~aG-a~gfK-~h~~y~---------~s~e~L~~al~~A~e~gv~V~iH~-ET~~E~g~ve~t~~a~g~ 265 (567)
T TIGR01792 202 PAALIEQIEAG-ACGLK-VHEDWG---------ATPAAIDNALSVADEYDVQVAVHT-DTLNESGFVEDTIAAFKG 265 (567)
T ss_pred HHHHHHHHHcC-CcEEE-eCCCCC---------CCHHHHHHHHHHHHHcCCEEEEeC-CCcccchHHHHHHHHHCC
Confidence 44555555433 45555 444442 123688899999999999999999 44444 4456666654
No 146
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=68.92 E-value=65 Score=28.04 Aligned_cols=110 Identities=16% Similarity=0.136 Sum_probs=68.4
Q ss_pred HHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccchHHHHHHHHHhcCCCCCcEEE
Q 025333 19 FSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVII 98 (254)
Q Consensus 19 l~~l~~ll~~~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a~~~~l~il~~~~~~~~~~Ii 98 (254)
++.+++.+..+ +.+| .++.+ ..+.+...+.-++..++|++++.|++|+-+- ++..+.+- .+ +
T Consensus 24 ~~~ve~al~~G-v~~v-----QlR~K--~~~~~~~~~~a~~~~~lc~~~~v~liINd~~------dlA~~~~A--dG--V 85 (211)
T COG0352 24 LEWVEAALKGG-VTAV-----QLREK--DLSDEEYLALAEKLRALCQKYGVPLIINDRV------DLALAVGA--DG--V 85 (211)
T ss_pred HHHHHHHHhCC-CeEE-----EEecC--CCChHHHHHHHHHHHHHHHHhCCeEEecCcH------HHHHhCCC--CE--E
Confidence 67777777654 3333 12221 1122233677788899999999999998774 44445543 22 4
Q ss_pred EeC--CCCHHHHHHHHHCCcEEeecccccccchHHHHHHHHhCCCCcEEEecCCC
Q 025333 99 HSY--LGSAEMVPELSKLGAYFSFSGFLMSMKAQKAKKMLKVVPSERILLETDAP 151 (254)
Q Consensus 99 H~f--sg~~e~~~~~l~~G~y~s~~~~~~~~~~~~~~~~l~~ip~driLlETD~P 151 (254)
|-- ......+++++..+..+|+|.. +.+++.++. +.+.|.|.+..=+|
T Consensus 86 HlGq~D~~~~~ar~~~~~~~iIG~S~h----~~eea~~A~-~~g~DYv~~Gpifp 135 (211)
T COG0352 86 HLGQDDMPLAEARELLGPGLIIGLSTH----DLEEALEAE-ELGADYVGLGPIFP 135 (211)
T ss_pred EcCCcccchHHHHHhcCCCCEEEeecC----CHHHHHHHH-hcCCCEEEECCcCC
Confidence 632 2356777788888899998863 344554444 44578988765444
No 147
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=68.38 E-value=58 Score=29.92 Aligned_cols=138 Identities=17% Similarity=0.169 Sum_probs=80.5
Q ss_pred eeccccccccCChhHHHHHHHHhhcCCceEEEeecCCCCCC--CCCCCHHHHHHHHHHHHHHHHhcCCceEEeccc----
Q 025333 4 VCFIFRFVQERTPNWFSTLKEFFEITPAAAVGEIGLDKGSK--GREIDFMDQVGVFRQQLELAKELKRPASIHCVR---- 77 (254)
Q Consensus 4 ~G~HP~~~~~~~~~~l~~l~~ll~~~~~~aIGEiGLD~~~~--~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~---- 77 (254)
||.-|-+++ ++.++.|++|.++ --+.| |.||.-... .......+-...|......++++|+-|..|.-.
T Consensus 120 IgTRPDClp---d~VldlL~e~~~r-~~vWv-ELGLQT~h~~Tlk~iNRgHd~~~y~dav~r~rkrgIkvc~HiI~GLPg 194 (312)
T COG1242 120 IGTRPDCLP---DDVLDLLAEYNKR-YEVWV-ELGLQTAHDKTLKRINRGHDFACYVDAVKRLRKRGIKVCTHLINGLPG 194 (312)
T ss_pred ecCCCCCCc---HHHHHHHHHHhhh-eEEEE-EeccchhhHHHHHHHhcccchHHHHHHHHHHHHcCCeEEEEEeeCCCC
Confidence 344555554 4778899998876 34555 999986531 011233456678888999999999999999875
Q ss_pred -hHHHHHHHHH---hcCCCCCcEE-EEeCCCCHHHHHHHHHCCcEEeecccccccchHHHHHHHHhCCCCcEE--EecCC
Q 025333 78 -AFGDLLEIMK---SVGPFPDGVI-IHSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQKAKKMLKVVPSERIL--LETDA 150 (254)
Q Consensus 78 -a~~~~l~il~---~~~~~~~~~I-iH~fsg~~e~~~~~l~~G~y~s~~~~~~~~~~~~~~~~l~~ip~driL--lETD~ 150 (254)
..+++++-++ ..+....++. +|--.|+. +++.+. .|-+=-++-- .-...+.++++.+|++=+. +-.|+
T Consensus 195 E~~~~mleTak~v~~~~v~GIKlH~LhvvkgT~-m~k~Y~-~G~l~~ls~e---eYv~~~~d~le~lpp~vviHRitgd~ 269 (312)
T COG1242 195 ETRDEMLETAKIVAELGVDGIKLHPLHVVKGTP-MEKMYE-KGRLKFLSLE---EYVELVCDQLEHLPPEVVIHRITGDA 269 (312)
T ss_pred CCHHHHHHHHHHHHhcCCceEEEEEEEEecCCh-HHHHHH-cCCceeccHH---HHHHHHHHHHHhCCcceEEEEecCCC
Confidence 3556665554 3443222332 36666763 444443 3432212210 0023466788888876444 23444
Q ss_pred C
Q 025333 151 P 151 (254)
Q Consensus 151 P 151 (254)
|
T Consensus 270 p 270 (312)
T COG1242 270 P 270 (312)
T ss_pred C
Confidence 4
No 148
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=67.80 E-value=93 Score=27.94 Aligned_cols=115 Identities=15% Similarity=0.112 Sum_probs=61.7
Q ss_pred HHHHHHHHhhcCCceEEEeecCCCCCCCCCCC---HHHHH---------HHHHHHHHHHHhcCCceEEeccc------hH
Q 025333 18 WFSTLKEFFEITPAAAVGEIGLDKGSKGREID---FMDQV---------GVFRQQLELAKELKRPASIHCVR------AF 79 (254)
Q Consensus 18 ~l~~l~~ll~~~~~~aIGEiGLD~~~~~~~~~---~~~Q~---------~vf~~ql~lA~~~~lPvilH~~~------a~ 79 (254)
.++.+..+. +..+-+| |+|++|...-..-+ ...|+ .+|+..-++.++.+.|+++=+-- ..
T Consensus 31 ~~~~~~~l~-~~Gad~i-ElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~ 108 (263)
T CHL00200 31 TKKALKILD-KKGADII-ELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFTYYNPVLHYGI 108 (263)
T ss_pred HHHHHHHHH-HCCCCEE-EECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHhCH
Confidence 344455554 4556667 99999985311100 11222 34554444444577897654442 45
Q ss_pred HHHHHHHHhcCCCCCcEEEEeCCCCHHHHHH----HHHCCcEEeecccccccchHHHHHHHHhC
Q 025333 80 GDLLEIMKSVGPFPDGVIIHSYLGSAEMVPE----LSKLGAYFSFSGFLMSMKAQKAKKMLKVV 139 (254)
Q Consensus 80 ~~~l~il~~~~~~~~~~IiH~fsg~~e~~~~----~l~~G~y~s~~~~~~~~~~~~~~~~l~~i 139 (254)
+++++-+++.|. ..+++|-. +.++..+ +.+.|+.+.+--.++. ..++++.+.+..
T Consensus 109 e~F~~~~~~aGv--dgviipDL--P~ee~~~~~~~~~~~gi~~I~lv~PtT-~~eri~~i~~~a 167 (263)
T CHL00200 109 NKFIKKISQAGV--KGLIIPDL--PYEESDYLISVCNLYNIELILLIAPTS-SKSRIQKIARAA 167 (263)
T ss_pred HHHHHHHHHcCC--eEEEecCC--CHHHHHHHHHHHHHcCCCEEEEECCCC-CHHHHHHHHHhC
Confidence 677888888775 45677765 2344433 3345765544333332 245566666553
No 149
>PF01979 Amidohydro_1: Amidohydrolase family; InterPro: IPR006680 This group of enzymes represents a large metal dependent hydrolase superfamily []. The family includes adenine deaminase (3.5.4.2 from EC) that hydrolyses adenine to form hypoxanthine and ammonia. The adenine deaminase reaction is important for adenine utilization as a purine and also as a nitrogen source []. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases (3.5.1.25 from EC). These enzymes catalyse the reaction: N-acetyl-D-glucosamine 6-phosphate + H2O = D-glucosamine 6-phosphate + acetateThis family includes dihydroorotase and urease which belong to MEROPS peptidase family M38 (beta-aspartyl dipeptidase, clan MJ), where they are classified as non-peptidase homologs. ; GO: 0016787 hydrolase activity; PDB: 1O12_A 2KAU_C 1FWD_C 1A5M_C 1FWC_C 1FWI_C 1EJV_C 1FWH_C 1A5L_C 1KRA_C ....
Probab=67.69 E-value=34 Score=30.33 Aligned_cols=68 Identities=28% Similarity=0.345 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHh------cCCceEEeccchHHH-----------HHHHHHhcCCC------CCcEEEEeCCCCHHHHHHH
Q 025333 55 GVFRQQLELAKE------LKRPASIHCVRAFGD-----------LLEIMKSVGPF------PDGVIIHSYLGSAEMVPEL 111 (254)
Q Consensus 55 ~vf~~ql~lA~~------~~lPvilH~~~a~~~-----------~l~il~~~~~~------~~~~IiH~fsg~~e~~~~~ 111 (254)
+-++..++++.+ .++|+.+|....... .++-+...+.. ...++.|+..-+.+.+..+
T Consensus 144 ~~l~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~l 223 (333)
T PF01979_consen 144 EELREAVELAKEFLAAEKLGIPVHIHVAEGTGEVEAMTHLYGMSPIEALDHLGLLEEAIDDGVDLIAHGTHLSDEEIELL 223 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHEEEEEESSSHHHHCCCHHHHSHHHHHHHHHHHSCHHHHHHHCEEEEEHTTSEHHHHHHH
T ss_pred hhhhhHHhhhhhHHHHHhhcccceeeeccCcccceeEeeeeeccchhhhccchhhhhhcccccceeeccccCCHHHhhhh
Confidence 456666777776 399999999986655 11111111110 1235669887777777777
Q ss_pred HHCCcEEeecc
Q 025333 112 SKLGAYFSFSG 122 (254)
Q Consensus 112 l~~G~y~s~~~ 122 (254)
.+.+.++....
T Consensus 224 ~~~~~~~~~~~ 234 (333)
T PF01979_consen 224 KETGIGIIHCP 234 (333)
T ss_dssp HHHTHEEEEEH
T ss_pred hccCCcccccc
Confidence 77787776543
No 150
>PRK04250 dihydroorotase; Provisional
Probab=67.04 E-value=1.1e+02 Score=28.93 Aligned_cols=35 Identities=17% Similarity=0.192 Sum_probs=26.9
Q ss_pred cHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCCC
Q 025333 212 NIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEG 247 (254)
Q Consensus 212 ~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~~ 247 (254)
.++-++..+ .-..++.+++.+.++.|..++|+++.
T Consensus 294 ~lpl~~~~v-~~~~lsl~~~v~~~t~npAk~lgl~~ 328 (398)
T PRK04250 294 EVPLLLDAA-NKGMISLFDIVEKMHDNPARIFGIKN 328 (398)
T ss_pred HHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHhCCCC
Confidence 355555432 34569999999999999999999964
No 151
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=66.79 E-value=93 Score=28.26 Aligned_cols=132 Identities=17% Similarity=0.207 Sum_probs=71.3
Q ss_pred eccccccccCChhHHHHHHHHhhcCCceEEEeecCCCCCCC--CCCCHHHHHHHHHHHHHHHHhcCCceEEeccc-----
Q 025333 5 CFIFRFVQERTPNWFSTLKEFFEITPAAAVGEIGLDKGSKG--REIDFMDQVGVFRQQLELAKELKRPASIHCVR----- 77 (254)
Q Consensus 5 G~HP~~~~~~~~~~l~~l~~ll~~~~~~aIGEiGLD~~~~~--~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~----- 77 (254)
+.+|..+ +++.++.|.++.+.+-...| |+|+.-.... ......+-.+-+.+.++.+++.|..+..|.--
T Consensus 115 ~trpd~l---~~e~l~~L~~l~~~G~~~~i-~lGlQS~~d~~L~~i~Rg~t~~~~~~ai~~l~~~gi~v~~~lI~GlPge 190 (302)
T TIGR01212 115 GTRPDCV---PDEVLDLLAEYVERGYEVWV-ELGLQTAHDKTLKKINRGHDFACYVDAVKRARKRGIKVCSHVILGLPGE 190 (302)
T ss_pred EecCCcC---CHHHHHHHHHhhhCCceEEE-EEccCcCCHHHHHHHcCcChHHHHHHHHHHHHHcCCEEEEeEEECCCCC
Confidence 4445444 44556777766443221345 7888865310 00111223445688899999999999999652
Q ss_pred hHHH---HHHHHHhcCCCCCcEEEE---eCCCCHHHHHHHHHCCcEEeecccccccchHHHHHHHHhCCCCcEEEe
Q 025333 78 AFGD---LLEIMKSVGPFPDGVIIH---SYLGSAEMVPELSKLGAYFSFSGFLMSMKAQKAKKMLKVVPSERILLE 147 (254)
Q Consensus 78 a~~~---~l~il~~~~~~~~~~IiH---~fsg~~e~~~~~l~~G~y~s~~~~~~~~~~~~~~~~l~~ip~driLlE 147 (254)
..++ .++.+.+.++ ..+-+| -+.|+. +.+....|-|--.+- ..-...+..+++.+|.+-++.-
T Consensus 191 t~e~~~~t~~~l~~l~~--d~i~i~~l~~~pgT~--L~~~~~~g~~~~~~~---~e~~~~~~~~l~~l~~~~~i~R 259 (302)
T TIGR01212 191 DREEMMETAKIVSLLDV--DGIKIHPLHVVKGTK--MAKMYEKGELKTLSL---EEYISLACDFLEHLPPEVVIHR 259 (302)
T ss_pred CHHHHHHHHHHHHhcCC--CEEEEEEEEecCCCH--HHHHHHcCCCCCCCH---HHHHHHHHHHHHhCCcCeEEEE
Confidence 2334 4555555554 334445 444543 333345564432221 0112456788899998766544
No 152
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=65.30 E-value=58 Score=26.59 Aligned_cols=71 Identities=18% Similarity=0.221 Sum_probs=45.5
Q ss_pred hHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccc-hHHHHHHHHHhcC
Q 025333 17 NWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVR-AFGDLLEIMKSVG 90 (254)
Q Consensus 17 ~~l~~l~~ll~~~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~-a~~~~l~il~~~~ 90 (254)
..++.+.+++.+.++..| =|||+....+...+...+.+-|.+ .+.+..++||.+|-.+ .+....++|...+
T Consensus 40 ~~~~~l~~li~~~~~~~v-VVGlP~~m~g~~~~~~~~~~~f~~--~L~~r~~lpv~l~DERltTv~A~~~L~~~~ 111 (141)
T COG0816 40 QDFNALLKLVKEYQVDTV-VVGLPLNMDGTEGPRAELARKFAE--RLKKRFNLPVVLWDERLSTVEAERMLIEAG 111 (141)
T ss_pred hhHHHHHHHHHHhCCCEE-EEecCcCCCCCcchhHHHHHHHHH--HHHHhcCCCEEEEcCccCHHHHHHHHHHcC
Confidence 368888888887665444 289998765433333333444444 4567789999999987 3445556666554
No 153
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=64.30 E-value=34 Score=29.32 Aligned_cols=50 Identities=18% Similarity=0.239 Sum_probs=36.6
Q ss_pred CHHHHHHHH----HCCc-EEeecccccccchHHHHHHHHhCCCCcEEEecCCCCC
Q 025333 104 SAEMVPELS----KLGA-YFSFSGFLMSMKAQKAKKMLKVVPSERILLETDAPDA 153 (254)
Q Consensus 104 ~~e~~~~~l----~~G~-y~s~~~~~~~~~~~~~~~~l~~ip~driLlETD~P~~ 153 (254)
+.+.+.+++ ++|+ -+-+||.-.....+.+.++|+-++...+++||++--.
T Consensus 76 P~eVaeRL~ei~K~~g~d~vRiSG~EP~l~~EHvlevIeLl~~~tFvlETNG~~~ 130 (228)
T COG5014 76 PEEVAERLLEISKKRGCDLVRISGAEPILGREHVLEVIELLVNNTFVLETNGLMF 130 (228)
T ss_pred HHHHHHHHHHHHHhcCCcEEEeeCCCccccHHHHHHHHHhccCceEEEEeCCeEE
Confidence 577777774 3554 5667776333456778999999999999999998643
No 154
>PRK00957 methionine synthase; Provisional
Probab=64.03 E-value=1.1e+02 Score=27.55 Aligned_cols=84 Identities=14% Similarity=0.296 Sum_probs=50.1
Q ss_pred cCCceEEeccchHHHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHH---CCcEEeeccccc---c-cchH----HHHHH
Q 025333 67 LKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSK---LGAYFSFSGFLM---S-MKAQ----KAKKM 135 (254)
Q Consensus 67 ~~lPvilH~~~a~~~~l~il~~~~~~~~~~IiH~fsg~~e~~~~~l~---~G~y~s~~~~~~---~-~~~~----~~~~~ 135 (254)
.+.++.+|+-+....+++.|.+.+. .++.--|+++.+.++.+.+ .|..+.++-.-+ . .+.+ .++++
T Consensus 189 i~~~v~lH~CG~~~~i~~~l~~~~v---d~i~ld~~~~~~~l~~l~~~~~~~k~l~~GvId~~~~~~e~~e~v~~~i~~~ 265 (305)
T PRK00957 189 LNVPVAMHVCGDVSNIIDDLLKFNV---DILDHEFASNKKNLEILEEKDLIGKKIGFGCVDTKSKSVESVDEIKALIEEG 265 (305)
T ss_pred hCCceEEEECCCcHHHHHHHHhCCC---CEEEEeecCCCCCHHHHhhhccCCCEEEEEEEcCCCCCCCCHHHHHHHHHHH
Confidence 4788999999888888888877653 2333333333333444432 243344332111 1 1222 24566
Q ss_pred HHhCCCCcEEEecCCCCC
Q 025333 136 LKVVPSERILLETDAPDA 153 (254)
Q Consensus 136 l~~ip~driLlETD~P~~ 153 (254)
++.+|++++.+-+||.+.
T Consensus 266 ~~~~~~~~l~lsp~CGl~ 283 (305)
T PRK00957 266 IEILGAENILIDPDCGMR 283 (305)
T ss_pred HHhcCHHHEEECCCcCCC
Confidence 667889999999999874
No 155
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=63.96 E-value=85 Score=26.11 Aligned_cols=107 Identities=16% Similarity=0.092 Sum_probs=59.5
Q ss_pred HHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHh--cCCceEEecc-c-hHHHHHHHHHhcCCCCCcEE
Q 025333 22 LKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKE--LKRPASIHCV-R-AFGDLLEIMKSVGPFPDGVI 97 (254)
Q Consensus 22 l~~ll~~~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~--~~lPvilH~~-~-a~~~~l~il~~~~~~~~~~I 97 (254)
+.+.+.+. +.+| |+|+++... ...+. ++..++ .+.|+.+|.- . .....++.+.+.|. ..++
T Consensus 18 ~~~~l~~~-i~~i-eig~~~~~~-------~g~~~----i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGa--d~i~ 82 (202)
T cd04726 18 LAKKVPDG-VDII-EAGTPLIKS-------EGMEA----VRALREAFPDKIIVADLKTADAGALEAEMAFKAGA--DIVT 82 (202)
T ss_pred HHHHhhhc-CCEE-EcCCHHHHH-------hCHHH----HHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCC--CEEE
Confidence 33334444 5555 999887421 11222 222222 3899999944 2 22234566667764 3467
Q ss_pred EEeCCCC---HHHHHHHHHCCcEEeec--ccccccchHHHHHHHHhCCCCcEEEe
Q 025333 98 IHSYLGS---AEMVPELSKLGAYFSFS--GFLMSMKAQKAKKMLKVVPSERILLE 147 (254)
Q Consensus 98 iH~fsg~---~e~~~~~l~~G~y~s~~--~~~~~~~~~~~~~~l~~ip~driLlE 147 (254)
+|..++. .+.++.+.+.|+-+.+. +. .+..+..+ +...+.|.+++.
T Consensus 83 ~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~---~t~~e~~~-~~~~~~d~v~~~ 133 (202)
T cd04726 83 VLGAAPLSTIKKAVKAAKKYGKEVQVDLIGV---EDPEKRAK-LLKLGVDIVILH 133 (202)
T ss_pred EEeeCCHHHHHHHHHHHHHcCCeEEEEEeCC---CCHHHHHH-HHHCCCCEEEEc
Confidence 7987653 23444555678888753 32 23455555 445578888884
No 156
>PRK07203 putative chlorohydrolase/aminohydrolase; Validated
Probab=62.99 E-value=20 Score=34.12 Aligned_cols=59 Identities=15% Similarity=0.298 Sum_probs=41.7
Q ss_pred HHHHHhcC----CceEEeccchHHHHHHHHHhcCCCCCcEEEEeCCCC------HHHHHHHHHCCcEEeeccc
Q 025333 61 LELAKELK----RPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGS------AEMVPELSKLGAYFSFSGF 123 (254)
Q Consensus 61 l~lA~~~~----lPvilH~~~a~~~~l~il~~~~~~~~~~IiH~fsg~------~e~~~~~l~~G~y~s~~~~ 123 (254)
++...++| ..+..||....++-+++|.+.+. .|.||-..+ ..-+.++++.|+-++++..
T Consensus 244 v~~l~~~Gll~~~~~~~H~~~~~~~d~~~la~~g~----~v~~~P~sn~~l~~g~~p~~~~~~~Gv~v~lGtD 312 (442)
T PRK07203 244 VERLADFGLLGEKTLAAHCIYLSDEEIDLLKETDT----FVVHNPESNMGNAVGYNPVLEMIKNGILLGLGTD 312 (442)
T ss_pred HHHHHhCCCCCCCcEEEEeecCCHHHHHHHHhcCC----eEEECchhhhhcccCCCCHHHHHHCCCeEEEcCC
Confidence 34444444 35678999988888899998763 477876432 3456788899999988754
No 157
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=62.51 E-value=1.1e+02 Score=31.67 Aligned_cols=122 Identities=19% Similarity=0.254 Sum_probs=67.4
Q ss_pred CceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhc---CCceEEeccc-hHHHHHHHHHhcCCCCCcEEEEeCC-CC
Q 025333 30 PAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKEL---KRPASIHCVR-AFGDLLEIMKSVGPFPDGVIIHSYL-GS 104 (254)
Q Consensus 30 ~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~---~lPvilH~~~-a~~~~l~il~~~~~~~~~~IiH~fs-g~ 104 (254)
+++-|=|--|-........+++.-.+++...+.+|.+- +..|.+|... ...++++.+.+... -++..=++ ..
T Consensus 596 ~~IQiDEPal~e~~~~~~~~~~~~l~~~v~a~n~a~~~~~~~~~i~tH~C~g~~~~i~~~i~~l~v---D~~~lE~~rs~ 672 (758)
T PRK05222 596 KIIQIDEPALREGLPLRRSDWDAYLDWAVEAFRLATSGVKDETQIHTHMCYSEFNDIIDAIAALDA---DVISIETSRSD 672 (758)
T ss_pred CEEEeeCchhhhcCcccccCHHHHHHHHHHHHHHHHcCCCCCCEEEEEEeccChHHHHHHHHhCCC---CEEEEEecCCC
Confidence 45666666554322111223444556666677777662 3457778774 58888888876543 23332232 22
Q ss_pred HHHHHHHHHCC--cEEee------cccccccc--hHHHHHHHHhCCCCcEEEecCCCCCC
Q 025333 105 AEMVPELSKLG--AYFSF------SGFLMSMK--AQKAKKMLKVVPSERILLETDAPDAL 154 (254)
Q Consensus 105 ~e~~~~~l~~G--~y~s~------~~~~~~~~--~~~~~~~l~~ip~driLlETD~P~~~ 154 (254)
.+.++.+-+.+ --+++ ++.+-... ...++++++.+|++||.+.+||.+..
T Consensus 673 ~e~L~~~~~~~~~~~iglGVvd~~s~~ves~eei~~rI~~a~~~v~~e~l~v~PdCGl~t 732 (758)
T PRK05222 673 MELLDAFEDFGYPNEIGPGVYDIHSPRVPSVEEIEELLRKALEVIPAERLWVNPDCGLKT 732 (758)
T ss_pred chhHHHhhccCCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHhCChheEEEeCCCCCcC
Confidence 45555554422 11222 22221111 13366788889999999999999854
No 158
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase. This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717.
Probab=62.30 E-value=2e+02 Score=29.87 Aligned_cols=123 Identities=19% Similarity=0.252 Sum_probs=63.9
Q ss_pred CceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhc---CCceEEeccc-hHHHHHHHHHhcCCCCCcEEEEeCCCCH
Q 025333 30 PAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKEL---KRPASIHCVR-AFGDLLEIMKSVGPFPDGVIIHSYLGSA 105 (254)
Q Consensus 30 ~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~---~lPvilH~~~-a~~~~l~il~~~~~~~~~~IiH~fsg~~ 105 (254)
+.+.|=|-.|-.........+..-.+.....+..+.+- +..+.+|+.. .+.++++.+.+.+. ..+-+-...+..
T Consensus 590 ~~IQIDEPaL~~~l~~~~~~~~~~l~~a~~~~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~v--D~i~lE~~r~~~ 667 (750)
T TIGR01371 590 KIIQIDEPALREGLPLRKSDWPEYLDWAVEAFRLATSGVKDETQIHTHMCYSEFNEIIESIADLDA--DVISIEASRSDM 667 (750)
T ss_pred CEEEEeCchhhhcCCccchhHHHHHHHHHHHHHHHHhCCCCCCEEEEEEECCCcHHHHHHHHhCCC--CEEEEEecCCCh
Confidence 45666666664332111112233334445555554431 3557788875 56888888876543 222233322334
Q ss_pred HHHHHHHH-CCc--EEeecc------cccccc--hHHHHHHHHhCCCCcEEEecCCCCCC
Q 025333 106 EMVPELSK-LGA--YFSFSG------FLMSMK--AQKAKKMLKVVPSERILLETDAPDAL 154 (254)
Q Consensus 106 e~~~~~l~-~G~--y~s~~~------~~~~~~--~~~~~~~l~~ip~driLlETD~P~~~ 154 (254)
+.++.+.+ .++ -++.+- .+.... .+.++++++.+|.+|+.+-+||.+..
T Consensus 668 e~L~~~~~~~~~~~~ig~GVvD~~s~~ve~~eei~~~i~~a~~~i~~erl~vsPdCGL~t 727 (750)
T TIGR01371 668 ELLSAFKNGFGYPNGIGPGVYDIHSPRVPSVEEMADLIEKALQVLPAERLWVNPDCGLKT 727 (750)
T ss_pred hHHHHhhhhcccCCeEEEEEEeCCCCCcCCHHHHHHHHHHHHHhcCcceEEEeCCCCCCc
Confidence 55555543 121 122221 111110 13356677778999999999999865
No 159
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Probab=61.11 E-value=1.4e+02 Score=31.06 Aligned_cols=122 Identities=16% Similarity=0.194 Sum_probs=64.7
Q ss_pred CceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHh-c--CCceEEecc-chHHHHHHHHHhcCCCCCcEEEEeCCCC-
Q 025333 30 PAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKE-L--KRPASIHCV-RAFGDLLEIMKSVGPFPDGVIIHSYLGS- 104 (254)
Q Consensus 30 ~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~-~--~lPvilH~~-~a~~~~l~il~~~~~~~~~~IiH~fsg~- 104 (254)
+++-|=|.-|-.........++.-.+.+...++++.+ . +..+.+|+. +.+.++++.|.+... -++..-++-+
T Consensus 601 ~~IQIDEPal~e~~~~~~~~~~~~l~~av~af~~~~~~v~~~~~I~~H~C~gnf~~I~~~i~~l~~---D~~~~E~~rs~ 677 (766)
T PLN02475 601 TVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDA---DVITIENSRSD 677 (766)
T ss_pred CEEEEeCcchhhcCCcCccCHHHHHHHHHHHHHHHHhcCCCCCEEEEEEecCCcHHHHHHHHhCCC---CEEEEEcCCCC
Confidence 4455555555332211122344455555555677766 3 455777866 568888888866543 2333323222
Q ss_pred HHHHHHHHH---CCcEEeec------ccccccc--hHHHHHHHHhCCCCcEEEecCCCCCC
Q 025333 105 AEMVPELSK---LGAYFSFS------GFLMSMK--AQKAKKMLKVVPSERILLETDAPDAL 154 (254)
Q Consensus 105 ~e~~~~~l~---~G~y~s~~------~~~~~~~--~~~~~~~l~~ip~driLlETD~P~~~ 154 (254)
.+.++.+.+ .+--++++ +.+-... ...++++++.+|++||.+.+||.+..
T Consensus 678 ~~~l~~l~~~~~~~~~IglGViD~~s~~ves~Eei~~rI~~a~~~v~~e~l~vnPDCGl~t 738 (766)
T PLN02475 678 EKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKT 738 (766)
T ss_pred hhhhHHHHhhcCCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHhCCcceEEEcCCCCccc
Confidence 233444422 22223322 2221110 13366788889999999999999854
No 160
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=60.33 E-value=47 Score=28.54 Aligned_cols=56 Identities=21% Similarity=0.378 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhcCCceEEeccc------hHHHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHH
Q 025333 56 VFRQQLELAKELKRPASIHCVR------AFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSK 113 (254)
Q Consensus 56 vf~~ql~lA~~~~lPvilH~~~------a~~~~l~il~~~~~~~~~~IiH~fsg~~e~~~~~l~ 113 (254)
-|+..++++.++++.++|.... ....+++++++++....++++++|+ .+.++.+.+
T Consensus 88 tL~evl~~~~~~~~~l~ieiK~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sf~--~~~l~~~~~ 149 (233)
T cd08582 88 TLEEYLAIVPKYGKKLFIEIKHPRRGPEAEEELLKLLKESGLLPEQIVIISFD--AEALKRVRE 149 (233)
T ss_pred CHHHHHHHHHhcCceEEEEeCCCccCccHHHHHHHHHHHcCCCCCCEEEEecC--HHHHHHHHH
Confidence 4778888888889999998884 2456788888885434678999995 566666655
No 161
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=60.25 E-value=47 Score=29.66 Aligned_cols=47 Identities=23% Similarity=0.300 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCCceE-Eeccch--------------------HHHHHHHHHhcCCCCCcEEE---EeCCCC
Q 025333 58 RQQLELAKELKRPAS-IHCVRA--------------------FGDLLEIMKSVGPFPDGVII---HSYLGS 104 (254)
Q Consensus 58 ~~ql~lA~~~~lPvi-lH~~~a--------------------~~~~l~il~~~~~~~~~~Ii---H~fsg~ 104 (254)
.+.++++++++.|++ +|..+. .++.++.+.+.|..+.++++ ..|..+
T Consensus 110 ~~~~~l~~~~~~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~Ii~DPg~gf~ks 180 (257)
T cd00739 110 PAMLEVAAEYGAPLVLMHMRGTPKTMQENPYYEDVVDEVLSFLEARLEAAESAGVARNRIILDPGIGFGKT 180 (257)
T ss_pred hHHHHHHHHcCCCEEEECCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEEecCCCcccC
Confidence 567788999999876 566421 23344556667765567777 456555
No 162
>PRK09228 guanine deaminase; Provisional
Probab=60.18 E-value=84 Score=29.96 Aligned_cols=108 Identities=12% Similarity=0.034 Sum_probs=61.4
Q ss_pred eeeccccccccCChhHHHHHHHHhhcC-CceEEEeecCCCCCCCCCCCHHHHHHHHHH------HHHHHHhcC----Cce
Q 025333 3 WVCFIFRFVQERTPNWFSTLKEFFEIT-PAAAVGEIGLDKGSKGREIDFMDQVGVFRQ------QLELAKELK----RPA 71 (254)
Q Consensus 3 ~~G~HP~~~~~~~~~~l~~l~~ll~~~-~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~------ql~lA~~~~----lPv 71 (254)
.+++-|+.....+++.++.+.++.++. .+ .++-+-. +...+ ...+.+. .++...++| ..+
T Consensus 197 ~~~~~p~~~~t~s~~~l~~~~~lA~~~~~~------~i~~Hl~--E~~~e-~~~~~~~~g~~~~~~~~l~~~G~l~~~~~ 267 (433)
T PRK09228 197 LYAITPRFAPTSTPEQLEAAGALAREHPDV------WIQTHLS--ENLDE-IAWVKELFPEARDYLDVYERYGLLGPRAV 267 (433)
T ss_pred eEEEECCcCCcCCHHHHHHHHHHHHHCCCC------ceEEeec--CChhH-HHHHHHHcCCCCCHHHHHHHcCCCCCCeE
Confidence 345556665555666777777776552 21 1111110 11111 1122221 245555555 346
Q ss_pred EEeccchHHHHHHHHHhcCCCCCcEEEEeCCCC------HHHHHHHHHCCcEEeeccc
Q 025333 72 SIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGS------AEMVPELSKLGAYFSFSGF 123 (254)
Q Consensus 72 ilH~~~a~~~~l~il~~~~~~~~~~IiH~fsg~------~e~~~~~l~~G~y~s~~~~ 123 (254)
..||....++-++++++.+. .+.||-+.+ ...+.++++.|+-++++..
T Consensus 268 ~~H~~~l~~~~~~~la~~g~----~v~~~P~sn~~lg~g~~~~~~~~~~Gv~v~lGtD 321 (433)
T PRK09228 268 FAHCIHLEDRERRRLAETGA----AIAFCPTSNLFLGSGLFDLKRADAAGVRVGLGTD 321 (433)
T ss_pred EEeccCCCHHHHHHHHHcCC----eEEECCccHHhhcCCCcCHHHHHHCCCeEEEecC
Confidence 68999988888999988753 466774322 3345677888988888754
No 163
>PRK09230 cytosine deaminase; Provisional
Probab=59.72 E-value=92 Score=29.69 Aligned_cols=62 Identities=18% Similarity=0.178 Sum_probs=43.0
Q ss_pred HHHHHHHHHhcCC---ceEEeccch-------HHHHHHHHHhcCCCCCcEEEEeCCCCHH---------------HHHHH
Q 025333 57 FRQQLELAKELKR---PASIHCVRA-------FGDLLEIMKSVGPFPDGVIIHSYLGSAE---------------MVPEL 111 (254)
Q Consensus 57 f~~ql~lA~~~~l---PvilH~~~a-------~~~~l~il~~~~~~~~~~IiH~fsg~~e---------------~~~~~ 111 (254)
.+..+++..++++ -+..||... .++.+++|++.+. .|+||-+.+.. -+.++
T Consensus 226 ~~~~~~~~~~~gl~~~v~~~H~~~l~~~~~~~~~~~~~~La~~gv----~vv~cP~sn~~l~~~~~~~p~~~g~~pi~~l 301 (426)
T PRK09230 226 VETVAALAHREGMGARVTASHTTAMHSYNGAYTSRLFRLLKMSGI----NFVANPLVNIHLQGRFDTYPKRRGITRVKEM 301 (426)
T ss_pred HHHHHHHHHHhCCCCCEEEEecCchhcCCHHHHHHHHHHHHHcCC----eEEECcchhhhhcCCCCCCCCCCCCcCHHHH
Confidence 3345666666664 577899986 4678899988753 46787544332 26888
Q ss_pred HHCCcEEeecc
Q 025333 112 SKLGAYFSFSG 122 (254)
Q Consensus 112 l~~G~y~s~~~ 122 (254)
++.|+-++++.
T Consensus 302 ~~aGv~V~lGT 312 (426)
T PRK09230 302 LEAGINVCFGH 312 (426)
T ss_pred HHCCCeEEEec
Confidence 99999998875
No 164
>PF02007 MtrH: Tetrahydromethanopterin S-methyltransferase MtrH subunit; InterPro: IPR023467 In archaea the enzyme tetrahydromethanopterin S-methyltransferase is composed of eight subunits, MtrA-H. The enzyme is a membrane- associated enzyme complex which catalyzes an energy-conserving, sodium-ion-translocating step in methanogenesis from hydrogen and carbon dioxide []. Subunit MtrH catalyzes the methylation reaction and was shown to exhibit methyltetrahydromethanopterin:cob(I)alamin methyltransferase activity []. CH3-H4MPT + cob(I)alamin --> H4MPT + CH3-cob(III)alamin (H4MPT = tetrahydromethanopterin); GO: 0008168 methyltransferase activity, 0006730 one-carbon metabolic process
Probab=59.23 E-value=1.1e+02 Score=28.19 Aligned_cols=104 Identities=17% Similarity=0.188 Sum_probs=64.3
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCceEEeccchHHH-HHHHHHhcC-CCCCcEEEEeCCCCHHHHH-HH-HHCC-----cEE
Q 025333 48 IDFMDQVGVFRQQLELAKELKRPASIHCVRAFGD-LLEIMKSVG-PFPDGVIIHSYLGSAEMVP-EL-SKLG-----AYF 118 (254)
Q Consensus 48 ~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a~~~-~l~il~~~~-~~~~~~IiH~fsg~~e~~~-~~-l~~G-----~y~ 118 (254)
-+++.-+++..+|.+++.++|.|.++|......+ +.+.++-.. .....+++-+-++....+- ++ -+.| +|=
T Consensus 44 FDk~~Ae~Li~~q~elsd~TGnp~~~~I~~~s~EA~~kYidFv~~i~d~PfliDS~~~~~R~~a~~yv~E~Gl~dR~IYN 123 (296)
T PF02007_consen 44 FDKEAAEALINRQEELSDETGNPCIVDIVAESPEAMEKYIDFVAEITDSPFLIDSSSPEVRIAAAKYVTEIGLADRAIYN 123 (296)
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHhhcCCCCeEecCCCHHHHHHHHHHHhhhchhhhhhhh
Confidence 3678999999999999999999999999975433 334443221 1123467766554432221 22 2234 799
Q ss_pred eecccccccchHHHHHHHHhCC-CCcEEEecCCCCCCc
Q 025333 119 SFSGFLMSMKAQKAKKMLKVVP-SERILLETDAPDALP 155 (254)
Q Consensus 119 s~~~~~~~~~~~~~~~~l~~ip-~driLlETD~P~~~p 155 (254)
|++.... .++ .++|++.. ..-|+|--|.-+..+
T Consensus 124 SIn~~~~---~~E-ieaLkes~i~aaIvLaFn~~d~s~ 157 (296)
T PF02007_consen 124 SINMSIE---DEE-IEALKESDIDAAIVLAFNPMDPSV 157 (296)
T ss_pred cCCCCCC---HHH-HHHHHhcCCCEEEEEecCCCCCCh
Confidence 9998542 333 45555554 455666666655444
No 165
>TIGR00629 uvde UV damage endonuclease UvdE. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=58.89 E-value=85 Score=29.06 Aligned_cols=26 Identities=23% Similarity=0.101 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHhcCCceEEeccc
Q 025333 52 DQVGVFRQQLELAKELKRPASIHCVR 77 (254)
Q Consensus 52 ~Q~~vf~~ql~lA~~~~lPvilH~~~ 77 (254)
.-.+-|++.=++|+++|.-|++|...
T Consensus 91 ~~~~~l~~iG~~a~~~~iRLS~Hp~q 116 (312)
T TIGR00629 91 FAQKELREIGELAKTHQHRLTFHPGQ 116 (312)
T ss_pred HHHHHHHHHHHHHHHcCeEEEECCCc
Confidence 44567788888999999999999986
No 166
>PRK15452 putative protease; Provisional
Probab=58.89 E-value=1.4e+02 Score=29.02 Aligned_cols=123 Identities=18% Similarity=0.163 Sum_probs=61.1
Q ss_pred HHHHHHHHhhcCCceEEEeecCCCCCCCC-CCCHHHHHHHHHHHHHHHHhcCCceEEeccc-----hHHHH---HHHHHh
Q 025333 18 WFSTLKEFFEITPAAAVGEIGLDKGSKGR-EIDFMDQVGVFRQQLELAKELKRPASIHCVR-----AFGDL---LEIMKS 88 (254)
Q Consensus 18 ~l~~l~~ll~~~~~~aIGEiGLD~~~~~~-~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~-----a~~~~---l~il~~ 88 (254)
.++.|+..+..+ +-+| -+|.+.+.... ...+. .+-+++.+++|++.|+.|.+-... ....+ ++-+.+
T Consensus 12 ~~e~l~aAi~~G-ADaV-Y~G~~~~~~R~~~~~f~--~edl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l~~l~~ 87 (443)
T PRK15452 12 TLKNMRYAFAYG-ADAV-YAGQPRYSLRVRNNEFN--HENLALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLEPVIA 87 (443)
T ss_pred CHHHHHHHHHCC-CCEE-EECCCccchhhhccCCC--HHHHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHHHHHHh
Confidence 366777766543 3344 35555443111 01122 234888999999999888776432 12223 333334
Q ss_pred cCCCCCcEEEEeCCCCHHHHHHHH-HCCcEEeecccccccchHHHHHHHHhCCCCcEEEecCC
Q 025333 89 VGPFPDGVIIHSYLGSAEMVPELS-KLGAYFSFSGFLMSMKAQKAKKMLKVVPSERILLETDA 150 (254)
Q Consensus 89 ~~~~~~~~IiH~fsg~~e~~~~~l-~~G~y~s~~~~~~~~~~~~~~~~l~~ip~driLlETD~ 150 (254)
.+. ..+|+... |-...+++.. +..++.|+.-.++ +....+.+...+.+|+.+..+.
T Consensus 88 ~gv--DgvIV~d~-G~l~~~ke~~p~l~ih~stqlni~---N~~a~~f~~~lG~~rvvLSrEL 144 (443)
T PRK15452 88 MKP--DALIMSDP-GLIMMVREHFPEMPIHLSVQANAV---NWATVKFWQQMGLTRVILSREL 144 (443)
T ss_pred CCC--CEEEEcCH-HHHHHHHHhCCCCeEEEEecccCC---CHHHHHHHHHCCCcEEEECCcC
Confidence 433 33555432 2233333321 2345666554332 2334455556666666665544
No 167
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=58.48 E-value=1.3e+02 Score=26.45 Aligned_cols=63 Identities=10% Similarity=-0.030 Sum_probs=37.6
Q ss_pred ChhHHHHHHHHhhcC-CceEEEeecCCCCCCCC-CCCHHHHHHHHHHHHHHHHhcCCce-EEeccc
Q 025333 15 TPNWFSTLKEFFEIT-PAAAVGEIGLDKGSKGR-EIDFMDQVGVFRQQLELAKELKRPA-SIHCVR 77 (254)
Q Consensus 15 ~~~~l~~l~~ll~~~-~~~aIGEiGLD~~~~~~-~~~~~~Q~~vf~~ql~lA~~~~lPv-ilH~~~ 77 (254)
+++.++.+.+++++. ........+.+...... +...+.-.+.|++.+++|+++|.+. ++|...
T Consensus 43 ~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~ 108 (279)
T cd00019 43 KKERAEKFKAIAEEGPSICLSVHAPYLINLASPDKEKREKSIERLKDEIERCEELGIRLLVFHPGS 108 (279)
T ss_pred CHHHHHHHHHHHHHcCCCcEEEEcCceeccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 567788898888775 22211112222221110 1124455678999999999999995 566664
No 168
>COG0044 PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]
Probab=57.77 E-value=1.7e+02 Score=28.29 Aligned_cols=153 Identities=18% Similarity=0.215 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHHHHHHHhcCCceE-EeccchHHHHHHHHHhcCCC----CCcEEEEeCCCCHHHHHHHHHCCcEEeeccc
Q 025333 49 DFMDQVGVFRQQLELAKELKRPAS-IHCVRAFGDLLEIMKSVGPF----PDGVIIHSYLGSAEMVPELSKLGAYFSFSGF 123 (254)
Q Consensus 49 ~~~~Q~~vf~~ql~lA~~~~lPvi-lH~~~a~~~~l~il~~~~~~----~~~~IiH~fsg~~e~~~~~l~~G~y~s~~~~ 123 (254)
+.........+-+++|+.+|.|+. .|.- ..+.+++++..... ...+..|++.-+.+.... .|-++=+++.
T Consensus 204 p~~aE~~~iar~~~la~~~g~~vhi~HiS--t~~sv~li~~ak~~g~~vt~EvtphHL~l~~~~~~~---~~~~~k~nPP 278 (430)
T COG0044 204 PPIAEASAIARDLELARATGARVHICHIS--TKESVELIRAAKAEGIRVTAEVTPHHLLLDEEDIED---LGTLAKVNPP 278 (430)
T ss_pred ChHHHHHHHHHHHHHHHHhCCcEEEEEcC--CHHHHHHHHHHhhcCCceEEeecchheEccHhHhhc---cCcceEECCC
Confidence 457888899999999999997764 3443 34445555544321 123456888666555444 5667777775
Q ss_pred ccccch-HHHHHHHHhCCCCcEEEecCC-CCCCchhhhhcccccCCCCCCcccccccccCCCCCCCCCccccccCCCCCC
Q 025333 124 LMSMKA-QKAKKMLKVVPSERILLETDA-PDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSST 201 (254)
Q Consensus 124 ~~~~~~-~~~~~~l~~ip~driLlETD~-P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 201 (254)
+..... ..+.+.++.-..| ++-||- |...-.. ... +.. .++ |
T Consensus 279 LR~~~dr~aL~~~l~~G~ID--~iasDHaPht~eeK----------~~~----f~~----ap~-----------G----- 322 (430)
T COG0044 279 LRDEEDREALWEALKDGVID--VIASDHAPHTLEEK----------RLP----FEE----APS-----------G----- 322 (430)
T ss_pred CCCHHHHHHHHHHHhCCCCc--EEEcCCCCCCHHHh----------ccc----hhh----CCC-----------C-----
Confidence 432111 1234444443333 334553 3321100 000 000 000 1
Q ss_pred CCCCCCCCcccHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCCC
Q 025333 202 LPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEG 247 (254)
Q Consensus 202 ~~~~~~neP~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~~ 247 (254)
...-=..++..+. +.+-..++.+++.+.+..|..++|++.+
T Consensus 323 ----~~glE~~lpl~l~-lv~~g~lsl~~~v~~~S~nPA~ifgl~~ 363 (430)
T COG0044 323 ----IPGLETALPLLLT-LVKKGRLSLERLVELLSTNPARIFGLPP 363 (430)
T ss_pred ----CccHHHHHHHHHH-HHHcCCcCHHHHHHHHhhCHHHHhCCCC
Confidence 2222224555555 5566779999999999999999999975
No 169
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=57.51 E-value=67 Score=29.26 Aligned_cols=59 Identities=19% Similarity=0.169 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhcCCceEEeccch------HHHHHH----HHHhcCCCCCcEEEEeC-CCCHHHHHHHHHCCc
Q 025333 55 GVFRQQLELAKELKRPASIHCVRA------FGDLLE----IMKSVGPFPDGVIIHSY-LGSAEMVPELSKLGA 116 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~a------~~~~l~----il~~~~~~~~~~IiH~f-sg~~e~~~~~l~~G~ 116 (254)
+..+..++.|++.+-||+|-.-.. .+.+.. +.++.. ..+++|-- ..+.+.+.++++.|+
T Consensus 29 e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~---VPV~lHLDHg~~~e~i~~Ai~~Gf 98 (284)
T PRK09195 29 ETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYH---HPLALHLDHHEKFDDIAQKVRSGV 98 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCC---CCEEEECCCCCCHHHHHHHHHcCC
Confidence 778899999999999999977542 223333 333443 23666621 126899999999984
No 170
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=57.34 E-value=1.5e+02 Score=27.30 Aligned_cols=96 Identities=11% Similarity=0.238 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHh-c--CCceEEeccch------HHHHHHHHHhcCCCCCcEEEEe------CCC---CHHHHHHHH
Q 025333 51 MDQVGVFRQQLELAKE-L--KRPASIHCVRA------FGDLLEIMKSVGPFPDGVIIHS------YLG---SAEMVPELS 112 (254)
Q Consensus 51 ~~Q~~vf~~ql~lA~~-~--~lPvilH~~~a------~~~~l~il~~~~~~~~~~IiH~------fsg---~~e~~~~~l 112 (254)
...-+...+.++-.++ . ++||++-.|-. ..++++++.+.|. .-+.+|+ |+| +++.+.++.
T Consensus 113 l~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gv--d~i~Vh~Rt~~~~y~g~~~~~~~i~~ik 190 (312)
T PRK10550 113 LKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQQAGA--TELVVHGRTKEDGYRAEHINWQAIGEIR 190 (312)
T ss_pred hcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHHhcCC--CEEEECCCCCccCCCCCcccHHHHHHHH
Confidence 3444556666665554 3 59999998843 2355667777764 3467785 555 356666665
Q ss_pred HC-CcEEeecccccccchHHHHHHHHhCCCCcEEEecCC
Q 025333 113 KL-GAYFSFSGFLMSMKAQKAKKMLKVVPSERILLETDA 150 (254)
Q Consensus 113 ~~-G~y~s~~~~~~~~~~~~~~~~l~~ip~driLlETD~ 150 (254)
+. ++=+-.+|.+. +.+...++++..+.|-+++..-+
T Consensus 191 ~~~~iPVi~nGdI~--t~~da~~~l~~~g~DgVmiGRg~ 227 (312)
T PRK10550 191 QRLTIPVIANGEIW--DWQSAQQCMAITGCDAVMIGRGA 227 (312)
T ss_pred hhcCCcEEEeCCcC--CHHHHHHHHhccCCCEEEEcHHh
Confidence 53 56666677665 45778889988889999998865
No 171
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=57.32 E-value=42 Score=29.52 Aligned_cols=19 Identities=21% Similarity=0.155 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhcCCceEEe
Q 025333 56 VFRQQLELAKELKRPASIH 74 (254)
Q Consensus 56 vf~~ql~lA~~~~lPvilH 74 (254)
-+...|+.-.++|+||.|=
T Consensus 170 ~~~~~l~~~~~~g~pi~iT 188 (254)
T smart00633 170 EIRAALDRFASLGLEIQIT 188 (254)
T ss_pred HHHHHHHHHHHcCCceEEE
Confidence 3556666666678887754
No 172
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=57.26 E-value=1.6e+02 Score=27.62 Aligned_cols=117 Identities=19% Similarity=0.225 Sum_probs=66.9
Q ss_pred hHHHHHHHHhhcC-CceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceE------Eeccch--HHHHH----
Q 025333 17 NWFSTLKEFFEIT-PAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPAS------IHCVRA--FGDLL---- 83 (254)
Q Consensus 17 ~~l~~l~~ll~~~-~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvi------lH~~~a--~~~~l---- 83 (254)
..++.+...++.+ -.|.+||- ++.-+.....+..+. ++.++++|.++|+-+. +|.... +.+.+
T Consensus 14 g~l~~l~~ai~~GADaVY~G~~--~~~~R~~a~nfs~~~--l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~ 89 (347)
T COG0826 14 GNLEDLKAAIAAGADAVYIGEK--EFGLRRRALNFSVED--LAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLV 89 (347)
T ss_pred CCHHHHHHHHHcCCCEEEeCCc--ccccccccccCCHHH--HHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHH
Confidence 3477777777664 45677765 222211111223333 9999999999998432 333332 12333
Q ss_pred ---------------HHHHhcCCCCCcEEE--EeCCCCHHHHHHHHHCCcEEeecccccccchHHHHHHHHhCC
Q 025333 84 ---------------EIMKSVGPFPDGVII--HSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQKAKKMLKVVP 140 (254)
Q Consensus 84 ---------------~il~~~~~~~~~~Ii--H~fsg~~e~~~~~l~~G~y~s~~~~~~~~~~~~~~~~l~~ip 140 (254)
.++++.++. ..+++ ...-.+++.++-+.++|.-..+-+.. ++..+++++.++.|
T Consensus 90 e~GvDaviv~Dpg~i~l~~e~~p~-l~ih~S~q~~v~N~~~~~f~~~~G~~rvVl~rE--ls~~ei~~i~~~~~ 160 (347)
T COG0826 90 ELGVDAVIVADPGLIMLARERGPD-LPIHVSTQANVTNAETAKFWKELGAKRVVLPRE--LSLEEIKEIKEQTP 160 (347)
T ss_pred HcCCCEEEEcCHHHHHHHHHhCCC-CcEEEeeeEecCCHHHHHHHHHcCCEEEEeCcc--CCHHHHHHHHHhCC
Confidence 334333321 23333 24446788888888888655554433 35677888888876
No 173
>KOG4127 consensus Renal dipeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=57.11 E-value=69 Score=30.46 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=24.8
Q ss_pred cHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcC
Q 025333 212 NIHNVLDYVASLLDMTKEELAELSYRNAIRLFS 244 (254)
Q Consensus 212 ~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~ 244 (254)
.-|..+..+++ ++++.+|+......|..|+|.
T Consensus 358 kYP~LiaeLl~-r~~~~~E~~~l~g~N~LRV~~ 389 (419)
T KOG4127|consen 358 KYPDLIAELLE-RGWWEEELIGLAGGNLLRVFR 389 (419)
T ss_pred hhHHHHHHHHh-cCCcHHHHHHHhcchHHHHHH
Confidence 34555556655 688889999999999999995
No 174
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=55.65 E-value=1e+02 Score=28.13 Aligned_cols=59 Identities=14% Similarity=0.201 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhcCCceEEeccc------hHHHHHH----HHHhcCCCCCcEEEEeC-CCCHHHHHHHHHCCc
Q 025333 55 GVFRQQLELAKELKRPASIHCVR------AFGDLLE----IMKSVGPFPDGVIIHSY-LGSAEMVPELSKLGA 116 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~------a~~~~l~----il~~~~~~~~~~IiH~f-sg~~e~~~~~l~~G~ 116 (254)
+..++.++.|++.+.||+|-.-. ..+.+.. +.++.+ ..+.+|-- ..+.+.++++++.|+
T Consensus 29 e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~---VPValHLDHg~~~e~i~~ai~~GF 98 (286)
T PRK12738 29 ETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYN---MPLALHLDHHESLDDIRRKVHAGV 98 (286)
T ss_pred HHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCC---CCEEEECCCCCCHHHHHHHHHcCC
Confidence 67889999999999999995533 1222333 333443 23666621 137899999999874
No 175
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=55.41 E-value=1.2e+02 Score=29.04 Aligned_cols=128 Identities=13% Similarity=0.104 Sum_probs=68.0
Q ss_pred ChhHHHHHHHHhhcCCce----EEEe-ecCCCCCCCCCCCHHHHHHHHHHHH-HHHHhcCCceEEeccchHHHHH-HHHH
Q 025333 15 TPNWFSTLKEFFEITPAA----AVGE-IGLDKGSKGREIDFMDQVGVFRQQL-ELAKELKRPASIHCVRAFGDLL-EIMK 87 (254)
Q Consensus 15 ~~~~l~~l~~ll~~~~~~----aIGE-iGLD~~~~~~~~~~~~Q~~vf~~ql-~lA~~~~lPvilH~~~a~~~~l-~il~ 87 (254)
++++++.+.+.+.+-..- .||| .|.|.-...... - ..-+-|.+.+ +.+...++|++|=+-+ .+++ ..++
T Consensus 41 ~e~~~~~~~~~~~~v~~dwak~rVge~~~~D~Ialr~~S-~-DPae~fa~~vk~V~~a~~~PLIL~~~D--~evl~aale 116 (386)
T PF03599_consen 41 PEEEIEAKVERIKDVQFDWAKKRVGEFLGADMIALRLES-G-DPAEEFAKAVKKVAEAVDVPLILCGCD--PEVLKAALE 116 (386)
T ss_dssp -HCHHHHHHHHHTTTCCEHHHHCCCEEEE-SEEEEE-GG-G-STHHHHHHHHHHHHHC-SSEEEEESSH--HHHHHHHHH
T ss_pred ChhhHHHHHHHHhhhhhhhhhhhhhhhccccEEEEEecC-C-ChHHHHHHHHHHHHHhcCCCEEEEeCC--HHHHHHHHH
Confidence 556777777776654444 7999 898874321110 0 1112333333 3344589999998874 2222 3333
Q ss_pred hcCCCCCcEEEEeCC-CCHHHHH-HHHHCCcEEeecccccccchHHHHHHHHhCCCCcEEEec
Q 025333 88 SVGPFPDGVIIHSYL-GSAEMVP-ELSKLGAYFSFSGFLMSMKAQKAKKMLKVVPSERILLET 148 (254)
Q Consensus 88 ~~~~~~~~~IiH~fs-g~~e~~~-~~l~~G~y~s~~~~~~~~~~~~~~~~l~~ip~driLlET 148 (254)
..+. .+.++++-+ .+++.+- .+.+.|+=+...+...-...+.+...+...+.++|++.+
T Consensus 117 ~~~~--~kpLL~aAt~eNyk~m~~lA~~y~~pl~v~sp~Dln~lk~Ln~~l~~~Gv~dIVlDp 177 (386)
T PF03599_consen 117 ACAG--KKPLLYAATEENYKAMAALAKEYGHPLIVSSPIDLNLLKQLNIKLTELGVKDIVLDP 177 (386)
T ss_dssp HTTT--S--EEEEEBTTTHHHHHHHHHHCT-EEEEE-SSCHHHHHHHHHHHHTTT-GGEEEE-
T ss_pred HhCc--CCcEEeEcCHHHHHHHHHHHHHcCCeEEEEecccHHHHHHHHHHHHhcCcccEEecC
Confidence 3332 356777554 5555554 445678887776632211235567778889999999985
No 176
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=55.36 E-value=1.4e+02 Score=26.07 Aligned_cols=82 Identities=13% Similarity=0.055 Sum_probs=49.7
Q ss_pred HHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccchHHHHHHHHHhcCCCCCcEE
Q 025333 18 WFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVI 97 (254)
Q Consensus 18 ~l~~l~~ll~~~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a~~~~l~il~~~~~~~~~~I 97 (254)
..+.+...+....+-.||=.|+.... ......-....++.+++|++.|.-+-|+++.
T Consensus 113 ~~~~~~~a~~~~~v~il~H~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~aleins~~-------------------- 169 (237)
T COG1387 113 YTERLIAAMSNGAVDILAHPGGRLLG---RIDRGAYKEDIEELIELAEKNGKALEINSRP-------------------- 169 (237)
T ss_pred HHHHHHHHHcCCCccEEecCCccccc---cccccccHHHHHHHHHHHHHhCcEEeecCCc--------------------
Confidence 34555555666677777777775432 1123344566778888888888888888872
Q ss_pred EEeCCCCHHHHHHHHHCCcEEeeccc
Q 025333 98 IHSYLGSAEMVPELSKLGAYFSFSGF 123 (254)
Q Consensus 98 iH~fsg~~e~~~~~l~~G~y~s~~~~ 123 (254)
+....+.+.++.+.+.|++|+++..
T Consensus 170 -~~~~~~~~~~~~~~e~G~~~~i~tD 194 (237)
T COG1387 170 -GRLDPNSEILRLARELGVKLAIGTD 194 (237)
T ss_pred -CccCchHHHHHHHHHhCCeEEeecC
Confidence 1112234555555566677666654
No 177
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=55.33 E-value=91 Score=26.46 Aligned_cols=56 Identities=18% Similarity=0.264 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhcCCceEEeccch-------HHHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHH
Q 025333 56 VFRQQLELAKELKRPASIHCVRA-------FGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSK 113 (254)
Q Consensus 56 vf~~ql~lA~~~~lPvilH~~~a-------~~~~l~il~~~~~~~~~~IiH~fsg~~e~~~~~l~ 113 (254)
-|+..|+++++.++.+.|..... ...+.+++++++....++++.+| +.+.++.+.+
T Consensus 88 tl~evl~~~~~~~~~l~iEiK~~~~~~~~~~~~v~~~l~~~~~~~~~v~~~Sf--~~~~l~~~~~ 150 (229)
T cd08562 88 TLADVLELARELGLGLNLEIKPDPGDEALTARVVAAALRELWPHASKLLLSSF--SLEALRAARR 150 (229)
T ss_pred CHHHHHHHHHhcCCEEEEEECCCCCccHHHHHHHHHHHHHhcCCcCCEEEECC--CHHHHHHHHH
Confidence 37777888888888888887742 23467888888753367899999 5677776665
No 178
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=55.25 E-value=69 Score=29.59 Aligned_cols=60 Identities=15% Similarity=0.086 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhcCCceEEeccchH------HHHHHHH----HhcCCCCCcEEEEeC-CCCHHHHHHHHHCCc
Q 025333 55 GVFRQQLELAKELKRPASIHCVRAF------GDLLEIM----KSVGPFPDGVIIHSY-LGSAEMVPELSKLGA 116 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~a~------~~~l~il----~~~~~~~~~~IiH~f-sg~~e~~~~~l~~G~ 116 (254)
+..++.++.|++.+.||+|-+-... +.+..++ ++... ..+.+|.- ..+.+...++++.|+
T Consensus 28 e~~~avi~AAe~~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~~--VPValHLDHg~~~e~i~~ai~~Gf 98 (307)
T PRK05835 28 EMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPH--IPVALHLDHGTTFESCEKAVKAGF 98 (307)
T ss_pred HHHHHHHHHHHHHCCCEEEEcCccHHhhCChHHHHHHHHHHHHhcCC--CeEEEECCCCCCHHHHHHHHHcCC
Confidence 6778899999999999999876522 2222333 33321 23666622 137899999999984
No 179
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=55.20 E-value=1.4e+02 Score=26.27 Aligned_cols=91 Identities=18% Similarity=0.170 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHhcCCceEEeccch-----HHHHHHHHHhcCCCCCcEEEEeCC-C----CHHHHHHHHHC-C-cEEee
Q 025333 53 QVGVFRQQLELAKELKRPASIHCVRA-----FGDLLEIMKSVGPFPDGVIIHSYL-G----SAEMVPELSKL-G-AYFSF 120 (254)
Q Consensus 53 Q~~vf~~ql~lA~~~~lPvilH~~~a-----~~~~l~il~~~~~~~~~~IiH~fs-g----~~e~~~~~l~~-G-~y~s~ 120 (254)
.-+.+...++..++.++||++=.|-. ..++.+.+.+.|. ..+.+|... | +++.++++.+. + +-+--
T Consensus 119 dp~~l~~iv~av~~~~~PVsvKiR~~~~~~~~~~~a~~l~~aGa--d~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ipIIg 196 (231)
T TIGR00736 119 NKELLKEFLTKMKELNKPIFVKIRGNCIPLDELIDALNLVDDGF--DGIHVDAMYPGKPYADMDLLKILSEEFNDKIIIG 196 (231)
T ss_pred CHHHHHHHHHHHHcCCCcEEEEeCCCCCcchHHHHHHHHHHcCC--CEEEEeeCCCCCchhhHHHHHHHHHhcCCCcEEE
Confidence 44567777887778899999999952 2356677777775 346778654 3 36667776663 3 53333
Q ss_pred cccccccchHHHHHHHHhCCCCcEEEec
Q 025333 121 SGFLMSMKAQKAKKMLKVVPSERILLET 148 (254)
Q Consensus 121 ~~~~~~~~~~~~~~~l~~ip~driLlET 148 (254)
+|.+. +.+...+++. .+.|-+++-+
T Consensus 197 NGgI~--s~eda~e~l~-~GAd~VmvgR 221 (231)
T TIGR00736 197 NNSID--DIESAKEMLK-AGADFVSVAR 221 (231)
T ss_pred ECCcC--CHHHHHHHHH-hCCCeEEEcH
Confidence 44443 4577888887 6899999877
No 180
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=55.02 E-value=1.4e+02 Score=25.73 Aligned_cols=85 Identities=11% Similarity=0.023 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHHHHHhcCCceEEeccchHHHHHHHHHhcCCCCCcEEEEeCC--CCHHHHHHHHHCCcEEeecccccc
Q 025333 49 DFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYL--GSAEMVPELSKLGAYFSFSGFLMS 126 (254)
Q Consensus 49 ~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a~~~~l~il~~~~~~~~~~IiH~fs--g~~e~~~~~l~~G~y~s~~~~~~~ 126 (254)
+.+.=.+..++.++++++++.+++||.+ .++..+.+. .+ +|--. .+...++.++..+.++|+|..
T Consensus 44 ~~~~~~~la~~l~~~~~~~~~~liInd~------~~lA~~~~a--dG--VHlg~~d~~~~~~r~~~~~~~~iG~S~H--- 110 (211)
T PRK03512 44 RDEEVEADVVAAIALGRRYQARLFINDY------WRLAIKHQA--YG--VHLGQEDLETADLNAIRAAGLRLGVSTH--- 110 (211)
T ss_pred CHHHHHHHHHHHHHHHHHhCCeEEEeCH------HHHHHHcCC--CE--EEcChHhCCHHHHHHhcCCCCEEEEeCC---
Confidence 3444557777888999999999999975 455655543 22 35321 123445555556778888752
Q ss_pred cchHHHHHHHHhCCCCcEEEec
Q 025333 127 MKAQKAKKMLKVVPSERILLET 148 (254)
Q Consensus 127 ~~~~~~~~~l~~ip~driLlET 148 (254)
+..++.++. +.+.|.+.+..
T Consensus 111 -~~~e~~~A~-~~gaDYi~lgp 130 (211)
T PRK03512 111 -DDMEIDVAL-AARPSYIALGH 130 (211)
T ss_pred -CHHHHHHHh-hcCCCEEEECC
Confidence 234444443 45778888764
No 181
>PF06187 DUF993: Protein of unknown function (DUF993); InterPro: IPR009334 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 4DNH_A.
Probab=53.63 E-value=76 Score=29.86 Aligned_cols=67 Identities=21% Similarity=0.302 Sum_probs=36.4
Q ss_pred ceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccch-------HHHH---H-HHHHhcCCCCCcEEEE
Q 025333 31 AAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRA-------FGDL---L-EIMKSVGPFPDGVIIH 99 (254)
Q Consensus 31 ~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a-------~~~~---l-~il~~~~~~~~~~IiH 99 (254)
.++-| +|-|+-......+.+.=...++.|++..++.|--+||=+-++ .+|- + ++|.+.. ..+|+|
T Consensus 109 ~ia~G-aGTD~L~~~~~~sld~V~~AY~eQ~~~ve~~Gg~~ILMASRaLA~~A~~p~DY~~VY~~lL~q~~---~PVILH 184 (382)
T PF06187_consen 109 RIACG-AGTDQLDPAPAASLDDVIAAYEEQLEAVEAAGGRVILMASRALAAVARSPDDYLRVYDRLLSQAD---EPVILH 184 (382)
T ss_dssp -EEEE-E--TTS---TT--HHHHHHHHHHHHHHHHHTT--EEE---HHHHHH--SHHHHHHHHHHHHHH-S---S-EEEE
T ss_pred cEEee-cCcCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEeehHHHHHhhCCHHHHHHHHHHHHHHcC---CCEEEE
Confidence 45666 898886543345677889999999999999875555544432 2332 2 4555553 358999
Q ss_pred eC
Q 025333 100 SY 101 (254)
Q Consensus 100 ~f 101 (254)
|.
T Consensus 185 WL 186 (382)
T PF06187_consen 185 WL 186 (382)
T ss_dssp EE
T ss_pred ec
Confidence 86
No 182
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=53.07 E-value=76 Score=27.73 Aligned_cols=53 Identities=11% Similarity=0.078 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCceEEeccc--------hHHHHHHHHHhcCCCCCcEEE---EeCC
Q 025333 50 FMDQVGVFRQQLELAKELKRPASIHCVR--------AFGDLLEIMKSVGPFPDGVII---HSYL 102 (254)
Q Consensus 50 ~~~Q~~vf~~ql~lA~~~~lPvilH~~~--------a~~~~l~il~~~~~~~~~~Ii---H~fs 102 (254)
++.-.+.+++..++|+++|+.+.+|... ...+++++++..+....++.+ |.+.
T Consensus 124 ~~~~~~~l~~l~~~a~~~gv~l~iE~~~~~~~~~~~t~~~~~~l~~~~~~~~v~~~~D~~h~~~ 187 (275)
T PRK09856 124 WGRLAENLSELCEYAENIGMDLILEPLTPYESNVVCNANDVLHALALVPSPRLFSMVDICAPYV 187 (275)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEecCCCCcccccCCHHHHHHHHHHcCCCcceeEEeecchhc
Confidence 4556678889999999999999999742 357889999987643333433 7543
No 183
>cd03310 CIMS_like CIMS - Cobalamine-independent methonine synthase, or MetE. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers both the N-and C-terminal barrel, and some single-barrel sequences, mostly from Archaea. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains from both barrels contribute to the binding o
Probab=53.00 E-value=1.7e+02 Score=26.23 Aligned_cols=116 Identities=16% Similarity=0.119 Sum_probs=59.9
Q ss_pred CceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHh-cCCceEEeccchHHHHHHHHHhcCCCCCcEEEEeCCCC---H
Q 025333 30 PAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKE-LKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGS---A 105 (254)
Q Consensus 30 ~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~-~~lPvilH~~~a~~~~l~il~~~~~~~~~~IiH~fsg~---~ 105 (254)
..+.|.|-.+-....+ .+...+.+++.++.... .+.++.+|+-.. ..++.+.+.+. ..+-+....+. .
T Consensus 166 ~~iqidEP~l~~~~~s----~~~~~~~~~~~~~~~~~~~~~~~~lHic~~--~~~~~l~~~~v--d~l~~D~~~~~~~~~ 237 (321)
T cd03310 166 VVVQIDEPSLGAVGAG----AFEDLEIVDAALEEVSLKSGGDVEVHLCAP--LDYEALLELGV--DVIGFDAAALPSKYL 237 (321)
T ss_pred cEEEeCCCcccccccc----ccchHHHHHHHHHHHhhccCCceEEEECCC--CCHHHHHhCCC--CEEEEecccCcccch
Confidence 3466666655443210 12334556555555443 455688998865 44555655543 22333344443 4
Q ss_pred HHHHHHHHCC-cE--Eeecccccc----cchH----H---HHHHHHhCC---CCcEEEecCCCCCC
Q 025333 106 EMVPELSKLG-AY--FSFSGFLMS----MKAQ----K---AKKMLKVVP---SERILLETDAPDAL 154 (254)
Q Consensus 106 e~~~~~l~~G-~y--~s~~~~~~~----~~~~----~---~~~~l~~ip---~driLlETD~P~~~ 154 (254)
+.+..+++.| .. ++++. +.. .+.. . ..+.+...+ .+|+++-+||....
T Consensus 238 ~~l~~~~~~g~~~~~lg~gv-id~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vtpscgL~~ 302 (321)
T cd03310 238 EDLKKLLRIGVRTLILGLVV-TDNEAKGRNAWKEIERLEKLVRRLEEPGEVLDEILYLTPDCGLAF 302 (321)
T ss_pred hHHHHHHhcCCceEEEEeee-cCCcccCCCHHHHHHHHHHHHHHhccchhhhhhceeeCCCccCCC
Confidence 6777777765 23 33332 111 1111 2 223344444 38899999998754
No 184
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=52.84 E-value=1.4e+02 Score=24.97 Aligned_cols=110 Identities=16% Similarity=0.189 Sum_probs=64.1
Q ss_pred hHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccchHHHHHHHHHhcCCCCCcE
Q 025333 17 NWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGV 96 (254)
Q Consensus 17 ~~l~~l~~ll~~~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a~~~~l~il~~~~~~~~~~ 96 (254)
+..+.++.+++.+ +.+| ++-. . ..+.....+..++..+++..++.++++| +-++++.+.+. ..+
T Consensus 22 ~~~~~~~~~~~~g-v~~v-~lr~--~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~a~~~ga--d~v 85 (212)
T PRK00043 22 DLLEVVEAALEGG-VTLV-QLRE--K----GLDTRERLELARALKELCRRYGVPLIVN------DRVDLALAVGA--DGV 85 (212)
T ss_pred cHHHHHHHHHhcC-CCEE-EEeC--C----CCCHHHHHHHHHHHHHHHHHhCCeEEEe------ChHHHHHHcCC--CEE
Confidence 4566777777643 3333 3321 1 1122344455666667888899999998 23466666664 334
Q ss_pred EEEeCCCCHHHHHHHHHCCcEEeecccccccchHHHHHHHHhCCCCcEEEe
Q 025333 97 IIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQKAKKMLKVVPSERILLE 147 (254)
Q Consensus 97 IiH~fsg~~e~~~~~l~~G~y~s~~~~~~~~~~~~~~~~l~~ip~driLlE 147 (254)
++|...-....++.+.+.|..+|++.. +..+.+++. ..+.|.|.+.
T Consensus 86 h~~~~~~~~~~~~~~~~~~~~~g~~~~----t~~e~~~a~-~~gaD~v~~~ 131 (212)
T PRK00043 86 HLGQDDLPVADARALLGPDAIIGLSTH----TLEEAAAAL-AAGADYVGVG 131 (212)
T ss_pred ecCcccCCHHHHHHHcCCCCEEEEeCC----CHHHHHHHh-HcCCCEEEEC
Confidence 444443344556666677888887642 334555544 4578999875
No 185
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=52.25 E-value=67 Score=29.24 Aligned_cols=96 Identities=13% Similarity=0.157 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHhcCC-ceEEeccchHHHHHHHHHhcCCCCCcEEEEeCC-CCH-HHHHHHHHCCc-EEeecc-cccc
Q 025333 52 DQVGVFRQQLELAKELKR-PASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYL-GSA-EMVPELSKLGA-YFSFSG-FLMS 126 (254)
Q Consensus 52 ~Q~~vf~~ql~lA~~~~l-PvilH~~~a~~~~l~il~~~~~~~~~~IiH~fs-g~~-e~~~~~l~~G~-y~s~~~-~~~~ 126 (254)
.-...++++++.+++.|. ++++|+-+....+++.+.+.+. . ++|+-. -+. +..+.+-+.-+ .=.+++ .+..
T Consensus 217 ~~~P~~k~i~~~i~~~g~~~~~lH~cG~~~~~~~~l~~~g~--d--~~~~~~~~~~~~~~~~~~~~~~l~Gni~~~~~l~ 292 (343)
T PF01208_consen 217 FILPYLKKIIDAIKEAGKDPVILHICGNTTPILDDLADLGA--D--VLSVDEKVDLAEAKRKLGDKIVLMGNIDPVSLLF 292 (343)
T ss_dssp HTHHHHHHHHHHHHHHETE-EEEEETTHG-GGHHHHHTSS---S--EEEE-TTS-HHHHHHHHTTSSEEEEEB-G-GGGG
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEECCchHHHHHHHHhcCC--C--EEEEcCCCCHHHHHHHhCCCeEEECCCCcccccc
Confidence 344557788888999999 9999999988889999988763 2 355432 234 33333322222 222333 1222
Q ss_pred cchHH----HHHHHHh--CCCCcEEEecCCC
Q 025333 127 MKAQK----AKKMLKV--VPSERILLETDAP 151 (254)
Q Consensus 127 ~~~~~----~~~~l~~--ip~driLlETD~P 151 (254)
.+.++ ++++++. -+-.++++.+|+.
T Consensus 293 gt~eei~~~v~~~i~~~~~~~~gfIl~~gc~ 323 (343)
T PF01208_consen 293 GTPEEIEEEVKRLIEEGLAGGGGFILSPGCG 323 (343)
T ss_dssp S-HHHHHHHHHHHHHHTHCTSSSEEBEBSS-
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCEEEeCCCc
Confidence 22333 5567773 5678999999984
No 186
>PRK14047 putative methyltransferase; Provisional
Probab=52.18 E-value=1.7e+02 Score=27.08 Aligned_cols=105 Identities=19% Similarity=0.209 Sum_probs=66.1
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCceEEeccchHHH-HHHHHHhcCC-CCCcEEEEeCCCCHHHHH-HH-HHCC-----cEE
Q 025333 48 IDFMDQVGVFRQQLELAKELKRPASIHCVRAFGD-LLEIMKSVGP-FPDGVIIHSYLGSAEMVP-EL-SKLG-----AYF 118 (254)
Q Consensus 48 ~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a~~~-~l~il~~~~~-~~~~~IiH~fsg~~e~~~-~~-l~~G-----~y~ 118 (254)
-+++.-+++..+|.+++.++|.|.++|......+ +.+.++-... ....+++-+..+....+- ++ -+.| +|=
T Consensus 49 FDk~~Ae~Lin~q~elsd~TGnp~~~~I~g~t~EA~~kYidfv~ei~d~PfliDS~~~~~R~aa~~yv~E~GladR~IYN 128 (310)
T PRK14047 49 FDREAAEKLVNLQEEMSDETGNPCVVHIFGTTPEAITNYIDFFSEVTDSPFLIDSPEGEVRAAAAEYVTEIGLADRAIYN 128 (310)
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHhhccCCCeEecCCCHHHHHHHHhhhhhhchhHHHHHh
Confidence 3678999999999999999999999999985443 3334432211 123467777655443332 22 2234 699
Q ss_pred eecccccccchHHHHHHHHhC-CCCcEEEecCCCCCCch
Q 025333 119 SFSGFLMSMKAQKAKKMLKVV-PSERILLETDAPDALPK 156 (254)
Q Consensus 119 s~~~~~~~~~~~~~~~~l~~i-p~driLlETD~P~~~p~ 156 (254)
|++..+. .+++ ++|++. ...-|+|-=|.-+.++.
T Consensus 129 SIn~s~~---~~Ei-eaL~~sdi~aaIiLaFn~~d~sv~ 163 (310)
T PRK14047 129 SINMSIH---ESEI-EALKQSDIDSSIVLGFNAMDSSLK 163 (310)
T ss_pred hcCccCC---HHHH-HHHHhcCCCeEEEEecCCCCCCHH
Confidence 9987542 3444 445544 45667777777654443
No 187
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=52.08 E-value=2e+02 Score=26.60 Aligned_cols=94 Identities=17% Similarity=0.315 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHh-c-CCceEEeccchH-------HHHHHHHHhcCCCCCcEEEEeC------CC--CHHHHHHHHHC-
Q 025333 53 QVGVFRQQLELAKE-L-KRPASIHCVRAF-------GDLLEIMKSVGPFPDGVIIHSY------LG--SAEMVPELSKL- 114 (254)
Q Consensus 53 Q~~vf~~ql~lA~~-~-~lPvilH~~~a~-------~~~l~il~~~~~~~~~~IiH~f------sg--~~e~~~~~l~~- 114 (254)
.-+.+..+++..++ . ++||++=+|-.+ .++.+++.+.|. .-+.+|+- +| +++.+.++.+.
T Consensus 119 ~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~--~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~ 196 (323)
T COG0042 119 NPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDAGA--DALTVHGRTRAQGYLGPADWDYIKELKEAV 196 (323)
T ss_pred CHHHHHHHHHHHHHhhCCCCeEEEEecccCcccccHHHHHHHHHhcCC--CEEEEecccHHhcCCCccCHHHHHHHHHhC
Confidence 44566666666554 3 499999999543 346777777764 34678944 44 67777777653
Q ss_pred C-cEEeecccccccchHHHHHHHHhCCCCcEEEecCC
Q 025333 115 G-AYFSFSGFLMSMKAQKAKKMLKVVPSERILLETDA 150 (254)
Q Consensus 115 G-~y~s~~~~~~~~~~~~~~~~l~~ip~driLlETD~ 150 (254)
. +-+-.||.+. +.++.+++++..+.|-+|+.-.+
T Consensus 197 ~~ipvi~NGdI~--s~~~a~~~l~~tg~DgVMigRga 231 (323)
T COG0042 197 PSIPVIANGDIK--SLEDAKEMLEYTGADGVMIGRGA 231 (323)
T ss_pred CCCeEEeCCCcC--CHHHHHHHHHhhCCCEEEEcHHH
Confidence 4 7777888775 46789999999999999998766
No 188
>PRK07213 chlorohydrolase; Provisional
Probab=51.61 E-value=1.8e+02 Score=26.94 Aligned_cols=59 Identities=15% Similarity=0.116 Sum_probs=43.4
Q ss_pred HHHHHhcCCc--eEEeccchHHHHHHHHHhcCCCCCcEEEEeCCC------CHHHHHHHHHCCcEEeeccc
Q 025333 61 LELAKELKRP--ASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLG------SAEMVPELSKLGAYFSFSGF 123 (254)
Q Consensus 61 l~lA~~~~lP--vilH~~~a~~~~l~il~~~~~~~~~~IiH~fsg------~~e~~~~~l~~G~y~s~~~~ 123 (254)
++.+.++|+- ++.||....++-++++++.+. .++||-+. ...-++++++.|+-++++..
T Consensus 218 v~~~~~~G~~~~~i~H~~~~~~~~i~~la~~g~----~v~~~P~sn~~l~~g~~~v~~l~~~Gv~v~lGTD 284 (375)
T PRK07213 218 IERLINLGFKPDFIVHATHPSNDDLELLKENNI----PVVVCPRANASFNVGLPPLNEMLEKGILLGIGTD 284 (375)
T ss_pred HHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCC----cEEECCcchhhhccCCccHHHHHHCCCEEEEeeC
Confidence 5667777776 889999988888999988763 35665432 23446788889999988854
No 189
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=51.20 E-value=1.8e+02 Score=25.87 Aligned_cols=113 Identities=19% Similarity=0.192 Sum_probs=63.1
Q ss_pred HHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHH-------------HHHHHHHHHHHHh-cCCceEEeccc------
Q 025333 18 WFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQ-------------VGVFRQQLELAKE-LKRPASIHCVR------ 77 (254)
Q Consensus 18 ~l~~l~~ll~~~~~~aIGEiGLD~~~~~~~~~~~~Q-------------~~vf~~ql~lA~~-~~lPvilH~~~------ 77 (254)
.++.+..+.+ ..+-+| |+|++|...-.. ---.| .++|+-.-++.++ .+.|++ |.-.
T Consensus 26 ~~~~~~~l~~-~Gad~i-ElGiPfsDP~aD-GpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv-~m~Y~Npi~~ 101 (256)
T TIGR00262 26 SLEIIKTLIE-AGADAL-ELGVPFSDPLAD-GPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIG-LLTYYNLIFR 101 (256)
T ss_pred HHHHHHHHHH-cCCCEE-EECCCCCCCCCc-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEE-EEEeccHHhh
Confidence 3444555544 456667 999999753111 01112 2455555555555 588987 7664
Q ss_pred -hHHHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHH----HHCCcEEeecccccccchHHHHHHHHhC
Q 025333 78 -AFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPEL----SKLGAYFSFSGFLMSMKAQKAKKMLKVV 139 (254)
Q Consensus 78 -a~~~~l~il~~~~~~~~~~IiH~fsg~~e~~~~~----l~~G~y~s~~~~~~~~~~~~~~~~l~~i 139 (254)
..++.++.+.+.|. ..+++|-- +.++..++ .+.|+.+.+--.++. ..++++.+++..
T Consensus 102 ~G~e~f~~~~~~aGv--dgviipDl--p~ee~~~~~~~~~~~gl~~i~lv~P~T-~~eri~~i~~~~ 163 (256)
T TIGR00262 102 KGVEEFYAKCKEVGV--DGVLVADL--PLEESGDLVEAAKKHGVKPIFLVAPNA-DDERLKQIAEKS 163 (256)
T ss_pred hhHHHHHHHHHHcCC--CEEEECCC--ChHHHHHHHHHHHHCCCcEEEEECCCC-CHHHHHHHHHhC
Confidence 23678888888875 45788854 33444433 346765543322222 235566666654
No 190
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=51.18 E-value=90 Score=29.05 Aligned_cols=63 Identities=11% Similarity=0.202 Sum_probs=40.6
Q ss_pred HHHHHHhcCCceEEeccch----HHHHHHHHHhcCCCC-CcEEEEeCCC--------CHHHHHHHHH-CCcEEeecc
Q 025333 60 QLELAKELKRPASIHCVRA----FGDLLEIMKSVGPFP-DGVIIHSYLG--------SAEMVPELSK-LGAYFSFSG 122 (254)
Q Consensus 60 ql~lA~~~~lPvilH~~~a----~~~~l~il~~~~~~~-~~~IiH~fsg--------~~e~~~~~l~-~G~y~s~~~ 122 (254)
.|+.+.+.|+||+|=+.-+ ....++.+++.|... .-+++||.++ +...+..+.+ .++=++++.
T Consensus 125 LL~~~A~~gkPvilStGmatl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f~~pVG~Sd 201 (329)
T TIGR03569 125 LLKKIARFGKPVILSTGMATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAFDLPVGYSD 201 (329)
T ss_pred HHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHhCCCEEECC
Confidence 4666778899999998874 445667777766421 2356699875 3444444443 466677664
No 191
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=50.87 E-value=35 Score=26.65 Aligned_cols=55 Identities=22% Similarity=0.204 Sum_probs=32.7
Q ss_pred HHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccc-hHHHHHH
Q 025333 19 FSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVR-AFGDLLE 84 (254)
Q Consensus 19 l~~l~~ll~~~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~-a~~~~l~ 84 (254)
+..+-+.+.+.++.|+| |+...+.. ++=+..+++|.++++||+.--.+ .+.++.+
T Consensus 61 ~~~~i~~L~~~~~agL~-i~~~~~~~----------~iP~~~i~~A~~~~lPli~ip~~~~f~~I~~ 116 (123)
T PF07905_consen 61 LREFIRELAEKGAAGLG-IKTGRYLD----------EIPEEIIELADELGLPLIEIPWEVPFSDITR 116 (123)
T ss_pred HHHHHHHHHHCCCeEEE-EeccCccc----------cCCHHHHHHHHHcCCCEEEeCCCCCHHHHHH
Confidence 44443334456677887 66654332 12256789999999999865544 3444443
No 192
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=50.74 E-value=2e+02 Score=26.43 Aligned_cols=94 Identities=12% Similarity=0.089 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhc-CCceEEeccchHHHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCcEEeecccc-----ccc
Q 025333 54 VGVFRQQLELAKEL-KRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFL-----MSM 127 (254)
Q Consensus 54 ~~vf~~ql~lA~~~-~lPvilH~~~a~~~~l~il~~~~~~~~~~IiH~fsg~~e~~~~~l~~G~y~s~~~~~-----~~~ 127 (254)
...+++.++..++. +.|+++|+.+....+++.+.+.+. ..+.+.+-..+...+++.+.-. +.+.|.+ ...
T Consensus 197 ~P~~krIi~~ik~~~g~piilH~cG~~~~~l~~~~e~g~--dvl~~d~~~~dl~eak~~~g~k--~~l~GNlDp~~L~~~ 272 (321)
T cd03309 197 LPRMQRIFDFLRSNTSALIVHHSCGAAASLVPSMAEMGV--DSWNVVMTANNTAELRRLLGDK--VVLAGAIDDVALDTA 272 (321)
T ss_pred HHHHHHHHHHHHhccCCceEEEeCCCcHHHHHHHHHcCC--CEEEecCCCCCHHHHHHHhCCC--eEEEcCCChHHhcCC
Confidence 34456777777776 889999999988788888888764 2122222223666666655422 2233321 111
Q ss_pred c-----hHHHHHHHHhCCC-CcEEEecCCC
Q 025333 128 K-----AQKAKKMLKVVPS-ERILLETDAP 151 (254)
Q Consensus 128 ~-----~~~~~~~l~~ip~-driLlETD~P 151 (254)
. .+.++++++.++. .+..+-+++.
T Consensus 273 ~t~E~i~~~v~~~l~~~g~~~~fIf~~~~~ 302 (321)
T cd03309 273 TWPEEDARGVAKAAAECAPIHPFISAPTAG 302 (321)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCEEeCccCC
Confidence 1 1346678887765 7777777664
No 193
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=50.66 E-value=95 Score=28.32 Aligned_cols=61 Identities=20% Similarity=0.171 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhcCCceEEeccch-------HHHHHHHHH----hcCCCCCcEEEEeC-CCCHHHHHHHHHCCc
Q 025333 55 GVFRQQLELAKELKRPASIHCVRA-------FGDLLEIMK----SVGPFPDGVIIHSY-LGSAEMVPELSKLGA 116 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~a-------~~~~l~il~----~~~~~~~~~IiH~f-sg~~e~~~~~l~~G~ 116 (254)
+..+..++.|++.+.||+|-.-.. ...+..+++ +... ...+.+|-- ..+.+.++++++.|+
T Consensus 29 e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~~-~vPV~lHLDHg~~~e~i~~ai~~Gf 101 (286)
T PRK08610 29 EFTQAILEASQEENAPVILGVSEGAARYMSGFYTVVKMVEGLMHDLNI-TIPVAIHLDHGSSFEKCKEAIDAGF 101 (286)
T ss_pred HHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCC-CCCEEEECCCCCCHHHHHHHHHcCC
Confidence 677889999999999999976542 233344443 3321 123666611 136899999999984
No 194
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=49.73 E-value=97 Score=28.20 Aligned_cols=59 Identities=15% Similarity=0.100 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhcCCceEEeccch------HHHHHH----HHHhcCCCCCcEEEEeC-CCCHHHHHHHHHCCc
Q 025333 55 GVFRQQLELAKELKRPASIHCVRA------FGDLLE----IMKSVGPFPDGVIIHSY-LGSAEMVPELSKLGA 116 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~a------~~~~l~----il~~~~~~~~~~IiH~f-sg~~e~~~~~l~~G~ 116 (254)
+..+..++.|++.+.||+|-.-.. .+.+.. +.++.. ..+.+|-- ..+.+.+.++++.|+
T Consensus 29 e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~---VPValHLDH~~~~e~i~~ai~~Gf 98 (284)
T PRK12857 29 EIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKAS---VPVALHLDHGTDFEQVMKCIRNGF 98 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHHHHCC---CCEEEECCCCCCHHHHHHHHHcCC
Confidence 678899999999999999866542 122323 333443 23666521 136889999999874
No 195
>PRK13404 dihydropyrimidinase; Provisional
Probab=49.26 E-value=72 Score=30.91 Aligned_cols=24 Identities=13% Similarity=0.098 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhcCCceEEeccch
Q 025333 55 GVFRQQLELAKELKRPASIHCVRA 78 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~a 78 (254)
..+.+.++.|+++|++|.+|+.+.
T Consensus 166 ~~l~~~~~~a~~~g~~V~~Hae~~ 189 (477)
T PRK13404 166 RQILDVLAVARRHGAMVMVHAENH 189 (477)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCH
Confidence 468888899999999999999863
No 196
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=49.12 E-value=38 Score=31.84 Aligned_cols=55 Identities=22% Similarity=0.274 Sum_probs=34.6
Q ss_pred HHHHHHHHHhc-CCceEEeccchH-HHHHHHHHhcCCCCCcEEEE-eCCCCHHHHHHHHHCCc
Q 025333 57 FRQQLELAKEL-KRPASIHCVRAF-GDLLEIMKSVGPFPDGVIIH-SYLGSAEMVPELSKLGA 116 (254)
Q Consensus 57 f~~ql~lA~~~-~lPvilH~~~a~-~~~l~il~~~~~~~~~~IiH-~fsg~~e~~~~~l~~G~ 116 (254)
|++.-++++.. +.|+++|-.... .+++..+..+|. -+| .+.-+.+.++++++.|+
T Consensus 214 fdrL~eI~~~v~~vPLVLHGgSG~~~~~~~~~~~~g~-----~~~~~~G~~~e~i~~ai~~GI 271 (347)
T PRK09196 214 IDRIKEIHARLPNTHLVMHGSSSVPQELLDIINEYGG-----DMPETYGVPVEEIQEGIKHGV 271 (347)
T ss_pred HHHHHHHHhcCCCCCEEEeCCCCCCHHHHHHHHHhcC-----CccccCCCCHHHHHHHHHCCC
Confidence 33444556666 688888877653 566666666653 233 34446778888888873
No 197
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=49.12 E-value=1.5e+02 Score=26.98 Aligned_cols=59 Identities=12% Similarity=0.133 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhcCCceEEeccch------HHHHHH----HHHhcCCCCCcEEEEeC-CCCHHHHHHHHHCCc
Q 025333 55 GVFRQQLELAKELKRPASIHCVRA------FGDLLE----IMKSVGPFPDGVIIHSY-LGSAEMVPELSKLGA 116 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~a------~~~~l~----il~~~~~~~~~~IiH~f-sg~~e~~~~~l~~G~ 116 (254)
+..++.++.|++.+.||+|-+-.. .+.+.. +.++.. ..+.+|-- ..+.+.+.++++.|+
T Consensus 27 e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~---VPValHLDHg~~~e~i~~ai~~GF 96 (282)
T TIGR01858 27 ETIQAVVETAAEMRSPVILAGTPGTFKHAGTEYIVALCSAASTTYN---MPLALHLDHHESLDDIRQKVHAGV 96 (282)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHCC---CCEEEECCCCCCHHHHHHHHHcCC
Confidence 678899999999999999977542 222333 333443 23666622 236899999999984
No 198
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=48.90 E-value=1.3e+02 Score=26.93 Aligned_cols=139 Identities=12% Similarity=0.062 Sum_probs=66.5
Q ss_pred CChhHHHHHHHHhhcCCceEEEeecCCCCCCCC--CCCHHHHHHHHHHHHHHHHhcCCceEEeccch--HHHHHHHHHhc
Q 025333 14 RTPNWFSTLKEFFEITPAAAVGEIGLDKGSKGR--EIDFMDQVGVFRQQLELAKELKRPASIHCVRA--FGDLLEIMKSV 89 (254)
Q Consensus 14 ~~~~~l~~l~~ll~~~~~~aIGEiGLD~~~~~~--~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a--~~~~l~il~~~ 89 (254)
.+.+....+.+.|.+..+-.| |+|..-..... ....-...+.+++..+..+ .+.++..+++.. ..+.++.....
T Consensus 17 f~~~~~~~ia~~L~~~GVd~I-EvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~a~~~ 94 (266)
T cd07944 17 FGDEFVKAIYRALAAAGIDYV-EIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDIDLLEPASGS 94 (266)
T ss_pred CCHHHHHHHHHHHHHCCCCEE-EeecCCCCccccCCCccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCHHHHHHHhcC
Confidence 355667777777877777777 89965432100 0000011345555555543 356677766653 23334444444
Q ss_pred CCCCCcEEEEeCCCCHHHHH----HHHHCCcEEeecccccc-cchHHHHHH---HHhCCCCcEEEecCCCCCCch
Q 025333 90 GPFPDGVIIHSYLGSAEMVP----ELSKLGAYFSFSGFLMS-MKAQKAKKM---LKVVPSERILLETDAPDALPK 156 (254)
Q Consensus 90 ~~~~~~~IiH~fsg~~e~~~----~~l~~G~y~s~~~~~~~-~~~~~~~~~---l~~ip~driLlETD~P~~~p~ 156 (254)
+..-.++.++. ...+.+. .+.++|+.+.++..-.+ -..+.+.++ +...+.++|-+-==.-.+.|.
T Consensus 95 gv~~iri~~~~--~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~ 167 (266)
T cd07944 95 VVDMIRVAFHK--HEFDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIVDSFGSMYPE 167 (266)
T ss_pred CcCEEEEeccc--ccHHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHH
Confidence 43111222222 2333333 33456887777643222 122333333 345678887664333344443
No 199
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=48.77 E-value=1.8e+02 Score=25.35 Aligned_cols=90 Identities=12% Similarity=0.154 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhcCCceEEeccch----HHHHHHHHHhcCCCCCcEEEE-eCCC---CHHHHHHHHHCCcEEeeccccc
Q 025333 54 VGVFRQQLELAKELKRPASIHCVRA----FGDLLEIMKSVGPFPDGVIIH-SYLG---SAEMVPELSKLGAYFSFSGFLM 125 (254)
Q Consensus 54 ~~vf~~ql~lA~~~~lPvilH~~~a----~~~~l~il~~~~~~~~~~IiH-~fsg---~~e~~~~~l~~G~y~s~~~~~~ 125 (254)
-+.+...++..++.++||++=.|-. ..++.+.+.+.|.. .+++| .+.| +++.++++. .++.+--+|.+.
T Consensus 125 p~~l~eiv~avr~~~~pVsvKir~g~~~~~~~la~~l~~aG~d--~ihv~~~~~g~~ad~~~I~~i~-~~ipVIgnGgI~ 201 (233)
T cd02911 125 PERLSEFIKALKETGVPVSVKIRAGVDVDDEELARLIEKAGAD--IIHVDAMDPGNHADLKKIRDIS-TELFIIGNNSVT 201 (233)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEcCCcCcCHHHHHHHHHHhCCC--EEEECcCCCCCCCcHHHHHHhc-CCCEEEEECCcC
Confidence 4566666776677799999999843 34566677777642 23333 2333 355555553 466666666665
Q ss_pred ccchHHHHHHHHhCCCCcEEEecC
Q 025333 126 SMKAQKAKKMLKVVPSERILLETD 149 (254)
Q Consensus 126 ~~~~~~~~~~l~~ip~driLlETD 149 (254)
+.+...+++. .+.|-+++.+=
T Consensus 202 --s~eda~~~l~-~GaD~VmiGR~ 222 (233)
T cd02911 202 --TIESAKEMFS-YGADMVSVARA 222 (233)
T ss_pred --CHHHHHHHHH-cCCCEEEEcCC
Confidence 4577888887 57999998875
No 200
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=48.68 E-value=1.2e+02 Score=27.65 Aligned_cols=59 Identities=12% Similarity=0.146 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhcCCceEEeccch------HHHHHH----HHHhcCCCCCcEEEEeC-CCCHHHHHHHHHCCc
Q 025333 55 GVFRQQLELAKELKRPASIHCVRA------FGDLLE----IMKSVGPFPDGVIIHSY-LGSAEMVPELSKLGA 116 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~a------~~~~l~----il~~~~~~~~~~IiH~f-sg~~e~~~~~l~~G~ 116 (254)
+..++.++.|.+.+.||+|-.-.. .+.+.. +.++.+ ..+.+|-- ..+.+.+.++++.|+
T Consensus 29 e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~~---VPValHLDH~~~~e~i~~ai~~Gf 98 (284)
T PRK12737 29 ETLQVVVETAAELRSPVILAGTPGTFSYAGTDYIVAIAEVAARKYN---IPLALHLDHHEDLDDIKKKVRAGI 98 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHHHHHHHHHHHHCC---CCEEEECCCCCCHHHHHHHHHcCC
Confidence 778899999999999999976642 222333 333443 23666622 136889999999985
No 201
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=48.64 E-value=1.2e+02 Score=27.62 Aligned_cols=62 Identities=19% Similarity=0.231 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhcCCceEEeccchH------HHHHHHHHhcC-CCCCcEEEEeCC-CCHHHHHHHHHCCc
Q 025333 55 GVFRQQLELAKELKRPASIHCVRAF------GDLLEIMKSVG-PFPDGVIIHSYL-GSAEMVPELSKLGA 116 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~a~------~~~l~il~~~~-~~~~~~IiH~fs-g~~e~~~~~l~~G~ 116 (254)
+..+..++.|++.+.||+|-.-... +.+..+++... .....+.+|--= .+.+.+.++++.|+
T Consensus 24 e~~~avi~AAe~~~sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~~VPV~lHLDH~~~~~~i~~ai~~Gf 93 (276)
T cd00947 24 ETLKAILEAAEETRSPVILQISEGAIKYAGLELLVAMVKAAAERASVPVALHLDHGSSFELIKRAIRAGF 93 (276)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCC
Confidence 5778899999999999999776422 23333333221 011236665111 35888999999883
No 202
>PRK14000 potassium-transporting ATPase subunit C; Provisional
Probab=48.21 E-value=15 Score=31.46 Aligned_cols=42 Identities=12% Similarity=0.119 Sum_probs=31.8
Q ss_pred cccHHHHHHHHHhccCCCHHHHHHHHHHHHH-HhcCCCCCccc
Q 025333 210 PANIHNVLDYVASLLDMTKEELAELSYRNAI-RLFSYEGSKIL 251 (254)
Q Consensus 210 P~~l~~v~~~lA~i~~~~~eev~~~~~~N~~-~~f~~~~~~~~ 251 (254)
|..-..=+..||+.+|+++++|.+++.+|.. ++||-+..++|
T Consensus 134 p~aA~~Qv~RVA~argls~~~v~~LV~~~t~~~~~Ge~~VNVL 176 (185)
T PRK14000 134 VDNAKQQVKRIAKERNIDASKINHLIDENKQASPMADDYVNVL 176 (185)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHhccCCcCCCCcchHH
Confidence 5555555678999999999999999999998 45554444443
No 203
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=47.99 E-value=2.7e+02 Score=27.07 Aligned_cols=86 Identities=13% Similarity=0.105 Sum_probs=54.7
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCceEEeccchHHHHHHHHHhcCCCCCcEEEEeCC--CCHHHHHHHHHCCcEEeeccccc
Q 025333 48 IDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYL--GSAEMVPELSKLGAYFSFSGFLM 125 (254)
Q Consensus 48 ~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a~~~~l~il~~~~~~~~~~IiH~fs--g~~e~~~~~l~~G~y~s~~~~~~ 125 (254)
.+.+...+..++..++++++|.+++|+.+ .++..+.+. .+ +|--. .....++.++..|..+|+|..
T Consensus 241 ls~~el~~la~~l~~l~~~~gv~LiIND~------~dlAl~~gA--dG--VHLGQeDL~~~~aR~ilg~~~iIGvStH-- 308 (437)
T PRK12290 241 PQQADLEQQIIRAIALGREYNAQVFINDY------WQLAIKHQA--YG--VHLGQEDLEEANLAQLTDAGIRLGLSTH-- 308 (437)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCEEEEECH------HHHHHHcCC--CE--EEcChHHcchhhhhhhcCCCCEEEEecC--
Confidence 34556677788888999999999999975 455555543 22 35211 223455666667888888852
Q ss_pred ccchHHHHHHHHhCCCCcEEEec
Q 025333 126 SMKAQKAKKMLKVVPSERILLET 148 (254)
Q Consensus 126 ~~~~~~~~~~l~~ip~driLlET 148 (254)
+..++.++. ..+.|.|.+.-
T Consensus 309 --s~eEl~~A~-~~gaDYI~lGP 328 (437)
T PRK12290 309 --GYYELLRIV-QIQPSYIALGH 328 (437)
T ss_pred --CHHHHHHHh-hcCCCEEEECC
Confidence 234444443 45778888754
No 204
>cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin. The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues.
Probab=47.68 E-value=86 Score=29.68 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhcCCceEEeccc
Q 025333 55 GVFRQQLELAKELKRPASIHCVR 77 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~ 77 (254)
+.+++.++.|++++++|.+|+..
T Consensus 162 ~~l~~~~~~a~~~g~~v~~H~E~ 184 (447)
T cd01314 162 EELLDVLKRAKELGALVMVHAEN 184 (447)
T ss_pred HHHHHHHHHHHhcCCeEEEEcCC
Confidence 56788889999999999999864
No 205
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=47.23 E-value=83 Score=28.65 Aligned_cols=57 Identities=19% Similarity=0.166 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhcCCceEEeccchH------HHHHH----HHHhcCCCCCcEEE---EeCCCCHHHHHHHHHCCc
Q 025333 55 GVFRQQLELAKELKRPASIHCVRAF------GDLLE----IMKSVGPFPDGVII---HSYLGSAEMVPELSKLGA 116 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~a~------~~~l~----il~~~~~~~~~~Ii---H~fsg~~e~~~~~l~~G~ 116 (254)
+..+..++.|++.+-||+|..-... +.+.. +.++.+ ..+.+ |+. +.+.++++++.|+
T Consensus 28 e~~~avi~AAe~~~sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~~~---vPValHLDH~~--~~e~i~~ai~~Gf 97 (287)
T PF01116_consen 28 ETARAVIEAAEELNSPVILQISPSEVKYMGLEYLAAMVKAAAEEAS---VPVALHLDHGK--DFEDIKRAIDAGF 97 (287)
T ss_dssp HHHHHHHHHHHHTTS-EEEEEEHHHHHHHHHHHHHHHHHHHHHHST---SEEEEEEEEE---SHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhCCCEEEEcchhhhhhhhHHHHHHHHHHHHHHcC---CCEEeecccCC--CHHHHHHHHHhCc
Confidence 6788899999999999999877532 22222 333343 23444 565 5889999999874
No 206
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=47.08 E-value=2e+02 Score=25.21 Aligned_cols=59 Identities=10% Similarity=0.029 Sum_probs=36.1
Q ss_pred ChhHHHHHHHHhhcCCceEEE-eecCCC--CCCC-CCCCHHHHHHHHHHHHHHHHhcCCceEE
Q 025333 15 TPNWFSTLKEFFEITPAAAVG-EIGLDK--GSKG-REIDFMDQVGVFRQQLELAKELKRPASI 73 (254)
Q Consensus 15 ~~~~l~~l~~ll~~~~~~aIG-EiGLD~--~~~~-~~~~~~~Q~~vf~~ql~lA~~~~lPvil 73 (254)
++..++.+.+++++..+...+ .++... .... .....+...+.+++.+++|+++|.+++.
T Consensus 55 ~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~ 117 (283)
T PRK13209 55 SREQRLALVNALVETGFRVNSMCLSAHRRFPLGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQ 117 (283)
T ss_pred CHHHHHHHHHHHHHcCCceeEEecccccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 566788888888776542221 122211 1110 1112345677899999999999999774
No 207
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=47.01 E-value=1.7e+02 Score=25.94 Aligned_cols=76 Identities=16% Similarity=0.129 Sum_probs=50.8
Q ss_pred CChhHHHHHHHHh-hcCCceEEEeecCCCCCCC-------CCCCHHHHHHHHHHHHHHHHh----cCCceE--EeccchH
Q 025333 14 RTPNWFSTLKEFF-EITPAAAVGEIGLDKGSKG-------REIDFMDQVGVFRQQLELAKE----LKRPAS--IHCVRAF 79 (254)
Q Consensus 14 ~~~~~l~~l~~ll-~~~~~~aIGEiGLD~~~~~-------~~~~~~~Q~~vf~~ql~lA~~----~~lPvi--lH~~~a~ 79 (254)
.+.+.++.|.+.+ ..-.+.+||=.|-+..... ..-+++.|.+--...++-... -+.+|+ =|+.+++
T Consensus 17 fY~~Fl~~L~~~l~~~~~i~~ish~Gh~~~~~~~~~~~~~~~~sL~~QI~hk~~~i~~~~~~~~~~~~~liLiGHSIGay 96 (266)
T PF10230_consen 17 FYEEFLSALYEKLNPQFEILGISHAGHSTSPSNSKFSPNGRLFSLQDQIEHKIDFIKELIPQKNKPNVKLILIGHSIGAY 96 (266)
T ss_pred HHHHHHHHHHHhCCCCCeeEEecCCCCcCCcccccccCCCCccCHHHHHHHHHHHHHHHhhhhcCCCCcEEEEeCcHHHH
Confidence 3556677777776 3456899999998766432 123567888777777766555 445544 4888876
Q ss_pred HHHHHHHHhcC
Q 025333 80 GDLLEIMKSVG 90 (254)
Q Consensus 80 ~~~l~il~~~~ 90 (254)
-+++++++..
T Consensus 97 -i~levl~r~~ 106 (266)
T PF10230_consen 97 -IALEVLKRLP 106 (266)
T ss_pred -HHHHHHHhcc
Confidence 4567777765
No 208
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=46.70 E-value=39 Score=26.11 Aligned_cols=30 Identities=13% Similarity=0.185 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCceEEeccchH
Q 025333 50 FMDQVGVFRQQLELAKELKRPASIHCVRAF 79 (254)
Q Consensus 50 ~~~Q~~vf~~ql~lA~~~~lPvilH~~~a~ 79 (254)
...+...+-.+++.+...+.||.|||..+.
T Consensus 63 ~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~ 92 (139)
T cd00127 63 ISKYFDEAVDFIDDAREKGGKVLVHCLAGV 92 (139)
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEECCCCC
Confidence 344555555666666677888999998653
No 209
>TIGR01114 mtrH N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit H. coenzyme M methyltransferase subunit H in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=46.30 E-value=2.1e+02 Score=26.50 Aligned_cols=105 Identities=16% Similarity=0.180 Sum_probs=65.5
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCceEEeccchHHH-HHHHHHhcCC-CCCcEEEEeCCCCHHHHH--HHHHCC-----cEE
Q 025333 48 IDFMDQVGVFRQQLELAKELKRPASIHCVRAFGD-LLEIMKSVGP-FPDGVIIHSYLGSAEMVP--ELSKLG-----AYF 118 (254)
Q Consensus 48 ~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a~~~-~l~il~~~~~-~~~~~IiH~fsg~~e~~~--~~l~~G-----~y~ 118 (254)
-+++.-+++..+|.+++..+|.|.++|......+ +.+.++-... ....+++-+.++....+- ..-+.| +|=
T Consensus 49 FDk~~Ae~Lin~q~elsd~tGnp~~~qI~~~t~EA~~kYidfv~~i~d~PfliDS~~~~~r~aa~ky~~E~GladR~IYN 128 (314)
T TIGR01114 49 FDKAAAETLIKTQEELSDATGNPYVVQIFGETPEAIVRYIDWVADITDAPFLIDSTSGEARAAAAKYATEVGLADRAIYN 128 (314)
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHhcccCCCeEecCCcHHHHHHHhhhhhhhchHHHHHHh
Confidence 3678999999999999999999999999985443 3344433221 223367777655433332 222334 688
Q ss_pred eecccccccchHHHHHHHHhCCCCcEEEecCCCCCCc
Q 025333 119 SFSGFLMSMKAQKAKKMLKVVPSERILLETDAPDALP 155 (254)
Q Consensus 119 s~~~~~~~~~~~~~~~~l~~ip~driLlETD~P~~~p 155 (254)
|++.... .+++..+-+.-...-|+|-=|.-+.++
T Consensus 129 SIn~s~~---~eEieaL~esdi~aaIiLaFnp~dpsv 162 (314)
T TIGR01114 129 SINASIE---EEEIQVLKESDLSAAIVLAFNPMDPTV 162 (314)
T ss_pred hcCccCC---HHHHHHHHhcCCCeEEEEecCCCCCCH
Confidence 9987542 344544444444556777777655444
No 210
>PRK08044 allantoinase; Provisional
Probab=46.21 E-value=75 Score=30.50 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhcCCceEEeccch
Q 025333 55 GVFRQQLELAKELKRPASIHCVRA 78 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~a 78 (254)
..+.+.++.++++|+||++||.+.
T Consensus 167 ~~l~~~~~~~~~~~~~v~~H~E~~ 190 (449)
T PRK08044 167 WQFYKGAQKLGELGQPVLVHCENA 190 (449)
T ss_pred HHHHHHHHHHHhcCCEEEEecCCH
Confidence 366677788888999999999974
No 211
>PF13147 Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2PUZ_B 2GOK_B 3HM7_E 3D6N_A 1XRT_A 1XRF_A 1YNY_B 1K1D_F ....
Probab=46.11 E-value=1.8e+02 Score=24.49 Aligned_cols=34 Identities=15% Similarity=0.273 Sum_probs=27.3
Q ss_pred cHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCC
Q 025333 212 NIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYE 246 (254)
Q Consensus 212 ~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~ 246 (254)
++......+ ...|++++++.+.++.|..++|++.
T Consensus 256 ~~~~~~~~~-~~~gl~~~~al~~~T~~pA~~lgl~ 289 (304)
T PF13147_consen 256 LLHEAMRLA-VRAGLSPEEALRAATSNPARILGLD 289 (304)
T ss_dssp HHHHHHHHH-HHTSSTHHHHHHHHTHHHHHHTTBT
T ss_pred cchhhhhHH-hhcCCCHHHHHHHHHHHHHHHhCCC
Confidence 445555444 4489999999999999999999994
No 212
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=45.91 E-value=1.1e+02 Score=27.13 Aligned_cols=59 Identities=24% Similarity=0.336 Sum_probs=33.0
Q ss_pred EEEE-----eCCCCHHHHHHHHHCCcEEeeccc-ccccchHHHHHH-HHhC--CCCcEEEecCCCCCCc
Q 025333 96 VIIH-----SYLGSAEMVPELSKLGAYFSFSGF-LMSMKAQKAKKM-LKVV--PSERILLETDAPDALP 155 (254)
Q Consensus 96 ~IiH-----~fsg~~e~~~~~l~~G~y~s~~~~-~~~~~~~~~~~~-l~~i--p~driLlETD~P~~~p 155 (254)
+|.| .+.-++..+.++++.|+|+-++.. +...-.+++++. ++-+ .+-. ++-||+.-...
T Consensus 133 IIAHPERn~~i~kn~~~lyeLid~ga~sQvts~Sl~GlfGK~ikK~a~~~iE~~L~h-FiASDAHn~~~ 200 (254)
T COG4464 133 IIAHPERNRAIQKNPYLLYELIDKGAYSQVTSSSLAGLFGKKIKKFALQLIEANLVH-FIASDAHNVDK 200 (254)
T ss_pred eeechhhHHHHHhChHHHHHHHhcccceeechHhHHhhhhHHHHHHHHHHHHcccce-eeeccccccCC
Confidence 5667 345577888899999999988843 222112333322 2211 2222 45778766543
No 213
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=45.61 E-value=53 Score=30.31 Aligned_cols=50 Identities=20% Similarity=0.092 Sum_probs=31.6
Q ss_pred HHHhcCCceEEeccch-HHHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCc
Q 025333 63 LAKELKRPASIHCVRA-FGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGA 116 (254)
Q Consensus 63 lA~~~~lPvilH~~~a-~~~~l~il~~~~~~~~~~IiH~fsg~~e~~~~~l~~G~ 116 (254)
+++..+.|++||.... .+++++.+.++|.. +=-.+.-+.+.++++++.|+
T Consensus 199 I~~~~~iPLVLHGgSGip~e~~~~~~~~g~~----~~~~~g~~~e~~~kai~~GI 249 (307)
T PRK05835 199 VKRLTNIPLVLHGASAIPDDVRKSYLDAGGD----LKGSKGVPFEFLQESVKGGI 249 (307)
T ss_pred HHHHhCCCEEEeCCCCCchHHhhhhhhhccc----cccccCCCHHHHHHHHHcCc
Confidence 4556678888887765 44567777666521 11345556677888888763
No 214
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=45.56 E-value=2.5e+02 Score=25.98 Aligned_cols=95 Identities=20% Similarity=0.212 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCceEEeccchHHH----HHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHH---------C
Q 025333 48 IDFMDQVGVFRQQLELAKELKRPASIHCVRAFGD----LLEIMKSVGPFPDGVIIHSYLGSAEMVPELSK---------L 114 (254)
Q Consensus 48 ~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a~~~----~l~il~~~~~~~~~~IiH~fsg~~e~~~~~l~---------~ 114 (254)
-+++.-+++..+|.+++.++|.|..+|......+ .++.+.+... ..+++-+- +++.....++ +
T Consensus 49 FDk~~Ae~Li~~~~elsd~tg~p~~~~v~~~~~eam~k~I~~v~~~~d--~Pl~IDSt--~p~a~eaaLk~~~e~G~~gR 124 (308)
T PRK00979 49 FDKEKAEALINRQEELSDKTGNPALLDVVGESPEAMEKYIDFVSEITD--LPFLIDST--SPEARIAAAKYATELGLADR 124 (308)
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHhcCC--CCEEEeCC--CHHHHHHHHHHhhhcCCCCc
Confidence 3678999999999999999999999999975433 3344444322 33566654 3444444433 2
Q ss_pred CcEEeecccccccchHHHHHHHHhCCCC-cEEEecCC
Q 025333 115 GAYFSFSGFLMSMKAQKAKKMLKVVPSE-RILLETDA 150 (254)
Q Consensus 115 G~y~s~~~~~~~~~~~~~~~~l~~ip~d-riLlETD~ 150 (254)
-+|=|+++.. .. +.-+++++.+.. -|+|=-|-
T Consensus 125 ~IiNSIn~e~---~~-eel~llk~yg~aavIvLa~d~ 157 (308)
T PRK00979 125 AIYNSINPSI---EE-EEIEALKESDIKAAIVLAFDP 157 (308)
T ss_pred eEEEeccCCC---CH-HHHHHHHHhCCceEEEEEcCC
Confidence 3677888642 12 335788888755 55554444
No 215
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=45.40 E-value=2.4e+02 Score=25.64 Aligned_cols=120 Identities=15% Similarity=0.094 Sum_probs=66.6
Q ss_pred CceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHh--cCCceEEecc-chH----------HHHHHHHHhcCCCCCcE
Q 025333 30 PAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKE--LKRPASIHCV-RAF----------GDLLEIMKSVGPFPDGV 96 (254)
Q Consensus 30 ~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~--~~lPvilH~~-~a~----------~~~l~il~~~~~~~~~~ 96 (254)
..+.|=|-.|-...... ..+.....+...++...+ .+.++.+|+. +.. ..+++.+-+.+. ..+
T Consensus 170 ~~iQiDEP~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~v~lHiC~G~~~~~~~~~~~y~~i~~~l~~~~v--d~~ 245 (332)
T cd03311 170 RYIQIDEPALAEGLPLE--PDDLAADYLKWANEALADRPDDTQIHTHICYGNFRSTWAAEGGYEPIAEYIFELDV--DVF 245 (332)
T ss_pred CEEEeecchhhccCCcc--cHHHHHHHHHHHHHHHHhCCCCCEEEEEEECCCCcccccccCcHHHHHHHHHhCCC--CEE
Confidence 45667676655442111 223455666666665544 3678899987 444 677887766642 223
Q ss_pred EEEeC---CCCHHHHHHHHHCCcEEeeccccc---c-cch----HHHHHHHHhCCCCcEEEecCCCCCC
Q 025333 97 IIHSY---LGSAEMVPELSKLGAYFSFSGFLM---S-MKA----QKAKKMLKVVPSERILLETDAPDAL 154 (254)
Q Consensus 97 IiH~f---sg~~e~~~~~l~~G~y~s~~~~~~---~-~~~----~~~~~~l~~ip~driLlETD~P~~~ 154 (254)
.+..- .++.+.++.+.. |-.+.++-.-+ . .+. .+++++++.++.+++.+-|||.+..
T Consensus 246 ~le~~~~~~~~~~~l~~~~~-~k~l~~GvVd~~~~~~e~~e~v~~ri~~~~~~~~~~~l~lsp~CGl~~ 313 (332)
T cd03311 246 FLEYDNSRAGGLEPLKELPY-DKKVGLGVVDVKSPEVESPEEVKDRIEEAAKYVPLEQLWVSPDCGFAT 313 (332)
T ss_pred EEEEcCCCCcchHHHHhCCC-CCEEEeeeecCCCCCCCCHHHHHHHHHHHHhhCCHHHEEECCCCCCCc
Confidence 33222 235566655443 43343332111 1 112 3355677778999999999998753
No 216
>PRK13985 ureB urease subunit beta; Provisional
Probab=45.16 E-value=52 Score=32.98 Aligned_cols=48 Identities=21% Similarity=0.236 Sum_probs=33.0
Q ss_pred HHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccc
Q 025333 19 FSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVR 77 (254)
Q Consensus 19 l~~l~~ll~~~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~ 77 (254)
++.|.++++. .+++++ ++.|+.. --..+.+.|+.|.+++.||.+||..
T Consensus 203 l~eL~el~~a-GA~GfK-~~ed~g~---------t~~~I~~aL~vA~~~dv~V~iHtdt 250 (568)
T PRK13985 203 DASLADQIEA-GAIGFK-IHEDWGT---------TPSAINHALDVADKYDVQVAIHTDT 250 (568)
T ss_pred HHHHHHHHHc-CCEEEE-ECCccCC---------CHHHHHHHHHHHHHcCCEEEEeCCC
Confidence 5566666543 345555 4445421 1257888889999999999999996
No 217
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=45.06 E-value=1.5e+02 Score=27.11 Aligned_cols=94 Identities=13% Similarity=0.252 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHH-hcCCceEEeccch-------HHHHHHHHHhcCCCCCcEEEEeC------C--CCHHHHHHHHHC-C
Q 025333 53 QVGVFRQQLELAK-ELKRPASIHCVRA-------FGDLLEIMKSVGPFPDGVIIHSY------L--GSAEMVPELSKL-G 115 (254)
Q Consensus 53 Q~~vf~~ql~lA~-~~~lPvilH~~~a-------~~~~l~il~~~~~~~~~~IiH~f------s--g~~e~~~~~l~~-G 115 (254)
.-+.....++... ..++||++=+|-. ..++++++.+.|. ..+.+|+- + .+++.+.++.+. .
T Consensus 106 ~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~--~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ 183 (309)
T PF01207_consen 106 DPDLLAEIVKAVRKAVPIPVSVKIRLGWDDSPEETIEFARILEDAGV--SAITVHGRTRKQRYKGPADWEAIAEIKEALP 183 (309)
T ss_dssp -HHHHHHHHHHHHHH-SSEEEEEEESECT--CHHHHHHHHHHHHTT----EEEEECS-TTCCCTS---HHHHHHCHHC-T
T ss_pred ChHHhhHHHHhhhcccccceEEecccccccchhHHHHHHHHhhhccc--ceEEEecCchhhcCCcccchHHHHHHhhccc
Confidence 3355666666655 4789999999852 3456677777774 44678973 3 246666666653 7
Q ss_pred cEEeecccccccchHHHHHHHHhCCCCcEEEecCC
Q 025333 116 AYFSFSGFLMSMKAQKAKKMLKVVPSERILLETDA 150 (254)
Q Consensus 116 ~y~s~~~~~~~~~~~~~~~~l~~ip~driLlETD~ 150 (254)
+-+-.||.+. +.+++.++++..+.|.+|+..-+
T Consensus 184 ipvi~NGdI~--s~~d~~~~~~~tg~dgvMigRga 216 (309)
T PF01207_consen 184 IPVIANGDIF--SPEDAERMLEQTGADGVMIGRGA 216 (309)
T ss_dssp SEEEEESS----SHHHHHHHCCCH-SSEEEESHHH
T ss_pred ceeEEcCccC--CHHHHHHHHHhcCCcEEEEchhh
Confidence 7777788875 45778888888899999998755
No 218
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=44.95 E-value=27 Score=27.77 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHhcCCceEEeccch
Q 025333 51 MDQVGVFRQQLELAKELKRPASIHCVRA 78 (254)
Q Consensus 51 ~~Q~~vf~~ql~lA~~~~lPvilH~~~a 78 (254)
+.+...|.++++ ....||.+||+..
T Consensus 72 ~~~v~~f~~~~~---~~~~pvL~HC~sG 96 (135)
T TIGR01244 72 PDDVETFRAAIG---AAEGPVLAYCRSG 96 (135)
T ss_pred HHHHHHHHHHHH---hCCCCEEEEcCCC
Confidence 345555555554 3456666666643
No 219
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=44.69 E-value=15 Score=28.52 Aligned_cols=46 Identities=17% Similarity=0.196 Sum_probs=21.9
Q ss_pred HHHHhcCCceEEeccc--------hHHHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHH
Q 025333 62 ELAKELKRPASIHCVR--------AFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPEL 111 (254)
Q Consensus 62 ~lA~~~~lPvilH~~~--------a~~~~l~il~~~~~~~~~~IiH~fsg~~e~~~~~ 111 (254)
+.|+++|+-. +|.+= ....+.+++.+. +.++.+||-||....+-+.
T Consensus 51 ~~a~~~Gl~y-~~iPv~~~~~~~~~v~~f~~~l~~~---~~Pvl~hC~sG~Ra~~l~~ 104 (110)
T PF04273_consen 51 AAAEALGLQY-VHIPVDGGAITEEDVEAFADALESL---PKPVLAHCRSGTRASALWA 104 (110)
T ss_dssp HHHHHCT-EE-EE----TTT--HHHHHHHHHHHHTT---TTSEEEE-SCSHHHHHHHH
T ss_pred HHHHHcCCeE-EEeecCCCCCCHHHHHHHHHHHHhC---CCCEEEECCCChhHHHHHH
Confidence 5566777664 44442 123344555543 2346778888765544433
No 220
>PRK02382 dihydroorotase; Provisional
Probab=44.48 E-value=28 Score=33.21 Aligned_cols=55 Identities=24% Similarity=0.353 Sum_probs=34.9
Q ss_pred HHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccch
Q 025333 19 FSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRA 78 (254)
Q Consensus 19 l~~l~~ll~~~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a 78 (254)
++.+.++++. .+..+|++=..+..... .. -...+.+.++.|+++|+||++|+.+.
T Consensus 130 ~~~l~~l~~~-gv~~~gkv~~~~~~~~~--~~--~~~~l~~~~~~a~~~g~~v~~H~e~~ 184 (443)
T PRK02382 130 WDPLESLWER-GVFALGEIFMADSTGGM--GI--DEELFEEALAEAARLGVLATVHAEDE 184 (443)
T ss_pred hhhHHHHHhc-CccceeEEEEEecCCCc--cc--CHHHHHHHHHHHHhcCCeEEEecCCH
Confidence 4455555544 56667666553321111 11 12567888899999999999999974
No 221
>COG0044 PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]
Probab=44.41 E-value=74 Score=30.70 Aligned_cols=27 Identities=26% Similarity=0.234 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHhcCCceEEeccch
Q 025333 52 DQVGVFRQQLELAKELKRPASIHCVRA 78 (254)
Q Consensus 52 ~Q~~vf~~ql~lA~~~~lPvilH~~~a 78 (254)
.-..++++.++.|.++|.++++||.+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~H~Ed~ 181 (430)
T COG0044 155 LDDDVLEEALEYAAELGALILVHAEDD 181 (430)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEecCCh
Confidence 456889999999999999999999985
No 222
>TIGR02967 guan_deamin guanine deaminase. This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model.
Probab=44.32 E-value=96 Score=28.89 Aligned_cols=59 Identities=12% Similarity=0.140 Sum_probs=39.5
Q ss_pred HHHHHhcCC----ceEEeccchHHHHHHHHHhcCCCCCcEEEEeCC------CCHHHHHHHHHCCcEEeeccc
Q 025333 61 LELAKELKR----PASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYL------GSAEMVPELSKLGAYFSFSGF 123 (254)
Q Consensus 61 l~lA~~~~l----PvilH~~~a~~~~l~il~~~~~~~~~~IiH~fs------g~~e~~~~~l~~G~y~s~~~~ 123 (254)
++...++|+ .++.||....++-++++++.+. .+.||-+ .....++.+++.|+-++++..
T Consensus 228 ~~~l~~~g~lg~~~~~~H~~~~~~~~~~~l~~~g~----~v~~~P~~~~~~~~g~~~~~~~~~~Gv~v~lGtD 296 (401)
T TIGR02967 228 LDVYDHYGLLGRRSVFAHCIHLSDEECQRLAETGA----AIAHCPTSNLFLGSGLFNLKKALEHGVRVGLGTD 296 (401)
T ss_pred HHHHHHCCCCCCCeEEEecccCCHHHHHHHHHcCC----eEEEChHHHHHhccCCCCHHHHHHCCCeEEEecC
Confidence 344445554 3579999988888999988763 3667732 223345677888988888753
No 223
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=44.00 E-value=50 Score=28.35 Aligned_cols=23 Identities=9% Similarity=-0.034 Sum_probs=12.8
Q ss_pred CCceEEeccch--HHHHHHHHHhcC
Q 025333 68 KRPASIHCVRA--FGDLLEIMKSVG 90 (254)
Q Consensus 68 ~lPvilH~~~a--~~~~l~il~~~~ 90 (254)
|-.+++-.... .+++++++++++
T Consensus 92 g~~~ind~~~~~~~~~~~~l~a~~~ 116 (210)
T PF00809_consen 92 GADIINDISGFEDDPEMLPLAAEYG 116 (210)
T ss_dssp TSSEEEETTTTSSSTTHHHHHHHHT
T ss_pred CcceEEecccccccchhhhhhhcCC
Confidence 55555555542 455666666654
No 224
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=43.98 E-value=1.2e+02 Score=26.55 Aligned_cols=48 Identities=8% Similarity=0.015 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHhcCCceEEeccc-----hHHHHHHHHHhcCCCCCcEEE
Q 025333 51 MDQVGVFRQQLELAKELKRPASIHCVR-----AFGDLLEIMKSVGPFPDGVII 98 (254)
Q Consensus 51 ~~Q~~vf~~ql~lA~~~~lPvilH~~~-----a~~~~l~il~~~~~~~~~~Ii 98 (254)
+.-.+.|+..+++|+++|+.+.+|... ...+++++++..+....++++
T Consensus 134 ~~~~~~l~~l~~~A~~~GV~i~iE~~~~~~~~~~~~~~~ll~~v~~~~lgl~~ 186 (283)
T PRK13209 134 RRFIDGLKESVELASRASVTLAFEIMDTPFMNSISKALGYAHYLNSPWFQLYP 186 (283)
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEeecCCcccCCHHHHHHHHHHhCCCccceEe
Confidence 344667788999999999999998753 456788899887643344433
No 225
>COG1816 Add Adenosine deaminase [Nucleotide transport and metabolism]
Probab=43.89 E-value=2.8e+02 Score=26.05 Aligned_cols=125 Identities=18% Similarity=0.162 Sum_probs=69.2
Q ss_pred hHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccc--hHHHHHHHHHhcCCCCC
Q 025333 17 NWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVR--AFGDLLEIMKSVGPFPD 94 (254)
Q Consensus 17 ~~l~~l~~ll~~~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~--a~~~~l~il~~~~~~~~ 94 (254)
+..++..++....+-..++.+||+-...+.+ -..|....++|++.|+-+.+||.. ..+-+.+.+.-.+..
T Consensus 153 e~~~~~~~~a~~~~~~~~~~~~l~~~e~~~p------~~~f~~~f~~~r~~gl~lt~HaGE~~~~~~i~~al~~~~~~-- 224 (345)
T COG1816 153 ESADEELELALRYRDKLVTGVGLAGSESGYP------PELFVSLFKLARDNGLKLTIHAGEAGGPESIRDALDLLGAE-- 224 (345)
T ss_pred HHHHHHHHHHhhcccccCccCCCCcccccCC------HHHHHHHHHHHHHcCceEEEeccccCCcHHHHHHHHHhchh--
Confidence 3334443333332222344677776543322 267888889999999999999994 455566655544321
Q ss_pred cEEEEeCC--CCHHHHHHHHHCCcEEeeccccc-------ccchHHHHHHHHhCCCCcEEEecCCCC
Q 025333 95 GVIIHSYL--GSAEMVPELSKLGAYFSFSGFLM-------SMKAQKAKKMLKVVPSERILLETDAPD 152 (254)
Q Consensus 95 ~~IiH~fs--g~~e~~~~~l~~G~y~s~~~~~~-------~~~~~~~~~~l~~ip~driLlETD~P~ 152 (254)
| |=|+-. -+.+.+..+.+.++-+-+-+.-. ....--++++++.- =++=+.||.|-
T Consensus 225 r-I~HGi~~~~d~~L~~~l~~~qI~levCP~SNi~~~~v~~~~~hPf~~~~d~G--v~VsLnTDdp~ 288 (345)
T COG1816 225 R-IGHGIRAIEDPELLYRLAERQIPLEVCPLSNIQLGVVPSLAKHPFKKLFDAG--VKVSLNTDDPL 288 (345)
T ss_pred h-hccccccccCHHHHHHHHHhCCeeEECCcchhhcccccchhhCcHHHHHHcC--CceEEcCCChh
Confidence 1 335322 34567777777777665544200 00011133444432 36778888874
No 226
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=43.22 E-value=1.5e+02 Score=25.58 Aligned_cols=58 Identities=19% Similarity=0.162 Sum_probs=34.5
Q ss_pred HHHHHHHhhcCCceEEEeecCCC-CCCCCCCCHHHHHHHHHHHHHHHHhcCCc-eEEecc
Q 025333 19 FSTLKEFFEITPAAAVGEIGLDK-GSKGREIDFMDQVGVFRQQLELAKELKRP-ASIHCV 76 (254)
Q Consensus 19 l~~l~~ll~~~~~~aIGEiGLD~-~~~~~~~~~~~Q~~vf~~ql~lA~~~~lP-vilH~~ 76 (254)
.+.+.+.++...+...+-..... .........+.-.+.+++.+++|+++|.+ |++|+.
T Consensus 47 ~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg~~~vv~~~g 106 (274)
T COG1082 47 LAELKELLADYGLEITSLAPFSNNLLSPDEEEREEALEELKRAIELAKELGAKVVVVHPG 106 (274)
T ss_pred HHHHHHHHHHcCcEEEeecccCCCcCCCchhhHHHHHHHHHHHHHHHHHcCCCeEEeecc
Confidence 77788888776554433233222 11111112234577788899999999976 666775
No 227
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=43.16 E-value=2e+02 Score=26.20 Aligned_cols=61 Identities=21% Similarity=0.169 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhcCCceEEeccch-------HHHHHHHH----HhcCCCCCcEEEEeC-CCCHHHHHHHHHCCc
Q 025333 55 GVFRQQLELAKELKRPASIHCVRA-------FGDLLEIM----KSVGPFPDGVIIHSY-LGSAEMVPELSKLGA 116 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~a-------~~~~l~il----~~~~~~~~~~IiH~f-sg~~e~~~~~l~~G~ 116 (254)
+..+..++.|++.+.||+|-.-.. .+.+..++ ++... +..+.+|.- ..+.+...++++.||
T Consensus 29 e~~~avi~AAe~~~sPvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~VPV~lHLDHg~~~e~i~~ai~~Gf 101 (285)
T PRK07709 29 EWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNI-TVPVAIHLDHGSSFEKCKEAIDAGF 101 (285)
T ss_pred HHHHHHHHHHHHHCCCEEEEcCcchhhhcCCHHHHHHHHHHHHHHcCC-CCcEEEECCCCCCHHHHHHHHHcCC
Confidence 677889999999999999976542 12222333 33321 123666622 236889999999984
No 228
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=42.75 E-value=2.4e+02 Score=26.23 Aligned_cols=61 Identities=16% Similarity=0.238 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhcCCceEEeccch---------HHHHHH----HHHhcCCCCCcEEEEeC-CCCHHHHHHHHHCCc
Q 025333 55 GVFRQQLELAKELKRPASIHCVRA---------FGDLLE----IMKSVGPFPDGVIIHSY-LGSAEMVPELSKLGA 116 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~a---------~~~~l~----il~~~~~~~~~~IiH~f-sg~~e~~~~~l~~G~ 116 (254)
+..++.++.|++.+.||+|-.-.. ...+.. +.++.+. ...+++|-- ..+.+.+.++++.|+
T Consensus 35 e~~~avi~AAee~~sPvIlq~s~~~~~~~g~~~~~~~~~~~~~~a~~a~~-~VPV~lHLDHg~~~e~i~~ai~~Gf 109 (321)
T PRK07084 35 EQLQAIIQACVETKSPVILQVSKGARKYANATLLRYMAQGAVEYAKELGC-PIPIVLHLDHGDSFELCKDCIDSGF 109 (321)
T ss_pred HHHHHHHHHHHHhCCCEEEEechhHHhhCCchHHHHHHHHHHHHHHHcCC-CCcEEEECCCCCCHHHHHHHHHcCC
Confidence 678899999999999999977532 122222 2333321 123666621 237889999999885
No 229
>COG0620 MetE Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=42.69 E-value=2.2e+02 Score=26.51 Aligned_cols=99 Identities=20% Similarity=0.309 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHh---cCCceEEe-ccchHHHHHHHHHhcCCCCCcEEEEeCCC-CHHHHHHHHH--CCcEEeec---
Q 025333 52 DQVGVFRQQLELAKE---LKRPASIH-CVRAFGDLLEIMKSVGPFPDGVIIHSYLG-SAEMVPELSK--LGAYFSFS--- 121 (254)
Q Consensus 52 ~Q~~vf~~ql~lA~~---~~lPvilH-~~~a~~~~l~il~~~~~~~~~~IiH~fsg-~~e~~~~~l~--~G~y~s~~--- 121 (254)
.-.+.+...+.++.. .+.-+.+| |...+.++.+.+..... .++-+-++. ..+.+..+-. .+..++++
T Consensus 193 ~~l~~~~~~~~~~~~~~~~d~~i~~HiCy~e~~~~~~~i~~ld~---dv~~~e~~~s~~~~~~~~~~~~~~~~Ig~Gv~d 269 (330)
T COG0620 193 DYLEWAVEAINLAAAGVGADTQIHLHICYSEFNDIPDAIEALDA---DVIDIETSRSRMELLEVLEEVKYDKEIGLGVVD 269 (330)
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEEEECCcccchhHHHhhcCC---cEEeeeccccccchhHHHHhccCCCeeecceEe
Confidence 455666666666665 45667778 88877777777776632 233333332 2223333322 22233332
Q ss_pred ---ccccccc--hHHHHHHHHhCCCCcEEEecCCCCC
Q 025333 122 ---GFLMSMK--AQKAKKMLKVVPSERILLETDAPDA 153 (254)
Q Consensus 122 ---~~~~~~~--~~~~~~~l~~ip~driLlETD~P~~ 153 (254)
+.+-... ...++++++.+|.+++.+.+||-..
T Consensus 270 ~~~~~ve~~eei~~~i~k~~~~~~~e~~~vnPDCGl~ 306 (330)
T COG0620 270 IHSPKVESVEEIAARIRKALERVPPERLYVNPDCGLK 306 (330)
T ss_pred cCCCCcCCHHHHHHHHHHHHHhCChheEEEcCCCCcc
Confidence 2221110 1335677889999999999999763
No 230
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=42.58 E-value=2.4e+02 Score=24.93 Aligned_cols=38 Identities=8% Similarity=0.037 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhcCCceEEeccchHHHHHHHHHhcCC
Q 025333 54 VGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGP 91 (254)
Q Consensus 54 ~~vf~~ql~lA~~~~lPvilH~~~a~~~~l~il~~~~~ 91 (254)
.++++...+++++.++.+.+|......+.++.|++.|.
T Consensus 97 ~~~~~~i~~~~~~~~i~~~~~~g~~~~e~l~~Lk~aG~ 134 (296)
T TIGR00433 97 MEYVEAMVQIVEEMGLKTCATLGLLDPEQAKRLKDAGL 134 (296)
T ss_pred HHHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCC
Confidence 67888888888889999999887667889999998864
No 231
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=42.42 E-value=2e+02 Score=23.98 Aligned_cols=116 Identities=17% Similarity=0.095 Sum_probs=59.4
Q ss_pred hHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhc-CCceEEec--cchHHHHHHHHHhcCCCC
Q 025333 17 NWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKEL-KRPASIHC--VRAFGDLLEIMKSVGPFP 93 (254)
Q Consensus 17 ~~l~~l~~ll~~~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~-~lPvilH~--~~a~~~~l~il~~~~~~~ 93 (254)
+....+.+.+ ++.+.+| |+|....... =.++++ ++++.+ +..+.+|. -+.....++.+.+.|.
T Consensus 12 ~~a~~~~~~l-~~~v~~i-ev~~~l~~~~-------g~~~i~---~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Ga-- 77 (206)
T TIGR03128 12 EEALELAEKV-ADYVDII-EIGTPLIKNE-------GIEAVK---EMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGA-- 77 (206)
T ss_pred HHHHHHHHHc-ccCeeEE-EeCCHHHHHh-------CHHHHH---HHHHHCCCCEEEEEEeeccchHHHHHHHHHcCC--
Confidence 3344444455 4556555 9985543210 012222 222232 55666554 4544444666667764
Q ss_pred CcEEEEeCCCC---HHHHHHHHHCCcEEeecc-cccccchHHHHHHHHhCCCCcEEEec
Q 025333 94 DGVIIHSYLGS---AEMVPELSKLGAYFSFSG-FLMSMKAQKAKKMLKVVPSERILLET 148 (254)
Q Consensus 94 ~~~IiH~fsg~---~e~~~~~l~~G~y~s~~~-~~~~~~~~~~~~~l~~ip~driLlET 148 (254)
.-+++|++++. .+..+.+.+.|+-+.+.- .... ..+..+.+. ..+.|-+-+.+
T Consensus 78 d~i~vh~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~t-~~~~~~~~~-~~g~d~v~~~p 134 (206)
T TIGR03128 78 DIVTVLGVADDATIKGAVKAAKKHGKEVQVDLINVKD-KVKRAKELK-ELGADYIGVHT 134 (206)
T ss_pred CEEEEeccCCHHHHHHHHHHHHHcCCEEEEEecCCCC-hHHHHHHHH-HcCCCEEEEcC
Confidence 34677998754 345556667788776531 1110 124444554 44778776643
No 232
>TIGR03314 Se_ssnA putative selenium metabolism protein SsnA. Members of this protein family are found exclusively in genomes that contain putative set of labile selenium-dependent enzyme accessory proteins as well as homologs of a labile selenium-dependent purine hydroxylase. A mutant in this gene in Escherichia coli had improved stationary phase viability. The function is unknown.
Probab=42.34 E-value=91 Score=29.76 Aligned_cols=51 Identities=14% Similarity=0.253 Sum_probs=37.0
Q ss_pred CceEEeccchHHHHHHHHHhcCCCCCcEEEEeCCCC------HHHHHHHHHCCcEEeeccc
Q 025333 69 RPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGS------AEMVPELSKLGAYFSFSGF 123 (254)
Q Consensus 69 lPvilH~~~a~~~~l~il~~~~~~~~~~IiH~fsg~------~e~~~~~l~~G~y~s~~~~ 123 (254)
..+..||....++-+++|.+.+. .|.||-..+ ..-+.++++.|+-++++..
T Consensus 255 ~~~~~H~~~~~~~d~~~la~~g~----~v~~cP~sn~~l~~G~~p~~~~~~~Gv~v~LGtD 311 (441)
T TIGR03314 255 KTLAAHCIYLSDREIELLNETDT----FVVHNPESNMGNAVGYNPVLRMFKNGILLGLGTD 311 (441)
T ss_pred CeEEEEEecCCHHHHHHHHHcCC----cEEECHHHHhhhccCCCCHHHHHHCCCEEEEcCC
Confidence 35679999988888899988763 477876332 2235678888988888753
No 233
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=42.32 E-value=1.7e+02 Score=23.17 Aligned_cols=72 Identities=17% Similarity=0.189 Sum_probs=47.0
Q ss_pred hhHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccch-HHHHHHHHHhcC
Q 025333 16 PNWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRA-FGDLLEIMKSVG 90 (254)
Q Consensus 16 ~~~l~~l~~ll~~~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a-~~~~l~il~~~~ 90 (254)
...++.|.+++++.++..| =|||+....+.......+.+-|..+|+ +.+++||.++-.+- ....-+.+.+.+
T Consensus 34 ~~~~~~l~~~i~~~~~~~i-VvGlP~~~dG~~~~~a~~v~~f~~~L~--~~~~~~v~~~DEr~TT~~A~~~l~~~g 106 (130)
T TIGR00250 34 EPDWSRIEELLKEWTPDKI-VVGLPLNMDGTEGPLTERAQKFANRLE--GRFGVPVVLWDERLSTVEAESGLFARG 106 (130)
T ss_pred cHHHHHHHHHHHHcCCCEE-EEeccCCCCcCcCHHHHHHHHHHHHHH--HHhCCCEEEEcCCcCHHHHHHHHHHcC
Confidence 3557888888877654333 289999876655555555666666654 45799998888773 444445565544
No 234
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=42.30 E-value=1.8e+02 Score=24.51 Aligned_cols=67 Identities=21% Similarity=0.258 Sum_probs=38.2
Q ss_pred chHHHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHH---CCcE--EeecccccccchHHHHHHHHhCCCCcEEEecCCC
Q 025333 77 RAFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSK---LGAY--FSFSGFLMSMKAQKAKKMLKVVPSERILLETDAP 151 (254)
Q Consensus 77 ~a~~~~l~il~~~~~~~~~~IiH~fsg~~e~~~~~l~---~G~y--~s~~~~~~~~~~~~~~~~l~~ip~driLlETD~P 151 (254)
+..+++.+++.+.+. ..+.+|.-. +.+.++.+.+ ..++ ++++.. ....... ....+.|.+|++|..+
T Consensus 60 ~~~~~i~~ia~~~~~--d~Vqlhg~e-~~~~~~~l~~~~~~~~i~~i~~~~~----~~~~~~~-~~~~~aD~il~dt~~~ 131 (203)
T cd00405 60 EDLEEILEIAEELGL--DVVQLHGDE-SPEYCAQLRARLGLPVIKAIRVKDE----EDLEKAA-AYAGEVDAILLDSKSG 131 (203)
T ss_pred CCHHHHHHHHHhcCC--CEEEECCCC-CHHHHHHHHhhcCCcEEEEEecCCh----hhHHHhh-hccccCCEEEEcCCCC
Confidence 346788888888764 345566543 4566666654 3677 544431 1111111 1224679999988654
No 235
>COG1456 CdhE CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=41.90 E-value=54 Score=31.15 Aligned_cols=50 Identities=20% Similarity=0.379 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHhcCCceEEeccchHHHHHHHHHh---cCCCCCcEEE--EeCCC
Q 025333 52 DQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKS---VGPFPDGVII--HSYLG 103 (254)
Q Consensus 52 ~Q~~vf~~ql~lA~~~~lPvilH~~~a~~~~l~il~~---~~~~~~~~Ii--H~fsg 103 (254)
.-+.-+...+++|.++++||++|..+..+++-.+..+ .|. .-+++ |-|.|
T Consensus 189 Ate~n~~e~~klav~y~vplvl~a~~dl~~lk~la~~~~~~Gi--~divLdPgT~p~ 243 (467)
T COG1456 189 ATEDNWKEFAKLAVEYKVPLVLSAFNDLDDLKNLAVTYAQAGI--KDIVLDPGTYPG 243 (467)
T ss_pred cccccHHHHHHHHhhcCCcEEEeccCCHHHHHHHHHHHHHcCC--ceEEecCCcccC
Confidence 3445566788999999999999998877777666554 343 22455 66655
No 236
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=41.88 E-value=1.8e+02 Score=23.29 Aligned_cols=71 Identities=17% Similarity=0.195 Sum_probs=45.3
Q ss_pred hHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccch-HHHHHHHHHhcC
Q 025333 17 NWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRA-FGDLLEIMKSVG 90 (254)
Q Consensus 17 ~~l~~l~~ll~~~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a-~~~~l~il~~~~ 90 (254)
..++.|.+++.+.++..| =|||+....+.........+-|...|+ +.+++||.+.-.+- ..+.-+++.+.+
T Consensus 41 ~~~~~l~~~i~~~~i~~i-VvGlP~~~~G~~~~~~~~v~~f~~~L~--~~~~~~v~~~DEr~TT~~A~~~l~~~~ 112 (138)
T PRK00109 41 PDWDRLEKLIKEWQPDGL-VVGLPLNMDGTEGPRTERARKFANRLE--GRFGLPVVLVDERLSTVEAERALADVG 112 (138)
T ss_pred hHHHHHHHHHHHhCCCEE-EEeccCCCCCCcCHHHHHHHHHHHHHH--HHhCCCEEEEcCCcCHHHHHHHHHHcC
Confidence 357888888877654333 289998876554444455555555554 45689999888873 445556665554
No 237
>PRK14001 potassium-transporting ATPase subunit C; Provisional
Probab=41.29 E-value=25 Score=30.23 Aligned_cols=36 Identities=11% Similarity=0.043 Sum_probs=29.3
Q ss_pred cccHHHHHHHHHhccCCCHHHHHHHHHHHHHH-hcCC
Q 025333 210 PANIHNVLDYVASLLDMTKEELAELSYRNAIR-LFSY 245 (254)
Q Consensus 210 P~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~-~f~~ 245 (254)
|..-..=+..||+.+|+++++|.+.+.+|... .|++
T Consensus 135 ~~aA~~Qv~RVA~argl~~~~v~~LV~~~t~~~~lG~ 171 (189)
T PRK14001 135 VVNAKLQAPRVAQARNISIRQVERLIEDHTDARGLGF 171 (189)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHhcCCCcCC
Confidence 55555566789999999999999999999983 4555
No 238
>PRK14002 potassium-transporting ATPase subunit C; Provisional
Probab=41.27 E-value=25 Score=30.07 Aligned_cols=36 Identities=19% Similarity=0.224 Sum_probs=29.2
Q ss_pred cccHHHHHHHHHhccCCCHHHHHHHHHHHHH-HhcCC
Q 025333 210 PANIHNVLDYVASLLDMTKEELAELSYRNAI-RLFSY 245 (254)
Q Consensus 210 P~~l~~v~~~lA~i~~~~~eev~~~~~~N~~-~~f~~ 245 (254)
|.....=+..||+.+|+++++|.+.+.+|.. +.|++
T Consensus 131 p~aA~~Qv~RVA~argl~~~~v~~LV~~~t~~~~lG~ 167 (186)
T PRK14002 131 PQAAYVQVKRVAKARGMSEEKVKQLVDQHVEKPLLGM 167 (186)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHhcCCCCCc
Confidence 5555566678999999999999999999998 44554
No 239
>PRK13207 ureC urease subunit alpha; Reviewed
Probab=40.98 E-value=59 Score=32.61 Aligned_cols=63 Identities=17% Similarity=0.267 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhcCCceEEeccchHH-HHHH-HHHhcCCCCCcEEEEeCC------C-CHHHHHHHHHCCcEEeec
Q 025333 55 GVFRQQLELAKELKRPASIHCVRAFG-DLLE-IMKSVGPFPDGVIIHSYL------G-SAEMVPELSKLGAYFSFS 121 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~a~~-~~l~-il~~~~~~~~~~IiH~fs------g-~~e~~~~~l~~G~y~s~~ 121 (254)
..+.+.++.|.++|+||.+||+..-+ -+.+ .++... ...+|.|- | .++.++.+...|++.|-+
T Consensus 228 ~~l~~aL~~A~~~gv~V~iHa~tlne~G~~e~t~~a~~----g~~iH~~H~egaggghapdii~~~~~~~v~p~st 299 (568)
T PRK13207 228 AAIDNCLSVADEYDVQVAIHTDTLNESGFVEDTIAAFK----GRTIHTFHTEGAGGGHAPDIIKVAGEPNVLPSST 299 (568)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCcccchHHHHHHHhcC----CCEEEEEeecCCCcCCchHHHHHhhcCCCccCCC
Confidence 68888999999999999999985211 1122 233221 23555442 1 255555655678887744
No 240
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=40.31 E-value=1.2e+02 Score=28.66 Aligned_cols=60 Identities=18% Similarity=0.187 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhcCCceEEeccchH------HHHHHHH----HhcCCCCCcEEEEeC-CCCHHHHHHHHHCCc
Q 025333 55 GVFRQQLELAKELKRPASIHCVRAF------GDLLEIM----KSVGPFPDGVIIHSY-LGSAEMVPELSKLGA 116 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~a~------~~~l~il----~~~~~~~~~~IiH~f-sg~~e~~~~~l~~G~ 116 (254)
+.++..++.|.+.+.||+|-.-... +.+..++ ++... ..+.+|-- ..+.+.+.++++.|+
T Consensus 27 e~~~aii~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~~~~~ae~~~~--VPValHLDHg~~~e~i~~Ai~~GF 97 (347)
T TIGR01521 27 EQMRAIMEAADKTDSPVILQASRGARSYAGAPFLRHLILAAIEEYPH--IPVVMHQDHGNSPATCQRAIQLGF 97 (347)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhCCC--CcEEEECCCCCCHHHHHHHHHcCC
Confidence 6788999999999999999775421 2222222 22311 23566511 136889999999874
No 241
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=40.17 E-value=97 Score=28.89 Aligned_cols=68 Identities=18% Similarity=0.246 Sum_probs=34.5
Q ss_pred HHhcCCCCCcEEEEeCCCC-HHHHH----HHHHCCc---EEeecccccccc-hH----HHHHHHHhCCCCcEEEecCCCC
Q 025333 86 MKSVGPFPDGVIIHSYLGS-AEMVP----ELSKLGA---YFSFSGFLMSMK-AQ----KAKKMLKVVPSERILLETDAPD 152 (254)
Q Consensus 86 l~~~~~~~~~~IiH~fsg~-~e~~~----~~l~~G~---y~s~~~~~~~~~-~~----~~~~~l~~ip~driLlETD~P~ 152 (254)
+++..+ ..++++|..++. .+..+ .+.+.|. +|++|-++.+-. .. .+..+.++++-+=+++||.+||
T Consensus 163 Vr~~~p-~~kV~lH~~~~~~~~~~~~~f~~l~~~g~d~DviGlSyYP~w~~~l~~l~~~l~~l~~ry~K~V~V~Et~yp~ 241 (332)
T PF07745_consen 163 VREVDP-NIKVMLHLANGGDNDLYRWFFDNLKAAGVDFDVIGLSYYPFWHGTLEDLKNNLNDLASRYGKPVMVVETGYPW 241 (332)
T ss_dssp HHTHSS-TSEEEEEES-TTSHHHHHHHHHHHHHTTGG-SEEEEEE-STTST-HHHHHHHHHHHHHHHT-EEEEEEE---S
T ss_pred HHhcCC-CCcEEEEECCCCchHHHHHHHHHHHhcCCCcceEEEecCCCCcchHHHHHHHHHHHHHHhCCeeEEEeccccc
Confidence 334433 356888877654 33333 3344565 445554332211 12 2445666788899999999999
Q ss_pred CC
Q 025333 153 AL 154 (254)
Q Consensus 153 ~~ 154 (254)
..
T Consensus 242 t~ 243 (332)
T PF07745_consen 242 TL 243 (332)
T ss_dssp BS
T ss_pred cc
Confidence 64
No 242
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=40.14 E-value=1.7e+02 Score=25.49 Aligned_cols=48 Identities=15% Similarity=0.087 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhcCCceEEecc----------chHHHHHHHHHhcCCCCCcEEE---EeC
Q 025333 54 VGVFRQQLELAKELKRPASIHCV----------RAFGDLLEIMKSVGPFPDGVII---HSY 101 (254)
Q Consensus 54 ~~vf~~ql~lA~~~~lPvilH~~----------~a~~~~l~il~~~~~~~~~~Ii---H~f 101 (254)
.+.+.+..++|++.|+.+.+|.. ...+++++++++.+....++++ |.+
T Consensus 123 ~~~l~~l~~~a~~~Gv~l~lE~~n~~~~~~~~~~~~~~~~~ll~~v~~~~v~l~~D~~h~~ 183 (258)
T PRK09997 123 VENLRYAANMLMKEDILLLIEPINHFDIPGFHLTGTRQALKLIDDVGCCNLKIQYDIYHMQ 183 (258)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCCcCCCCCccCCHHHHHHHHHHhCCCCEEEEeEHHHhh
Confidence 45567778888999999999852 2356788899887643344544 655
No 243
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=40.12 E-value=77 Score=29.79 Aligned_cols=56 Identities=20% Similarity=0.223 Sum_probs=32.5
Q ss_pred HHHHHHHHHhc-CCceEEeccchH-HHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCc
Q 025333 57 FRQQLELAKEL-KRPASIHCVRAF-GDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGA 116 (254)
Q Consensus 57 f~~ql~lA~~~-~lPvilH~~~a~-~~~l~il~~~~~~~~~~IiH~fsg~~e~~~~~l~~G~ 116 (254)
|.+.=++++.. +.|+++|-.... .++++.+..+|.. +=-.+.-+.+.++++++.|+
T Consensus 214 ~drl~eI~~~v~~vPLVLHGgSGvp~~~~~~~~~~g~~----~~~~~g~~~e~~~kai~~GI 271 (347)
T PRK13399 214 IDRIEEIHARLPNTHLVMHGSSSVPQELQEIINAYGGK----MKETYGVPVEEIQRGIKHGV 271 (347)
T ss_pred HHHHHHHHhhcCCCCEEEeCCCCCCHHHHHHHHHhcCC----ccccCCCCHHHHHHHHHCCC
Confidence 34444555556 577777776653 3666666666531 11334445677888888773
No 244
>PRK13995 potassium-transporting ATPase subunit C; Provisional
Probab=40.03 E-value=27 Score=30.30 Aligned_cols=36 Identities=14% Similarity=0.229 Sum_probs=29.7
Q ss_pred cccHHHHHHHHHhccCCCHHHHHHHHHHHHH-HhcCC
Q 025333 210 PANIHNVLDYVASLLDMTKEELAELSYRNAI-RLFSY 245 (254)
Q Consensus 210 P~~l~~v~~~lA~i~~~~~eev~~~~~~N~~-~~f~~ 245 (254)
|.+...=+..||+.+|+++++|.+.+.+|.. +.|++
T Consensus 145 p~aA~~Qv~RVA~argl~~~~v~~LV~~~t~~~~lG~ 181 (203)
T PRK13995 145 PKSAAIQIPAVSKATGISESKLKKIVKDNTEGKTFGV 181 (203)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHhcCCCcCc
Confidence 5555666678999999999999999999999 45555
No 245
>PRK00369 pyrC dihydroorotase; Provisional
Probab=39.93 E-value=3.3e+02 Score=25.74 Aligned_cols=36 Identities=14% Similarity=0.066 Sum_probs=28.1
Q ss_pred cHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCCCC
Q 025333 212 NIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEGS 248 (254)
Q Consensus 212 ~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~f~~~~~ 248 (254)
.++-++. +..-.+++.+++.+.+..|..++|+++..
T Consensus 285 ~lpll~~-~v~~~~lsl~~~v~~~s~nPA~ilgl~~g 320 (392)
T PRK00369 285 TPPFIYT-LVSKGILSIDRAVELISTNPARILGIPYG 320 (392)
T ss_pred HHHHHHH-HHHcCCCCHHHHHHHHHHHHHHHhCCCCC
Confidence 4555554 33456799999999999999999999653
No 246
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=39.57 E-value=1.3e+02 Score=27.59 Aligned_cols=40 Identities=13% Similarity=0.062 Sum_probs=26.3
Q ss_pred CCceEEEeecCCCCCCC---CCCCHHHHHHHHHHHHHHHHhcC
Q 025333 29 TPAAAVGEIGLDKGSKG---REIDFMDQVGVFRQQLELAKELK 68 (254)
Q Consensus 29 ~~~~aIGEiGLD~~~~~---~~~~~~~Q~~vf~~ql~lA~~~~ 68 (254)
.+.+.|||+|.+-.-.. ..+..+.|+..+++.+---+..|
T Consensus 231 ~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~~G 273 (305)
T COG5309 231 KKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRSCG 273 (305)
T ss_pred CccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhccC
Confidence 36899999998865321 23467889888877655333333
No 247
>PRK00315 potassium-transporting ATPase subunit C; Reviewed
Probab=39.52 E-value=33 Score=29.54 Aligned_cols=37 Identities=24% Similarity=0.295 Sum_probs=29.7
Q ss_pred cccHHHHHHHHHhccCCCHHHHHHHHHHHHH-HhcCCC
Q 025333 210 PANIHNVLDYVASLLDMTKEELAELSYRNAI-RLFSYE 246 (254)
Q Consensus 210 P~~l~~v~~~lA~i~~~~~eev~~~~~~N~~-~~f~~~ 246 (254)
|..-..=+..||+.+|+++++|.+++.+|.. +.|++-
T Consensus 135 ~~aA~~Qv~RVA~argl~~~~v~~LI~~~t~~~~lG~~ 172 (193)
T PRK00315 135 PAAAAYQIPRVAAARQLPVEQVAQLVAAYTQGPLFGFL 172 (193)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHhcCCCcccC
Confidence 4555555678999999999999999999998 556653
No 248
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=39.19 E-value=4e+02 Score=26.92 Aligned_cols=82 Identities=17% Similarity=0.245 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhcCCceEEeccch------HHHHHHHHHhcCCCCCcEEEEeCCCCH--------HHHHHHHHCCcE-Ee
Q 025333 55 GVFRQQLELAKELKRPASIHCVRA------FGDLLEIMKSVGPFPDGVIIHSYLGSA--------EMVPELSKLGAY-FS 119 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~a------~~~~l~il~~~~~~~~~~IiH~fsg~~--------e~~~~~l~~G~y-~s 119 (254)
.+.+..++.|.+.|.-+ +|.-++ ....++..++.|.. ..+.+ ||++++ +.++.+.+.|+. +.
T Consensus 97 dvv~~~v~~a~~~Gid~-~rifd~lnd~~~~~~ai~~ak~~G~~-~~~~i-~yt~~p~~~~~~~~~~a~~l~~~Gad~i~ 173 (593)
T PRK14040 97 DVVERFVERAVKNGMDV-FRVFDAMNDPRNLETALKAVRKVGAH-AQGTL-SYTTSPVHTLQTWVDLAKQLEDMGVDSLC 173 (593)
T ss_pred HHHHHHHHHHHhcCCCE-EEEeeeCCcHHHHHHHHHHHHHcCCe-EEEEE-EEeeCCccCHHHHHHHHHHHHHcCCCEEE
Confidence 46677888888888765 454433 23445666666531 11122 565554 455566666742 22
Q ss_pred ecccccccchHHHHHHHHhC
Q 025333 120 FSGFLMSMKAQKAKKMLKVV 139 (254)
Q Consensus 120 ~~~~~~~~~~~~~~~~l~~i 139 (254)
+.=.........+.++++.+
T Consensus 174 i~Dt~G~l~P~~~~~lv~~l 193 (593)
T PRK14040 174 IKDMAGLLKPYAAYELVSRI 193 (593)
T ss_pred ECCCCCCcCHHHHHHHHHHH
Confidence 22111122455555555554
No 249
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=39.14 E-value=57 Score=30.65 Aligned_cols=61 Identities=20% Similarity=0.235 Sum_probs=37.6
Q ss_pred HHHHHHHHHhc-CCceEEeccchH-HHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCc-EEeec
Q 025333 57 FRQQLELAKEL-KRPASIHCVRAF-GDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGA-YFSFS 121 (254)
Q Consensus 57 f~~ql~lA~~~-~lPvilH~~~a~-~~~l~il~~~~~~~~~~IiH~fsg~~e~~~~~l~~G~-y~s~~ 121 (254)
|.+.=++.+.. +.|++||..... .+.++++..+|.. +=-.+.-+.+.++++++.|+ -+-++
T Consensus 212 ~~rL~eI~~~v~~vPLVLHGgSG~p~~~~~~~~~~~~~----~~~~~g~p~e~i~~ai~~GI~KVNi~ 275 (347)
T TIGR01521 212 IQRIEEIHARLPDTHLVMHGSSSVPQEWLDIINEYGGE----IKETYGVPVEEIVEGIKYGVRKVNID 275 (347)
T ss_pred HHHHHHHHccCCCCCEEEeCCCCCchHhhHHHHhhccc----ccccCCCCHHHHHHHHHCCCeeEEeC
Confidence 33444555566 688888887754 4677777777631 11345556788888888873 34333
No 250
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=39.04 E-value=1.4e+02 Score=28.04 Aligned_cols=62 Identities=18% Similarity=0.196 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhcCCceEEeccchH------HHHHHHHHhcC-CCC-CcEEEEeC-CCCHHHHHHHHHCCc
Q 025333 55 GVFRQQLELAKELKRPASIHCVRAF------GDLLEIMKSVG-PFP-DGVIIHSY-LGSAEMVPELSKLGA 116 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~a~------~~~l~il~~~~-~~~-~~~IiH~f-sg~~e~~~~~l~~G~ 116 (254)
+.++..++.|++.+.||+|-+-... +.+..+++... ..+ ..+.+|-- ..+.+.+.++++.||
T Consensus 29 e~~~avi~AAee~~sPvIiq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValHLDHg~~~e~i~~ai~~Gf 99 (347)
T PRK09196 29 EQVQAIMEAADETDSPVILQASAGARKYAGEPFLRHLILAAVEEYPHIPVVMHQDHGNSPATCQRAIQLGF 99 (347)
T ss_pred HHHHHHHHHHHHhCCCEEEECCccHhhhCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHcCC
Confidence 6788999999999999999875421 12222222211 011 23666611 136888999999884
No 251
>TIGR00694 thiM hydroxyethylthiazole kinase. This model represents the hydoxyethylthiazole kinase, ThiM, of a number of bacteria, and C-terminal domains of bifunctional thiamine biosynthesis proteins of Saccharomyces cerevisiae and Schizosaccharomyces pombe, in which the N-terminal domain corresponds to the bacterial thiamine-phosphate pyrophosphorylase (EC 2.5.1.3), ThiE.
Probab=38.89 E-value=69 Score=28.18 Aligned_cols=79 Identities=19% Similarity=0.166 Sum_probs=50.2
Q ss_pred HHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccch--H----HHHHHHHHhcCC
Q 025333 18 WFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRA--F----GDLLEIMKSVGP 91 (254)
Q Consensus 18 ~l~~l~~ll~~~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a--~----~~~l~il~~~~~ 91 (254)
..+++.+++....+++|| +|+-.. .+.+.....++.++++++||++--+.. . ....+++...
T Consensus 39 ~~~e~~~~~~~~~al~ik-~G~l~~---------~~~~~i~~~~~~~~~~~~pvVlDPV~~~~s~~r~~~~~~Ll~~~-- 106 (249)
T TIGR00694 39 AEEEVAELAKIAGALVIN-IGTLDK---------ESIEAMIAAGKSANELGVPVVLDPVGVGATKFRTETALELLSEG-- 106 (249)
T ss_pred CHHHHHHHHHHcCceEEe-CCCCCH---------HHHHHHHHHHHHHHhcCCCEEEcccccccchhHHHHHHHHHhhc--
Confidence 345666666666778887 887621 456777888888899999999987752 1 1112334321
Q ss_pred CCCcEEEEeCCCCHHHHHHHHH
Q 025333 92 FPDGVIIHSYLGSAEMVPELSK 113 (254)
Q Consensus 92 ~~~~~IiH~fsg~~e~~~~~l~ 113 (254)
... | -+++..+++.+.+
T Consensus 107 -~~~-v---ITpN~~E~~~L~g 123 (249)
T TIGR00694 107 -RFA-A---IRGNAGEIASLAG 123 (249)
T ss_pred -CCc-e---eCCCHHHHHHHhC
Confidence 011 2 3677888888865
No 252
>PRK13999 potassium-transporting ATPase subunit C; Provisional
Probab=38.26 E-value=29 Score=30.06 Aligned_cols=36 Identities=14% Similarity=0.128 Sum_probs=29.2
Q ss_pred cccHHHHHHHHHhccCCCHHHHHHHHHHHHHH-hcCC
Q 025333 210 PANIHNVLDYVASLLDMTKEELAELSYRNAIR-LFSY 245 (254)
Q Consensus 210 P~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~-~f~~ 245 (254)
|.+...=+..||+.+|+++++|.+++.+|... .|++
T Consensus 144 p~aA~~Qv~RVA~argls~~~v~~LV~~~t~~~~lG~ 180 (201)
T PRK13999 144 PEAALFQVPRVAKARGLPEDRLRDLVAAQVEGRTLGL 180 (201)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHhcCCCCCC
Confidence 55555666789999999999999999999983 4454
No 253
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=38.21 E-value=3.5e+02 Score=25.57 Aligned_cols=49 Identities=20% Similarity=0.209 Sum_probs=33.1
Q ss_pred ChhHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEecc
Q 025333 15 TPNWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCV 76 (254)
Q Consensus 15 ~~~~l~~l~~ll~~~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~ 76 (254)
+.+.+..|.+...+++ .|||-+-..- .+..++.++.|.+.+-||+|-.-
T Consensus 11 ~~~~~~~lL~~A~~~~-yAVgAfNv~n------------~e~~~Avi~AAEe~~sPvIlq~s 59 (357)
T TIGR01520 11 TGDDVHKLFQYAKENN-FAIPAINCTS------------SSTINAALEAAADVKSPIIIQFS 59 (357)
T ss_pred CHHHHHHHHHHHHHCC-ceEEEEEeCC------------HHHHHHHHHHHHHhCCCEEEEcC
Confidence 4455555555555444 4777554432 26788899999999999998764
No 254
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=38.13 E-value=87 Score=29.33 Aligned_cols=107 Identities=15% Similarity=0.137 Sum_probs=61.1
Q ss_pred ChhHHHHHHHHhhcCCceEEEeecCCCCCCC----CCCC---HHHHHHHHHHHHHHHHhcCCceEEeccch----HHHHH
Q 025333 15 TPNWFSTLKEFFEITPAAAVGEIGLDKGSKG----REID---FMDQVGVFRQQLELAKELKRPASIHCVRA----FGDLL 83 (254)
Q Consensus 15 ~~~~l~~l~~ll~~~~~~aIGEiGLD~~~~~----~~~~---~~~Q~~vf~~ql~lA~~~~lPvilH~~~a----~~~~l 83 (254)
+.+|-..|.+++++-.++++ -.=.|..... ...+ ...-.-.....++...+.++|++|-+.-+ .++.+
T Consensus 88 p~e~~~~Lke~a~~~Gi~~~-SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~~~kPiIlSTGma~~~ei~~av 166 (347)
T COG2089 88 PLEWHAQLKEYARKRGIIFF-SSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAKKGKPIILSTGMATIEEIEEAV 166 (347)
T ss_pred CHHHHHHHHHHHHHcCeEEE-ecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHhcCCCEEEEcccccHHHHHHHH
Confidence 56777888888876443322 2222221100 0000 00111234567888889999999999964 45678
Q ss_pred HHHHhcCCCCCcEEEEeCCC---CHHHHH-----HHH-HCCcEEeeccc
Q 025333 84 EIMKSVGPFPDGVIIHSYLG---SAEMVP-----ELS-KLGAYFSFSGF 123 (254)
Q Consensus 84 ~il~~~~~~~~~~IiH~fsg---~~e~~~-----~~l-~~G~y~s~~~~ 123 (254)
+++++.+.. .-+++||-|. +.+.+. .+. ..|+-+|+|.-
T Consensus 167 ~~~r~~g~~-~i~LLhC~s~YPap~ed~NL~~i~~l~~~Fn~~vGlSDH 214 (347)
T COG2089 167 AILRENGNP-DIALLHCTSAYPAPFEDVNLKAIPKLAEAFNAIVGLSDH 214 (347)
T ss_pred HHHHhcCCC-CeEEEEecCCCCCCHHHhhHHHHHHHHHHhCCccccccC
Confidence 899998763 3356798764 333322 222 24788888753
No 255
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=38.07 E-value=2.9e+02 Score=25.16 Aligned_cols=59 Identities=14% Similarity=0.072 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhcCCceEEeccch------HHHHH----HHHHhcCCCCCcEEEEeCC-CCHHHHHHHHHCCc
Q 025333 55 GVFRQQLELAKELKRPASIHCVRA------FGDLL----EIMKSVGPFPDGVIIHSYL-GSAEMVPELSKLGA 116 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~a------~~~~l----~il~~~~~~~~~~IiH~fs-g~~e~~~~~l~~G~ 116 (254)
+..+..++.|++.+-||+|-.-.. .+.+. .+.++.+. .+.+|--- .+.+.+.++++.|+
T Consensus 29 e~~~avi~AAe~~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~~v---PV~lHLDH~~~~e~i~~Ai~~Gf 98 (283)
T PRK07998 29 ETTISILNAIERSGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMDV---PVSLHLDHGKTFEDVKQAVRAGF 98 (283)
T ss_pred HHHHHHHHHHHHhCCCEEEECcHhHHhhCCHHHHHHHHHHHHHHCCC---CEEEECcCCCCHHHHHHHHHcCC
Confidence 567888999999999999976442 12222 33344432 35665221 36888999999874
No 256
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=38.06 E-value=63 Score=24.32 Aligned_cols=57 Identities=16% Similarity=0.006 Sum_probs=42.0
Q ss_pred EEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccchHHHHHHHHHhcCC
Q 025333 34 VGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGP 91 (254)
Q Consensus 34 IGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a~~~~l~il~~~~~ 91 (254)
-||++.-|.-. +......-..+...+.+...+.|.|+-.|..+.=+.+.+++++.+.
T Consensus 19 tge~rmgyTlP-eyR~~G~~~~v~~~~~~~L~~~g~P~Y~hv~~~N~~~~r~~~~lg~ 75 (89)
T PF08444_consen 19 TGEMRMGYTLP-EYRGQGLMSQVMYHLAQYLHKLGFPFYGHVDEDNEASQRLSKSLGF 75 (89)
T ss_pred cccccccccCH-hHhcCCHHHHHHHHHHHHHHHCCCCeEeehHhccHHHHHHHHHCCC
Confidence 47777665422 1122335567778888888999999999999988888899988763
No 257
>TIGR03586 PseI pseudaminic acid synthase.
Probab=38.06 E-value=1.5e+02 Score=27.48 Aligned_cols=62 Identities=15% Similarity=0.255 Sum_probs=39.3
Q ss_pred HHHHHHhcCCceEEeccch----HHHHHHHHHhcCCCCCcEEEEeCCC--------CHHHHHHHHH-CCcEEeecc
Q 025333 60 QLELAKELKRPASIHCVRA----FGDLLEIMKSVGPFPDGVIIHSYLG--------SAEMVPELSK-LGAYFSFSG 122 (254)
Q Consensus 60 ql~lA~~~~lPvilH~~~a----~~~~l~il~~~~~~~~~~IiH~fsg--------~~e~~~~~l~-~G~y~s~~~ 122 (254)
.|+...+.|+||+|=+..+ +...++.+.+.|. +.-+++||.++ +...+..+.+ .++-+|++.
T Consensus 126 LL~~va~~gkPvilstG~~t~~Ei~~Av~~i~~~g~-~~i~LlhC~s~YP~~~~~~nL~~i~~lk~~f~~pVG~SD 200 (327)
T TIGR03586 126 LIRYVAKTGKPIIMSTGIATLEEIQEAVEACREAGC-KDLVLLKCTSSYPAPLEDANLRTIPDLAERFNVPVGLSD 200 (327)
T ss_pred HHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHCCC-CcEEEEecCCCCCCCcccCCHHHHHHHHHHhCCCEEeeC
Confidence 4566778899999998874 3445667776664 23356699876 3333444433 467777765
No 258
>PRK13996 potassium-transporting ATPase subunit C; Provisional
Probab=38.04 E-value=30 Score=29.87 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=29.4
Q ss_pred cccHHHHHHHHHhccCCCHHHHHHHHHHHHH-HhcCC
Q 025333 210 PANIHNVLDYVASLLDMTKEELAELSYRNAI-RLFSY 245 (254)
Q Consensus 210 P~~l~~v~~~lA~i~~~~~eev~~~~~~N~~-~~f~~ 245 (254)
|..-..=+..||+.+|+++++|.+.+.+|+. +.|++
T Consensus 141 p~aA~~Qv~RVA~argls~~~v~~LV~~~t~~~~lG~ 177 (197)
T PRK13996 141 VAAAKYQVDRIAKNNNMSVKDVEDIIDKYTSGKLFGV 177 (197)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHhcCCCcCc
Confidence 5555566678999999999999999999998 45555
No 259
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=38.01 E-value=62 Score=19.57 Aligned_cols=31 Identities=26% Similarity=0.356 Sum_probs=26.6
Q ss_pred cccHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 025333 210 PANIHNVLDYVASLLDMTKEELAELSYRNAI 240 (254)
Q Consensus 210 P~~l~~v~~~lA~i~~~~~eev~~~~~~N~~ 240 (254)
|..+...++.+|+-.|+|..++.+..-+++.
T Consensus 7 ~~~~~~~l~~~a~~~g~s~s~~ir~ai~~~l 37 (39)
T PF01402_consen 7 PDELYERLDELAKELGRSRSELIREAIREYL 37 (39)
T ss_dssp EHHHHHHHHHHHHHHTSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5677888999999999999999998877764
No 260
>PRK13998 potassium-transporting ATPase subunit C; Provisional
Probab=37.87 E-value=29 Score=29.74 Aligned_cols=32 Identities=16% Similarity=0.131 Sum_probs=27.0
Q ss_pred cccHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 025333 210 PANIHNVLDYVASLLDMTKEELAELSYRNAIR 241 (254)
Q Consensus 210 P~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~ 241 (254)
|.....=+..||+.+|+++++|.+.+.+|...
T Consensus 133 p~aA~~Qv~RVA~argl~~~~v~~LV~~~t~~ 164 (186)
T PRK13998 133 VENALKQAPRIADARHVSTSRVADLIQHRKQR 164 (186)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHhccc
Confidence 55555666789999999999999999999874
No 261
>PRK03892 ribonuclease P protein component 3; Provisional
Probab=37.87 E-value=1.4e+02 Score=26.16 Aligned_cols=65 Identities=9% Similarity=0.064 Sum_probs=37.5
Q ss_pred ccccccccCChhHHHHH-HHHhhcCCceEEEeecCCCCCCC--CCCCHHHHHHHHHHHHHHHHhcCCceEEecc
Q 025333 6 FIFRFVQERTPNWFSTL-KEFFEITPAAAVGEIGLDKGSKG--REIDFMDQVGVFRQQLELAKELKRPASIHCV 76 (254)
Q Consensus 6 ~HP~~~~~~~~~~l~~l-~~ll~~~~~~aIGEiGLD~~~~~--~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~ 76 (254)
.|||.-.... .++.. .++..++ -||| ++|....- ..-....=++.|+..++|+++|+.|++|=+.
T Consensus 107 ~~P~~~Rkd~--g~dHVLAKlAa~n-~VAI---e~~L~plL~~~G~~Rar~L~~~r~~l~L~rKYd~P~VISS~ 174 (216)
T PRK03892 107 ISPWVGRKDP--GIDHVLARMAAKR-GVAI---GFSLSPLLRANPYERANILRFMMKAWQLVNKYKVPRFITSS 174 (216)
T ss_pred ecccccCcCC--CccHHHHHHHHHc-CeEE---EEecHHHHhhCchhHHHHHHHHHHHHHHHHHcCCCEEEecC
Confidence 4787653211 13333 3334434 4565 45554321 1112345567888999999999999998766
No 262
>PRK08393 N-ethylammeline chlorohydrolase; Provisional
Probab=37.72 E-value=1.1e+02 Score=28.86 Aligned_cols=59 Identities=17% Similarity=0.146 Sum_probs=40.1
Q ss_pred HHHHHhcCCc----eEEeccchHHHHHHHHHhcCCCCCcEEEEeCCC------CHHHHHHHHHCCcEEeeccc
Q 025333 61 LELAKELKRP----ASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLG------SAEMVPELSKLGAYFSFSGF 123 (254)
Q Consensus 61 l~lA~~~~lP----vilH~~~a~~~~l~il~~~~~~~~~~IiH~fsg------~~e~~~~~l~~G~y~s~~~~ 123 (254)
++.+.++|+- ++.||....++-++.+.+.+. .+.||-.. ...-++++++.|+-++++..
T Consensus 228 ~~~l~~~G~l~~~~~~~H~~~l~~~~l~~la~~g~----~v~~~P~sn~~lg~g~~~~~~~~~~Gv~v~lGtD 296 (424)
T PRK08393 228 VVLLDEIGFLNEDVIAAHGVWLSSRDIRILASAGV----TVAHNPASNMKLGSGVMPLRKLLNAGVNVALGTD 296 (424)
T ss_pred HHHHHHcCCCCCCcEEEEeecCCHHHHHHHHhcCC----EEEECHHHHHhhccCCCCHHHHHHCCCcEEEecC
Confidence 4455555533 689999988888899988763 46677522 12345778888988888753
No 263
>PRK06052 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=37.63 E-value=2.1e+02 Score=26.94 Aligned_cols=97 Identities=9% Similarity=0.050 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHh--cCCceEEeccchHHHHH-HHHHhcCCCCCcEEEEeCCCCHHHHHHHHHC-----CcEEeec
Q 025333 50 FMDQVGVFRQQLELAKE--LKRPASIHCVRAFGDLL-EIMKSVGPFPDGVIIHSYLGSAEMVPELSKL-----GAYFSFS 121 (254)
Q Consensus 50 ~~~Q~~vf~~ql~lA~~--~~lPvilH~~~a~~~~l-~il~~~~~~~~~~IiH~fsg~~e~~~~~l~~-----G~y~s~~ 121 (254)
.+.=.+.|......|.. .+.++.+|. .++ ..+.+... ..++-|=|.++.+.+.-+-+. +-+++++
T Consensus 180 ~~~~i~Al~~a~~~a~~~gvdv~i~lH~-----~l~~~~i~~~~~--idvi~~E~A~~~~~L~~l~~~~~e~~dk~ig~G 252 (344)
T PRK06052 180 DDEIISALTVASTYARKQGADVEIHLHS-----PLYYELICETPG--INVIGVESAATPSYLDLIDKKVLEDTDTFLRVG 252 (344)
T ss_pred HHHHHHHHHHHHhhhccCCcceEEEEeh-----HhhHHHHhcCCC--CCEEeeeccCChHHHHHHhhhhhhhcCCceEEe
Confidence 34444555555444443 456677777 344 44544421 335557777777666544332 3555554
Q ss_pred cccc--c-------------------------c---c----hHHHHHHHHhCCCCcEEEecCCCCC
Q 025333 122 GFLM--S-------------------------M---K----AQKAKKMLKVVPSERILLETDAPDA 153 (254)
Q Consensus 122 ~~~~--~-------------------------~---~----~~~~~~~l~~ip~driLlETD~P~~ 153 (254)
-.=+ . . + ...++++++.+|.+++.+..||-.-
T Consensus 253 V~dtd~~~~~~~~~~~~~~n~~~~~~~~~~~~~~VEsveEI~~rI~~ale~i~~e~lwVNPDCGLK 318 (344)
T PRK06052 253 VARTDIFSLIAILNEKYGTNAWKDKEYLQEIVTELETPEVIKKRLEKAYSIFGDRIKYVGPDCGLG 318 (344)
T ss_pred EEEchhhcchhhhhhhcccccccchhhccccCCCCCCHHHHHHHHHHHHHhCChhhEEECCCCCCC
Confidence 3211 0 0 1 1336778889999999999999763
No 264
>PRK13997 potassium-transporting ATPase subunit C; Provisional
Probab=37.61 E-value=36 Score=29.29 Aligned_cols=36 Identities=17% Similarity=0.259 Sum_probs=29.5
Q ss_pred cccHHHHHHHHHhccCCCHHHHHHHHHHHHH-HhcCC
Q 025333 210 PANIHNVLDYVASLLDMTKEELAELSYRNAI-RLFSY 245 (254)
Q Consensus 210 P~~l~~v~~~lA~i~~~~~eev~~~~~~N~~-~~f~~ 245 (254)
|.....=+..||+.+|+++++|.+.+.+|.. +.||+
T Consensus 137 p~aA~~Qv~RVA~argls~~~v~~LV~~~t~~~~lG~ 173 (193)
T PRK13997 137 PKAASVQVERISKLTNIPKETLDQLIKDQTEGAALGL 173 (193)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHccCCCCCc
Confidence 5555556678999999999999999999998 45555
No 265
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=37.52 E-value=2.1e+02 Score=24.60 Aligned_cols=44 Identities=11% Similarity=0.067 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhcCCceEEecc----------chHHHHHHHHHhcCCCCCcEEE
Q 025333 55 GVFRQQLELAKELKRPASIHCV----------RAFGDLLEIMKSVGPFPDGVII 98 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~----------~a~~~~l~il~~~~~~~~~~Ii 98 (254)
+.+++..++|++.|+.+.++.. ...+++++++++.+....++.+
T Consensus 123 ~~l~~l~~~A~~~gi~l~lE~~~~~~~~~~~l~t~~~~~~li~~v~~~~~~i~~ 176 (254)
T TIGR03234 123 ENLRYAADALDRIGLTLLIEPINSFDMPGFFLTTTEQALAVIDDVGRENLKLQY 176 (254)
T ss_pred HHHHHHHHHHHhcCCEEEEEECCcccCCCChhcCHHHHHHHHHHhCCCCEeEee
Confidence 4577888899999999999853 2457888999887644444444
No 266
>PRK08999 hypothetical protein; Provisional
Probab=37.41 E-value=2.3e+02 Score=25.46 Aligned_cols=85 Identities=15% Similarity=0.147 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCceEEeccchHHHHHHHHHhcCCCCCcEEEEeCC--CCHHHHHHHHHCCcEEeeccccc
Q 025333 48 IDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYL--GSAEMVPELSKLGAYFSFSGFLM 125 (254)
Q Consensus 48 ~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a~~~~l~il~~~~~~~~~~IiH~fs--g~~e~~~~~l~~G~y~s~~~~~~ 125 (254)
.+.+...+..++..+++++++.+++||.+- ++..+.+. .+ +|.-. .+...++. +..+..+|+|..
T Consensus 168 ~~~~~~~~~~~~l~~~~~~~~~~liind~~------~la~~~~~--~G--vHl~~~d~~~~~~r~-~~~~~~ig~S~h-- 234 (312)
T PRK08999 168 LPPAAYRALARAALGLCRRAGAQLLLNGDP------ELAEDLGA--DG--VHLTSAQLAALAARP-LPAGRWVAASCH-- 234 (312)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCEEEEECcH------HHHHhcCC--CE--EEcChhhcChHhhcc-CCCCCEEEEecC--
Confidence 345566778888888899999999999653 45555543 22 35321 12222333 334667777752
Q ss_pred ccchHHHHHHHHhCCCCcEEEec
Q 025333 126 SMKAQKAKKMLKVVPSERILLET 148 (254)
Q Consensus 126 ~~~~~~~~~~l~~ip~driLlET 148 (254)
+..++.++. ..+.|.+.+..
T Consensus 235 --~~~~~~~a~-~~~~dyi~~gp 254 (312)
T PRK08999 235 --DAEELARAQ-RLGVDFAVLSP 254 (312)
T ss_pred --CHHHHHHHH-hcCCCEEEECC
Confidence 234444443 45678887643
No 267
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=36.91 E-value=1.3e+02 Score=26.88 Aligned_cols=42 Identities=21% Similarity=0.245 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhcCCceEEeccch----HHHHHHHHHhcCCCCCcEEEEeC
Q 025333 55 GVFRQQLELAKELKRPASIHCVRA----FGDLLEIMKSVGPFPDGVIIHSY 101 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~a----~~~~l~il~~~~~~~~~~IiH~f 101 (254)
++.++.|+.+. |.|++ ....+ .+.+++++++++. .-+++|..
T Consensus 80 ~v~eaaL~~~~--G~~iI-NsIs~~~~~~~~~~~l~~~~g~--~vv~m~~~ 125 (261)
T PRK07535 80 AAIEAGLKVAK--GPPLI-NSVSAEGEKLEVVLPLVKKYNA--PVVALTMD 125 (261)
T ss_pred HHHHHHHHhCC--CCCEE-EeCCCCCccCHHHHHHHHHhCC--CEEEEecC
Confidence 44444444432 55543 33332 3456666666653 22344653
No 268
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=36.34 E-value=1.4e+02 Score=25.90 Aligned_cols=62 Identities=13% Similarity=0.122 Sum_probs=34.3
Q ss_pred HHHHHHHHhcCCceEEecc-----------------chHHHHHHHHHhc-C-CCCCcEEE-Ee---CCCCHHHHHHHH--
Q 025333 58 RQQLELAKELKRPASIHCV-----------------RAFGDLLEIMKSV-G-PFPDGVII-HS---YLGSAEMVPELS-- 112 (254)
Q Consensus 58 ~~ql~lA~~~~lPvilH~~-----------------~a~~~~l~il~~~-~-~~~~~~Ii-H~---fsg~~e~~~~~l-- 112 (254)
....+.|++.|..|+||.+ ...+++...++.. . .+...+|- |. |+.+.+.++.++
T Consensus 35 ~~~a~~a~~~G~EvllhlPMep~~~~~~gp~~L~~~~~~~~i~~~l~~al~~vp~a~GvnNhmGS~~T~~~~~m~~vl~~ 114 (213)
T PF04748_consen 35 REWAERARAAGHEVLLHLPMEPKGYKDPGPGALLTGMSEEEIRKRLEAALARVPGAVGVNNHMGSRFTSDREAMRWVLEV 114 (213)
T ss_dssp HHHHHHHHHCT-EEEEEEEE--TTTT---TT-B-TTS-HHHHHHHHHHHHCCSTT-SEEEEEE-CCHHC-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEEeCCCCCCCCCCcccccccCCCCHHHHHHHHHHHHHHCCCcEEEecCCCccccCCHHHHHHHHHH
Confidence 3567889999999999999 2344555444432 1 11233455 73 455666666554
Q ss_pred --HCCcEEe
Q 025333 113 --KLGAYFS 119 (254)
Q Consensus 113 --~~G~y~s 119 (254)
+.|+||=
T Consensus 115 l~~~gl~Fv 123 (213)
T PF04748_consen 115 LKERGLFFV 123 (213)
T ss_dssp HHHTT-EEE
T ss_pred HHHcCCEEE
Confidence 4687763
No 269
>TIGR00681 kdpC K+-transporting ATPase, C subunit. This chain has a single predicted transmembrane region near the amino end. It is part of a K+-transport ATPase that contains two other membrane-bound subunits, KdpA and KdpB, and a small subunit KdpF. KdpA is the K+-translocating subunit, KdpB the ATP-hydrolyzing subunit. During assembly of the complex, KdpA and KdpC bind to each other. This interaction is thought to stabilize the complex [PubMed:9858692]. Data indicates that KdpC might connect the KdpA, the K+-transporting subunit, to KdpB, the ATP-hydrolyzing (energy providing) subunit [PubMed:9858692].
Probab=36.08 E-value=35 Score=29.24 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=29.4
Q ss_pred cccHHHHHHHHHhccCCCHHHHHHHHHHHHH-HhcCC
Q 025333 210 PANIHNVLDYVASLLDMTKEELAELSYRNAI-RLFSY 245 (254)
Q Consensus 210 P~~l~~v~~~lA~i~~~~~eev~~~~~~N~~-~~f~~ 245 (254)
|.....=+..||+.+|+++++|.+++.+|.. +.|++
T Consensus 133 p~aA~~Qv~RVA~argl~~~~v~~LI~~~t~~~~lG~ 169 (187)
T TIGR00681 133 PAAAQAQFPRVAKARNISPQQLQSLITKHTEGRFLGI 169 (187)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHhcCCCCCc
Confidence 5555556678999999999999999999998 45555
No 270
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=35.71 E-value=90 Score=25.40 Aligned_cols=50 Identities=12% Similarity=0.213 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHHHHHHhcCCceEEeccch--------HHHHHHHHHhcCCCCCcEEE
Q 025333 49 DFMDQVGVFRQQLELAKELKRPASIHCVRA--------FGDLLEIMKSVGPFPDGVII 98 (254)
Q Consensus 49 ~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a--------~~~~l~il~~~~~~~~~~Ii 98 (254)
.++.-.+.|++.++.|+++|.-+.++.... .+++.+++++.+....++.+
T Consensus 106 ~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~ 163 (213)
T PF01261_consen 106 NWERLAENLRELAEIAEEYGVRIALENHPGPFSETPFSVEEIYRLLEEVDSPNVGICF 163 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSSSEESSHHHHHHHHHHHTTTTEEEEE
T ss_pred HHHHHHHHHHHHHhhhhhhcceEEEecccCccccchhhHHHHHHHHhhcCCCcceEEE
Confidence 345566677788888888888888887652 17788888887643334444
No 271
>cd01305 archeal_chlorohydrolases Predicted chlorohydrolases. These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases.
Probab=35.45 E-value=93 Score=27.16 Aligned_cols=57 Identities=21% Similarity=0.183 Sum_probs=40.7
Q ss_pred HHHhcCCceEEeccchHHHHHHHHHhcCCCCCcEEEEeCCC------CHHHHHHHHHCCcEEeeccc
Q 025333 63 LAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLG------SAEMVPELSKLGAYFSFSGF 123 (254)
Q Consensus 63 lA~~~~lPvilH~~~a~~~~l~il~~~~~~~~~~IiH~fsg------~~e~~~~~l~~G~y~s~~~~ 123 (254)
.+.+++..++.||....++.++++++.+. .+.||-+. ...-++++++.|+-++++..
T Consensus 159 ~~~~~~~~~i~H~~~l~~~~~~~la~~g~----~v~~~P~sn~~l~~g~~p~~~l~~~Gv~v~lGtD 221 (263)
T cd01305 159 RALDLEPDLLVHGTHLTDEDLELVRENGV----PVVLCPRSNLYFGVGIPPVAELLKLGIKVLLGTD 221 (263)
T ss_pred HHHhCCCCEEEEcCCCCHHHHHHHHHcCC----cEEEChhhHHHhCCCCCCHHHHHHCCCcEEEECC
Confidence 33444667889999988888999998764 36677432 22346788889998888753
No 272
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=35.41 E-value=2.4e+02 Score=25.81 Aligned_cols=59 Identities=25% Similarity=0.260 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhcCCceEEeccch-------HHHHH----HHHHhcCCCCCcEEEEeCCC-CHHHHHHHHHCCc
Q 025333 55 GVFRQQLELAKELKRPASIHCVRA-------FGDLL----EIMKSVGPFPDGVIIHSYLG-SAEMVPELSKLGA 116 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~a-------~~~~l----~il~~~~~~~~~~IiH~fsg-~~e~~~~~l~~G~ 116 (254)
+...+.|+.|++.+-||+|-.-.. ...+. .+.++++ ..+++|.--| +.+...+.++.|+
T Consensus 29 E~~~AileaA~e~~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~---vPV~lHlDHg~~~~~~~~ai~~GF 99 (286)
T COG0191 29 ETLQAILEAAEEEKSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYG---VPVALHLDHGASFEDCKQAIRAGF 99 (286)
T ss_pred HHHHHHHHHHHHhCCCEEEEecccHHHHhchHHHHHHHHHHHHHHCC---CCEEEECCCCCCHHHHHHHHhcCC
Confidence 667888999999999999987752 12222 3444554 3478874444 7888888888874
No 273
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=35.33 E-value=81 Score=28.13 Aligned_cols=49 Identities=24% Similarity=0.224 Sum_probs=37.3
Q ss_pred CHHHHHHHHHCCcEEeecccccccchHHHHHHHHhCCCCcEEEecCCCCC
Q 025333 104 SAEMVPELSKLGAYFSFSGFLMSMKAQKAKKMLKVVPSERILLETDAPDA 153 (254)
Q Consensus 104 ~~e~~~~~l~~G~y~s~~~~~~~~~~~~~~~~l~~ip~driLlETD~P~~ 153 (254)
+.+.++++++.|+-.=+-|.....+.+.++++++.+| +||++-=|+=..
T Consensus 86 s~~~v~~ll~~G~~rViiGt~av~~p~~v~~~~~~~g-~rivv~lD~r~g 134 (241)
T COG0106 86 SLEDVEALLDAGVARVIIGTAAVKNPDLVKELCEEYG-DRIVVALDARDG 134 (241)
T ss_pred CHHHHHHHHHCCCCEEEEecceecCHHHHHHHHHHcC-CcEEEEEEccCC
Confidence 6788889999886444444433446677899999999 999999998653
No 274
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=35.02 E-value=3.8e+02 Score=26.06 Aligned_cols=87 Identities=14% Similarity=0.137 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHHHHHHhcCCceEEeccchHHHHHHHHHhcCCCCCcEEEEeCC--CCHHHHHHHHHCCcEEeecccccc
Q 025333 49 DFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYL--GSAEMVPELSKLGAYFSFSGFLMS 126 (254)
Q Consensus 49 ~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a~~~~l~il~~~~~~~~~~IiH~fs--g~~e~~~~~l~~G~y~s~~~~~~~ 126 (254)
+.+.-.+..++..+++++++.+++||.+- ++..+.+. .+ +|--. .+...++..+..+..+|++..
T Consensus 332 ~~~~~~~~a~~l~~~~~~~~~~liind~~------~lA~~~~a--dG--vHl~~~d~~~~~~r~~~~~~~~iG~S~h--- 398 (502)
T PLN02898 332 ETREFIEEAKACLAICRSYGVPLLINDRV------DVALACDA--DG--VHLGQSDMPVRLARSLLGPGKIIGVSCK--- 398 (502)
T ss_pred CHHHHHHHHHHHHHHHHHhCCEEEEcChH------HHHHhcCC--CE--EEeChHhcCHHHHHHhcCCCCEEEEeCC---
Confidence 44455677777888899999999999662 45555543 22 35321 234455555555778887742
Q ss_pred cchHHHHHHHHhCCCCcEE----EecCC
Q 025333 127 MKAQKAKKMLKVVPSERIL----LETDA 150 (254)
Q Consensus 127 ~~~~~~~~~l~~ip~driL----lETD~ 150 (254)
+..+++.+. +.+.|.|. ++|++
T Consensus 399 -~~~e~~~a~-~~gadyi~~gpif~t~t 424 (502)
T PLN02898 399 -TPEQAEQAW-KDGADYIGCGGVFPTNT 424 (502)
T ss_pred -CHHHHHHHh-hcCCCEEEECCeecCCC
Confidence 234454443 45889984 45555
No 275
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=34.81 E-value=71 Score=28.28 Aligned_cols=54 Identities=20% Similarity=0.099 Sum_probs=34.3
Q ss_pred eecCCCCCCCC--CCCHHHHHHHHHHHHHHHHhcCCceEEec-c-------------chHHHHHHHHHhc
Q 025333 36 EIGLDKGSKGR--EIDFMDQVGVFRQQLELAKELKRPASIHC-V-------------RAFGDLLEIMKSV 89 (254)
Q Consensus 36 EiGLD~~~~~~--~~~~~~Q~~vf~~ql~lA~~~~lPvilH~-~-------------~a~~~~l~il~~~ 89 (254)
-|+||-...+. ...-+.|.++++.+|+-+.+....|++|- + ...++++++++++
T Consensus 124 ~i~Lds~~~g~~~G~l~~~ql~wL~~~L~~~~~~~~vv~~hH~P~~~~~~~~d~~~l~n~~~l~~ll~~~ 193 (275)
T PRK11148 124 ILLLDSQVFGVPHGELSEYQLEWLERKLADAPERHTLVLLHHHPLPAGCAWLDQHSLRNAHELAEVLAKF 193 (275)
T ss_pred EEEecCCCCCCcCCEeCHHHHHHHHHHHhhCCCCCeEEEEcCCCCCCCcchhhccCCCCHHHHHHHHhcC
Confidence 36777543221 11236899999999988765444566763 2 1235788999876
No 276
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=34.44 E-value=3.3e+02 Score=24.80 Aligned_cols=61 Identities=23% Similarity=0.181 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhcCCceEEeccch-------HHHHHH----HHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCc
Q 025333 55 GVFRQQLELAKELKRPASIHCVRA-------FGDLLE----IMKSVGPFPDGVIIHSYLGSAEMVPELSKLGA 116 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~a-------~~~~l~----il~~~~~~~~~~IiH~fsg~~e~~~~~l~~G~ 116 (254)
+..+..++.|++.+.||+|-.-.. .+.+.. +.++.+. ...+.+|--=|+.+.++++++.|+
T Consensus 29 e~~~avi~aAe~~~sPvIlq~s~~~~~~~~~~~~~~~~~~~~a~~~~~-~vPV~lHLDH~~~~~i~~ai~~Gf 100 (293)
T PRK07315 29 EWTQAILRAAEAKKAPVLIQTSMGAAKYMGGYKVCKNLIENLVESMGI-TVPVAIHLDHGHYEDALECIEVGY 100 (293)
T ss_pred HHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCC-CCcEEEECCCCCHHHHHHHHHcCC
Confidence 678899999999999999976542 222223 3333321 123677633346889999999874
No 277
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=34.43 E-value=3e+02 Score=23.61 Aligned_cols=17 Identities=6% Similarity=0.157 Sum_probs=8.0
Q ss_pred HHHHHHHHhcCCceEEe
Q 025333 58 RQQLELAKELKRPASIH 74 (254)
Q Consensus 58 ~~ql~lA~~~~lPvilH 74 (254)
....+++++++.|+++|
T Consensus 66 ~~i~~i~~~~~~~l~v~ 82 (241)
T PRK13585 66 EAIEKIIEAVGVPVQLG 82 (241)
T ss_pred HHHHHHHHHcCCcEEEc
Confidence 33334444455555554
No 278
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.41 E-value=31 Score=27.67 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHhcCCceEEeccc
Q 025333 51 MDQVGVFRQQLELAKELKRPASIHCVR 77 (254)
Q Consensus 51 ~~Q~~vf~~ql~lA~~~~lPvilH~~~ 77 (254)
+.+.+.|.+.|+ +.+-||.-||+.
T Consensus 73 ~~dV~~f~~Al~---eaegPVlayCrs 96 (130)
T COG3453 73 EADVEAFQRALD---EAEGPVLAYCRS 96 (130)
T ss_pred HHHHHHHHHHHH---HhCCCEEeeecC
Confidence 444444444443 234555555554
No 279
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=34.40 E-value=2.8e+02 Score=26.04 Aligned_cols=65 Identities=20% Similarity=0.199 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhcCCceEEeccc-hH---------------------HHHHHHH----HhcCCCCCcEEEE---eCCCCH
Q 025333 55 GVFRQQLELAKELKRPASIHCVR-AF---------------------GDLLEIM----KSVGPFPDGVIIH---SYLGSA 105 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~-a~---------------------~~~l~il----~~~~~~~~~~IiH---~fsg~~ 105 (254)
+..++.++.|++.+.||+|-.-. .. ..+..++ ++++ ..+++| |..-+.
T Consensus 24 e~~~Avi~aAee~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~---VPV~lHLDH~~~~~~ 100 (340)
T cd00453 24 DSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYG---VPVILHTDHCAKKLL 100 (340)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCcchHHHhCCCcccccccchhhhhhHHHHHHHHHHHHHHCC---CCEEEEcCCCCCCCH
Confidence 56678889999999999986654 11 2222333 3333 235665 432267
Q ss_pred HHHHHHHHCC-cEEeecc
Q 025333 106 EMVPELSKLG-AYFSFSG 122 (254)
Q Consensus 106 e~~~~~l~~G-~y~s~~~ 122 (254)
+.+.++++.| +|++.++
T Consensus 101 e~i~~ai~~G~~~~~~~~ 118 (340)
T cd00453 101 PWIDGLLDAGEKHFAATG 118 (340)
T ss_pred HHHHHHHHcCCccccccC
Confidence 8899999998 5555444
No 280
>PF13541 ChlI: Subunit ChlI of Mg-chelatase
Probab=34.35 E-value=27 Score=27.69 Aligned_cols=33 Identities=24% Similarity=0.301 Sum_probs=20.4
Q ss_pred CCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 025333 29 TPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKR 69 (254)
Q Consensus 29 ~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~l 69 (254)
...+++||+|||-.-+ .. .-....+..|+++|.
T Consensus 80 ~~~~~~GEl~L~G~ir--~v------~~~~~~~~~A~~~G~ 112 (121)
T PF13541_consen 80 EDTVFIGELGLDGEIR--PV------PGILPRIIEAKKLGF 112 (121)
T ss_pred CCEEEEEEecCCccEE--ec------CcHHHHHHHHHHCCC
Confidence 3679999999997642 11 113334446677774
No 281
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=34.31 E-value=3.4e+02 Score=24.17 Aligned_cols=99 Identities=16% Similarity=0.147 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHhcCCceEEeccc----hHHH---HHHHHHhcCCC--CCcEE-----EEeCCCCHHH---HHHHHHC
Q 025333 52 DQVGVFRQQLELAKELKRPASIHCVR----AFGD---LLEIMKSVGPF--PDGVI-----IHSYLGSAEM---VPELSKL 114 (254)
Q Consensus 52 ~Q~~vf~~ql~lA~~~~lPvilH~~~----a~~~---~l~il~~~~~~--~~~~I-----iH~fsg~~e~---~~~~l~~ 114 (254)
.++..|.+-++.|+++|..++==+-+ ..++ +++.+++.+.. +.-++ -+.. +..+. +++.++.
T Consensus 68 ~~q~~~~~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~~EvG~K~~~~~~~~-~~~~~i~~~~~~LeA 146 (237)
T TIGR03849 68 HSKGKFDEYLNECDELGFEAVEISDGSMEISLEERCNLIERAKDNGFMVLSEVGKKSPEKDSEL-TPDDRIKLINKDLEA 146 (237)
T ss_pred HHhhhHHHHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCeEeccccccCCcccccC-CHHHHHHHHHHHHHC
Confidence 45588999999999999987633332 2333 34444443311 00000 0011 22233 3344777
Q ss_pred CcEEeec-c-----------cccccchHHHHHHHHhCCCCcEEEecCCC
Q 025333 115 GAYFSFS-G-----------FLMSMKAQKAKKMLKVVPSERILLETDAP 151 (254)
Q Consensus 115 G~y~s~~-~-----------~~~~~~~~~~~~~l~~ip~driLlETD~P 151 (254)
|.+.=+- + .....+.+.+.+++.++|++++++|-..|
T Consensus 147 GA~~ViiEarEsg~~~Gi~~~~g~~r~d~v~~i~~~l~~eklifEAp~k 195 (237)
T TIGR03849 147 GADYVIIEGRESGKNIGLFDEKGNVKEDELDVLAENVDINKVIFEAPQK 195 (237)
T ss_pred CCcEEEEeehhcCCCcceeCCCCCCchHHHHHHHhhCChhcEEEECCCH
Confidence 7643222 1 11234566678899999999999997654
No 282
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=33.92 E-value=2e+02 Score=26.01 Aligned_cols=60 Identities=20% Similarity=0.162 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhcCCceEEeccch-------HHHHHH----HHHhcCCCCCcEEEE-eCCCCHHHHHHHHHCCc
Q 025333 55 GVFRQQLELAKELKRPASIHCVRA-------FGDLLE----IMKSVGPFPDGVIIH-SYLGSAEMVPELSKLGA 116 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~a-------~~~~l~----il~~~~~~~~~~IiH-~fsg~~e~~~~~l~~G~ 116 (254)
+..+..++.|++.+.||+|-.-.. .+.+.. +.++++. ..+++| .-..+.+.++++++.|+
T Consensus 27 e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~~~--vpv~lhlDH~~~~e~i~~ai~~Gf 98 (282)
T TIGR01859 27 EWTQAILEAAEEENSPVIIQVSEGAIKYMGGYKMAVAMVKTLIERMSI--VPVALHLDHGSSYESCIKAIKAGF 98 (282)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCcchhhccCcHHHHHHHHHHHHHHCCC--CeEEEECCCCCCHHHHHHHHHcCC
Confidence 558888999999999998865431 223333 3333321 236677 33346888888888875
No 283
>PRK06189 allantoinase; Provisional
Probab=33.79 E-value=1.6e+02 Score=28.18 Aligned_cols=23 Identities=9% Similarity=0.157 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhcCCceEEeccch
Q 025333 56 VFRQQLELAKELKRPASIHCVRA 78 (254)
Q Consensus 56 vf~~ql~lA~~~~lPvilH~~~a 78 (254)
.+.+.++.++++++++.+||.+.
T Consensus 165 ~l~~~~~~~~~~~~~~~~H~e~~ 187 (451)
T PRK06189 165 TLYEGMKEIAALGKILALHAESD 187 (451)
T ss_pred HHHHHHHHHHhcCCeEEEECCCh
Confidence 45566677888999999999873
No 284
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=33.70 E-value=3.7e+02 Score=24.47 Aligned_cols=61 Identities=25% Similarity=0.210 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhcCCceEEeccch-------HHHHHHHHH----hcCCCCCcEEEEeC-CCCHHHHHHHHHCCc
Q 025333 55 GVFRQQLELAKELKRPASIHCVRA-------FGDLLEIMK----SVGPFPDGVIIHSY-LGSAEMVPELSKLGA 116 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~a-------~~~~l~il~----~~~~~~~~~IiH~f-sg~~e~~~~~l~~G~ 116 (254)
+..+..++.|++.+.||+|-.-.. .+.+..+++ +.+. ...+.+|-- ..+.+.+.++++.||
T Consensus 29 e~~~avi~AAee~~sPvIlq~~~~~~~~~~g~~~~~~~~~~~a~~~~~-~VPV~lHLDHg~~~e~i~~ai~~Gf 101 (288)
T TIGR00167 29 ETINAVLEAAAEEKSPVIIQFSNGAAKYIAGLGAISAMVKAMSEAYPY-GVPVALHLDHGASEEDCAQAVKAGF 101 (288)
T ss_pred HHHHHHHHHHHHHCCCEEEECCcchhhccCCHHHHHHHHHHHHHhccC-CCcEEEECCCCCCHHHHHHHHHcCC
Confidence 678899999999999999976542 223333333 3311 223666521 136889999999883
No 285
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=33.43 E-value=3.1e+02 Score=23.44 Aligned_cols=122 Identities=19% Similarity=0.129 Sum_probs=62.5
Q ss_pred ChhHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccchHHHHH---HHHHhcCC
Q 025333 15 TPNWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLL---EIMKSVGP 91 (254)
Q Consensus 15 ~~~~l~~l~~ll~~~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a~~~~l---~il~~~~~ 91 (254)
+.+....+.+.|.+-.+-.| |+|..... +...+.+++..+.... ..+..+++-...++- +.+...+.
T Consensus 12 ~~~~k~~i~~~L~~~Gv~~i-Evg~~~~~-------~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~ 81 (237)
T PF00682_consen 12 STEEKLEIAKALDEAGVDYI-EVGFPFAS-------EDDFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGI 81 (237)
T ss_dssp -HHHHHHHHHHHHHHTTSEE-EEEHCTSS-------HHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHhCCCEE-EEcccccC-------HHHHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccC
Confidence 44555556566666556666 89954432 3455666666666655 667778886555444 44445554
Q ss_pred CCCcEEEEeCCC---------C----HHHHHH----HHHCCcEEeecccccc-cchHHHHHH---HHhCCCCcEEEe
Q 025333 92 FPDGVIIHSYLG---------S----AEMVPE----LSKLGAYFSFSGFLMS-MKAQKAKKM---LKVVPSERILLE 147 (254)
Q Consensus 92 ~~~~~IiH~fsg---------~----~e~~~~----~l~~G~y~s~~~~~~~-~~~~~~~~~---l~~ip~driLlE 147 (254)
...+ ++-..+. + .+.+.+ +.+.|+.+.|+..-.. ...+.+.++ +...+.|+|-+-
T Consensus 82 ~~i~-i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~ 157 (237)
T PF00682_consen 82 DIIR-IFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLA 157 (237)
T ss_dssp SEEE-EEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEE
T ss_pred CEEE-ecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEee
Confidence 2111 1122211 0 223333 3357887777753211 223444443 444588888765
No 286
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=33.42 E-value=1.6e+02 Score=27.64 Aligned_cols=61 Identities=15% Similarity=0.135 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhcCCceEEeccchH------HHHHHHHHh---cCCCCCcEEEEeC-CCCHHHHHHHHHCCc
Q 025333 55 GVFRQQLELAKELKRPASIHCVRAF------GDLLEIMKS---VGPFPDGVIIHSY-LGSAEMVPELSKLGA 116 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~a~------~~~l~il~~---~~~~~~~~IiH~f-sg~~e~~~~~l~~G~ 116 (254)
+..+..++.|++.+-||+|-+-... +.+..+++. ... ...+++|-- ..+.+.++++++.|+
T Consensus 29 e~~~avi~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~v~~~ae~~~-~VPVaLHLDHg~~~e~i~~Ai~~GF 99 (347)
T PRK13399 29 EQILAIMEAAEATDSPVILQASRGARKYAGDAMLRHMVLAAAEMYP-DIPICLHQDHGNSPATCQSAIRSGF 99 (347)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhcC-CCcEEEECCCCCCHHHHHHHHhcCC
Confidence 6788999999999999999775421 222233322 111 123666621 136889999999884
No 287
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=33.34 E-value=2.6e+02 Score=22.58 Aligned_cols=58 Identities=14% Similarity=0.153 Sum_probs=36.3
Q ss_pred hHHHHHHHHhhcCCceEEEeecC--CCCCC------CCCCCHHHHHHHHHHHHHHHHhcCCc-eEEecc
Q 025333 17 NWFSTLKEFFEITPAAAVGEIGL--DKGSK------GREIDFMDQVGVFRQQLELAKELKRP-ASIHCV 76 (254)
Q Consensus 17 ~~l~~l~~ll~~~~~~aIGEiGL--D~~~~------~~~~~~~~Q~~vf~~ql~lA~~~~lP-vilH~~ 76 (254)
..++.+.+++++..+. |..+.. ..... .... .+.-.+.+++.+++|+++|.+ +++|+.
T Consensus 27 ~~~~~~~~~~~~~gl~-i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg~~~i~~~~g 93 (213)
T PF01261_consen 27 DEAEELRRLLEDYGLK-IASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLGAKYIVVHSG 93 (213)
T ss_dssp HHHHHHHHHHHHTTCE-EEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHTBSEEEEECT
T ss_pred HHHHHHHHHHHHcCCe-EEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhCCCceeecCc
Confidence 5688888888876543 222222 22211 0111 445578899999999999987 557866
No 288
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=33.06 E-value=3.4e+02 Score=23.85 Aligned_cols=86 Identities=21% Similarity=0.350 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhcCCceEEeccch--HHHHHHHHHhcCCCCCcEEEEe-CC----------CCHHHHHHHHHCCcEEeecc
Q 025333 56 VFRQQLELAKELKRPASIHCVRA--FGDLLEIMKSVGPFPDGVIIHS-YL----------GSAEMVPELSKLGAYFSFSG 122 (254)
Q Consensus 56 vf~~ql~lA~~~~lPvilH~~~a--~~~~l~il~~~~~~~~~~IiH~-fs----------g~~e~~~~~l~~G~y~s~~~ 122 (254)
-.+..++.|+++|+-+++-.-+. +++..+-+++.++ .-+++|- .. .+.+.++++.+.|+-++++|
T Consensus 94 TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~gv--d~~~~H~g~D~q~~G~~~~~~~l~~ik~~~~~g~~vAVaG 171 (217)
T COG0269 94 TIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKELGV--DQVILHRGRDAQAAGKSWGEDDLEKIKKLSDLGAKVAVAG 171 (217)
T ss_pred HHHHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHHhCC--CEEEEEecccHhhcCCCccHHHHHHHHHhhccCceEEEec
Confidence 45677889999999998877764 5777788887775 3467782 21 12335566667899999999
Q ss_pred cccccchHHHHHHHHhCCCCcEEEe
Q 025333 123 FLMSMKAQKAKKMLKVVPSERILLE 147 (254)
Q Consensus 123 ~~~~~~~~~~~~~l~~ip~driLlE 147 (254)
.++ .+.+. .+..+|.+-+.+.
T Consensus 172 GI~---~~~i~-~~~~~~~~ivIvG 192 (217)
T COG0269 172 GIT---PEDIP-LFKGIGADIVIVG 192 (217)
T ss_pred CCC---HHHHH-HHhcCCCCEEEEC
Confidence 764 44443 4455566666654
No 289
>PRK14003 potassium-transporting ATPase subunit C; Provisional
Probab=32.68 E-value=43 Score=28.90 Aligned_cols=36 Identities=19% Similarity=0.294 Sum_probs=29.6
Q ss_pred cccHHHHHHHHHhccCCCHHHHHHHHHHHHH-HhcCC
Q 025333 210 PANIHNVLDYVASLLDMTKEELAELSYRNAI-RLFSY 245 (254)
Q Consensus 210 P~~l~~v~~~lA~i~~~~~eev~~~~~~N~~-~~f~~ 245 (254)
|..-..=+..||+.+|+++++|.+.+.+|.. +.||+
T Consensus 138 p~aA~~Qv~RVA~argl~~~~v~~LI~~~t~~~~lG~ 174 (194)
T PRK14003 138 PEAARAQIERVAKARGLPPDQLEILITKNTDGRFLGI 174 (194)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHhhCCCCCC
Confidence 5555666678999999999999999999998 45555
No 290
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=32.65 E-value=86 Score=24.29 Aligned_cols=28 Identities=14% Similarity=0.086 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHhcCCceEEeccch
Q 025333 51 MDQVGVFRQQLELAKELKRPASIHCVRA 78 (254)
Q Consensus 51 ~~Q~~vf~~ql~lA~~~~lPvilH~~~a 78 (254)
..+.......++.+.+.+.||.|||...
T Consensus 61 ~~~~~~~~~~i~~~~~~~~~VlVHC~~G 88 (138)
T smart00195 61 SPYFPEAVEFIEDAEKKGGKVLVHCQAG 88 (138)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEECCCC
Confidence 3344444455555556677888888764
No 291
>PF07611 DUF1574: Protein of unknown function (DUF1574); InterPro: IPR011468 This is a family of hypothetical proteins found in Leptospira interrogans and other bacteria.
Probab=32.47 E-value=76 Score=29.81 Aligned_cols=42 Identities=19% Similarity=0.084 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHHHHHHHhcCCceEEeccchHHHHHHHHHhcC
Q 025333 49 DFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVG 90 (254)
Q Consensus 49 ~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a~~~~l~il~~~~ 90 (254)
.-+.|...++..|.+|++.|.|+++=.+......-+++++.+
T Consensus 246 ~s~~q~~F~e~~L~~ake~~I~~vl~~P~V~~~~~~~~~~~~ 287 (345)
T PF07611_consen 246 FSETQFFFLEKFLKLAKENGIPVVLWWPKVSPPYEKLYKELK 287 (345)
T ss_pred CChhHHHHHHHHHHHHHHcCCcEEEEEeccCHHHHHHHHhhc
Confidence 347899999999999999999999999988877777777654
No 292
>PRK06801 hypothetical protein; Provisional
Probab=32.41 E-value=1.8e+02 Score=26.55 Aligned_cols=59 Identities=20% Similarity=0.151 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhcCCceEEeccch------HHHHHH----HHHhcCCCCCcEEEEeC-CCCHHHHHHHHHCCc
Q 025333 55 GVFRQQLELAKELKRPASIHCVRA------FGDLLE----IMKSVGPFPDGVIIHSY-LGSAEMVPELSKLGA 116 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~a------~~~~l~----il~~~~~~~~~~IiH~f-sg~~e~~~~~l~~G~ 116 (254)
+..+..++.|++.+.||+|-.-.. .+.+.. +.++.. ..+.+|.- ..+.+.+.++++.|+
T Consensus 29 e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~---vpV~lHlDH~~~~e~i~~Ai~~Gf 98 (286)
T PRK06801 29 HFLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARHD---IPVVLNLDHGLHFEAVVRALRLGF 98 (286)
T ss_pred HHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHCC---CCEEEECCCCCCHHHHHHHHHhCC
Confidence 677889999999999999876542 122333 333333 23666522 236788999999874
No 293
>PF12085 DUF3562: Protein of unknown function (DUF3562); InterPro: IPR021945 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 62 to 84 amino acids in length. This protein has two completely conserved residues (A and Y) that may be functionally important.
Probab=32.32 E-value=98 Score=22.02 Aligned_cols=31 Identities=16% Similarity=0.192 Sum_probs=26.8
Q ss_pred cHHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 025333 212 NIHNVLDYVASLLDMTKEELAELSYRNAIRL 242 (254)
Q Consensus 212 ~l~~v~~~lA~i~~~~~eev~~~~~~N~~~~ 242 (254)
++.++++.||+-.+++.++|.+....-...+
T Consensus 5 ~~~e~i~~iA~~t~~P~e~V~~my~dt~~~l 35 (66)
T PF12085_consen 5 NVDEVIRSIAEETGTPAETVRRMYDDTMREL 35 (66)
T ss_pred cHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 5788999999999999999998887776655
No 294
>PRK13994 potassium-transporting ATPase subunit C; Provisional
Probab=31.86 E-value=40 Score=29.65 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=29.2
Q ss_pred cccHHHHHHHHHhccCCCHHHHHHHHHHHHH-HhcCC
Q 025333 210 PANIHNVLDYVASLLDMTKEELAELSYRNAI-RLFSY 245 (254)
Q Consensus 210 P~~l~~v~~~lA~i~~~~~eev~~~~~~N~~-~~f~~ 245 (254)
|.+-..=+..+|+.+|+++++|.+.+.+|.. +.|++
T Consensus 165 p~aA~~Qv~RVA~argls~~~V~~LV~~~t~~~~lG~ 201 (222)
T PRK13994 165 PAYADLQVHRVAARNGLNVARVQKLVDEHTTGRTLGF 201 (222)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHccCCCccc
Confidence 5555566678999999999999999999998 34554
No 295
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=31.86 E-value=3.7e+02 Score=23.96 Aligned_cols=127 Identities=14% Similarity=0.046 Sum_probs=61.4
Q ss_pred hhHHHHHHHHhhcCCc-eEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccc----hHHHHHHHHHhcC
Q 025333 16 PNWFSTLKEFFEITPA-AAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVR----AFGDLLEIMKSVG 90 (254)
Q Consensus 16 ~~~l~~l~~ll~~~~~-~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~----a~~~~l~il~~~~ 90 (254)
.+.+++.-++..+..+ +.-|=+=+. ...++..|...++.|+++|...+==+-+ ..++-.+++++..
T Consensus 53 ~~~l~eki~l~~~~gV~v~~GGtl~E---------~a~~q~~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~~ 123 (244)
T PF02679_consen 53 EEILKEKIDLAHSHGVYVYPGGTLFE---------VAYQQGKFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKAK 123 (244)
T ss_dssp CHHHHHHHHHHHCTT-EEEE-HHHHH---------HHHHTT-HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCeEeCCcHHHH---------HHHhcChHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHHH
Confidence 3445555555554432 334322222 2345678888899999999887633333 2444455555543
Q ss_pred CCCCcEEEEeCCC---------C---HHHHHHHHHCCcEEeec-cc----------ccccchHHHHHHHHhCCCCcEEEe
Q 025333 91 PFPDGVIIHSYLG---------S---AEMVPELSKLGAYFSFS-GF----------LMSMKAQKAKKMLKVVPSERILLE 147 (254)
Q Consensus 91 ~~~~~~IiH~fsg---------~---~e~~~~~l~~G~y~s~~-~~----------~~~~~~~~~~~~l~~ip~driLlE 147 (254)
...-+++-.--.- . .+.++..++.|.+.=+- +. ....+.+.+.+++..+|+++|++|
T Consensus 124 ~~Gf~v~~EvG~K~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEarEsG~~Gi~~~~g~~r~d~v~~i~~~~~~~~lifE 203 (244)
T PF02679_consen 124 EEGFKVLSEVGKKDPESDFSLDPEELIEQAKRDLEAGADKVIIEARESGKGGIYDNDGEVRTDLVEKIIERLGLEKLIFE 203 (244)
T ss_dssp CTTSEEEEEES-SSHHHHTT--CCHHHHHHHHHHHHTECEEEE--TTT--STTB-TTS-B-HHHHHHHHTTS-GGGEEEE
T ss_pred HCCCEEeecccCCCchhcccCCHHHHHHHHHHHHHCCCCEEEEeeeccCCCCccCCCCCccHHHHHHHHHhCCHhHEEEe
Confidence 2111222211100 0 34445555667544332 11 123456778899999999999999
Q ss_pred cCCC
Q 025333 148 TDAP 151 (254)
Q Consensus 148 TD~P 151 (254)
-..|
T Consensus 204 Ap~k 207 (244)
T PF02679_consen 204 APQK 207 (244)
T ss_dssp --SH
T ss_pred CCCH
Confidence 7443
No 296
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=31.39 E-value=1.5e+02 Score=27.72 Aligned_cols=39 Identities=10% Similarity=0.011 Sum_probs=18.5
Q ss_pred eeeccccccccCChhHHHHHHHHhhc-CCceEEEeecCCCC
Q 025333 3 WVCFIFRFVQERTPNWFSTLKEFFEI-TPAAAVGEIGLDKG 42 (254)
Q Consensus 3 ~~G~HP~~~~~~~~~~l~~l~~ll~~-~~~~aIGEiGLD~~ 42 (254)
|+.+.|.|-.. .......|..+..+ ++-+.|-|+|-.+.
T Consensus 203 GlSyYP~w~~~-l~~l~~~l~~l~~ry~K~V~V~Et~yp~t 242 (332)
T PF07745_consen 203 GLSYYPFWHGT-LEDLKNNLNDLASRYGKPVMVVETGYPWT 242 (332)
T ss_dssp EEEE-STTST--HHHHHHHHHHHHHHHT-EEEEEEE---SB
T ss_pred EEecCCCCcch-HHHHHHHHHHHHHHhCCeeEEEecccccc
Confidence 56677877662 22223333333322 56788889997765
No 297
>PF09124 Endonuc-dimeris: T4 recombination endonuclease VII, dimerisation; InterPro: IPR015208 This entry represents a dimerisation domain predominantly found in Bacteriophage T4 recombination endonuclease VII. It adopts a helical secondary structure, with three alpha helices oriented parallel to each other. As well as mediating dimerisation of the protein, this domain is also involved in binding to the DNA major groove []. ; PDB: 1EN7_B 1E7L_B 2QNF_A 2QNC_A 1E7D_A.
Probab=31.35 E-value=36 Score=23.23 Aligned_cols=50 Identities=28% Similarity=0.482 Sum_probs=24.0
Q ss_pred ccccccccCChhHHHHH--HHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 025333 6 FIFRFVQERTPNWFSTL--KEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELA 64 (254)
Q Consensus 6 ~HP~~~~~~~~~~l~~l--~~ll~~~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA 64 (254)
|||.++++... +..+| .++..+ ..+.|++|... ...+.=.++|+.|+.-+
T Consensus 1 iHP~fv~D~~K-~FSRl~k~eMiae-----m~~~G~~y~~~---~tK~~Lvk~fkKql~k~ 52 (54)
T PF09124_consen 1 IHPQFVPDKVK-WFSRLTKPEMIAE-----MDSYGFEYNEK---DTKAQLVKIFKKQLKKA 52 (54)
T ss_dssp B-THHHHHHHH-HHHTS-HHHHHHH-----HHHTT----TT---S-HHHHHHHHHHHHHHH
T ss_pred CCccchhHHHH-HHHhcCHHHHHHH-----HHHhCCcCCcc---ccHHHHHHHHHHHHHHh
Confidence 79999986421 12221 112111 23578998743 34566678999998754
No 298
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=30.42 E-value=4.5e+02 Score=24.47 Aligned_cols=28 Identities=18% Similarity=0.242 Sum_probs=22.9
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 025333 215 NVLDYVASLLDMTKEELAELSYRNAIRL 242 (254)
Q Consensus 215 ~v~~~lA~i~~~~~eev~~~~~~N~~~~ 242 (254)
.+.+.+.++..++.+++.++=++-+.++
T Consensus 289 ~~~~~l~~l~~~~~~~l~~~R~~k~~~~ 316 (322)
T CHL00198 289 KLIRQLDFLKILSPSELKAHRYEKFRKL 316 (322)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 3466888999999999999988877765
No 299
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=30.41 E-value=1.6e+02 Score=26.25 Aligned_cols=20 Identities=30% Similarity=0.273 Sum_probs=13.9
Q ss_pred HHHHHHHHHhcCCceE-Eecc
Q 025333 57 FRQQLELAKELKRPAS-IHCV 76 (254)
Q Consensus 57 f~~ql~lA~~~~lPvi-lH~~ 76 (254)
+...+++++++|.|++ +|..
T Consensus 107 ~~~~~~l~~~~~~~vV~m~~~ 127 (257)
T TIGR01496 107 DPAMLEVAAEYGVPLVLMHMR 127 (257)
T ss_pred CchhHHHHHHcCCcEEEEeCC
Confidence 4567777888888865 5654
No 300
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=30.30 E-value=2e+02 Score=23.10 Aligned_cols=92 Identities=18% Similarity=0.301 Sum_probs=49.6
Q ss_pred ChhHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccch------HHHHHHHHHh
Q 025333 15 TPNWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRA------FGDLLEIMKS 88 (254)
Q Consensus 15 ~~~~l~~l~~ll~~~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a------~~~~l~il~~ 88 (254)
+++.++.++.-++.+ +-+| |+=+-....+... .-+-.--|+..++.+.+ +..++|..... ...+++++++
T Consensus 12 pent~~a~~~a~~~g-~~~i-E~Dv~~tkDg~~v-v~Hdi~tL~e~l~~~~~-~~~i~leiK~~~~~~~~~~~l~~~i~~ 87 (189)
T cd08556 12 PENTLAAFRKALEAG-ADGV-ELDVQLTKDGVLV-VIHDIPTLEEVLELVKG-GVGLNIELKEPTRYPGLEAKVAELLRE 87 (189)
T ss_pred CchHHHHHHHHHHcC-CCEE-EEEeeEcCCCCEE-EEcCCCCHHHHHHhccc-CcEEEEEECCCCCchhHHHHHHHHHHH
Confidence 344556665555443 2233 5544333221100 00013346666677766 77777777763 3457777777
Q ss_pred cCCCCCcEEEEeCCCCHHHHHHHHH
Q 025333 89 VGPFPDGVIIHSYLGSAEMVPELSK 113 (254)
Q Consensus 89 ~~~~~~~~IiH~fsg~~e~~~~~l~ 113 (254)
++. ..++++.+|+ .+.++.+.+
T Consensus 88 ~~~-~~~v~i~s~~--~~~l~~~~~ 109 (189)
T cd08556 88 YGL-EERVVVSSFD--HEALRALKE 109 (189)
T ss_pred cCC-cCCEEEEeCC--HHHHHHHHH
Confidence 763 3567888874 556666554
No 301
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=30.09 E-value=49 Score=24.91 Aligned_cols=23 Identities=17% Similarity=0.112 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHhcCCceEEecc
Q 025333 54 VGVFRQQLELAKELKRPASIHCV 76 (254)
Q Consensus 54 ~~vf~~ql~lA~~~~lPvilH~~ 76 (254)
..-..+..++|+++|+|+++|+-
T Consensus 32 it~~~~i~~~A~~~gi~~~~h~~ 54 (111)
T PF13378_consen 32 ITEALRIAALAEAHGIPVMPHSM 54 (111)
T ss_dssp HHHHHHHHHHHHHTT-EEEEBSS
T ss_pred HHHHHHHHHHHHHhCCCEEecCC
Confidence 34567888999999999999996
No 302
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=30.07 E-value=3.8e+02 Score=23.42 Aligned_cols=125 Identities=19% Similarity=0.186 Sum_probs=65.8
Q ss_pred hHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHH-------------HHHHHHHHHHHhcCCceEEecc-c-----
Q 025333 17 NWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQV-------------GVFRQQLELAKELKRPASIHCV-R----- 77 (254)
Q Consensus 17 ~~l~~l~~ll~~~~~~aIGEiGLD~~~~~~~~~~~~Q~-------------~vf~~ql~lA~~~~lPvilH~~-~----- 77 (254)
.+.+.++.+. +..+-+| |+|+++...- ...-..|. ..|+-.-++.+..+.|+++=+- +
T Consensus 15 ~~~~~~~~l~-~~Gad~i-el~iPfsdPv-~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~~~~ 91 (242)
T cd04724 15 TTLEILKALV-EAGADII-ELGIPFSDPV-ADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPILQY 91 (242)
T ss_pred HHHHHHHHHH-HCCCCEE-EECCCCCCCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHHHHh
Confidence 3444555544 4557777 9999886431 12234553 4444444444456889655333 2
Q ss_pred hHHHHHHHHHhcCCCCCcEEEEeC--CCCHHHHHHHHHCCcEEeecccccccchHHHHHHHHhCCCCcEEEec
Q 025333 78 AFGDLLEIMKSVGPFPDGVIIHSY--LGSAEMVPELSKLGAYFSFSGFLMSMKAQKAKKMLKVVPSERILLET 148 (254)
Q Consensus 78 a~~~~l~il~~~~~~~~~~IiH~f--sg~~e~~~~~l~~G~y~s~~~~~~~~~~~~~~~~l~~ip~driLlET 148 (254)
..+.+++.+.+.|. ..+++|-- .-..+..+.+.+.|+-.++--.++. ..+.++.+++. ..+-+++=|
T Consensus 92 G~~~fi~~~~~aG~--~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T-~~~~i~~i~~~-~~~~vy~~s 160 (242)
T cd04724 92 GLERFLRDAKEAGV--DGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTT-PDERIKKIAEL-ASGFIYYVS 160 (242)
T ss_pred CHHHHHHHHHHCCC--cEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHhh-CCCCEEEEe
Confidence 24778888888875 45677422 1112233344456875554322221 23556666652 245565544
No 303
>PRK08185 hypothetical protein; Provisional
Probab=29.96 E-value=3.4e+02 Score=24.70 Aligned_cols=58 Identities=21% Similarity=0.158 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhcCCceEEeccchH-----HHHHHHH----HhcCCCCCcEEEEeCC-CCHHHHHHHHHCC
Q 025333 55 GVFRQQLELAKELKRPASIHCVRAF-----GDLLEIM----KSVGPFPDGVIIHSYL-GSAEMVPELSKLG 115 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~a~-----~~~l~il----~~~~~~~~~~IiH~fs-g~~e~~~~~l~~G 115 (254)
+..+..++.|++.+.||+|-.-... .++..++ ++.. ..+.+|.-- .+.+.++++++.|
T Consensus 24 e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~---vPV~lHLDHg~~~e~i~~ai~~G 91 (283)
T PRK08185 24 CFLRAVVEEAEANNAPAIIAIHPNELDFLGDNFFAYVRERAKRSP---VPFVIHLDHGATIEDVMRAIRCG 91 (283)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcchhhhccHHHHHHHHHHHHHCC---CCEEEECCCCCCHHHHHHHHHcC
Confidence 5667778888888888887654321 1233333 3332 235665221 2577888888876
No 304
>PLN02858 fructose-bisphosphate aldolase
Probab=29.85 E-value=2.1e+02 Score=31.93 Aligned_cols=59 Identities=17% Similarity=0.096 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhcCCceEEeccchHH-----HHH----HHHHhcCCCCCcEEEEeCC-CCHHHHHHHHHCCc
Q 025333 55 GVFRQQLELAKELKRPASIHCVRAFG-----DLL----EIMKSVGPFPDGVIIHSYL-GSAEMVPELSKLGA 116 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~a~~-----~~l----~il~~~~~~~~~~IiH~fs-g~~e~~~~~l~~G~ 116 (254)
+..+..++.|++.+-||+|-.-.... ++. .+.+++. ..+.+|--- .+.+.+.++++.||
T Consensus 1125 e~~~avi~aAe~~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~---vpV~lHLDHg~~~~~i~~ai~~Gf 1193 (1378)
T PLN02858 1125 EGIEAVVAAAEAEKSPAILQVHPGALKQGGIPLVSCCIAAAEQAS---VPITVHFDHGTSKHELLEALELGF 1193 (1378)
T ss_pred HHHHHHHHHHHHhCCCEEEECCccHHhhcCHHHHHHHHHHHHHCC---CCEEEECCCCCCHHHHHHHHHhCC
Confidence 67788999999999999986654211 133 3334443 236666222 26889999999874
No 305
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=29.76 E-value=1.4e+02 Score=26.53 Aligned_cols=79 Identities=19% Similarity=0.226 Sum_probs=49.1
Q ss_pred HHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccch-----HHH-HHHHHHhcCCC
Q 025333 19 FSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRA-----FGD-LLEIMKSVGPF 92 (254)
Q Consensus 19 l~~l~~ll~~~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a-----~~~-~l~il~~~~~~ 92 (254)
.+++.+++....++.|| +|+-. +.+.+.+...++.|+++++||++--+.. ..+ ..++++...
T Consensus 45 ~~e~~~~~~~~~alvi~-~G~l~---------~~~~~~i~~~~~~a~~~~~pvVlDpv~~~~~~~~~~~~~~ll~~~~-- 112 (263)
T PRK09355 45 PEEAEEMAKIAGALVIN-IGTLT---------EERIEAMLAAGKIANEAGKPVVLDPVGVGATSYRTEFALELLAEVK-- 112 (263)
T ss_pred HHHHHHHHHhcCceEEe-CCCCC---------HHHHHHHHHHHHHHHhcCCCEEECCcccCcchhhHHHHHHHHHhcC--
Confidence 45666666666677775 77652 2466677788888999999999987641 122 223443221
Q ss_pred CCcEEEEeCCCCHHHHHHHHHC
Q 025333 93 PDGVIIHSYLGSAEMVPELSKL 114 (254)
Q Consensus 93 ~~~~IiH~fsg~~e~~~~~l~~ 114 (254)
. -..+++..++..+.+.
T Consensus 113 -~----~vItPN~~E~~~L~g~ 129 (263)
T PRK09355 113 -P----AVIRGNASEIAALAGE 129 (263)
T ss_pred -C----cEecCCHHHHHHHhCC
Confidence 1 2246777788877653
No 306
>PF02669 KdpC: K+-transporting ATPase, c chain; InterPro: IPR003820 Kdp, the high affinity ATP-driven K+-transport system of Escherichia coli, is a complex of the membrane-bound subunits KdpA, KdpB, KdpC and the small peptide KdpF. KdpC forms strong interactions with the KdpA subunit, serving to assemble and stabilise the Kdp complex []. It has been suggested that KdpC could be one of the connecting links between the energy providing subunit KdpB and the K+- transporting subunit KdpA []. The K+ transport system actively transports K+ ions via ATP hydrolysis.; GO: 0008556 potassium-transporting ATPase activity, 0006813 potassium ion transport, 0016020 membrane
Probab=29.76 E-value=52 Score=28.24 Aligned_cols=36 Identities=22% Similarity=0.287 Sum_probs=28.4
Q ss_pred cccHHHHHHHHHhccCCCHHHHHHHHHHHHHH-hcCC
Q 025333 210 PANIHNVLDYVASLLDMTKEELAELSYRNAIR-LFSY 245 (254)
Q Consensus 210 P~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~-~f~~ 245 (254)
|.....=+..||+.+|+++++|.+.+.+|..+ .||+
T Consensus 134 ~~aA~~Qv~RVA~argl~~~~v~~li~~~t~~~~lG~ 170 (188)
T PF02669_consen 134 PAAALIQVPRVAKARGLSEEEVEALIDKHTEGPLLGF 170 (188)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHhcCCCccc
Confidence 44555556789999999999999999999875 3444
No 307
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=29.24 E-value=4.1e+02 Score=24.60 Aligned_cols=98 Identities=15% Similarity=0.130 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHh-cCCceEEeccch-------------------HHHHHHHHHhcCCCCCcEEEEeCCCC---HHHHHH
Q 025333 54 VGVFRQQLELAKE-LKRPASIHCVRA-------------------FGDLLEIMKSVGPFPDGVIIHSYLGS---AEMVPE 110 (254)
Q Consensus 54 ~~vf~~ql~lA~~-~~lPvilH~~~a-------------------~~~~l~il~~~~~~~~~~IiH~fsg~---~e~~~~ 110 (254)
.+.+...+..|.+ ...++.+|.-.. .+.++..|.+... ..+..=|... .+.++.
T Consensus 188 ~~~~v~~~n~~~~g~~~~v~~HvC~G~~~~~~~~~~~~~~~~~g~y~~i~~~l~~~~v---d~~~lE~~~~r~~~~~l~~ 264 (339)
T PRK09121 188 NDWGVAALERAIEGLKCETAVHICYGYGIKANTDWKKTLGSEWRQYEEAFPKLQKSNI---DIISLECHNSRVPMDLLEL 264 (339)
T ss_pred HHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccccccccccccccHHHHHHHHHhCCC---CEEEEEecCCCCCcHHHHh
Confidence 4455555555544 456788897732 2467777765542 2344444322 234444
Q ss_pred HHHCCcEEeec----ccccccc--hHHHHHHHHhCCCCcEEEecCCCCCC
Q 025333 111 LSKLGAYFSFS----GFLMSMK--AQKAKKMLKVVPSERILLETDAPDAL 154 (254)
Q Consensus 111 ~l~~G~y~s~~----~~~~~~~--~~~~~~~l~~ip~driLlETD~P~~~ 154 (254)
+.+..+.+|+- +.+-... ..+++++++.+|++||.+-+||.+..
T Consensus 265 ~~~~~v~lGvvd~k~~~lE~~e~I~~rI~~a~~~v~~~~l~lspdCGf~~ 314 (339)
T PRK09121 265 IRGKKVMVGAIDVASDTIETPEEVADTLRKALQFVDADKLYPCTNCGMAP 314 (339)
T ss_pred cccCeEEeeeEeCCCCCCCCHHHHHHHHHHHHHhCCHHHEEECCCCCCCc
Confidence 42222333321 1111110 13467788889999999999999853
No 308
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=29.18 E-value=4.7e+02 Score=24.23 Aligned_cols=138 Identities=14% Similarity=0.123 Sum_probs=63.5
Q ss_pred cCChhHHHHHHHHhhcCCceEEEeec----C---CCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccc--hHHHHH
Q 025333 13 ERTPNWFSTLKEFFEITPAAAVGEIG----L---DKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVR--AFGDLL 83 (254)
Q Consensus 13 ~~~~~~l~~l~~ll~~~~~~aIGEiG----L---D~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~--a~~~~l 83 (254)
..+.+....+.+.+.+..+-.| |+| | .+.. + .....+.+.+++..+... +..+...+.. +..+-+
T Consensus 20 ~f~~~~~~~ia~~Ld~aGV~~I-Evg~g~gl~g~s~~~-G--~~~~~~~e~i~~~~~~~~--~~~~~~ll~pg~~~~~dl 93 (333)
T TIGR03217 20 QFTIEQVRAIAAALDEAGVDAI-EVTHGDGLGGSSFNY-G--FSAHTDLEYIEAAADVVK--RAKVAVLLLPGIGTVHDL 93 (333)
T ss_pred cCCHHHHHHHHHHHHHcCCCEE-EEecCCCCCCccccC-C--CCCCChHHHHHHHHHhCC--CCEEEEEeccCccCHHHH
Confidence 3455666666666766667666 885 2 1111 0 111224455555554433 2334333321 222334
Q ss_pred HHHHhcCCCCCcEEEEeCCC--CHHHHHHHHHCCcEEeeccccccc-chHHHH---HHHHhCCCCcEEEecCCCCCCch
Q 025333 84 EIMKSVGPFPDGVIIHSYLG--SAEMVPELSKLGAYFSFSGFLMSM-KAQKAK---KMLKVVPSERILLETDAPDALPK 156 (254)
Q Consensus 84 ~il~~~~~~~~~~IiH~fsg--~~e~~~~~l~~G~y~s~~~~~~~~-~~~~~~---~~l~~ip~driLlETD~P~~~p~ 156 (254)
+...+.+....++.+|+-.. ..+.++.+.+.|+.+.++....+. ..+.+. +.+...+.++|-+-==.-.+.|.
T Consensus 94 ~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~ 172 (333)
T TIGR03217 94 KAAYDAGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYIVDSAGAMLPD 172 (333)
T ss_pred HHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEEccCCCCCCHH
Confidence 55555555434555566421 122333334567766555432222 223333 34445677877553333344443
No 309
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=29.02 E-value=1.1e+02 Score=24.43 Aligned_cols=70 Identities=20% Similarity=0.233 Sum_probs=42.1
Q ss_pred hhHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhc-CCceEEeccch-HHHHHHHHHh
Q 025333 16 PNWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKEL-KRPASIHCVRA-FGDLLEIMKS 88 (254)
Q Consensus 16 ~~~l~~l~~ll~~~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~-~lPvilH~~~a-~~~~l~il~~ 88 (254)
...++.|.+++++.++..| =|||+....+.......+.+-|.+ +++..+ ++||.+--.+- ..+..++|++
T Consensus 37 ~~~~~~l~~li~~~~i~~i-VvGlP~~~~G~~~~~~~~v~~f~~--~L~~~~~~ipV~~~DEr~TT~~A~~~l~~ 108 (135)
T PF03652_consen 37 EKDIEELKKLIEEYQIDGI-VVGLPLNMDGSESEQARRVRKFAE--ELKKRFPGIPVILVDERLTTKEAERRLRE 108 (135)
T ss_dssp CCCHHHHHHHHHHCCECEE-EEEEEBBCTSSC-CCHHHHHHHHH--HHHHHH-TSEEEEEECSCSHHCCHCCHHH
T ss_pred chHHHHHHHHHHHhCCCEE-EEeCCcccCCCccHHHHHHHHHHH--HHHHhcCCCcEEEECCChhHHHHHHHHHH
Confidence 4678899999988765433 288988765544444444444444 445566 99988877763 3333344443
No 310
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=29.02 E-value=2.9e+02 Score=26.02 Aligned_cols=23 Identities=30% Similarity=0.276 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhcCCceEEeccc
Q 025333 55 GVFRQQLELAKELKRPASIHCVR 77 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~ 77 (254)
+..+..++.|.+.+.||+|-.-.
T Consensus 32 e~~~avi~AAee~~sPVIlq~s~ 54 (350)
T PRK09197 32 DSINAVLEGAAEAKSPVIIQFSN 54 (350)
T ss_pred HHHHHHHHHHHHHCCCEEEEcCh
Confidence 67888999999999999987643
No 311
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=28.88 E-value=3.8e+02 Score=23.11 Aligned_cols=27 Identities=15% Similarity=0.121 Sum_probs=22.9
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHhcCC
Q 025333 219 YVASLLDMTKEELAELSYRNAIRLFSY 245 (254)
Q Consensus 219 ~lA~i~~~~~eev~~~~~~N~~~~f~~ 245 (254)
.+++..|++.+++.+.+..|..+++..
T Consensus 190 ~l~~~~Gl~~~~~~~~~~~~~~~i~~~ 216 (237)
T PRK00912 190 ALAELFGMEEDEALKALSYYPESIIKK 216 (237)
T ss_pred HHHHHcCCCHHHHHHHHHHhHHHHHHh
Confidence 456778999999999999999888754
No 312
>TIGR03191 benz_CoA_bzdO benzoyl-CoA reductase, bzd-type, O subunit. Members of this family are the O subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=28.82 E-value=1.3e+02 Score=28.87 Aligned_cols=67 Identities=18% Similarity=0.185 Sum_probs=43.2
Q ss_pred hcCCceEEeccc---hHHHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCcEEeecccccccchHHHHHHHHhCCCC
Q 025333 66 ELKRPASIHCVR---AFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQKAKKMLKVVPSE 142 (254)
Q Consensus 66 ~~~lPvilH~~~---a~~~~l~il~~~~~~~~~~IiH~fsg~~e~~~~~l~~G~y~s~~~~~~~~~~~~~~~~l~~ip~d 142 (254)
...+|++.|..+ ..+.+.++++++.. .++|.|...| |-..-.+ ...+++.+++.+..
T Consensus 334 ~~~~~~~~~~~~~~~R~~~l~~li~e~~v--DGVI~~~~~~------------C~~~s~e------~~~ik~~l~~~GIP 393 (430)
T TIGR03191 334 NLSKPLWQHFFDPRIKSEMMLNIARDWNV--DGCMLHLNRG------------CEGLSIG------IMENRLAIAKAGIP 393 (430)
T ss_pred CcccchhccCCChhHHHHHHHHHHHHHCC--CEEEEcCCCC------------CccchHh------HHHHHHHHHHcCCC
Confidence 346777777765 35567788888865 4566676533 3221111 23456667778899
Q ss_pred cEEEecCCCC
Q 025333 143 RILLETDAPD 152 (254)
Q Consensus 143 riLlETD~P~ 152 (254)
-+.||||+-+
T Consensus 394 ~L~ietD~~d 403 (430)
T TIGR03191 394 IMTFEGNMGD 403 (430)
T ss_pred EEEEECCCCC
Confidence 9999999754
No 313
>PRK06233 hypothetical protein; Provisional
Probab=28.71 E-value=2.8e+02 Score=26.01 Aligned_cols=83 Identities=16% Similarity=0.189 Sum_probs=47.8
Q ss_pred CCceEEeccch-----------HHHHHHHHHhcCCCCCcEEEEeC----CCCHHHHHHHHH----CCcEEeec----ccc
Q 025333 68 KRPASIHCVRA-----------FGDLLEIMKSVGPFPDGVIIHSY----LGSAEMVPELSK----LGAYFSFS----GFL 124 (254)
Q Consensus 68 ~lPvilH~~~a-----------~~~~l~il~~~~~~~~~~IiH~f----sg~~e~~~~~l~----~G~y~s~~----~~~ 124 (254)
++.|.+|.... .+.++..|.+.+. . .+..=| .|..+.++.+.. ..+.+|+- +.+
T Consensus 236 d~~i~~H~C~Gn~~~~~~~~g~y~~i~~~l~~~~v--d-~~~lE~~~~r~~~~~~L~~~~~~~~~k~v~lGvid~~~~~v 312 (372)
T PRK06233 236 DLTVTTHICRGNFKSTYLFSGGYEPVAKYLGQLNY--D-GFFLEYDNDRSGSFEPLKQIWNNRDNVRIVLGLITSKFPEL 312 (372)
T ss_pred CCEEEEEeeCCCCCCcccccCcHHHHHHHHHhCCC--C-EEEEecCCCccCccchHHHhhccCCCCEEEeeeecCCCCCC
Confidence 55678897753 5678888866543 2 233333 244455555532 22333321 111
Q ss_pred cccc--hHHHHHHHHhCCCCcEEEecCCCCC
Q 025333 125 MSMK--AQKAKKMLKVVPSERILLETDAPDA 153 (254)
Q Consensus 125 ~~~~--~~~~~~~l~~ip~driLlETD~P~~ 153 (254)
-... ..+++++++-+|++||.+-+||.+.
T Consensus 313 E~~e~I~~rI~~a~~~v~~e~l~lspdCGf~ 343 (372)
T PRK06233 313 EDEDEIIARIDEATEYVPLSNLALSTQCGFA 343 (372)
T ss_pred CCHHHHHHHHHHHHHhCCHHHEEecCCCCCc
Confidence 1110 2346778888999999999999885
No 314
>PRK01207 methionine synthase; Provisional
Probab=28.70 E-value=4.9e+02 Score=24.38 Aligned_cols=100 Identities=11% Similarity=0.135 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHh-cCCceEEecc-c-hHHHHHHHHHhcCCCCCcEEEEeCCCC--------------HHHHHHHHHC
Q 025333 52 DQVGVFRQQLELAKE-LKRPASIHCV-R-AFGDLLEIMKSVGPFPDGVIIHSYLGS--------------AEMVPELSKL 114 (254)
Q Consensus 52 ~Q~~vf~~ql~lA~~-~~lPvilH~~-~-a~~~~l~il~~~~~~~~~~IiH~fsg~--------------~e~~~~~l~~ 114 (254)
...+++...+..+.+ .+.++.+|.- . ...++++.+.+... .++-.=|+.+ .+.++.+.+.
T Consensus 188 ~~l~~av~a~n~~~~gv~~~i~~H~C~g~~~~~i~~~i~~~~~---d~~~~E~a~~~~~~~~~~~~~r~~~~~l~~~~~~ 264 (343)
T PRK01207 188 DEMDIVVDSINKSVYGIDNEFSIHVCYSSDYRLLYDRIPELNI---DGYNLEYSNRDTLEPGTSDEKRPGFQDLKYFAEH 264 (343)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEEcCCChHHHHHHHHhCCC---CEEEEEeccCcccccccccccccchhHHHHHHhh
Confidence 344555566666554 4567888877 3 47778877776643 2232223211 1233334222
Q ss_pred ------CcEEeeccc-cccc---c----hHHHHHHHHhC-CCCcEEEecCCCCCC
Q 025333 115 ------GAYFSFSGF-LMSM---K----AQKAKKMLKVV-PSERILLETDAPDAL 154 (254)
Q Consensus 115 ------G~y~s~~~~-~~~~---~----~~~~~~~l~~i-p~driLlETD~P~~~ 154 (254)
+..++++-. +.+. . .+.++++++.+ |.+||.+.+||.+..
T Consensus 265 ~~~l~~~~~Ig~GV~D~~s~~vEs~e~I~~ri~~~l~~v~~~e~l~vnpDCGl~t 319 (343)
T PRK01207 265 NESLQRKKFIGLGVTDVHIDYVEPVKLIEDRIRYALKIIKDPELVRLNPDCGLRT 319 (343)
T ss_pred ccccCCCCeEEeeEEeCCCCCCCCHHHHHHHHHHHHHhcCCcceEEEcCCCCCCc
Confidence 222443321 1111 1 23467788888 899999999998754
No 315
>COG2156 KdpC K+-transporting ATPase, c chain [Inorganic ion transport and metabolism]
Probab=28.34 E-value=56 Score=28.03 Aligned_cols=42 Identities=19% Similarity=0.234 Sum_probs=32.9
Q ss_pred cccHHHHHHHHHhccCCCHHHHHHHHHHHHHH----hcCCCCCccc
Q 025333 210 PANIHNVLDYVASLLDMTKEELAELSYRNAIR----LFSYEGSKIL 251 (254)
Q Consensus 210 P~~l~~v~~~lA~i~~~~~eev~~~~~~N~~~----~f~~~~~~~~ 251 (254)
|..-..=+..||+.+|++++.|.+.+.++..+ |||-+..++|
T Consensus 136 p~aA~~QvpRVA~argi~~~~v~~lI~~~t~~~~lg~~Gep~VNVL 181 (190)
T COG2156 136 PAAAAYQVPRVAKARGISEEQVKQLIDEHTQGRLLGFFGEPVVNVL 181 (190)
T ss_pred HHHHHHHhHHHHHHhCCCHHHHHHHHHHhccCccccccCCceeeee
Confidence 44555556689999999999999999999887 6666666665
No 316
>PRK06846 putative deaminase; Validated
Probab=28.28 E-value=5e+02 Score=24.30 Aligned_cols=65 Identities=17% Similarity=0.146 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhcC---CceEEeccc----hHHH---HHHHHHhcCCCCCcEEEEeCC--CCHHHHHHHHHCCcEEeecc
Q 025333 55 GVFRQQLELAKELK---RPASIHCVR----AFGD---LLEIMKSVGPFPDGVIIHSYL--GSAEMVPELSKLGAYFSFSG 122 (254)
Q Consensus 55 ~vf~~ql~lA~~~~---lPvilH~~~----a~~~---~l~il~~~~~~~~~~IiH~fs--g~~e~~~~~l~~G~y~s~~~ 122 (254)
..+++.+++..+++ .....||.. ..++ +++++++.+. .|.|+.. ...--++.+++.|+-++++.
T Consensus 235 ~~~~~~~~~~~~~gl~~~v~~~H~~~l~~~~~~e~~~li~~la~~g~----~v~~~~~~~~g~~p~~~l~~~Gv~v~lGt 310 (410)
T PRK06846 235 ATIKYLVETTEEAQWKGKVTISHAFALGDLNEEEVEELAERLAAQGI----SITSTVPIGRLHMPIPLLHDKGVKVSLGT 310 (410)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEecchhhcCCHHHHHHHHHHHHHcCC----eEEEeCCCCCCCCCHHHHHhCCCeEEEec
Confidence 44456677777766 456789984 2333 4556777653 3556542 12345678888999888886
Q ss_pred c
Q 025333 123 F 123 (254)
Q Consensus 123 ~ 123 (254)
.
T Consensus 311 D 311 (410)
T PRK06846 311 D 311 (410)
T ss_pred C
Confidence 4
No 317
>PRK09229 N-formimino-L-glutamate deiminase; Validated
Probab=28.27 E-value=4.8e+02 Score=24.86 Aligned_cols=50 Identities=10% Similarity=-0.045 Sum_probs=36.2
Q ss_pred ceEEeccchHHHHHHHHHhcCCCCCcEEEEeCCCC------HHHHHHHHHCCcEEeeccc
Q 025333 70 PASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGS------AEMVPELSKLGAYFSFSGF 123 (254)
Q Consensus 70 PvilH~~~a~~~~l~il~~~~~~~~~~IiH~fsg~------~e~~~~~l~~G~y~s~~~~ 123 (254)
-++.||....++-++++++.+. .+.||-+.+ ..-++++++.|+-++++..
T Consensus 267 ~~l~H~~~l~~~d~~~la~~g~----~v~~~P~sn~~lg~g~~p~~~l~~~Gv~v~lGtD 322 (456)
T PRK09229 267 WCLVHATHLTDAETARLARSGA----VAGLCPTTEANLGDGIFPAVDYLAAGGRFGIGSD 322 (456)
T ss_pred eEEEeeccCCHHHHHHHHHcCC----eEEECchhhhhhcCCCCCHHHHHHCCCeEEEecC
Confidence 3778999988888889988763 456764321 2345788889999998864
No 318
>COG1229 FwdA Formylmethanofuran dehydrogenase subunit A [Energy production and conversion]
Probab=28.24 E-value=98 Score=30.10 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=22.9
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCCCc
Q 025333 224 LDMTKEELAELSYRNAIRLFSYEGSK 249 (254)
Q Consensus 224 ~~~~~eev~~~~~~N~~~~f~~~~~~ 249 (254)
+..+..|++..|+.|..++++++.+|
T Consensus 436 rE~t~~eia~~TRa~~ak~lgl~e~k 461 (575)
T COG1229 436 RELTLYELAIMTRANPAKVLGLSERK 461 (575)
T ss_pred ccccHHHHHHHHhcChhhhccccccc
Confidence 56788999999999999999998754
No 319
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=27.92 E-value=1.8e+02 Score=27.00 Aligned_cols=47 Identities=6% Similarity=0.057 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhcCCceEEeccch---HHHHHHHHHhcCCCCCcEEEEeCC
Q 025333 56 VFRQQLELAKELKRPASIHCVRA---FGDLLEIMKSVGPFPDGVIIHSYL 102 (254)
Q Consensus 56 vf~~ql~lA~~~~lPvilH~~~a---~~~~l~il~~~~~~~~~~IiH~fs 102 (254)
-|++.+.+|.++|.||+.=+.+. ...+...+.++|..+.++++...+
T Consensus 163 n~~~i~~lA~~y~~~Vva~s~~Dln~ak~L~~~l~~~Gi~~edIviDP~~ 212 (319)
T PRK04452 163 NYKKIAAAAMAYGHAVIAWSPLDINLAKQLNILLTELGVPRERIVMDPTT 212 (319)
T ss_pred HHHHHHHHHHHhCCeEEEEcHHHHHHHHHHHHHHHHcCCCHHHEEEeCCc
Confidence 38888888888888888777543 334455566677655667765443
No 320
>TIGR01048 lysA diaminopimelate decarboxylase. This family consists of diaminopimelate decarboxylase, an enzyme which catalyzes the conversion of diaminopimelic acid into lysine during the last step of lysine biosynthesis.
Probab=27.78 E-value=4.8e+02 Score=24.39 Aligned_cols=59 Identities=20% Similarity=0.173 Sum_probs=29.7
Q ss_pred HHHHHhcCCceEEeccchHHHHHHHHHhcCCC-CCcEEEE--eCCCCHHHHHHHHHCCcEEee
Q 025333 61 LELAKELKRPASIHCVRAFGDLLEIMKSVGPF-PDGVIIH--SYLGSAEMVPELSKLGAYFSF 120 (254)
Q Consensus 61 l~lA~~~~lPvilH~~~a~~~~l~il~~~~~~-~~~~IiH--~fsg~~e~~~~~l~~G~y~s~ 120 (254)
.+++++++-|+.+-..+...+-++.+++.-+. ..++..+ +. .....++.+.+.|+.|.+
T Consensus 17 ~~l~~~~~tP~~v~d~~~l~~n~~~l~~~~~~~~~~i~yavKaN-~~~~vl~~l~~~G~g~dv 78 (417)
T TIGR01048 17 LELAEEFGTPLYVYDEETIRERFRAYKEAFGGAYSLVCYAVKAN-SNLALLRLLAELGSGFDV 78 (417)
T ss_pred HHHHHhhCCCEEEEeHHHHHHHHHHHHHhhCCCCceEEEEehhC-CCHHHHHHHHHcCCcEEE
Confidence 35566677777766666655555555443211 1122222 22 245555666666654443
No 321
>COG3737 Uncharacterized conserved protein [Function unknown]
Probab=27.65 E-value=68 Score=25.62 Aligned_cols=38 Identities=16% Similarity=-0.045 Sum_probs=25.9
Q ss_pred eccccccccC---ChhHHHHHHHHhhcCCceEEEeecCCCCC
Q 025333 5 CFIFRFVQER---TPNWFSTLKEFFEITPAAAVGEIGLDKGS 43 (254)
Q Consensus 5 G~HP~~~~~~---~~~~l~~l~~ll~~~~~~aIGEiGLD~~~ 43 (254)
|+|+|.+... +.+.++.+-+......++.|| +|.+..+
T Consensus 43 gv~~W~v~~~~~Lt~e~f~~vl~~a~~~EilliG-TG~~~rf 83 (127)
T COG3737 43 GVCDWEVATLSDLTPEDFERVLAEAPDVEILLIG-TGARLRF 83 (127)
T ss_pred ccccccccChhhCCHHHHHHHHhcCCCceEEEEe-cCccccC
Confidence 5788888654 455555555555555688888 8988765
No 322
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=27.40 E-value=4.8e+02 Score=23.82 Aligned_cols=125 Identities=15% Similarity=0.142 Sum_probs=70.7
Q ss_pred hHHHHHHHHhhc--CCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccch-HHHHHHHHHhcCCCC
Q 025333 17 NWFSTLKEFFEI--TPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRA-FGDLLEIMKSVGPFP 93 (254)
Q Consensus 17 ~~l~~l~~ll~~--~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a-~~~~l~il~~~~~~~ 93 (254)
+.++.|++.+.+ .+..-| .+|=+-. ...+.+...++-++.+++..+++.||+|++..+ ...-+++|.+....
T Consensus 67 n~~e~l~~el~~~~~k~~~i-~is~~TD---pyqp~E~~~~ltR~ilei~~~~~~~v~I~TKS~lv~RDld~l~~~~~~- 141 (297)
T COG1533 67 NLLELLERELRKPGPKRTVI-AISSVTD---PYQPIEKEYRLTRKILEILLKYGFPVSIVTKSALVLRDLDLLLELAER- 141 (297)
T ss_pred hHHHHHHHHHhhccCCceEE-EEecCCC---CCCcchHHHHHHHHHHHHHHHcCCcEEEEECCcchhhhHHHHHhhhhc-
Confidence 467788777753 232222 2333322 123678899999999999999999999999986 22334444433221
Q ss_pred CcEEEE-e-CCCC-----------------HHHHHHHHHCC--cEEeecccccccchHHHHHHHH---hCCCCcEEE
Q 025333 94 DGVIIH-S-YLGS-----------------AEMVPELSKLG--AYFSFSGFLMSMKAQKAKKMLK---VVPSERILL 146 (254)
Q Consensus 94 ~~~IiH-~-fsg~-----------------~e~~~~~l~~G--~y~s~~~~~~~~~~~~~~~~l~---~ip~driLl 146 (254)
..+.++ + -+.+ .+.++.+.+.| +++.+++.+.+.+.+++.+++. ..+...+..
T Consensus 142 ~~v~V~~Sitt~d~~l~k~~EP~apsp~~Ri~al~~l~eaGi~~~v~v~PIiP~~~d~e~e~~l~~~~~ag~~~v~~ 218 (297)
T COG1533 142 GKVRVAVSITTLDEELAKILEPRAPSPEERLEALKELSEAGIPVGLFVAPIIPGLNDEELERILEAAAEAGARVVVY 218 (297)
T ss_pred cceEEEEEeecCcHHHHHhcCCCCcCHHHHHHHHHHHHHCCCeEEEEEecccCCCChHHHHHHHHHHHHcCCCeeEe
Confidence 112222 1 1111 22334445566 5777888776655555555444 344444443
No 323
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=27.37 E-value=78 Score=22.37 Aligned_cols=31 Identities=13% Similarity=0.197 Sum_probs=22.3
Q ss_pred HHHHHHHHHhcCCceEEeccchHHHHHHHHH
Q 025333 57 FRQQLELAKELKRPASIHCVRAFGDLLEIMK 87 (254)
Q Consensus 57 f~~ql~lA~~~~lPvilH~~~a~~~~l~il~ 87 (254)
|++.++.|++-++||+|.....+-.--..++
T Consensus 6 ~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~ 36 (82)
T PF13899_consen 6 YEEALAEAKKEGKPVLVDFGADWCPPCKKLE 36 (82)
T ss_dssp HHHHHHHHHHHTSEEEEEEETTTTHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEECCCCHhHHHHH
Confidence 6788999999999999888754433333333
No 324
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=27.19 E-value=6.5e+02 Score=25.33 Aligned_cols=59 Identities=20% Similarity=0.242 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhcCCceEEeccc------hHHHHHHHHHhcCCCCCcEEEEeCCCCH--------HHHHHHHHCCc
Q 025333 55 GVFRQQLELAKELKRPASIHCVR------AFGDLLEIMKSVGPFPDGVIIHSYLGSA--------EMVPELSKLGA 116 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~------a~~~~l~il~~~~~~~~~~IiH~fsg~~--------e~~~~~l~~G~ 116 (254)
.+.+..++.|.+.|.-+ ++... .....++..++.|.. ..+.+ ||++++ +.++++.+.|+
T Consensus 91 dvv~~~v~~a~~~Gvd~-irif~~lnd~~n~~~~i~~ak~~G~~-v~~~i-~~t~~p~~~~~~~~~~~~~~~~~Ga 163 (582)
T TIGR01108 91 DVVERFVKKAVENGMDV-FRIFDALNDPRNLQAAIQAAKKHGAH-AQGTI-SYTTSPVHTLETYLDLAEELLEMGV 163 (582)
T ss_pred hhHHHHHHHHHHCCCCE-EEEEEecCcHHHHHHHHHHHHHcCCE-EEEEE-EeccCCCCCHHHHHHHHHHHHHcCC
Confidence 56677788888888764 33332 233445566666531 11111 454443 44556666774
No 325
>PF14297 DUF4373: Domain of unknown function (DUF4373)
Probab=27.09 E-value=77 Score=23.15 Aligned_cols=35 Identities=31% Similarity=0.344 Sum_probs=29.4
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHHhcCCCCCccccc
Q 025333 217 LDYVASLLDMTKEELAELSYRNAIRLFSYEGSKILTE 253 (254)
Q Consensus 217 ~~~lA~i~~~~~eev~~~~~~N~~~~f~~~~~~~~~~ 253 (254)
+..+|+..+++.+.|.+++. +. .+|.....+|+|-
T Consensus 49 ~~~~a~~~~~~~~~v~~II~-~~-~LF~~~~~~iltS 83 (87)
T PF14297_consen 49 LFLIARKLGVSEEYVEEIIN-EY-GLFDIEEYGILTS 83 (87)
T ss_pred HHHHHHHHCcCHHHHHHHHH-Hh-CCcccCCCcEEec
Confidence 57788888999999999998 44 7999887888874
No 326
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=26.97 E-value=4.7e+02 Score=23.87 Aligned_cols=107 Identities=10% Similarity=-0.016 Sum_probs=60.1
Q ss_pred eccc----cccccCChhHHHHHHHHhhcCCceEEEeecCCCCCCC---CCCCHHHHHHHHHHHHHHHHhcCCc----eEE
Q 025333 5 CFIF----RFVQERTPNWFSTLKEFFEITPAAAVGEIGLDKGSKG---REIDFMDQVGVFRQQLELAKELKRP----ASI 73 (254)
Q Consensus 5 G~HP----~~~~~~~~~~l~~l~~ll~~~~~~aIGEiGLD~~~~~---~~~~~~~Q~~vf~~ql~lA~~~~lP----vil 73 (254)
+-|| |.......+.++.+.+++++..+...-= =+|+..- .+...+.-.+.+...+++|..+|.+ |+|
T Consensus 75 ~~h~~~~~w~~~~~~~~~~~~~g~~~~~~~irls~H--p~y~inL~S~~~ev~e~Si~~L~~~~~~~~~lG~~~~~~vVi 152 (303)
T PRK02308 75 ATHPELEGWDYIEPFKEELREIGEFIKEHNIRLSFH--PDQFVVLNSPKPEVVENSIKDLEYHAKLLDLMGIDDSSKINI 152 (303)
T ss_pred CCChhhcccCCCCCCHHHHHHHHHHHHHcCCCeecc--ChhhhcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Confidence 4566 4444556677888888887653311111 1222211 1122456688999999999999999 889
Q ss_pred eccch-------HHHHHHHHHhcCC-CCCcEEEE--eCCCCHHHHHHHHH
Q 025333 74 HCVRA-------FGDLLEIMKSVGP-FPDGVIIH--SYLGSAEMVPELSK 113 (254)
Q Consensus 74 H~~~a-------~~~~l~il~~~~~-~~~~~IiH--~fsg~~e~~~~~l~ 113 (254)
|.... .+.+.+.+++... ...++++= .-.++.+.+..+.+
T Consensus 153 HpG~~~~~ke~al~r~~~~l~~l~~~~~~~L~LEN~~~~~t~~ell~I~e 202 (303)
T PRK02308 153 HVGGAYGDKEKALERFIENIKKLPESIKKRLTLENDDKTYTVEELLYICE 202 (303)
T ss_pred CCCccCCCHHHHHHHHHHHHHHhhHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 98763 3334444433211 12334442 11256666666655
No 327
>PF13684 Dak1_2: Dihydroxyacetone kinase family
Probab=26.84 E-value=5e+02 Score=23.80 Aligned_cols=92 Identities=15% Similarity=0.144 Sum_probs=60.5
Q ss_pred HHHHHHhcCCceEEeccchHHHHHHHHH------h-cCCCCCcEEEEeCCCCHHHHHHHHHCCcEEeeccccc-ccchHH
Q 025333 60 QLELAKELKRPASIHCVRAFGDLLEIMK------S-VGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLM-SMKAQK 131 (254)
Q Consensus 60 ql~lA~~~~lPvilH~~~a~~~~l~il~------~-~~~~~~~~IiH~fsg~~e~~~~~l~~G~y~s~~~~~~-~~~~~~ 131 (254)
.|+.|.++|...-|+..+....--+.++ . ..+.....++..-.|. -..+.+.+.|+..-+.|.-+ .++.+.
T Consensus 55 vle~~~~~G~l~~ikIenM~~q~~~~~~~~~~~~~~~~~~~~~~vVAv~~g~-g~~~lf~~~Gv~~vi~ggqt~nPS~~d 133 (313)
T PF13684_consen 55 VLEYALKYGELSKIKIENMREQHEERLKDEDSAADLPKPEKDRGVVAVAPGE-GLAELFRSLGVDVVISGGQTMNPSTED 133 (313)
T ss_pred HHHHHHhcCcEEEEEEecCchhhhhhhcccccccccccccCCeEEEEEecCc-cHHHHHHhCCCeEEEeCCCCCCCCHHH
Confidence 5788889999999999886555444442 0 1111123566655543 34666777897666665433 455678
Q ss_pred HHHHHHhCCCCcEEEecCCCC
Q 025333 132 AKKMLKVVPSERILLETDAPD 152 (254)
Q Consensus 132 ~~~~l~~ip~driLlETD~P~ 152 (254)
+.+++.+++.+++++=.+..-
T Consensus 134 l~~Ai~~~~a~~VivLPNn~n 154 (313)
T PF13684_consen 134 LLNAIEKVGADEVIVLPNNKN 154 (313)
T ss_pred HHHHHHhCCCCeEEEEeCCch
Confidence 889999999999998665543
No 328
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=26.56 E-value=74 Score=19.25 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=16.1
Q ss_pred HHHHhccCCCHHHHHHHHHH
Q 025333 218 DYVASLLDMTKEELAELSYR 237 (254)
Q Consensus 218 ~~lA~i~~~~~eev~~~~~~ 237 (254)
+.||...|++.|.|.+++.+
T Consensus 6 ~diA~~lG~t~ETVSR~l~~ 25 (32)
T PF00325_consen 6 QDIADYLGLTRETVSRILKK 25 (32)
T ss_dssp HHHHHHHTS-HHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHHHH
Confidence 67888899999999998754
No 329
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=26.49 E-value=2.7e+02 Score=25.94 Aligned_cols=30 Identities=30% Similarity=0.234 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCceEEeccc
Q 025333 48 IDFMDQVGVFRQQLELAKELKRPASIHCVR 77 (254)
Q Consensus 48 ~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~ 77 (254)
...+.|.+.|...+++|++.+.=++||..+
T Consensus 20 ~r~~d~~~~f~~~l~~a~~~~vD~vliAGD 49 (390)
T COG0420 20 SRLEDQKKAFDELLEIAKEEKVDFVLIAGD 49 (390)
T ss_pred cchHHHHHHHHHHHHHHHHccCCEEEEccc
Confidence 345778888888888888888888888886
No 330
>COG1603 RPP1 RNase P/RNase MRP subunit p30 [Translation, ribosomal structure and biogenesis]
Probab=26.16 E-value=1.3e+02 Score=26.71 Aligned_cols=28 Identities=18% Similarity=0.242 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCceEEeccc
Q 025333 50 FMDQVGVFRQQLELAKELKRPASIHCVR 77 (254)
Q Consensus 50 ~~~Q~~vf~~ql~lA~~~~lPvilH~~~ 77 (254)
...+...|+..++++++++.|++|=+.-
T Consensus 144 Ra~~l~~lr~~lrl~rk~~v~ivvtS~A 171 (229)
T COG1603 144 RARLLSFLRSLLRLARKYDVPIVVTSDA 171 (229)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEeCCC
Confidence 3479999999999999999999987763
No 331
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=26.06 E-value=2.8e+02 Score=24.35 Aligned_cols=56 Identities=13% Similarity=0.130 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhcCCceEEeccch----HHHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHH
Q 025333 56 VFRQQLELAKELKRPASIHCVRA----FGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSK 113 (254)
Q Consensus 56 vf~~ql~lA~~~~lPvilH~~~a----~~~~l~il~~~~~~~~~~IiH~fsg~~e~~~~~l~ 113 (254)
-|+..|+++...+..+.|..... .+.+++++++++....++++-+|+ .+.++.+.+
T Consensus 90 tL~evl~~~~~~~~~l~iEiK~~~~~~~~~v~~~l~~~~~~~~~v~v~SF~--~~~l~~~~~ 149 (258)
T cd08573 90 TLEEAVKECLENNLRMIFDVKSNSSKLVDALKNLFKKYPGLYDKAIVCSFN--PIVIYKVRK 149 (258)
T ss_pred CHHHHHHHHHhcCCEEEEEeCCCcHHHHHHHHHHHHHCCCccCCEEEEECC--HHHHHHHHH
Confidence 47777788877788899887753 356778888876234578999994 666766654
No 332
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=25.91 E-value=4.4e+02 Score=24.94 Aligned_cols=75 Identities=13% Similarity=-0.025 Sum_probs=41.6
Q ss_pred ceeecc-----cccccc-CChhHHHHHHHHhhcCCceEEE-eecCCCCC---CC--CCCCH---HHHHHHHHHHHHHHHh
Q 025333 2 DWVCFI-----FRFVQE-RTPNWFSTLKEFFEITPAAAVG-EIGLDKGS---KG--REIDF---MDQVGVFRQQLELAKE 66 (254)
Q Consensus 2 ~~~G~H-----P~~~~~-~~~~~l~~l~~ll~~~~~~aIG-EiGLD~~~---~~--~~~~~---~~Q~~vf~~ql~lA~~ 66 (254)
++|-+| |+.... ..+..++++.+.+++......+ -+++-... .+ ...+. +.-.+.+++.+++|.+
T Consensus 47 dgVE~~~~dl~P~~~~~~e~~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~~g~las~d~~vR~~ai~~~kraId~A~e 126 (382)
T TIGR02631 47 YGVTFHDDDLIPFGAPPQERDQIVRRFKKALDETGLKVPMVTTNLFSHPVFKDGGFTSNDRSVRRYALRKVLRNMDLGAE 126 (382)
T ss_pred CEEEecccccCCCCCChhHHHHHHHHHHHHHHHhCCeEEEeeccccCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 567777 443331 1133467888888876544222 23331110 00 01122 3345668999999999
Q ss_pred cCCc-eEEecc
Q 025333 67 LKRP-ASIHCV 76 (254)
Q Consensus 67 ~~lP-vilH~~ 76 (254)
+|.+ |++|..
T Consensus 127 LGa~~v~v~~G 137 (382)
T TIGR02631 127 LGAETYVVWGG 137 (382)
T ss_pred hCCCEEEEccC
Confidence 9998 667765
No 333
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=25.86 E-value=3.5e+02 Score=21.73 Aligned_cols=108 Identities=13% Similarity=0.126 Sum_probs=63.9
Q ss_pred hHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccchHHHHHHHHHhcCCCCCcE
Q 025333 17 NWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGV 96 (254)
Q Consensus 17 ~~l~~l~~ll~~~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a~~~~l~il~~~~~~~~~~ 96 (254)
+..+.++++++.+ +.+| -+|.. ..+...+.+.+++..+++..++.++++|.. +++..+.+. .
T Consensus 13 ~~~~~l~~l~~~g-~~~i---~lr~~----~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~------~~~a~~~g~--~-- 74 (196)
T cd00564 13 DLLEVVEAALKGG-VTLV---QLREK----DLSARELLELARALRELCRKYGVPLIINDR------VDLALAVGA--D-- 74 (196)
T ss_pred hHHHHHHHHHhcC-CCEE---EEeCC----CCCHHHHHHHHHHHHHHHHHhCCeEEEeCh------HHHHHHcCC--C--
Confidence 4456677766643 3333 34432 123445556666666777788999999842 456666664 2
Q ss_pred EEEeCC--CCHHHHHHHHHCCcEEeecccccccchHHHHHHHHhCCCCcEEEe
Q 025333 97 IIHSYL--GSAEMVPELSKLGAYFSFSGFLMSMKAQKAKKMLKVVPSERILLE 147 (254)
Q Consensus 97 IiH~fs--g~~e~~~~~l~~G~y~s~~~~~~~~~~~~~~~~l~~ip~driLlE 147 (254)
.+|.-. .....++.+...+..++++.. +..+++++.. .+.|.|++-
T Consensus 75 ~vh~~~~~~~~~~~~~~~~~~~~~g~~~~----t~~~~~~~~~-~g~d~i~~~ 122 (196)
T cd00564 75 GVHLGQDDLPVAEARALLGPDLIIGVSTH----SLEEALRAEE-LGADYVGFG 122 (196)
T ss_pred EEecCcccCCHHHHHHHcCCCCEEEeeCC----CHHHHHHHhh-cCCCEEEEC
Confidence 346432 234555666667888887742 2345555443 468999873
No 334
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=25.83 E-value=3e+02 Score=25.88 Aligned_cols=126 Identities=21% Similarity=0.285 Sum_probs=70.4
Q ss_pred ChhHHHHHHHHhhcCCceEEEeecCCCCCCC---CCCCHHHHHHHHHHHHHHHHhcC---------CceEEeccchHHHH
Q 025333 15 TPNWFSTLKEFFEITPAAAVGEIGLDKGSKG---REIDFMDQVGVFRQQLELAKELK---------RPASIHCVRAFGDL 82 (254)
Q Consensus 15 ~~~~l~~l~~ll~~~~~~aIGEiGLD~~~~~---~~~~~~~Q~~vf~~ql~lA~~~~---------lPvilH~~~a~~~~ 82 (254)
.+++++++.+++. ++.+=|| |||.-.... ....+.---+=|.+..++|+++| +|+.|--..|.+|+
T Consensus 149 ~eE~l~e~~~il~-gk~~Eva-IGLETanD~ire~sINKGftF~df~~A~~~ir~~g~~vktYlllKP~FlSE~eAI~D~ 226 (358)
T COG1244 149 REERLEEITEILE-GKIVEVA-IGLETANDKIREDSINKGFTFEDFVRAAEIIRNYGAKVKTYLLLKPPFLSEKEAIEDV 226 (358)
T ss_pred CHHHHHHHHHhhC-CceEEEE-EecccCcHHHHHHhhhcCCcHHHHHHHHHHHHHcCCceeEEEEecccccChHHHHHHH
Confidence 4567888888775 5566666 777654210 00112223456888899999988 57777777788888
Q ss_pred HHHHHhcCCCCCcEEEEeCC-CCHHHHHHHHHCCcEEeecccccccchHHHHHHHHhCCCCcEE
Q 025333 83 LEIMKSVGPFPDGVIIHSYL-GSAEMVPELSKLGAYFSFSGFLMSMKAQKAKKMLKVVPSERIL 145 (254)
Q Consensus 83 l~il~~~~~~~~~~IiH~fs-g~~e~~~~~l~~G~y~s~~~~~~~~~~~~~~~~l~~ip~driL 145 (254)
+.-++...+...++-+---+ -.-..++.+...|.|= ++.+.+. .+-++++-+..|.-+||
T Consensus 227 i~Si~~~~~~~d~iSinptnVqKgTlvE~lw~~g~YR--PPwLWSi-vEVL~~~~~~~~~~~i~ 287 (358)
T COG1244 227 ISSIVAAKPGTDTISINPTNVQKGTLVEKLWRRGLYR--PPWLWSI-VEVLREAKKTGPMLRIL 287 (358)
T ss_pred HHHHHHhccCCCeEEecccccchhhHHHHHHHcCCCC--CchHHHH-HHHHHHHHhcCCCCcee
Confidence 87776543322222221101 0123667888889883 3433221 23344444455543444
No 335
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=25.52 E-value=2.9e+02 Score=24.20 Aligned_cols=26 Identities=12% Similarity=0.218 Sum_probs=17.8
Q ss_pred CHHHHHHHHHHHHHHHHhcCCceE-Ee
Q 025333 49 DFMDQVGVFRQQLELAKELKRPAS-IH 74 (254)
Q Consensus 49 ~~~~Q~~vf~~ql~lA~~~~lPvi-lH 74 (254)
..+...+.+++++++|+++|.+++ ++
T Consensus 88 ~r~~~~~~~~~~i~~a~~lG~~~v~~~ 114 (279)
T TIGR00542 88 VRQQGLEIMEKAIQLARDLGIRTIQLA 114 (279)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEec
Confidence 355667777777777777777755 45
No 336
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=25.49 E-value=1.1e+02 Score=27.17 Aligned_cols=42 Identities=17% Similarity=0.094 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHHHHHHhcCCc--eEEeccc----------hHHHHHHHHHhcC
Q 025333 49 DFMDQVGVFRQQLELAKELKRP--ASIHCVR----------AFGDLLEIMKSVG 90 (254)
Q Consensus 49 ~~~~Q~~vf~~ql~lA~~~~lP--vilH~~~----------a~~~~l~il~~~~ 90 (254)
+...|.+.|+.+|+.|++.+.+ |+.|.+- ..+.+.++++++.
T Consensus 194 ~~~~Ql~WL~~~L~~a~~~~~~v~I~~HiPp~~~~~~~~~~~~~~~~~ii~~y~ 247 (296)
T cd00842 194 DPAGQLQWLEDELQEAEQAGEKVWIIGHIPPGVNSYDTLENWSERYLQIINRYS 247 (296)
T ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCcccccchHHHHHHHHHHHHHH
Confidence 4478999999999999876644 5567663 2356778888774
No 337
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=25.45 E-value=4.6e+02 Score=23.69 Aligned_cols=59 Identities=17% Similarity=0.139 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhcCCceEEeccchH------HH----HHHHHHhcCCCCCcEEEEeC-CCCHHHHHHHHHCCc
Q 025333 55 GVFRQQLELAKELKRPASIHCVRAF------GD----LLEIMKSVGPFPDGVIIHSY-LGSAEMVPELSKLGA 116 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~a~------~~----~l~il~~~~~~~~~~IiH~f-sg~~e~~~~~l~~G~ 116 (254)
+..+..++.|++.+-||+|-.-... +. +..+.++.. ..+.+|.- ..+.+.++++++.|+
T Consensus 29 e~~~avi~aAe~~~~Pvii~~~~~~~~~~~~~~~~~~~~~~a~~~~---vpv~lHlDH~~~~e~i~~Al~~G~ 98 (281)
T PRK06806 29 EMVMGAIKAAEELNSPIILQIAEVRLNHSPLHLIGPLMVAAAKQAK---VPVAVHFDHGMTFEKIKEALEIGF 98 (281)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCcchhccCChHHHHHHHHHHHHHCC---CCEEEECCCCCCHHHHHHHHHcCC
Confidence 6678888999999999998665421 12 223334432 23566511 136788888888874
No 338
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=24.77 E-value=2.4e+02 Score=26.47 Aligned_cols=58 Identities=16% Similarity=0.111 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhcCCceEEeccc---------------hHHHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHH
Q 025333 54 VGVFRQQLELAKELKRPASIHCVR---------------AFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSK 113 (254)
Q Consensus 54 ~~vf~~ql~lA~~~~lPvilH~~~---------------a~~~~l~il~~~~~~~~~~IiH~fsg~~e~~~~~l~ 113 (254)
.--|+..|++++.++..+.+-... ....+++++++++....++++.||+ ++.++.+.+
T Consensus 150 IPTL~Evl~lv~~~~v~l~iEiK~~~~~~~~~g~~~~~~~~~~l~~~l~~~g~~~~~v~iqSFd--~~~L~~~~~ 222 (356)
T cd08560 150 LMTHKESIALFKSLGVKMTPELKSPSVPMPFDGNYTQEDYAQQMIDEYKEAGVPPSRVWPQSFN--LDDIFYWIK 222 (356)
T ss_pred CCCHHHHHHHHHhcCceEEEEeCCCcccccccccccHHHHHHHHHHHHHHcCCCCCCEEEECCC--HHHHHHHHH
Confidence 345777888888777766665542 1246788888887544578999994 677776644
No 339
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=24.61 E-value=4.6e+02 Score=23.63 Aligned_cols=54 Identities=15% Similarity=0.088 Sum_probs=37.6
Q ss_pred hcCCceEEeccch--HHHHHHHHHhcCCCCCcEEEEeCCCC----------HHHHHHHHHCCcEEeeccc
Q 025333 66 ELKRPASIHCVRA--FGDLLEIMKSVGPFPDGVIIHSYLGS----------AEMVPELSKLGAYFSFSGF 123 (254)
Q Consensus 66 ~~~lPvilH~~~a--~~~~l~il~~~~~~~~~~IiH~fsg~----------~e~~~~~l~~G~y~s~~~~ 123 (254)
.+|.-.+.|+... .++.++++++.+. .+.||-+.+ ..-++++++.|+-++++..
T Consensus 207 ~~g~~ri~Hg~~l~~~~~~i~~l~~~gi----~v~~cP~Sn~~l~~~~~~~~~pi~~l~~~Gv~v~igTD 272 (324)
T TIGR01430 207 DLGATRIGHGVRALEDPELLKRLAQENI----TLEVCPTSNVALGVVKSLAEHPLRRFLEAGVKVTLNSD 272 (324)
T ss_pred HcCchhcchhhhhccCHHHHHHHHHcCc----eEEECCcccccccccCCcccChHHHHHHCCCEEEECCC
Confidence 4666678999987 4568888987753 344654332 3346788999999998763
No 340
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=24.50 E-value=4.9e+02 Score=22.91 Aligned_cols=52 Identities=13% Similarity=0.057 Sum_probs=26.7
Q ss_pred HHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhc-CCceEEeccc
Q 025333 19 FSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKEL-KRPASIHCVR 77 (254)
Q Consensus 19 l~~l~~ll~~~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~-~lPvilH~~~ 77 (254)
+.++.+... ..+-.| |+=||+.... . ....+....-++-..+ ++|+++++|.
T Consensus 31 ~~~~~~~~~-~~aD~v-ElRlD~l~~~--~---~~~~~~~~~~~l~~~~~~~PiI~T~R~ 83 (253)
T PRK02412 31 LAEALAISK-YDADII-EWRADFLEKI--S---DVESVLAAAPAIREKFAGKPLLFTFRT 83 (253)
T ss_pred HHHHHHHhh-cCCCEE-EEEechhhcc--C---CHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 334444333 234456 9999997421 1 1122222122222333 6899999996
No 341
>PF10543 ORF6N: ORF6N domain; InterPro: IPR018873 This entry represents an N-terminal DNA-binding domain found in a wide range of proteins from bacterial and eukaryotic DNA viruses and there bacterial homologues, they include the poxvirus D6R/N1R and baculoviral Bro protein families. The KilA-N domain is considered to be homologous to the fungal DNA-binding APSES domain. Both the KilA-N and APSES domains share a common fold with the nucleic acid-binding modules of the LAGLIDADG nucleases and the amino-terminal domains of the tRNA endonuclease []. This entry represents the amino-terminal domain of the Enterobacteria phage P22 antirepressor ((P03037 from SWISSPROT) []. It is found associated with IPR018876 from INTERPRO.
Probab=24.38 E-value=81 Score=23.26 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=25.2
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 025333 216 VLDYVASLLDMTKEELAELSYRNAIRLF 243 (254)
Q Consensus 216 v~~~lA~i~~~~~eev~~~~~~N~~~~f 243 (254)
+.+.||++.|++...+-+...+|-.+|=
T Consensus 14 t~~~lA~~yg~~~~~i~~~~~rN~~rF~ 41 (88)
T PF10543_consen 14 TDEDLAELYGVETKTINRNFKRNKDRFI 41 (88)
T ss_pred EHHHHHHHhCcCHHHHHHHHHHHHHhCC
Confidence 4568999999999999999999999984
No 342
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=24.26 E-value=4.1e+02 Score=25.07 Aligned_cols=78 Identities=19% Similarity=0.370 Sum_probs=48.3
Q ss_pred HHHHHHhcCCceEEeccchHHHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCc-EEeecccccccchHHHHHHHHh
Q 025333 60 QLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGA-YFSFSGFLMSMKAQKAKKMLKV 138 (254)
Q Consensus 60 ql~lA~~~~lPvilH~~~a~~~~l~il~~~~~~~~~~IiH~fsg~~e~~~~~l~~G~-y~s~~~~~~~~~~~~~~~~l~~ 138 (254)
.|++..+.|. -+.|.... ++. +..+.|..+.++|+.+-.-+.+.++.+++.|+ .+.+- +..+++.+.+.
T Consensus 51 il~~l~~~G~--g~DvaS~g-El~-~al~~G~~~~~Iif~gp~K~~~~l~~a~~~Gv~~i~vD------S~~El~~i~~~ 120 (394)
T cd06831 51 VLEILAALGT--GFACSSKN-EMA-LVQELGVSPENIIYTNPCKQASQIKYAAKVGVNIMTCD------NEIELKKIARN 120 (394)
T ss_pred HHHHHHHcCC--CeEeCCHH-HHH-HHHhcCCCcCCEEEeCCCCCHHHHHHHHHCCCCEEEEC------CHHHHHHHHHh
Confidence 3444455563 33444333 333 33345656678888776678889999999998 46554 34667666666
Q ss_pred CCCCcEEEe
Q 025333 139 VPSERILLE 147 (254)
Q Consensus 139 ip~driLlE 147 (254)
.|.-++++=
T Consensus 121 ~~~~~v~lR 129 (394)
T cd06831 121 HPNAKLLLH 129 (394)
T ss_pred CCCCcEEEE
Confidence 666677654
No 343
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=24.16 E-value=2.6e+02 Score=25.37 Aligned_cols=17 Identities=35% Similarity=0.415 Sum_probs=10.8
Q ss_pred HHHHHHhcCCceE-Eecc
Q 025333 60 QLELAKELKRPAS-IHCV 76 (254)
Q Consensus 60 ql~lA~~~~lPvi-lH~~ 76 (254)
.++.+++++.|++ +|.+
T Consensus 125 ~~~~~a~~~~~vVlmh~~ 142 (282)
T PRK11613 125 ALEAAAETGLPVCLMHMQ 142 (282)
T ss_pred HHHHHHHcCCCEEEEcCC
Confidence 4555677777765 4764
No 344
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=24.03 E-value=4.2e+02 Score=21.95 Aligned_cols=52 Identities=23% Similarity=0.178 Sum_probs=33.7
Q ss_pred CCceEEeccchHHHHHHHHHhcCCCCCcEEEEeC---------CCCHHHHHHHHHCCcEEeeccc
Q 025333 68 KRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSY---------LGSAEMVPELSKLGAYFSFSGF 123 (254)
Q Consensus 68 ~lPvilH~~~a~~~~l~il~~~~~~~~~~IiH~f---------sg~~e~~~~~l~~G~y~s~~~~ 123 (254)
..-++.|+.....+.++.+++.+. .+.+|. ......++.+++.|.-+.++..
T Consensus 174 ~~~~~~H~~~~~~~~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~lgTD 234 (275)
T cd01292 174 GRVVIGHVSHLDPELLELLKEAGV----SLEVCPLSNYLLGRDGEGAEALRRLLELGIRVTLGTD 234 (275)
T ss_pred CCEEEECCccCCHHHHHHHHHcCC----eEEECCcccccccCCcCCcccHHHHHHCCCcEEEecC
Confidence 344667999877777888877653 122221 2234567788888988888754
No 345
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.93 E-value=1.7e+02 Score=24.84 Aligned_cols=48 Identities=29% Similarity=0.360 Sum_probs=33.0
Q ss_pred hhHHHHHH--HHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHH-HHHHhcCCceEE
Q 025333 16 PNWFSTLK--EFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQL-ELAKELKRPASI 73 (254)
Q Consensus 16 ~~~l~~l~--~ll~~~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql-~lA~~~~lPvil 73 (254)
.+|+..|. .|.+++.++..| ...+++.|+.|=++|. ++|.++++|-+=
T Consensus 110 rnWlSQL~~hAYcE~PDivlcG----------NK~DL~~~R~Vs~~qa~~La~kyglPYfE 160 (219)
T KOG0081|consen 110 RNWLSQLQTHAYCENPDIVLCG----------NKADLEDQRVVSEDQAAALADKYGLPYFE 160 (219)
T ss_pred HHHHHHHHHhhccCCCCEEEEc----------CccchhhhhhhhHHHHHHHHHHhCCCeee
Confidence 35666663 556666666655 2347788888888664 678889999763
No 346
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=23.92 E-value=2.5e+02 Score=25.29 Aligned_cols=104 Identities=15% Similarity=0.102 Sum_probs=59.0
Q ss_pred eeccccccccCChhHHHHHHHHhhcCCceEEE---------------eecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 025333 4 VCFIFRFVQERTPNWFSTLKEFFEITPAAAVG---------------EIGLDKGSKGREIDFMDQVGVFRQQLELAKELK 68 (254)
Q Consensus 4 ~G~HP~~~~~~~~~~l~~l~~ll~~~~~~aIG---------------EiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~ 68 (254)
..|||-+.-...++.+++|.+- +++|= |+|=.++. ..+.|+..|....-.|..
T Consensus 118 asiHP~f~Fsgl~edl~rl~d~-----~~~i~eaD~~g~ai~q~la~emgg~~f~-----V~~~~r~lYHaaa~~asn-- 185 (289)
T COG5495 118 ASIHPAFSFSGLDEDLSRLKDT-----IFGITEADDVGYAIVQSLALEMGGEPFC-----VREEARILYHAAAVHASN-- 185 (289)
T ss_pred eeecccccccCCHHHHHhCccc-----EEEeecccccccHHHHHHHHHhCCCcee-----echhHHHHHHHHHHHhhc--
Confidence 5799999988788888865432 33442 22222221 234555555555444433
Q ss_pred CceEEeccchHHHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCcEEeecccc
Q 025333 69 RPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFL 124 (254)
Q Consensus 69 lPvilH~~~a~~~~l~il~~~~~~~~~~IiH~fsg~~e~~~~~l~~G~y~s~~~~~ 124 (254)
|.+-..-+.+++.+..+.+....|+|...--.-.+...+++|.--+++|.+
T Consensus 186 -----f~v~~l~~a~~i~~aag~Dq~e~iv~~~pL~~g~~~n~~qrg~a~aLTgpV 236 (289)
T COG5495 186 -----FIVTVLADALEIYRAAGDDQPELIVEVGPLARGALENTLQRGQACALTGPV 236 (289)
T ss_pred -----cHHHHHHHHHHHHHHhcCCCcceeeeehHHHHHHHHHHHHhhhhhcccCCc
Confidence 233334566677777776655678893322223344556678777777765
No 347
>PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed
Probab=23.91 E-value=6.2e+02 Score=23.92 Aligned_cols=51 Identities=18% Similarity=0.127 Sum_probs=35.4
Q ss_pred CceEEeccchHHHHHHHHHhcCCCCCcEEEEeCCCC------HHHHHHHHHCCcEEeeccc
Q 025333 69 RPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGS------AEMVPELSKLGAYFSFSGF 123 (254)
Q Consensus 69 lPvilH~~~a~~~~l~il~~~~~~~~~~IiH~fsg~------~e~~~~~l~~G~y~s~~~~ 123 (254)
..++.||....++.++.+++.+. .+.||-+.+ ..-++.+++.|+-++++..
T Consensus 265 ~~~~~H~~~l~~~~~~~la~~g~----~v~~~P~~~~~l~~~~~~~~~~~~~Gv~v~lGtD 321 (451)
T PRK08203 265 DVWLAHCVHLDDAEIARLARTGT----GVAHCPCSNMRLASGIAPVRELRAAGVPVGLGVD 321 (451)
T ss_pred CeEEEEEeCCCHHHHHHHHhcCC----eEEECcHHhhhhccCCCCHHHHHHCCCeEEEecC
Confidence 34788999988888888888753 355664322 2235678888988888753
No 348
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=23.90 E-value=4e+02 Score=22.45 Aligned_cols=55 Identities=20% Similarity=0.204 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhcCCceEEeccch-------HHHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHH
Q 025333 56 VFRQQLELAKELKRPASIHCVRA-------FGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSK 113 (254)
Q Consensus 56 vf~~ql~lA~~~~lPvilH~~~a-------~~~~l~il~~~~~~~~~~IiH~fsg~~e~~~~~l~ 113 (254)
-|+..|+++...+..+.|..... ...+++++++++.. .++++-+| +.+.++.+.+
T Consensus 84 tL~evl~~~~~~~~~l~iEiK~~~~~~~~~~~~v~~~l~~~~~~-~~v~v~Sf--~~~~l~~~~~ 145 (220)
T cd08579 84 SLDEYLALAKGLKQKLLIELKPHGHDSPDLVEKFVKLYKQNLIE-NQHQVHSL--DYRVIEKVKK 145 (220)
T ss_pred CHHHHHHHhhccCCeEEEEECCCCCCCHHHHHHHHHHHHHcCCC-cCeEEEeC--CHHHHHHHHH
Confidence 46667777777778888877743 35677888887643 46788888 4666666654
No 349
>PRK07572 cytosine deaminase; Validated
Probab=23.60 E-value=6.2e+02 Score=23.82 Aligned_cols=61 Identities=23% Similarity=0.202 Sum_probs=38.2
Q ss_pred HHHHHHHhcCC---ceEEeccc-------hHHHHHHHHHhcCCCCCcEEEEeCCCC---------------HHHHHHHHH
Q 025333 59 QQLELAKELKR---PASIHCVR-------AFGDLLEIMKSVGPFPDGVIIHSYLGS---------------AEMVPELSK 113 (254)
Q Consensus 59 ~ql~lA~~~~l---PvilH~~~-------a~~~~l~il~~~~~~~~~~IiH~fsg~---------------~e~~~~~l~ 113 (254)
+..+...++|+ .+..||.. ..++.+++|++.+. .|+||...+ ...++++++
T Consensus 224 ~~~~~~~~~G~~~~v~~~H~~~l~~~~~~~~~~~~~~la~~g~----~vv~~P~~n~~l~~~~~~~~~~~g~~~v~~l~~ 299 (426)
T PRK07572 224 TLAAETQRLGLQGRVAGSHLTSMHSMDNYYVSKLIPLMAEAGV----NAIANPLINITLQGRHDTYPKRRGMTRVPELMA 299 (426)
T ss_pred HHHHHHHHhCCCCCEEEEccchhhcCCHHHHHHHHHHHHHcCC----eEEECchhhhhhcCCCCCCCCCCCCcCHHHHHH
Confidence 33444445544 55689964 23477888988763 467765322 234678888
Q ss_pred CCcEEeeccc
Q 025333 114 LGAYFSFSGF 123 (254)
Q Consensus 114 ~G~y~s~~~~ 123 (254)
.|+-++++..
T Consensus 300 ~GV~v~lGtD 309 (426)
T PRK07572 300 AGINVAFGHD 309 (426)
T ss_pred CCCcEEEecC
Confidence 8988888753
No 350
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=23.52 E-value=93 Score=30.70 Aligned_cols=41 Identities=10% Similarity=-0.028 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCceEEeccc------------------hHHHHHHHHHhcC
Q 025333 50 FMDQVGVFRQQLELAKELKRPASIHCVR------------------AFGDLLEIMKSVG 90 (254)
Q Consensus 50 ~~~Q~~vf~~ql~lA~~~~lPvilH~~~------------------a~~~~l~il~~~~ 90 (254)
-+.|.++++++|+.+..-..-|++|..- ..++++++|+++.
T Consensus 321 ~eeQL~WLeqeLa~a~~k~VVVf~HHPp~s~g~~~~Dp~~pg~~~~n~~eLldLL~~yp 379 (496)
T TIGR03767 321 GQTQFKWIKDTLRASSDTLFVLFSHHTSWSMVNELTDPVDPGEKRHLGTELVSLLLEHP 379 (496)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEECCCCccccccccccccccccccCHHHHHHHHhcCC
Confidence 3799999999999765444556788741 1357888888763
No 351
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=23.42 E-value=4.8e+02 Score=22.55 Aligned_cols=76 Identities=7% Similarity=0.036 Sum_probs=44.4
Q ss_pred CCceEEecc-chHHHHHHHHHhcCCCCCcEEEEeCCCCH---HHHHHHHHCCcEEeecccccccchHHHHHHHHhCCCCc
Q 025333 68 KRPASIHCV-RAFGDLLEIMKSVGPFPDGVIIHSYLGSA---EMVPELSKLGAYFSFSGFLMSMKAQKAKKMLKVVPSER 143 (254)
Q Consensus 68 ~lPvilH~~-~a~~~~l~il~~~~~~~~~~IiH~fsg~~---e~~~~~l~~G~y~s~~~~~~~~~~~~~~~~l~~ip~dr 143 (254)
++|+-+|.- ......++.+.+.|. .-+.+|.-++.. +.++.+.+.|.-++++-.. ....+.+..+++.-..|.
T Consensus 65 ~~~lDvHLm~~~p~~~i~~~~~~Ga--d~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p-~t~~e~l~~~l~~~~vD~ 141 (228)
T PTZ00170 65 NTFLDCHLMVSNPEKWVDDFAKAGA--SQFTFHIEATEDDPKAVARKIREAGMKVGVAIKP-KTPVEVLFPLIDTDLVDM 141 (228)
T ss_pred CCCEEEEECCCCHHHHHHHHHHcCC--CEEEEeccCCchHHHHHHHHHHHCCCeEEEEECC-CCCHHHHHHHHccchhhh
Confidence 688888877 445666677777775 346779776542 3334444568766665432 223455666653222466
Q ss_pred EEE
Q 025333 144 ILL 146 (254)
Q Consensus 144 iLl 146 (254)
+|+
T Consensus 142 Vl~ 144 (228)
T PTZ00170 142 VLV 144 (228)
T ss_pred HHh
Confidence 653
No 352
>PRK07583 cytosine deaminase-like protein; Validated
Probab=23.30 E-value=6.4e+02 Score=23.86 Aligned_cols=23 Identities=4% Similarity=0.092 Sum_probs=20.1
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCC
Q 025333 225 DMTKEELAELSYRNAIRLFSYEG 247 (254)
Q Consensus 225 ~~~~eev~~~~~~N~~~~f~~~~ 247 (254)
+.+.+++.+.++.|..+++++++
T Consensus 359 ~~~~~~al~~~T~~~A~~lg~~~ 381 (438)
T PRK07583 359 DHPYDDWPAAVTTTPADIMGLPD 381 (438)
T ss_pred CCcHHHHHHHHhHHHHHHcCCCC
Confidence 67888999999999999999864
No 353
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=23.21 E-value=2.3e+02 Score=26.40 Aligned_cols=50 Identities=14% Similarity=0.149 Sum_probs=26.6
Q ss_pred HHHHhc-CCceEEeccch-HHHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCC
Q 025333 62 ELAKEL-KRPASIHCVRA-FGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLG 115 (254)
Q Consensus 62 ~lA~~~-~lPvilH~~~a-~~~~l~il~~~~~~~~~~IiH~fsg~~e~~~~~l~~G 115 (254)
++++.. +.|+++|.... .++.++.+..+|.... -.+.-+.+.++++++.|
T Consensus 210 ~I~~~~~~vPLVLHGgSg~~~~~~~~~~~~g~~~~----~~~Gi~~e~~~kai~~G 261 (321)
T PRK07084 210 EIEKRIPGFPIVLHGSSSVPQEYVKTINEYGGKLK----DAIGIPEEQLRKAAKSA 261 (321)
T ss_pred HHHHhcCCCCEEEeCCCCCcHHHHHHHHHhcCccc----cCCCCCHHHHHHHHHcC
Confidence 344445 56666666653 3345555555542111 22334566777777776
No 354
>PRK15493 5-methylthioadenosine/S-adenosylhomocysteine deaminase; Provisional
Probab=23.15 E-value=4.6e+02 Score=24.88 Aligned_cols=59 Identities=12% Similarity=-0.006 Sum_probs=40.0
Q ss_pred HHHHHhcCCc----eEEeccchHHHHHHHHHhcCCCCCcEEEEeCCCC------HHHHHHHHHCCcEEeeccc
Q 025333 61 LELAKELKRP----ASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGS------AEMVPELSKLGAYFSFSGF 123 (254)
Q Consensus 61 l~lA~~~~lP----vilH~~~a~~~~l~il~~~~~~~~~~IiH~fsg~------~e~~~~~l~~G~y~s~~~~ 123 (254)
++...++|+. ++.||....++-++++.+.+. .|.||-..+ ..-++++++.|+-++++..
T Consensus 236 ~~~l~~~Gll~~~~~~~H~~~l~~~d~~~la~~g~----~v~~~P~sn~~l~~g~~p~~~~~~~Gv~v~lGtD 304 (435)
T PRK15493 236 VEYAASCGLFKRPTVIAHGVVLNDNERAFLAEHDV----RVAHNPNSNLKLGSGIANVKAMLEAGIKVGIATD 304 (435)
T ss_pred HHHHHHcCCCCCCcEEEEeecCCHHHHHHHHHcCC----eEEEChHHHHHHhcCcccHHHHHHCCCeEEEccC
Confidence 4444555543 789999988888888988763 467874322 2234677888988888753
No 355
>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A.
Probab=23.06 E-value=1.1e+02 Score=19.35 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=16.4
Q ss_pred HHHHHHhccCCCHHHHHHHHHHH
Q 025333 216 VLDYVASLLDMTKEELAELSYRN 238 (254)
Q Consensus 216 v~~~lA~i~~~~~eev~~~~~~N 238 (254)
....||+..|.+...|.+.+.+|
T Consensus 22 s~~~IA~~lg~s~sTV~relkR~ 44 (44)
T PF13936_consen 22 SIREIAKRLGRSRSTVSRELKRN 44 (44)
T ss_dssp -HHHHHHHTT--HHHHHHHHHHH
T ss_pred CHHHHHHHHCcCcHHHHHHHhcC
Confidence 35678888899999998888776
No 356
>PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A ....
Probab=22.93 E-value=2.1e+02 Score=24.50 Aligned_cols=73 Identities=15% Similarity=0.207 Sum_probs=48.2
Q ss_pred CceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccc--hHHHHHHHHH------hcCCCCCcEEEEeC
Q 025333 30 PAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVR--AFGDLLEIMK------SVGPFPDGVIIHSY 101 (254)
Q Consensus 30 ~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~--a~~~~l~il~------~~~~~~~~~IiH~f 101 (254)
.+.+| |+|++++.. ...+ ++.+.++..++.++||++=... ....+...++ ..+. .-+.+|++
T Consensus 25 ~v~~i-KvG~~l~~~-----~G~~--~l~~~i~~l~~~~~~I~~D~K~~Dig~t~~~~~~~~~~~~~~ga--D~vTv~~~ 94 (226)
T PF00215_consen 25 YVDII-KVGTPLFLA-----YGLE--ALPEIIEELKERGKPIFLDLKLGDIGNTVARYAEAGFAAFELGA--DAVTVHPF 94 (226)
T ss_dssp GSSEE-EEEHHHHHH-----HCHH--HHHHHHHHHHHTTSEEEEEEEE-SSHHHHHHHHHSCHHHHTTTE--SEEEEEGT
T ss_pred cceEE-EEChHHHhc-----CChh--hHHHHHHHHHHhcCCEeeeeeecccchHHHHHHHHhhhhhcCCC--cEEEEecc
Confidence 45566 999998742 1122 8999999999999999976653 3344444443 3432 34677999
Q ss_pred CCCHHHHHHHHH
Q 025333 102 LGSAEMVPELSK 113 (254)
Q Consensus 102 sg~~e~~~~~l~ 113 (254)
.| .++++.+++
T Consensus 95 ~G-~~tl~~~~~ 105 (226)
T PF00215_consen 95 AG-DDTLEAAVK 105 (226)
T ss_dssp TH-HHHHHHHHH
T ss_pred CC-HHHHHHHHH
Confidence 76 566665554
No 357
>PF08440 Poty_PP: Potyviridae polyprotein; InterPro: IPR013648 This domain is found in polyproteins of the viral Potyviridae taxon. ; GO: 0003968 RNA-directed RNA polymerase activity, 0005198 structural molecule activity, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0018144 RNA-protein covalent cross-linking
Probab=22.91 E-value=1e+02 Score=28.05 Aligned_cols=66 Identities=20% Similarity=0.217 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhcCCce--EEeccc----hHHHHHHHHHhcCCCCC------cEEEEeCCCCHHHHHHHHHCCcEEee
Q 025333 55 GVFRQQLELAKELKRPA--SIHCVR----AFGDLLEIMKSVGPFPD------GVIIHSYLGSAEMVPELSKLGAYFSF 120 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPv--ilH~~~----a~~~~l~il~~~~~~~~------~~IiH~fsg~~e~~~~~l~~G~y~s~ 120 (254)
.+=.+|.+-+....+|. +.|.++ .+..+.++|+++..... ..|-|..+.+|-.+++|.+.|+-+..
T Consensus 24 ~cTv~QArTm~~FEL~~ffm~~lV~~DGsMhp~ih~lLK~~kLRdsei~L~~~aip~~~~~~W~tv~eY~~~g~~~~~ 101 (274)
T PF08440_consen 24 NCTVKQARTMMQFELPPFFMVHLVRYDGSMHPEIHELLKKYKLRDSEIKLNKLAIPNRSVSSWLTVREYNRLGSRIDI 101 (274)
T ss_pred HhHHHHHHHHHHcCCCHHHHHHHhccCCCcCHHHHHHHHhccCCcchhccccccCccccCCCCCCHHHHHhcCcccCC
Confidence 33344555555444442 234443 45678888888753221 23446667778888888888765554
No 358
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=22.63 E-value=5.4e+02 Score=22.77 Aligned_cols=60 Identities=12% Similarity=0.149 Sum_probs=38.2
Q ss_pred hhHHHHHHHHhhcC-CceEEEeecCCCCCC-CCCCCHHHHHHHHHHHHHHHHhc-CCceEEeccch
Q 025333 16 PNWFSTLKEFFEIT-PAAAVGEIGLDKGSK-GREIDFMDQVGVFRQQLELAKEL-KRPASIHCVRA 78 (254)
Q Consensus 16 ~~~l~~l~~ll~~~-~~~aIGEiGLD~~~~-~~~~~~~~Q~~vf~~ql~lA~~~-~lPvilH~~~a 78 (254)
++.++..+++++.+ .++=| |-.-... ....+.+.+.+-+...++.+++. ++||+||+.+.
T Consensus 23 ~~~~~~a~~~~~~GA~iIDI---G~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT~~~ 85 (257)
T TIGR01496 23 DKAVAHAERMLEEGADIIDV---GGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVDTYRA 85 (257)
T ss_pred HHHHHHHHHHHHCCCCEEEE---CCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCCH
Confidence 45566777777654 34444 4221111 11235566777888888888886 99999999984
No 359
>PF13456 RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EHG_A 3HST_B.
Probab=22.62 E-value=63 Score=22.45 Aligned_cols=19 Identities=16% Similarity=0.289 Sum_probs=13.3
Q ss_pred HHHHHhCCCCcEEEecCCC
Q 025333 133 KKMLKVVPSERILLETDAP 151 (254)
Q Consensus 133 ~~~l~~ip~driLlETD~P 151 (254)
-+.+...+..+|.+|||+-
T Consensus 13 l~~a~~~g~~~i~v~sDs~ 31 (87)
T PF13456_consen 13 LQLAWELGIRKIIVESDSQ 31 (87)
T ss_dssp HHHHHCCT-SCEEEEES-H
T ss_pred HHHHHHCCCCEEEEEecCc
Confidence 3455678999999999993
No 360
>PRK13206 ureC urease subunit alpha; Reviewed
Probab=22.53 E-value=80 Score=31.75 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhcCCceEEeccc
Q 025333 55 GVFRQQLELAKELKRPASIHCVR 77 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~ 77 (254)
..+.+.++.|.++|+||.+||+.
T Consensus 234 ~~i~~aL~~A~~~gv~V~iHadt 256 (573)
T PRK13206 234 AAIDACLRVADAAGVQVALHSDT 256 (573)
T ss_pred HHHHHHHHHHHHhCCEEEEECCC
Confidence 57888999999999999999996
No 361
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=22.44 E-value=5.6e+02 Score=22.88 Aligned_cols=89 Identities=16% Similarity=0.210 Sum_probs=47.5
Q ss_pred HHHHHHHhcCCceEEeccc-----hHHHHHHHHHhcCCCCCcEEEE-eCCCCHH---------HHHHHHH-CC--cEEee
Q 025333 59 QQLELAKELKRPASIHCVR-----AFGDLLEIMKSVGPFPDGVIIH-SYLGSAE---------MVPELSK-LG--AYFSF 120 (254)
Q Consensus 59 ~ql~lA~~~~lPvilH~~~-----a~~~~l~il~~~~~~~~~~IiH-~fsg~~e---------~~~~~l~-~G--~y~s~ 120 (254)
..|+.+.+.|+||+|=... .+...++.+.+.|. +.-++.| |.++-.. .+..+.+ .+ +.++.
T Consensus 113 ~LL~~va~tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn-~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~~lPVivd~ 191 (250)
T PRK13397 113 EFLKTLSHIDKPILFKRGLMATIEEYLGALSYLQDTGK-SNIILCERGVRGYDVETRNMLDIMAVPIIQQKTDLPIIVDV 191 (250)
T ss_pred HHHHHHHccCCeEEEeCCCCCCHHHHHHHHHHHHHcCC-CeEEEEccccCCCCCccccccCHHHHHHHHHHhCCCeEECC
Confidence 4566677889999998883 23445566666664 2224458 6543221 1122222 23 33444
Q ss_pred cccccccch--HHHHHHHHhCCCCcEEEecC
Q 025333 121 SGFLMSMKA--QKAKKMLKVVPSERILLETD 149 (254)
Q Consensus 121 ~~~~~~~~~--~~~~~~l~~ip~driLlETD 149 (254)
|-.. ..+. ..+-.+.-..+.|=|++|+-
T Consensus 192 SHs~-G~r~~v~~~a~AAvA~GAdGl~IE~H 221 (250)
T PRK13397 192 SHST-GRRDLLLPAAKIAKAVGANGIMMEVH 221 (250)
T ss_pred CCCC-cccchHHHHHHHHHHhCCCEEEEEec
Confidence 4211 1111 12333444679999999984
No 362
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=22.37 E-value=1.7e+02 Score=25.04 Aligned_cols=80 Identities=14% Similarity=0.184 Sum_probs=49.2
Q ss_pred cCCceEEecc-chHHHHHHHHHhcCCCCCcEEEEeCCC--CHHHHHHHHHCCcEEeecccccccchHHHHHHHHhCCCCc
Q 025333 67 LKRPASIHCV-RAFGDLLEIMKSVGPFPDGVIIHSYLG--SAEMVPELSKLGAYFSFSGFLMSMKAQKAKKMLKVVPSER 143 (254)
Q Consensus 67 ~~lPvilH~~-~a~~~~l~il~~~~~~~~~~IiH~fsg--~~e~~~~~l~~G~y~s~~~~~~~~~~~~~~~~l~~ip~dr 143 (254)
.++|+-+|.- ....+.++.+.+.+. ..+.+|.=+. ..+.++.+.+.|+-.|+.-.+.. ..+.+..++.. .|.
T Consensus 56 ~~~~~DvHLMv~~P~~~i~~~~~~g~--~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T-~~~~~~~~l~~--vD~ 130 (201)
T PF00834_consen 56 TDLPLDVHLMVENPERYIEEFAEAGA--DYITFHAEATEDPKETIKYIKEAGIKAGIALNPET-PVEELEPYLDQ--VDM 130 (201)
T ss_dssp SSSEEEEEEESSSGGGHHHHHHHHT---SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS--GGGGTTTGCC--SSE
T ss_pred CCCcEEEEeeeccHHHHHHHHHhcCC--CEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCC-CchHHHHHhhh--cCE
Confidence 7899999984 334566777777764 4578895433 24566666778888777644321 12334455554 489
Q ss_pred EEEecCCC
Q 025333 144 ILLETDAP 151 (254)
Q Consensus 144 iLlETD~P 151 (254)
+|+=|=.|
T Consensus 131 VlvMsV~P 138 (201)
T PF00834_consen 131 VLVMSVEP 138 (201)
T ss_dssp EEEESS-T
T ss_pred EEEEEecC
Confidence 89887444
No 363
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=22.26 E-value=5.1e+02 Score=27.06 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=23.2
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHh
Q 025333 216 VLDYVASLLDMTKEELAELSYRNAIRL 242 (254)
Q Consensus 216 v~~~lA~i~~~~~eev~~~~~~N~~~~ 242 (254)
+.+.+.++..++.+++.++=++-++++
T Consensus 378 i~~~L~~l~~~~~~~l~~~R~~kfr~~ 404 (762)
T PLN03229 378 INENMDELGKMDTEELLKHRMLKFRKI 404 (762)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 456788899999999999998888876
No 364
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=22.09 E-value=5.2e+02 Score=22.37 Aligned_cols=59 Identities=12% Similarity=0.038 Sum_probs=36.4
Q ss_pred CChhHHHHHHHHhhcCCceEEEeecCCC---CCCCC--CCCHHHHHHHHHHHHHHHHhcCCceEE
Q 025333 14 RTPNWFSTLKEFFEITPAAAVGEIGLDK---GSKGR--EIDFMDQVGVFRQQLELAKELKRPASI 73 (254)
Q Consensus 14 ~~~~~l~~l~~ll~~~~~~aIGEiGLD~---~~~~~--~~~~~~Q~~vf~~ql~lA~~~~lPvil 73 (254)
.++..++.+.+.+++..+ .|.-++++. +.... ....+...+.|++.++.|+++|.+++.
T Consensus 49 ~~~~~~~~l~~~l~~~Gl-~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~ 112 (284)
T PRK13210 49 WSKEERLSLVKAIYETGV-RIPSMCLSGHRRFPFGSRDPATRERALEIMKKAIRLAQDLGIRTIQ 112 (284)
T ss_pred CCHHHHHHHHHHHHHcCC-CceEEecccccCcCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 345668888888877643 222233321 11111 112345678899999999999999775
No 365
>PRK05985 cytosine deaminase; Provisional
Probab=22.01 E-value=6.1e+02 Score=23.41 Aligned_cols=63 Identities=16% Similarity=0.072 Sum_probs=39.0
Q ss_pred HHHHHHHHHhcCCc---eEEeccch-------HHHHHHHHHhcCCCCCcEEEEeCC--CCHHHHHHHHHCCcEEeeccc
Q 025333 57 FRQQLELAKELKRP---ASIHCVRA-------FGDLLEIMKSVGPFPDGVIIHSYL--GSAEMVPELSKLGAYFSFSGF 123 (254)
Q Consensus 57 f~~ql~lA~~~~lP---vilH~~~a-------~~~~l~il~~~~~~~~~~IiH~fs--g~~e~~~~~l~~G~y~s~~~~ 123 (254)
+...++.+.+++.+ .+-|+... .+++++.+++.+. .|.|+.. ....-++.+++.|+-++++..
T Consensus 222 ~~~~~e~~~~~g~~~~~~i~H~~~l~~~~~~~~~~~i~~lae~g~----~v~~~~~~~~~~~~~~~l~~~Gv~v~lGtD 296 (391)
T PRK05985 222 LERIAARTRALGMQGRVAVSHAFCLGDLPEREVDRLAERLAEAGV----AIMTNAPGSVPVPPVAALRAAGVTVFGGND 296 (391)
T ss_pred HHHHHHHHHHhCCCCCEehhhhhhhhcCCHHHHHHHHHHHHHcCC----eEEEeCCCCCCCCCHHHHHHCCCeEEEecC
Confidence 33455666666654 66787642 2456777777653 3556532 123457788899999988753
No 366
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=21.97 E-value=3.8e+02 Score=24.33 Aligned_cols=24 Identities=25% Similarity=0.109 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHhcCCceEEeccc
Q 025333 54 VGVFRQQLELAKELKRPASIHCVR 77 (254)
Q Consensus 54 ~~vf~~ql~lA~~~~lPvilH~~~ 77 (254)
.+-|+..=++|+++|.-|++|-..
T Consensus 86 ~~~l~~iG~~~~~~~iRls~HP~q 109 (275)
T PF03851_consen 86 AEELAEIGDLAKENGIRLSMHPDQ 109 (275)
T ss_dssp HHHHHHHHHHHHHTT-EEEE---T
T ss_pred HHHHHHHHHHHHHcCCeEEecCCc
Confidence 345555556788899999999875
No 367
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=21.86 E-value=2.5e+02 Score=24.57 Aligned_cols=48 Identities=21% Similarity=0.295 Sum_probs=34.3
Q ss_pred HHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEecc
Q 025333 19 FSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCV 76 (254)
Q Consensus 19 l~~l~~ll~~~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~ 76 (254)
.+.+.+++++..++.|| +|+-.. ...+.+...++.+++++.||++-..
T Consensus 40 ~e~~~~~l~~~d~vvi~-~G~l~~---------~~~~~i~~~~~~~~~~~~pvVlDp~ 87 (242)
T cd01170 40 PEEVEELAKIAGALVIN-IGTLTS---------EQIEAMLKAGKAANQLGKPVVLDPV 87 (242)
T ss_pred HHHHHHHHHHcCcEEEe-CCCCCh---------HHHHHHHHHHHHHHhcCCCEEEccc
Confidence 45666667766788886 776531 2345667777889999999999865
No 368
>cd08565 GDPD_pAtGDE_like Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (pAtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=21.60 E-value=3.8e+02 Score=23.14 Aligned_cols=54 Identities=11% Similarity=0.171 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcCCceEEeccch---------HHHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHH
Q 025333 57 FRQQLELAKELKRPASIHCVRA---------FGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSK 113 (254)
Q Consensus 57 f~~ql~lA~~~~lPvilH~~~a---------~~~~l~il~~~~~~~~~~IiH~fsg~~e~~~~~l~ 113 (254)
|+..|++++..+..+.|-.... ...+++++++++.. .++++.+| +++.++.+.+
T Consensus 84 L~evl~~~~~~~~~l~iEiK~~~~~~~~~~~~~~v~~~i~~~~~~-~~v~~~Sf--~~~~l~~~~~ 146 (235)
T cd08565 84 LEEVLALFAPSGLELHVEIKTDADGTPYPGAAALAAATLRRHGLL-ERSVLTSF--DPAVLTEVRK 146 (235)
T ss_pred HHHHHHHhhccCcEEEEEECCCCCCCccHHHHHHHHHHHHhCCCc-CCEEEEEC--CHHHHHHHHh
Confidence 5666677666667777766532 24577888877653 47888998 4566666554
No 369
>PRK12677 xylose isomerase; Provisional
Probab=21.57 E-value=3.9e+02 Score=25.31 Aligned_cols=23 Identities=17% Similarity=0.136 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhcCCc-eEEecc
Q 025333 54 VGVFRQQLELAKELKRP-ASIHCV 76 (254)
Q Consensus 54 ~~vf~~ql~lA~~~~lP-vilH~~ 76 (254)
.+.+++.+++|.++|.+ |++|..
T Consensus 113 i~~~~r~IdlA~eLGa~~Vvv~~G 136 (384)
T PRK12677 113 LRKVLRNIDLAAELGAKTYVMWGG 136 (384)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeC
Confidence 55699999999999999 778866
No 370
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=21.48 E-value=4e+02 Score=21.71 Aligned_cols=39 Identities=10% Similarity=0.033 Sum_probs=24.2
Q ss_pred CCCCHHHHHHHHHCCcEEeecccccccchHHHHHHHHhCCCC
Q 025333 101 YLGSAEMVPELSKLGAYFSFSGFLMSMKAQKAKKMLKVVPSE 142 (254)
Q Consensus 101 fsg~~e~~~~~l~~G~y~s~~~~~~~~~~~~~~~~l~~ip~d 142 (254)
|.|..+.++.+.+.|+-+.+-. +.....++..++..+++
T Consensus 94 ~~~~~~~L~~L~~~g~~~~i~S---n~~~~~~~~~l~~~gl~ 132 (198)
T TIGR01428 94 HPDVPAGLRALKERGYRLAILS---NGSPAMLKSLVKHAGLD 132 (198)
T ss_pred CCCHHHHHHHHHHCCCeEEEEe---CCCHHHHHHHHHHCCCh
Confidence 4566777788877787665432 22345566677777653
No 371
>cd01313 Met_dep_hydrolase_E Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=21.44 E-value=5.7e+02 Score=24.07 Aligned_cols=50 Identities=10% Similarity=-0.009 Sum_probs=36.4
Q ss_pred ceEEeccchHHHHHHHHHhcCCCCCcEEEEeCCCC------HHHHHHHHHCCcEEeeccc
Q 025333 70 PASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGS------AEMVPELSKLGAYFSFSGF 123 (254)
Q Consensus 70 PvilH~~~a~~~~l~il~~~~~~~~~~IiH~fsg~------~e~~~~~l~~G~y~s~~~~ 123 (254)
.++.||....++-+++|++.+. .+.||-..+ ..-++++++.|+-++++..
T Consensus 258 ~~~~H~~~l~~~~~~~la~~g~----~v~~~P~sn~~lg~g~~p~~~l~~~Gv~v~lGtD 313 (418)
T cd01313 258 WCLVHATHLTDNETLLLGRSGA----VVGLCPTTEANLGDGIFPAAALLAAGGRIGIGSD 313 (418)
T ss_pred EEEEeCCCCCHHHHHHHHHcCC----EEEECCCchhhccCCCCCHHHHHHCCCcEEEecC
Confidence 4789999988878889988763 466765422 2345778889999888864
No 372
>smart00759 Flu_M1_C Influenza Matrix protein (M1) C-terminal domain. This region is thought to be a second domain of the M1 matrix protein.
Probab=21.43 E-value=42 Score=25.07 Aligned_cols=26 Identities=8% Similarity=-0.111 Sum_probs=20.7
Q ss_pred CceeeccccccccCChhHHHHHHHHh
Q 025333 1 MDWVCFIFRFVQERTPNWFSTLKEFF 26 (254)
Q Consensus 1 ~~~~G~HP~~~~~~~~~~l~~l~~ll 26 (254)
|++||-||.......++.++.|..+-
T Consensus 59 lRsiGahp~s~~Gi~dDllEnLq~~q 84 (95)
T smart00759 59 LRSIGAHPKSGAGIADDLLENLKASQ 84 (95)
T ss_pred HHHhcCCCCCccchHHHHHHHHHHHh
Confidence 46789999988887888888887663
No 373
>PRK13308 ureC urease subunit alpha; Reviewed
Probab=21.42 E-value=86 Score=31.49 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhcCCceEEeccc
Q 025333 55 GVFRQQLELAKELKRPASIHCVR 77 (254)
Q Consensus 55 ~vf~~ql~lA~~~~lPvilH~~~ 77 (254)
..+.+.++.|.++|+||.+||+.
T Consensus 228 ~~i~~aL~~A~~~dv~VaiHadt 250 (569)
T PRK13308 228 AAIDTCLEVADEYDFQVQLHTDT 250 (569)
T ss_pred HHHHHHHHHHHhcCCEEEEeCCC
Confidence 67889999999999999999997
No 374
>PF06050 HGD-D: 2-hydroxyglutaryl-CoA dehydratase, D-component ; InterPro: IPR010327 Degradation of glutamate via the hydroxyglutarate pathway involves the syn-elimination of water from 2-hydroxyglutaryl-CoA. This anaerobic process is catalysed by 2-hydroxyglutaryl-CoA dehydratase, an enzyme with two components (A and D) that reversibly associate during reaction cycles. This component contains one non-reducible [4Fe-4S]2+ cluster and a reduced riboflavin 5'-monophosphate [].; PDB: 3O3O_B 3O3N_D 3O3M_D.
Probab=21.40 E-value=4.8e+02 Score=23.38 Aligned_cols=104 Identities=23% Similarity=0.230 Sum_probs=53.0
Q ss_pred HHHhhcCCceEEEe---ecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccchHHHHHHHHHhcCCCCCcEEEE
Q 025333 23 KEFFEITPAAAVGE---IGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIH 99 (254)
Q Consensus 23 ~~ll~~~~~~aIGE---iGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a~~~~l~il~~~~~~~~~~IiH 99 (254)
.+++++...+.||+ .|...... ..+.+ ...++...+..-....|.. +.+..+.+.+++++++. ..+|+|
T Consensus 222 ~~~~e~~G~~vv~~~~~~~~~~~~~--~~~~~--~~pl~~la~~~~~~~~~~~--~~~r~~~~~~~~~~~~~--dgvi~~ 293 (349)
T PF06050_consen 222 FEWIEESGAVVVGDDYCFGWRMFYG--VVDED--EDPLEALAERYLNRPRPCP--RERRIEYIDDLIEKYGA--DGVIFH 293 (349)
T ss_dssp HHHHHHTTEEEEEECCCCTCCHHSS--TT-HH--SSHHHHHHHHHHCSGGCBT--CHCHHHHHHHHHHHTT---SEEEEE
T ss_pred HHHHhcccceeeecccchhHHhhhc--cCCCc--chHHHHHHHHHHHhcCCCC--hHhHHHHHHHHHHHhCC--CEEEEh
Confidence 45555556666776 33332221 11111 2334444333332222222 26677889999999864 456667
Q ss_pred eCCCCHHHHHHHHHCCcEEeecccccccchHHHHHHHHhC-CCCcEEEecCCCC
Q 025333 100 SYLGSAEMVPELSKLGAYFSFSGFLMSMKAQKAKKMLKVV-PSERILLETDAPD 152 (254)
Q Consensus 100 ~fsg~~e~~~~~l~~G~y~s~~~~~~~~~~~~~~~~l~~i-p~driLlETD~P~ 152 (254)
...|..... . ....+++.+++. +..-+.+|+|..+
T Consensus 294 ~~~~C~~~~-------------~-----~~~~l~~~~~~~~gIP~l~le~d~~d 329 (349)
T PF06050_consen 294 GHKGCDPYS-------------Y-----DQPLLKEALREFLGIPVLFLEGDYVD 329 (349)
T ss_dssp EETT-HHHH-------------C-----CHHHHHHHHHCCHT--EEEEEE-TS-
T ss_pred HhcCCCcHH-------------H-----HHHHHHHHHHHhcCCCeEeecccccc
Confidence 654432111 1 235677888887 8888999999854
No 375
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
Probab=21.36 E-value=3.4e+02 Score=25.85 Aligned_cols=52 Identities=17% Similarity=0.316 Sum_probs=36.1
Q ss_pred cCCCCCcEEEEeCCCCHHHHHHHHHCCcE-EeecccccccchHHHHHHHHhCCC--CcEEE
Q 025333 89 VGPFPDGVIIHSYLGSAEMVPELSKLGAY-FSFSGFLMSMKAQKAKKMLKVVPS--ERILL 146 (254)
Q Consensus 89 ~~~~~~~~IiH~fsg~~e~~~~~l~~G~y-~s~~~~~~~~~~~~~~~~l~~ip~--driLl 146 (254)
.|..+.++++|+-.-+.++++.+++.|+. |.+.. ..+++.+-+..+. -++.+
T Consensus 92 aG~~~~~I~f~g~~ks~~ei~~a~e~gi~~i~vdS------~~El~~l~~~a~~~~~~v~l 146 (394)
T COG0019 92 AGFPPERIVFSGPAKSEEEIAFALELGIKLINVDS------EEELERLSAIAPGLVARVSL 146 (394)
T ss_pred cCCChhhEEECCCCCCHHHHHHHHHcCCcEEEeCC------HHHHHHHHHhccccCceEEE
Confidence 35555689999888899999999999997 88874 3445444444443 35554
No 376
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=21.36 E-value=3.5e+02 Score=23.31 Aligned_cols=55 Identities=16% Similarity=0.310 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhc---CCceEEeccc-------------hHHHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHH
Q 025333 56 VFRQQLELAKEL---KRPASIHCVR-------------AFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSK 113 (254)
Q Consensus 56 vf~~ql~lA~~~---~lPvilH~~~-------------a~~~~l~il~~~~~~~~~~IiH~fsg~~e~~~~~l~ 113 (254)
-|+..|+++... +.++.|-... ..+.+++++++++. ..++++.+|+ ++.++.+.+
T Consensus 111 tL~evl~~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~v~~~l~~~~~-~~~v~~~Sf~--~~~l~~~~~ 181 (263)
T cd08567 111 TLEEVFALVEKYGNQKVRFNIETKSDPDRDILHPPPEEFVDAVLAVIRKAGL-EDRVVLQSFD--WRTLQEVRR 181 (263)
T ss_pred CHHHHHHHHHHhccCCceEEEEEcCCCCccccCccHHHHHHHHHHHHHHcCC-CCceEEEeCC--HHHHHHHHH
Confidence 478888888876 4667775542 12577888888875 3578999995 566666654
No 377
>cd01303 GDEase Guanine deaminase (GDEase). Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool.
Probab=21.30 E-value=7e+02 Score=23.54 Aligned_cols=59 Identities=17% Similarity=0.214 Sum_probs=40.9
Q ss_pred HHHHHhcCC----ceEEeccchHHHHHHHHHhcCCCCCcEEEEeCCCC------HHHHHHHHHCCcEEeeccc
Q 025333 61 LELAKELKR----PASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGS------AEMVPELSKLGAYFSFSGF 123 (254)
Q Consensus 61 l~lA~~~~l----PvilH~~~a~~~~l~il~~~~~~~~~~IiH~fsg~------~e~~~~~l~~G~y~s~~~~ 123 (254)
++...++|+ .+..||....++.++++++.+. .|.||-+.+ ...++++++.|+-++++..
T Consensus 250 ~~~l~~~G~l~~~~~l~H~~~l~~~~~~~l~~~g~----~v~~~P~sn~~l~~g~~~~~~~~~~Gv~v~lGtD 318 (429)
T cd01303 250 LDVYDKYGLLTEKTVLAHCVHLSEEEFNLLKERGA----SVAHCPTSNLFLGSGLFDVRKLLDAGIKVGLGTD 318 (429)
T ss_pred HHHHHHCCCCCCCcEEEeCCCCCHHHHHHHHHcCC----EEEECccchhhhccCCCCHHHHHHCCCeEEEecc
Confidence 455556554 5789999988888999988753 356765322 2345678888988888753
No 378
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=21.21 E-value=6e+02 Score=22.74 Aligned_cols=69 Identities=17% Similarity=0.020 Sum_probs=43.8
Q ss_pred CChhHHHHHHHHhhcCCc---eEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccchHHHHHHHHHh
Q 025333 14 RTPNWFSTLKEFFEITPA---AAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKS 88 (254)
Q Consensus 14 ~~~~~l~~l~~ll~~~~~---~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a~~~~l~il~~ 88 (254)
.+.+.+..+-+++.+..+ +..|-+|==+. .+.+..+++++..++.+. -++||+.|+..+..+.+++.+.
T Consensus 23 iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~-----Lt~eEr~~v~~~~~~~~~-g~~pvi~gv~~~t~~ai~~a~~ 94 (296)
T TIGR03249 23 FDEAAYRENIEWLLGYGLEALFAAGGTGEFFS-----LTPAEYEQVVEIAVSTAK-GKVPVYTGVGGNTSDAIEIARL 94 (296)
T ss_pred cCHHHHHHHHHHHHhcCCCEEEECCCCcCccc-----CCHHHHHHHHHHHHHHhC-CCCcEEEecCccHHHHHHHHHH
Confidence 344445555555544433 34455554332 356788888888888754 4799999988767777766654
No 379
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=21.17 E-value=5.7e+02 Score=22.48 Aligned_cols=80 Identities=14% Similarity=0.181 Sum_probs=46.4
Q ss_pred eEEeccch--HHHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHC-------CcEEeeccccccc-chHHHHHHHHhCC
Q 025333 71 ASIHCVRA--FGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKL-------GAYFSFSGFLMSM-KAQKAKKMLKVVP 140 (254)
Q Consensus 71 vilH~~~a--~~~~l~il~~~~~~~~~~IiH~fsg~~e~~~~~l~~-------G~y~s~~~~~~~~-~~~~~~~~l~~ip 140 (254)
+++|.... ..++++.+++.|. ..++.=+...+.+.++.+++. -+..||+|.--.. .-++++++-+.++
T Consensus 88 It~H~E~~~~~~r~i~~Ik~~G~--kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~ 165 (220)
T COG0036 88 ITFHAEATEHIHRTIQLIKELGV--KAGLVLNPATPLEALEPVLDDVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMID 165 (220)
T ss_pred EEEEeccCcCHHHHHHHHHHcCC--eEEEEECCCCCHHHHHHHHhhCCEEEEEeECCCCcccccCHHHHHHHHHHHHHhc
Confidence 66777732 4566777777764 224555556677788877763 4667777752110 1133443333332
Q ss_pred -CCcEEEecCCCC
Q 025333 141 -SERILLETDAPD 152 (254)
Q Consensus 141 -~driLlETD~P~ 152 (254)
...+++|-|+--
T Consensus 166 ~~~~~~IeVDGGI 178 (220)
T COG0036 166 ERLDILIEVDGGI 178 (220)
T ss_pred ccCCeEEEEeCCc
Confidence 228999999964
No 380
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=20.97 E-value=2e+02 Score=24.54 Aligned_cols=52 Identities=25% Similarity=0.194 Sum_probs=29.9
Q ss_pred HHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccc
Q 025333 18 WFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVR 77 (254)
Q Consensus 18 ~l~~l~~ll~~~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~ 77 (254)
.+..++++... .+-+| |+=+|+... .....+-+..-.+...+++|+++++|.
T Consensus 12 ~~~~~~~~~~~-~~D~v-ElRlD~l~~------~~~~~~~~~l~~lr~~~~~piI~T~R~ 63 (224)
T PF01487_consen 12 LLAELEEAESS-GADAV-ELRLDYLEN------DSAEDISEQLAELRRSLDLPIIFTVRT 63 (224)
T ss_dssp HHHHHHHHHHT-TTSEE-EEEGGGSTT------TSHHHHHHHHHHHHHHCTSEEEEE--B
T ss_pred HHHHHHHHHhc-CCCEE-EEEeccccc------cChHHHHHHHHHHHHhCCCCEEEEecc
Confidence 34555555442 45677 999999852 112233333334445579999999994
No 381
>PRK07328 histidinol-phosphatase; Provisional
Probab=20.95 E-value=5.8e+02 Score=22.43 Aligned_cols=109 Identities=12% Similarity=0.097 Sum_probs=65.1
Q ss_pred HHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccchHHHHHHHHHhcCCCCCcEE
Q 025333 18 WFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVI 97 (254)
Q Consensus 18 ~l~~l~~ll~~~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a~~~~l~il~~~~~~~~~~I 97 (254)
.++.+.+.++.+.+..||=.++-..+. .. +.......+++.++.|.+.|+++=|=+.. +++ + .
T Consensus 142 Y~~~~~~~~~~~~~dvlgH~d~i~~~~-~~-~~~~~~~~~~~il~~~~~~g~~lEiNt~~--------~r~-~------~ 204 (269)
T PRK07328 142 YFALVEQAARSGLFDIIGHPDLIKKFG-HR-PREDLTELYEEALDVIAAAGLALEVNTAG--------LRK-P------V 204 (269)
T ss_pred HHHHHHHHHHcCCCCEeeCccHHHHcC-CC-CchhHHHHHHHHHHHHHHcCCEEEEEchh--------hcC-C------C
Confidence 344566667767788898888643221 11 12234467899999999999998877742 111 0 0
Q ss_pred EEeCCCCHHHHHHHHHCCcEEeeccccccc-----chHHHHHHHHhCCCCcE
Q 025333 98 IHSYLGSAEMVPELSKLGAYFSFSGFLMSM-----KAQKAKKMLKVVPSERI 144 (254)
Q Consensus 98 iH~fsg~~e~~~~~l~~G~y~s~~~~~~~~-----~~~~~~~~l~~ip~dri 144 (254)
-+.| -+.+.++.+.+.|+-|+++...... .-++..++++..+...+
T Consensus 205 ~~~y-p~~~il~~~~~~g~~itigSDAH~~~~vg~~~~~a~~~l~~~G~~~~ 255 (269)
T PRK07328 205 GEIY-PSPALLRACRERGIPVVLGSDAHRPEEVGFGFAEALALLKEVGYTET 255 (269)
T ss_pred CCCC-CCHHHHHHHHHcCCCEEEeCCCCCHHHHhccHHHHHHHHHHcCCcEE
Confidence 0112 1355666677777777777653321 23446677778777666
No 382
>cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=20.94 E-value=4.2e+02 Score=24.41 Aligned_cols=63 Identities=21% Similarity=0.169 Sum_probs=40.7
Q ss_pred HHHHHHHHHhcCCc-eEEeccchHHHHHHHHHhcCCCCCcEEE---EeCC-------CCHHHHHHHHHCC-cEEeeccc
Q 025333 57 FRQQLELAKELKRP-ASIHCVRAFGDLLEIMKSVGPFPDGVII---HSYL-------GSAEMVPELSKLG-AYFSFSGF 123 (254)
Q Consensus 57 f~~ql~lA~~~~lP-vilH~~~a~~~~l~il~~~~~~~~~~Ii---H~fs-------g~~e~~~~~l~~G-~y~s~~~~ 123 (254)
.+..+++++++++. ++.|+..+ .++++.|++.+. .+++ ..+. .....+..+.+.| +-++++..
T Consensus 205 i~~~l~~~~e~g~~~~i~H~~~~-~~~~~~la~~gv---~v~~~P~~~~~~~~~~~~~~~~~~~~l~~aGGv~valgsD 279 (359)
T cd01309 205 ILTAIRIAKEFGIKITIEHGAEG-YKLADELAKHGI---PVIYGPTLTLPKKVEEVNDAIDTNAYLLKKGGVAFAISSD 279 (359)
T ss_pred HHHHHHHHHHcCCCEEEECchhH-HHHHHHHHHcCC---CEEECccccccccHHHhhcchhhHHHHHHcCCceEEEECC
Confidence 56677888999987 66799887 667788887653 1222 1111 1233455667787 88888754
No 383
>cd06842 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA. This subfamily is composed of the hypothetical Rhizobium sp. protein Y4yA and similar uncharacterized bacterial proteins. These proteins are homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarboxylases.
Probab=20.94 E-value=4.3e+02 Score=25.10 Aligned_cols=13 Identities=15% Similarity=0.090 Sum_probs=7.0
Q ss_pred CHHHHHHHHHCCc
Q 025333 104 SAEMVPELSKLGA 116 (254)
Q Consensus 104 ~~e~~~~~l~~G~ 116 (254)
+..+++.+++.|+
T Consensus 67 S~~E~~~~~~~G~ 79 (423)
T cd06842 67 SLAELRQALAAGV 79 (423)
T ss_pred CHHHHHHHHHCCC
Confidence 4555555555554
No 384
>PRK06038 N-ethylammeline chlorohydrolase; Provisional
Probab=20.75 E-value=7.2e+02 Score=23.44 Aligned_cols=50 Identities=24% Similarity=0.321 Sum_probs=35.3
Q ss_pred ceEEeccchHHHHHHHHHhcCCCCCcEEEEeCCCC------HHHHHHHHHCCcEEeeccc
Q 025333 70 PASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGS------AEMVPELSKLGAYFSFSGF 123 (254)
Q Consensus 70 PvilH~~~a~~~~l~il~~~~~~~~~~IiH~fsg~------~e~~~~~l~~G~y~s~~~~ 123 (254)
.++.||....++-++++++.+. .+.||-..+ ..-++++++.|+-++++..
T Consensus 242 ~~~~H~~~l~~~~~~~la~~g~----~v~~~P~~n~~~~~~~~p~~~~~~~Gv~v~lGtD 297 (430)
T PRK06038 242 VLAAHCVWLSDGDIEILRERGV----NVSHNPVSNMKLASGIAPVPKLLERGVNVSLGTD 297 (430)
T ss_pred eEEEEEecCCHHHHHHHHhcCC----EEEEChHHhhhhccCCCCHHHHHHCCCeEEEeCC
Confidence 4669999988878888988763 356764321 2345788888988888754
No 385
>PRK06886 hypothetical protein; Validated
Probab=20.74 E-value=6.7e+02 Score=23.14 Aligned_cols=110 Identities=9% Similarity=-0.058 Sum_probs=57.9
Q ss_pred eeccccccc---cCChhHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccch--
Q 025333 4 VCFIFRFVQ---ERTPNWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRA-- 78 (254)
Q Consensus 4 ~G~HP~~~~---~~~~~~l~~l~~ll~~~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a-- 78 (254)
+|=-|+... ..+++.++.+.++.++.. +++|.+-.....+.....+.+.+...-..-.+..+..||...
T Consensus 146 vGGiP~~~~~~~~~~~e~l~~~~~lA~~~g------~~Id~Hlde~~~~~~~~le~l~~~~~~~Gl~grV~~sH~~~L~~ 219 (329)
T PRK06886 146 IGGLPYRDELDYGRGLEAMDILLDTAKSLG------KMVHVHVDQFNTPKEKETEQLCDKTIEHGMQGRVVAIHGISIGA 219 (329)
T ss_pred EeCccCCcCCCCCCCHHHHHHHHHHHHHcC------CCeEEeECCCCchhHHHHHHHHHHHHHcCCCCCEEEEEeccccC
Confidence 433376632 345677888888877643 222332110001112222222221111112355677899963
Q ss_pred -----HHHHHHHHHhcCCCCCcEEEEeCCC---------------CHHHHHHHHHCCcEEeeccc
Q 025333 79 -----FGDLLEIMKSVGPFPDGVIIHSYLG---------------SAEMVPELSKLGAYFSFSGF 123 (254)
Q Consensus 79 -----~~~~l~il~~~~~~~~~~IiH~fsg---------------~~e~~~~~l~~G~y~s~~~~ 123 (254)
..+++++|.+.+. .|+|+-.. ...-+.++++.|+-++++..
T Consensus 220 ~~~~~~~~~i~~La~agi----~Vv~~P~snl~l~~~~~~~p~~rGv~pv~eL~~aGV~V~lGtD 280 (329)
T PRK06886 220 HSKEYRYRLYQKMREADM----MVIACPMAWIDSNRKEDLMPFHNALTPADEMIPEGITVALGTD 280 (329)
T ss_pred cChhhHHHHHHHHHHcCC----eEEECchhhhhhccccccCcCCCCCCCHHHHHHCCCeEEEecC
Confidence 2457888888763 36665421 12345788889988888753
No 386
>PRK15447 putative protease; Provisional
Probab=20.71 E-value=6.4e+02 Score=22.83 Aligned_cols=52 Identities=12% Similarity=0.050 Sum_probs=30.2
Q ss_pred HHHHHHHhhc-C-CceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccc
Q 025333 19 FSTLKEFFEI-T-PAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVR 77 (254)
Q Consensus 19 l~~l~~ll~~-~-~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~ 77 (254)
++.+...+.+ + ..+.+||-....+. . --.+-+.+.++.+++.|+.|.+-++.
T Consensus 17 ~~~~~~~~~~~gaDaVY~g~~~~~~R~-----~--f~~~~l~e~v~~~~~~gkkvyva~p~ 70 (301)
T PRK15447 17 VRDFYQRAADSPVDIVYLGETVCSKRR-----E--LKVGDWLELAERLAAAGKEVVLSTLA 70 (301)
T ss_pred HHHHHHHHHcCCCCEEEECCccCCCcc-----C--CCHHHHHHHHHHHHHcCCEEEEEecc
Confidence 4444444433 2 35666654332211 1 22366788889999999888776654
No 387
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=20.63 E-value=3.3e+02 Score=19.46 Aligned_cols=53 Identities=17% Similarity=0.221 Sum_probs=25.6
Q ss_pred hhHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEE
Q 025333 16 PNWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASI 73 (254)
Q Consensus 16 ~~~l~~l~~ll~~~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvil 73 (254)
...++.+.+++++.++.+|| ||....-.+. .....+ .-|... +.+.+++||.+
T Consensus 37 ~~~~~~l~~~i~~~~~~~i~-Ig~pg~v~g~-~~~~~~-~~l~~~--l~~~~~~pv~~ 89 (99)
T smart00732 37 EADAARLKKLIKKYQPDLIV-IGLPLNMNGT-ASRETE-EAFAEL--LKERFNLPVVL 89 (99)
T ss_pred chHHHHHHHHHHHhCCCEEE-EeCCcCCCCC-cCHHHH-HHHHHH--HHHhhCCcEEE
Confidence 34577777777765554555 5544332211 111122 222222 23456788765
No 388
>cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases. Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric.
Probab=20.60 E-value=4.5e+02 Score=23.82 Aligned_cols=61 Identities=15% Similarity=0.086 Sum_probs=39.6
Q ss_pred HHHHHHHhcCC---ceEEeccchH-------HHHHHHHHhcCCCCCcEEEEeCCCC---------------HHHHHHHHH
Q 025333 59 QQLELAKELKR---PASIHCVRAF-------GDLLEIMKSVGPFPDGVIIHSYLGS---------------AEMVPELSK 113 (254)
Q Consensus 59 ~ql~lA~~~~l---PvilH~~~a~-------~~~l~il~~~~~~~~~~IiH~fsg~---------------~e~~~~~l~ 113 (254)
..++.+.+.+. -.+.|+.... .+.++.+++.+. .+.||...+ ...++.+++
T Consensus 222 ~~~~~~~~~g~~~~~~i~H~~~~~~~~~~~~~~~~~~l~~~g~----~v~~~p~s~~~l~~~~~~~~~~~~~~~~~~~~~ 297 (398)
T cd01293 222 ELAEEAERRGMQGRVTCSHATALGSLPEAEVSRLADLLAEAGI----SVVSLPPINLYLQGREDTTPKRRGVTPVKELRA 297 (398)
T ss_pred HHHHHHHHhCCCCCEEeeecchhhcCCHHHHHHHHHHHHHcCC----eEEeCCCcchhhcccccCCCCCCCCCcHHHHHH
Confidence 44556666664 4678997543 256788877653 466765432 345678888
Q ss_pred CCcEEeeccc
Q 025333 114 LGAYFSFSGF 123 (254)
Q Consensus 114 ~G~y~s~~~~ 123 (254)
.|+-++++..
T Consensus 298 ~Gv~v~lGTD 307 (398)
T cd01293 298 AGVNVALGSD 307 (398)
T ss_pred CCCeEEECCC
Confidence 9999988754
No 389
>cd08559 GDPD_periplasmic_GlpQ_like Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. In E. coli, there are two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI),
Probab=20.59 E-value=4.3e+02 Score=23.71 Aligned_cols=57 Identities=26% Similarity=0.301 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhc------CCceEEeccch----------HHHHHHHHHhcCCC--CCcEEEEeCCCCHHHHHHHHH
Q 025333 55 GVFRQQLELAKEL------KRPASIHCVRA----------FGDLLEIMKSVGPF--PDGVIIHSYLGSAEMVPELSK 113 (254)
Q Consensus 55 ~vf~~ql~lA~~~------~lPvilH~~~a----------~~~~l~il~~~~~~--~~~~IiH~fsg~~e~~~~~l~ 113 (254)
--|+..|+++..+ +..+.|-.... .+.+++++++++.. ..++++.+|+ .+.++.+.+
T Consensus 109 ptL~evl~~~~~~~~~~~~~~~l~IEiK~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~v~i~SF~--~~~L~~~r~ 183 (296)
T cd08559 109 PTLEEVIELAQGLNKSTGRNVGIYPETKHPTFHKQEGPDIEEKLLEVLKKYGYTGKNDPVFIQSFE--PESLKRLRN 183 (296)
T ss_pred CCHHHHHHHHHhhhhccCCcceEEEEecChhhhhhcCCCHHHHHHHHHHHcCCCCCCCCEEEecCC--HHHHHHHHH
Confidence 4567777777664 56677766542 35688899888743 2578999995 566666654
No 390
>PRK15108 biotin synthase; Provisional
Probab=20.51 E-value=5e+02 Score=24.04 Aligned_cols=71 Identities=10% Similarity=0.128 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHhcCCceEEeccchHHHHHHHHHhcCCC-------CC-----cEE-EEeCCCCHHHHHHHHHCCcEEe
Q 025333 53 QVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPF-------PD-----GVI-IHSYLGSAEMVPELSKLGAYFS 119 (254)
Q Consensus 53 Q~~vf~~ql~lA~~~~lPvilH~~~a~~~~l~il~~~~~~-------~~-----~~I-iH~fsg~~e~~~~~l~~G~y~s 119 (254)
-.+.+...++.+++.++.++++......+.++.|++.|.. .. +++ -|.|..-.+.++.+.+.|+.++
T Consensus 109 ~~e~i~~~i~~ik~~~i~v~~s~G~ls~e~l~~LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~ 188 (345)
T PRK15108 109 DMPYLEQMVQGVKAMGLETCMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVC 188 (345)
T ss_pred hHHHHHHHHHHHHhCCCEEEEeCCcCCHHHHHHHHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCcee
Confidence 3457777778788888888877766668888888887753 10 111 1333333455556666788776
Q ss_pred eccc
Q 025333 120 FSGF 123 (254)
Q Consensus 120 ~~~~ 123 (254)
.++.
T Consensus 189 sg~i 192 (345)
T PRK15108 189 SGGI 192 (345)
T ss_pred eEEE
Confidence 5543
No 391
>PRK09045 N-ethylammeline chlorohydrolase; Provisional
Probab=20.50 E-value=7.3e+02 Score=23.43 Aligned_cols=50 Identities=12% Similarity=0.148 Sum_probs=35.0
Q ss_pred ceEEeccchHHHHHHHHHhcCCCCCcEEEEeCCC------CHHHHHHHHHCCcEEeeccc
Q 025333 70 PASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLG------SAEMVPELSKLGAYFSFSGF 123 (254)
Q Consensus 70 PvilH~~~a~~~~l~il~~~~~~~~~~IiH~fsg------~~e~~~~~l~~G~y~s~~~~ 123 (254)
.++.||....++-++.+++.+. .+.||-+. ...-++.+++.|+-++++..
T Consensus 254 ~~~~H~~~l~~~~~~~la~~g~----~i~~~P~~~~~~~~~~~~~~~l~~~Gv~v~lGtD 309 (443)
T PRK09045 254 LIAVHMTQLTDAEIALLAETGC----SVVHCPESNLKLASGFCPVAKLLQAGVNVALGTD 309 (443)
T ss_pred eEEEEecCCCHHHHHHHHHcCC----eEEECHHHHhhhccCCCcHHHHHHCCCeEEEecC
Confidence 3567999988888888887753 35676532 13346788888998888753
No 392
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=20.47 E-value=5.5e+02 Score=22.00 Aligned_cols=125 Identities=13% Similarity=0.019 Sum_probs=58.0
Q ss_pred ChhHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhc--CCceEEeccchHHHHHHHHHhcCCC
Q 025333 15 TPNWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKEL--KRPASIHCVRAFGDLLEIMKSVGPF 92 (254)
Q Consensus 15 ~~~~l~~l~~ll~~~~~~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~--~lPvilH~~~a~~~~l~il~~~~~~ 92 (254)
+.+...++.+.+.+..+-.| |+|-.-..... .|.+-....++.+.+. +.++...++.. .+.++.+.+.+..
T Consensus 17 s~e~~~~i~~~L~~~GV~~I-Evg~~~~~~~~-----p~~~~~~~~i~~l~~~~~~~~~~~l~~~~-~~~i~~a~~~g~~ 89 (265)
T cd03174 17 STEDKLEIAEALDEAGVDSI-EVGSGASPKAV-----PQMEDDWEVLRAIRKLVPNVKLQALVRNR-EKGIERALEAGVD 89 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEE-EeccCcCcccc-----ccCCCHHHHHHHHHhccCCcEEEEEccCc-hhhHHHHHhCCcC
Confidence 33344444444444445555 77765432100 1222223333333333 47887888765 4556666666542
Q ss_pred CCcEEEEeC---------CC---CHHHHH----HHHHCCcEEeeccc-ccc--cchHH---HHHHHHhCCCCcEEE
Q 025333 93 PDGVIIHSY---------LG---SAEMVP----ELSKLGAYFSFSGF-LMS--MKAQK---AKKMLKVVPSERILL 146 (254)
Q Consensus 93 ~~~~IiH~f---------sg---~~e~~~----~~l~~G~y~s~~~~-~~~--~~~~~---~~~~l~~ip~driLl 146 (254)
..++.+..- .+ ..+.+. .+.+.|+.+.++.. ++. .+.+. +-+.+.+.+.++|-+
T Consensus 90 ~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l 165 (265)
T cd03174 90 EVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISL 165 (265)
T ss_pred EEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 222222211 00 122232 33456887777652 222 22333 334455678888776
No 393
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=20.41 E-value=1.7e+02 Score=24.86 Aligned_cols=72 Identities=18% Similarity=0.159 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHHHHHhcCCceEEeccchHHHHHHHHHhcCCCCCcE--EEEeCCCCHHH-HHHHHHCCc-EEeec
Q 025333 49 DFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGV--IIHSYLGSAEM-VPELSKLGA-YFSFS 121 (254)
Q Consensus 49 ~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a~~~~l~il~~~~~~~~~~--IiH~fsg~~e~-~~~~l~~G~-y~s~~ 121 (254)
|.+.-.+-++.+.++|.++++||+.-- -..++.++.++.....|.++ ...||.--.+. ++.+.+.|+ +||.+
T Consensus 36 P~~Ey~~R~~~~~~~~~~~~i~~i~~~-Y~~~~w~~~v~~~e~epE~g~RC~~Cy~~RL~~tA~~A~e~gfd~FtTT 111 (176)
T PF02677_consen 36 PYEEYERRLEELKRFAEKLGIPLIEGD-YDPEEWLRAVKGLEDEPEGGKRCRVCYDLRLEKTAQYAKELGFDYFTTT 111 (176)
T ss_pred cHHHHHHHHHHHHHHHHHcCCCEEecC-CCHHHHHHHHhhCccCCccCchhHHHHHHHHHHHHHHHHHcCCCEEEcc
Confidence 566677778899999999999999876 55677777666554333322 34677543333 344455665 55554
No 394
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=20.41 E-value=6.6e+02 Score=22.93 Aligned_cols=92 Identities=11% Similarity=0.220 Sum_probs=58.1
Q ss_pred HHHHHHHHHHH-hcCCceEEeccch-------HHHHHHHHHhcCCCCCcEEEEeCC--------CCHHHHHHHHH-CCcE
Q 025333 55 GVFRQQLELAK-ELKRPASIHCVRA-------FGDLLEIMKSVGPFPDGVIIHSYL--------GSAEMVPELSK-LGAY 117 (254)
Q Consensus 55 ~vf~~ql~lA~-~~~lPvilH~~~a-------~~~~l~il~~~~~~~~~~IiH~fs--------g~~e~~~~~l~-~G~y 117 (254)
+...+.++..+ ..++||.+-.|.. ..++++.+.+.|. ..+.+|+-+ .+++.+.++.+ .++=
T Consensus 119 ~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~G~--d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iP 196 (321)
T PRK10415 119 DLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGI--QALTIHGRTRACLFNGEAEYDSIRAVKQKVSIP 196 (321)
T ss_pred HHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHhCC--CEEEEecCccccccCCCcChHHHHHHHHhcCCc
Confidence 44445554443 3689999888643 2345566666664 345678543 34666666655 3554
Q ss_pred EeecccccccchHHHHHHHHhCCCCcEEEecCC
Q 025333 118 FSFSGFLMSMKAQKAKKMLKVVPSERILLETDA 150 (254)
Q Consensus 118 ~s~~~~~~~~~~~~~~~~l~~ip~driLlETD~ 150 (254)
+-.+|.+. +.+.+.++++..+.|-+++.+=.
T Consensus 197 VI~nGgI~--s~~da~~~l~~~gadgVmiGR~~ 227 (321)
T PRK10415 197 VIANGDIT--DPLKARAVLDYTGADALMIGRAA 227 (321)
T ss_pred EEEeCCCC--CHHHHHHHHhccCCCEEEEChHh
Confidence 55556554 45778889988889999998755
No 395
>PRK06687 chlorohydrolase; Validated
Probab=20.33 E-value=3e+02 Score=25.74 Aligned_cols=50 Identities=18% Similarity=0.130 Sum_probs=35.9
Q ss_pred ceEEeccchHHHHHHHHHhcCCCCCcEEEEeCCCC------HHHHHHHHHCCcEEeeccc
Q 025333 70 PASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGS------AEMVPELSKLGAYFSFSGF 123 (254)
Q Consensus 70 PvilH~~~a~~~~l~il~~~~~~~~~~IiH~fsg~------~e~~~~~l~~G~y~s~~~~ 123 (254)
.++.||....++-++++++.+. .+.||-..+ ..-++++++.|+-++++..
T Consensus 248 ~~~~H~~~~~~~~~~~la~~g~----~v~~~P~sn~~l~~g~~p~~~~~~~Gv~v~lGtD 303 (419)
T PRK06687 248 SVFAHGVELNEREIERLASSQV----AIAHNPISNLKLASGIAPIIQLQKAGVAVGIATD 303 (419)
T ss_pred eEEEEEecCCHHHHHHHHHcCC----eEEECcHHhhhhccCCCcHHHHHHCCCeEEEeCC
Confidence 3678999988888899988753 466764322 2245778889999999864
No 396
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=20.31 E-value=7.2e+02 Score=23.32 Aligned_cols=91 Identities=12% Similarity=0.091 Sum_probs=49.9
Q ss_pred HHHHHHHhcCCceEEeccc--hHHH---HHHHHHhcCCCCCcEEEE-eCCC---------CHHHHHHHHH-CCcEEeecc
Q 025333 59 QQLELAKELKRPASIHCVR--AFGD---LLEIMKSVGPFPDGVIIH-SYLG---------SAEMVPELSK-LGAYFSFSG 122 (254)
Q Consensus 59 ~ql~lA~~~~lPvilH~~~--a~~~---~l~il~~~~~~~~~~IiH-~fsg---------~~e~~~~~l~-~G~y~s~~~ 122 (254)
..|+.+.+.|+||+|=... ..++ .++.+.+.|.. .-++.| |.+. +...+..+.+ .|+=+++..
T Consensus 216 ~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~-~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~~~~PV~~d~ 294 (360)
T PRK12595 216 ELLKAAGRVNKPVLLKRGLSATIEEFIYAAEYIMSQGNG-QIILCERGIRTYEKATRNTLDISAVPILKQETHLPVMVDV 294 (360)
T ss_pred HHHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHHCCCC-CEEEECCccCCCCCCCCCCcCHHHHHHHHHHhCCCEEEeC
Confidence 4566677899999998885 3444 45666666642 224457 6553 2223333333 355455522
Q ss_pred cc-cccchHH--HHHHHHhCCCCcEEEecCC
Q 025333 123 FL-MSMKAQK--AKKMLKVVPSERILLETDA 150 (254)
Q Consensus 123 ~~-~~~~~~~--~~~~l~~ip~driLlETD~ 150 (254)
.- ...+.-. +..+.-.++.|=+++|+=.
T Consensus 295 ~Hs~G~r~~~~~~a~aAva~GAdg~~iE~H~ 325 (360)
T PRK12595 295 THSTGRRDLLLPTAKAALAIGADGVMAEVHP 325 (360)
T ss_pred CCCCcchhhHHHHHHHHHHcCCCeEEEEecC
Confidence 11 1111111 2233446788989999865
No 397
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=20.26 E-value=1.7e+02 Score=25.65 Aligned_cols=48 Identities=17% Similarity=0.228 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHhcCCceEEeccc--------hHHHHHHHHHhcC-CCCCcEEE
Q 025333 51 MDQVGVFRQQLELAKELKRPASIHCVR--------AFGDLLEIMKSVG-PFPDGVII 98 (254)
Q Consensus 51 ~~Q~~vf~~ql~lA~~~~lPvilH~~~--------a~~~~l~il~~~~-~~~~~~Ii 98 (254)
+.-.+.+++..++|+++|..|.|+... ...++.+++++.+ ....++++
T Consensus 119 ~~~~~~l~~l~~~a~~~gi~l~lEn~~~~~~~~~~t~~~~~~li~~v~~~~~~g~~l 175 (279)
T cd00019 119 KRVIEALNELIDKAETKGVVIALETMAGQGNEIGSSFEELKEIIDLIKEKPRVGVCI 175 (279)
T ss_pred HHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCCCeEEEE
Confidence 445577888888888999999998753 3478889999886 43344544
No 398
>COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only]
Probab=20.25 E-value=7.1e+02 Score=23.40 Aligned_cols=107 Identities=18% Similarity=0.207 Sum_probs=59.6
Q ss_pred eeeccccccccCChhHHHHHHHHhhcCC-ceEEEeecCCCCCCCCCCCHHHHHHHHH----HHHHHHHhcC----CceEE
Q 025333 3 WVCFIFRFVQERTPNWFSTLKEFFEITP-AAAVGEIGLDKGSKGREIDFMDQVGVFR----QQLELAKELK----RPASI 73 (254)
Q Consensus 3 ~~G~HP~~~~~~~~~~l~~l~~ll~~~~-~~aIGEiGLD~~~~~~~~~~~~Q~~vf~----~ql~lA~~~~----lPvil 73 (254)
.+|+-|+.....+++.++.+.++.++.. .+-+ |. .+ ..+....+.+ +-++....++ .-+.+
T Consensus 184 ~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~v~i------H~---~E-~~~e~~~~~~~~g~~~~~~~~~~g~l~~~~~~~ 253 (421)
T COG0402 184 VVGLAPHFPYTVSPELLESLDELARKYGLPVHI------HL---AE-TLDEVERVLEPYGARPVERLDLLGLLGSHTLLA 253 (421)
T ss_pred eEEEecCCCCCCCHHHHHHHHHHHhcCCCceEE------Ee---cC-cHHHHHHHHhhcCCCHHHHHHHcCCCCCCeEEE
Confidence 4566677766667777777777766322 1111 11 01 1112222222 2223333333 45889
Q ss_pred eccchHHHHHHHHHhcCCCCCcEEEEeCCCC------HHHHHHHHHCCcEEeeccc
Q 025333 74 HCVRAFGDLLEIMKSVGPFPDGVIIHSYLGS------AEMVPELSKLGAYFSFSGF 123 (254)
Q Consensus 74 H~~~a~~~~l~il~~~~~~~~~~IiH~fsg~------~e~~~~~l~~G~y~s~~~~ 123 (254)
||....+.-++++++.+. .|+||-..+ .--+.+++..|+-++++..
T Consensus 254 H~~~~~~~e~~~l~~~g~----~v~~cP~sN~~L~sG~~p~~~~~~~gv~v~~gTD 305 (421)
T COG0402 254 HCVHLSEEELELLAESGA----SVVHCPRSNLKLGSGIAPVRRLLERGVNVALGTD 305 (421)
T ss_pred EeccCCHHHHHHHhhCCC----eEEECcchhccccCCCCCHHHHHHcCCCEEEecC
Confidence 999988888888886542 477876322 2235677888877766643
No 399
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=20.21 E-value=64 Score=20.53 Aligned_cols=22 Identities=9% Similarity=0.226 Sum_probs=12.5
Q ss_pred HHHHHhccCCCHHHHHHHHHHH
Q 025333 217 LDYVASLLDMTKEELAELSYRN 238 (254)
Q Consensus 217 ~~~lA~i~~~~~eev~~~~~~N 238 (254)
+..||+..|++...|.+.+.+|
T Consensus 24 i~~IA~~~gvsr~TvyR~l~~~ 45 (45)
T PF02796_consen 24 IAEIAKQFGVSRSTVYRYLNKN 45 (45)
T ss_dssp HHHHHHHTTS-HHHHHHHHCC-
T ss_pred HHHHHHHHCcCHHHHHHHHhcC
Confidence 3456666677777776665443
No 400
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=20.03 E-value=5.9e+02 Score=22.78 Aligned_cols=71 Identities=11% Similarity=0.144 Sum_probs=41.5
Q ss_pred HHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCcEEeecccccccchHHHHHHHHhCCCC--cEEEe--cCCCCCC
Q 025333 80 GDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQKAKKMLKVVPSE--RILLE--TDAPDAL 154 (254)
Q Consensus 80 ~~~l~il~~~~~~~~~~IiH~fsg~~e~~~~~l~~G~y~s~~~~~~~~~~~~~~~~l~~ip~d--riLlE--TD~P~~~ 154 (254)
..+++-..+.+. .++++- +++.+.+....+.|+..=++..-.....+++.++++.+++. .+++. -|-|+..
T Consensus 32 ~rV~e~a~~s~~--~rvvVA--TDde~I~~av~~~G~~avmT~~~h~SGTdR~~Ev~~~l~~~~~~iIVNvQGDeP~i~ 106 (247)
T COG1212 32 VRVAERALKSGA--DRVVVA--TDDERIAEAVQAFGGEAVMTSKDHQSGTDRLAEVVEKLGLPDDEIIVNVQGDEPFIE 106 (247)
T ss_pred HHHHHHHHHcCC--CeEEEE--cCCHHHHHHHHHhCCEEEecCCCCCCccHHHHHHHHhcCCCcceEEEEccCCCCCCC
Confidence 334444444443 345654 45677777778888777666432222357788999887543 55554 3555543
No 401
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=20.01 E-value=6.3e+02 Score=22.53 Aligned_cols=68 Identities=13% Similarity=0.044 Sum_probs=44.0
Q ss_pred ChhHHHHHHHHhhcCCc---eEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccchHHHHHHHHHh
Q 025333 15 TPNWFSTLKEFFEITPA---AAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKS 88 (254)
Q Consensus 15 ~~~~l~~l~~ll~~~~~---~aIGEiGLD~~~~~~~~~~~~Q~~vf~~ql~lA~~~~lPvilH~~~a~~~~l~il~~ 88 (254)
+.+.++.+-+++.+..+ +..|-+|==+ ..+.+..+++++..++.+. -++||+.|+...+.+.+++.+.
T Consensus 19 D~~~l~~l~~~l~~~Gv~gi~v~GstGE~~-----~Ls~eEr~~l~~~~~~~~~-~~~pvi~gv~~~t~~~i~~a~~ 89 (289)
T cd00951 19 DEDAYRAHVEWLLSYGAAALFAAGGTGEFF-----SLTPDEYAQVVRAAVEETA-GRVPVLAGAGYGTATAIAYAQA 89 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcCCcCcc-----cCCHHHHHHHHHHHHHHhC-CCCCEEEecCCCHHHHHHHHHH
Confidence 44455655555544433 3445444322 2356788888888888764 4799999998777777776664
Done!