RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 025333
(254 letters)
>2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens}
Length = 301
Score = 141 bits (358), Expect = 5e-41
Identities = 55/214 (25%), Positives = 95/214 (44%), Gaps = 32/214 (14%)
Query: 33 AVGEIGLD---KGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSV 89
A+GE GLD ++ Q+ F +Q EL+++ K P +HC + + L+I K
Sbjct: 106 AIGECGLDFDRLQFCPKDT----QLKYFEKQFELSEQTKLPMFLHCRNSHAEFLDITKRN 161
Query: 90 GPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQKAKKMLKVVPSERILLETD 149
G ++HS+ G+ E L L Y F+G S+K + ++LK +PSE++++ETD
Sbjct: 162 RDRCVGGVVHSFDGTKEAAAALIDLDLYIGFNG--CSLKTEANLEVLKSIPSEKLMIETD 219
Query: 150 APDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNH 209
AP + + A ++ K S + N
Sbjct: 220 AP-----------WC------GVKSTHAGSKY------IRTAFPTKKKWESGHCLKDRNE 256
Query: 210 PANIHNVLDYVASLLDMTKEELAELSYRNAIRLF 243
P +I +L+ ++++ D ELA Y N I++F
Sbjct: 257 PCHIIQILEIMSAVRDEDPLELANTLYNNTIKVF 290
>3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida}
Length = 287
Score = 138 bits (349), Expect = 8e-40
Identities = 53/236 (22%), Positives = 82/236 (34%), Gaps = 48/236 (20%)
Query: 11 VQERTPNWFSTLKEFFEITPAAAVGEIGLD--KGSKGREIDFMDQVGVFRQQLELAKELK 68
+ + L+ AVGE GLD + R + Q QL LA +L+
Sbjct: 72 AKAWDTDSERQLRLLLSEPRVRAVGECGLDFNRDFSPRPL----QEKALEAQLTLAAQLR 127
Query: 69 RPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMK 128
P +H A LL I+K G ++H + G E + L + +G++ +
Sbjct: 128 LPVFLHERDASERLLAILKDYRDHLTGAVVHCFTGEREALFAYLDLDLHIGITGWICDER 187
Query: 129 -AQKAKKMLKVVPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGS 187
++ +P R++LE+DAP +L LP+ L K
Sbjct: 188 RGTHLHPLVGNIPEGRLMLESDAP-----------YL------LPRSLRPK--------- 221
Query: 188 ASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLF 243
PK N PA + VL VA + E A + A F
Sbjct: 222 ---------------PKSGRNEPAFLPEVLREVALHRGESAEHTAAHTTATARDFF 262
>1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION,
structural genomics, PSI, protein structure initiative;
2.00A {Escherichia coli} SCOP: c.1.9.12
Length = 264
Score = 135 bits (343), Expect = 4e-39
Identities = 49/214 (22%), Positives = 87/214 (40%), Gaps = 48/214 (22%)
Query: 33 AVGEIGLD--KGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVG 90
A+GE GLD + E Q F QL +A +L P +HC A + +++
Sbjct: 92 AIGECGLDFNRNFSTPEE----QERAFVAQLRIAADLNMPVFMHCRDAHERFMTLLEPWL 147
Query: 91 PFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMK-AQKAKKMLKVVPSERILLETD 149
G ++H + G+ E + G Y +G++ + + +++L ++P+E++L+ETD
Sbjct: 148 DKLPGAVLHCFTGTREEMQACVAHGIYIGITGWVCDERRGLELRELLPLIPAEKLLIETD 207
Query: 150 APDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNH 209
AP +L LP++L+ K P N
Sbjct: 208 AP-----------YL------LPRDLTPK------------------------PSSRRNE 226
Query: 210 PANIHNVLDYVASLLDMTKEELAELSYRNAIRLF 243
PA++ ++L +A LA + N LF
Sbjct: 227 PAHLPHILQRIAHWRGEDAAWLAATTDANVKTLF 260
>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural
genomics center for infect disease, dysentery, liver
abcess; 1.95A {Entamoeba histolytica hm-1}
Length = 325
Score = 135 bits (342), Expect = 2e-38
Identities = 45/216 (20%), Positives = 89/216 (41%), Gaps = 33/216 (15%)
Query: 33 AVGEIGLD----KGSKGREIDFMDQVGVFRQQLELA-KELKRPASIHCVRAFGDLLEIMK 87
A+GEIGLD + S +E Q+ +R L K P HC +++ DL ++ K
Sbjct: 133 AIGEIGLDYERLQFSD-KET----QLSGYRTLSILHQKYPYLPFFFHCRKSWSDLCQLNK 187
Query: 88 SVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQKAKKMLKVVPSERILLE 147
+G ++H + G+ E + ++ G +G S+++ + ++K +P ER+ +E
Sbjct: 188 ELGYNGCKGVVHCFDGTEEEMNQILNEGWDIGVTGN--SLQSIELLNVMKQIPIERLHIE 245
Query: 148 TDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETL 207
TD P K + KE+ + +
Sbjct: 246 TDCPYCGIK------------KTSAGFKYLKEKDFGVKVEKYQRNKYVQR---------R 284
Query: 208 NHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLF 243
N P+NI ++ ++S+ ++ E Y N++ ++
Sbjct: 285 NEPSNIIDIAIIMSSIKHISLFEFVNKVYSNSMNMY 320
>2y1h_A Putative deoxyribonuclease tatdn3; hydrolase; 2.50A {Homo sapiens}
Length = 272
Score = 132 bits (335), Expect = 7e-38
Identities = 53/244 (21%), Positives = 94/244 (38%), Gaps = 61/244 (25%)
Query: 11 VQERTPNWFSTLKEFFEITPAA--------AVGEIGLD--KGSKGREIDFMDQVGVFRQQ 60
TLK+ P A+GE+GLD G +Q V +Q
Sbjct: 72 GLPPEDQRSVTLKDLDVALPIIENYKDRLLAIGEVGLDFSPRFAGTGEQKEEQRQVLIRQ 131
Query: 61 LELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSF 120
++LAK L P ++H A + +++ G V++H++ G + E + G +FS
Sbjct: 132 IQLAKRLNLPVNVHSRSAGRPTINLLQEQGAE--KVLLHAFDGRPSVAMEGVRAGYFFSI 189
Query: 121 SGFLMSMKAQKAKKMLKVVPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEE 180
+ +++ + +K++K +P I LETD+P L
Sbjct: 190 PPSI--IRSGQKQKLVKQLPLTSICLETDSP-----------AL---------------- 220
Query: 181 HSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAI 240
P N P NI +Y+A + ++ EE+ E++ +NA+
Sbjct: 221 -GPEKQ-----------------VR--NEPWNISISAEYIAQVKGISVEEVIEVTTQNAL 260
Query: 241 RLFS 244
+LF
Sbjct: 261 KLFP 264
>3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein
initiative, NEW YORK SGX research center for structural
GEN nysgxrc; 1.50A {Saccharomyces cerevisiae}
Length = 401
Score = 129 bits (324), Expect = 3e-35
Identities = 48/244 (19%), Positives = 91/244 (37%), Gaps = 42/244 (17%)
Query: 33 AVGEIGLD---KGSKGREIDFMDQVGVFRQQLELA----KELKRPASIHCVRAFGDLLEI 85
++GEIGLD +E+ Q F +QL+++ K P +H A D ++I
Sbjct: 158 SIGEIGLDYDRFHYSSKEM----QKVFFEEQLKISCLNDKLSSYPLFLHMRSACDDFVQI 213
Query: 86 MK--------------------------SVGPFPDGVIIHSYLGSAEMVPELSKLGAYFS 119
++ +++HS+ GSA + +L L
Sbjct: 214 LERFVVGFTDEKDTFQLQKLGASSSSGFYKFHPDRKLVVHSFTGSAIDLQKLLNLSPNIF 273
Query: 120 FSGFLMSMKAQKAKKMLKVVPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKE 179
S++ ++ ++K +P+ER+LLETDAP K S + +
Sbjct: 274 IGVNGCSLRTEENLAVVKQIPTERLLLETDAPWCEIKRTHASFQYLAKYQEVRDFEYPAF 333
Query: 180 EHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNA 239
+ A + + K N P N+ V V+ + D+ L + +++
Sbjct: 334 KSVKKNKLADKLNA----EELYMVKGR-NEPCNMEQVAIVVSEVKDVDLATLIDTTWKTT 388
Query: 240 IRLF 243
++F
Sbjct: 389 CKIF 392
>3gg7_A Uncharacterized metalloprotein; structural genomics, unknown
function, plasmid, PSI-2, protein structure initiative;
1.50A {Deinococcus radiodurans}
Length = 254
Score = 119 bits (301), Expect = 5e-33
Identities = 42/218 (19%), Positives = 74/218 (33%), Gaps = 63/218 (28%)
Query: 33 AVGEIGLD----KGSKGREIDFMDQVGVFRQQLELAKEL-KRPASIHCVRAFGDLLEIMK 87
VGE+GLD + Q VF+ L ++ R SIH RA ++L ++
Sbjct: 83 FVGEVGLDGSPSLRGTWTQ-----QFAVFQHILRRCEDHGGRILSIHSRRAESEVLNCLE 137
Query: 88 SVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSG-FLMSMKAQKAKKMLKVVPSERILL 146
+ I+H Y GS + LG +FS + + QK +++ +P +R+L
Sbjct: 138 ANPR-SGTPILHWYSGSVTELRRAISLGCWFSVGPTMV---RTQKGAALIRSMPRDRVLT 193
Query: 147 ETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKET 206
ET D P L
Sbjct: 194 ET---DG---------------PFLE------------------------------LDGQ 205
Query: 207 LNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFS 244
P ++ +V++ ++ + + E+ + N RL
Sbjct: 206 AALPWDVKSVVEGLSKIWQIPASEVERIVKENVSRLLG 243
>3guw_A Uncharacterized protein AF_1765; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; 3.20A
{Archaeoglobus fulgidus dsm 4304}
Length = 261
Score = 118 bits (299), Expect = 1e-32
Identities = 35/216 (16%), Positives = 70/216 (32%), Gaps = 69/216 (31%)
Query: 33 AVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHC-----VRAFGDLLEIMK 87
A GEIGL+ + +++ V + QLELAK + P IH ++A LEI++
Sbjct: 95 AFGEIGLELVTD-------EEIEVLKSQLELAKRMDVPCIIHTPRGNKLKATRKTLEILE 147
Query: 88 SVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQKAKKMLKVVPSERILLE 147
S+ D +I + E + + + + + + A+ A +++ ER +L
Sbjct: 148 SLDFPADLAVIDHV--NFETLDMVLETEYWIGLTVQPGKLSAEDAARIVAEHGPERFMLN 205
Query: 148 TDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETL 207
+DA
Sbjct: 206 SDA------------------GYRD----------------------------------- 212
Query: 208 NHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLF 243
+ + + +EE+ +++ NA +
Sbjct: 213 VEITTVAEAAVKIEE--AVGREEMEKVARENARKFL 246
>1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural
genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP:
c.1.9.12
Length = 259
Score = 118 bits (298), Expect = 2e-32
Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 9/147 (6%)
Query: 10 FVQERTPNWFSTLKEFFEITPA--AAVGEIGLD--KGSKGREIDFMDQVGVFRQQLELAK 65
+++ + L++ E PA AVGEIGLD E Q + +QL+LAK
Sbjct: 69 MLEKHSDVSLEQLQQALERRPAKVVAVGEIGLDLFGDDPQFER----QQWLLDEQLKLAK 124
Query: 66 ELKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLM 125
P +H R L +K P ++H + GS + +LG G +
Sbjct: 125 RYDLPVILHSRRTHDKLAMHLKRHDL-PRTGVVHGFSGSLQQAERFVQLGYKIGVGGTIT 183
Query: 126 SMKAQKAKKMLKVVPSERILLETDAPD 152
+A K + ++ +P +LLETDAPD
Sbjct: 184 YPRASKTRDVIAKLPLASLLLETDAPD 210
Score = 46.7 bits (112), Expect = 2e-06
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 208 NHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFS 244
N P V + L +E+A+ N LF+
Sbjct: 221 NRPEQAARVFAVLCELRREPADEIAQALLNNTYTLFN 257
>1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG,
PSI, protein structure initiative, joint center for
structural genomics; 1.80A {Thermotoga maritima} SCOP:
c.1.9.12
Length = 268
Score = 117 bits (296), Expect = 5e-32
Identities = 39/143 (27%), Positives = 68/143 (47%), Gaps = 6/143 (4%)
Query: 11 VQERTPNWFSTLKEFFEITPAAAVGEIGLD--KGSKGREIDFMDQVGVFRQQLELAKELK 68
+E ++ L++F + A+GE GLD + E+ Q VF +Q+ELA +L
Sbjct: 78 AKEVPEDFIEHLEKFAKDEKVVAIGETGLDFFRNISPAEV----QKRVFVEQIELAGKLN 133
Query: 69 RPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMK 128
P +H A+ + EI+++ +IH++ E + LG G + K
Sbjct: 134 LPLVVHIRDAYSEAYEILRTESLPEKRGVIHAFSSDYEWAKKFIDLGFLLGIGGPVTYPK 193
Query: 129 AQKAKKMLKVVPSERILLETDAP 151
+ ++++K V E I+LETD P
Sbjct: 194 NEALREVVKRVGLEYIVLETDCP 216
Score = 46.3 bits (111), Expect = 2e-06
Identities = 9/37 (24%), Positives = 21/37 (56%)
Query: 208 NHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFS 244
N P + V++ ++ +L + + ++ E + NA R+F
Sbjct: 228 NEPKYLKYVVETISQVLGVPEAKVDEATTENARRIFL 264
>2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237,
structural GENO PSI, protein structure initiative; 2.20A
{Staphylococcus aureus subsp}
Length = 265
Score = 114 bits (289), Expect = 4e-31
Identities = 47/146 (32%), Positives = 71/146 (48%), Gaps = 11/146 (7%)
Query: 11 VQERTPNWFSTLKEFFEITPAAAVGEIGLD----KGSKGREIDFMDQVGVFRQQLELAKE 66
+ T ++ + +GE+GLD K ++ Q VFR+Q+ LAK
Sbjct: 67 AIDFTEEHLEWIESLAQHPKVIGIGEMGLDYHWDKSP--ADV----QKEVFRKQIALAKR 120
Query: 67 LKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPE-LSKLGAYFSFSGFLM 125
LK P IH A D ++I+ G I+HS+ GS E+ +KL Y S G +
Sbjct: 121 LKLPIIIHNREATQDCIDILLEEHAEEVGGIMHSFSGSPEIADIVTNKLNFYISLGGPVT 180
Query: 126 SMKAQKAKKMLKVVPSERILLETDAP 151
A++ K++ K V ER+L+ETDAP
Sbjct: 181 FKNAKQPKEVAKHVSMERLLVETDAP 206
Score = 46.7 bits (112), Expect = 2e-06
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 208 NHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFS 244
N PA + V + +A L ++ EE+ E + +NA +LF+
Sbjct: 218 NEPARVTLVAEQIAELKGLSYEEVCEQTTKNAEKLFN 254
>1yix_A Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW YORK SGX center
for structural genomics, nysgxrc; 1.90A {Escherichia
coli} SCOP: c.1.9.12
Length = 265
Score = 112 bits (282), Expect = 4e-30
Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 6/121 (4%)
Query: 33 AVGEIGLD--KGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVG 90
A+GE GLD + + Q F +++ +EL +P +H A D L I++
Sbjct: 91 ALGETGLDYYYTPETKVR----QQESFIHHIQIGRELNKPVIVHTRDARADTLAILREEK 146
Query: 91 PFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQKAKKMLKVVPSERILLETDA 150
G ++H + E +L LG Y SFSG + A++ + + VP +R+L+ETD+
Sbjct: 147 VTDCGGVLHCFTEDRETAGKLLDLGFYISFSGIVTFRNAEQLRDAARYVPLDRLLVETDS 206
Query: 151 P 151
P
Sbjct: 207 P 207
Score = 45.6 bits (109), Expect = 5e-06
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 208 NHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEGSKI 250
N PA + +V +Y+A L + EELA+++ N RLF + S++
Sbjct: 219 NQPAMVRDVAEYMAVLKGVAVEELAQVTTDNFARLFHIDASRL 261
>2vc7_A Aryldialkylphosphatase; phosphotriesterase, promiscuous activities,
enzyme evolution, hyperthermophilic, lactonase,
hydrolase; HET: KCX GOL HT5; 2.05A {Sulfolobus
solfataricus} PDB: 2vc5_A*
Length = 314
Score = 53.5 bits (128), Expect = 1e-08
Identities = 25/157 (15%), Positives = 56/157 (35%), Gaps = 17/157 (10%)
Query: 11 VQERTPNWFSTLKEFFEITPA-AAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKR 69
+ E + +KE + T A +I D+ + D V R KE K
Sbjct: 111 IDEIADLFIHDIKEGIQGTLNKAGFVKIAADEPGITK-----DVEKVIRAAAIANKETKV 165
Query: 70 PASIHC---VRAFGDLLEIMKSVGPFPDGVII-HS-YLGSAEMVPELSKLGAYFSFSGFL 124
P H + I+ G P ++I H + + + +++ G++ +
Sbjct: 166 PIITHSNAHNNTGLEQQRILTEEGVDPGKILIGHLGDTDNIDYIKKIADKGSFIGLDRYG 225
Query: 125 M------SMKAQKAKKMLKVVPSERILLETDAPDALP 155
+ + + +++K S++I++ D +
Sbjct: 226 LDLFLPVDKRNETTLRLIKDGYSDKIMISHDYCCTID 262
>1bf6_A Phosphotriesterase homology protein; hypothetical protein; 1.70A
{Escherichia coli} SCOP: c.1.9.3
Length = 291
Score = 48.1 bits (114), Expect = 8e-07
Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 10/106 (9%)
Query: 56 VFRQQLELAKELKRPASIHCV--RAFGDLLEIMKSVGPFPDGVII-HS-YLGSAEMVPEL 111
VF + RP S H + L ++++ G V + H + + + ++
Sbjct: 139 VFIAAALAHNQTGRPISTHTSFSTMGLEQLALLQAHGVDLSRVTVGHCDLKDNLDNILKM 198
Query: 112 SKLGAYFSFSGFLM------SMKAQKAKKMLKVVPSERILLETDAP 151
LGAY F + + R++L D
Sbjct: 199 IDLGAYVQFDTIGKNSYYPDEKRIAMLHALRDRGLLNRVMLSMDIT 244
>3ovg_A Amidohydrolase; structural genomics, PSI-2, protein structure
initiative, NE SGX research center for structural
genomics, NYSGXRC, HAD, PSI; HET: KCX; 2.06A {Mycoplasma
synoviae} PDB: 3msr_A*
Length = 363
Score = 47.5 bits (112), Expect = 2e-06
Identities = 18/111 (16%), Positives = 31/111 (27%), Gaps = 11/111 (9%)
Query: 56 VFRQQLELAKELKRPASIHCVRAFGDL--LEIMKSVGPFPDGVII---HSYLGSAEMVPE 110
+ P +H L + + G PD + I +
Sbjct: 170 ALEVAARTSILTGCPILVHTQLGTMALEVAKHLIGFGANPDKIQISHLNKNPDKYYYEKV 229
Query: 111 LSKLGAYFSFSGFLM------SMKAQKAKKMLKVVPSERILLETDAPDALP 155
+ + G F G S+ A+ K ++ + I L DA L
Sbjct: 230 IKETGVTLCFDGPDRVKYYPDSLLAENIKYLVDKGLQKHITLSLDAGRILY 280
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.1 bits (101), Expect = 5e-05
Identities = 52/276 (18%), Positives = 93/276 (33%), Gaps = 87/276 (31%)
Query: 19 FSTLKEFFEITPAAAVGEIGLDKGSKGREI--DFMDQVGV-----FRQQLELAKELKRPA 71
FS L + G KG+ I ++ + + ++ KE+ +
Sbjct: 1659 FSILDIVINNPVNLTI----HFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHS 1714
Query: 72 SIHCVRAFGDLL------------------EIMKSVGPFPDGVII--HSYLGSAEMVPEL 111
+ + R+ LL E +KS G P HS LG E
Sbjct: 1715 TSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHS-LG------EY 1767
Query: 112 SKLGAYFSFSGFLMSMKAQKAKKMLKVVPSER-ILLETDAPDALPKAELN----SLFLVD 166
+ L + + MS+++ +++VV R + ++ A+P+ EL + ++
Sbjct: 1768 AALAS---LADV-MSIES-----LVEVV-FYRGMTMQ----VAVPRDELGRSNYGMIAIN 1813
Query: 167 GDPSLPQELSAK--EEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLD--YVAS 222
P ++A +E V K + L E N +NV + YVA+
Sbjct: 1814 -----PGRVAASFSQEALQYVVER------VGKRTGWL-VE----IVN-YNVENQQYVAA 1856
Query: 223 ----LLDMTKEELAELSYRN--AIRL---FSYEGSK 249
LD L + + I L S E +
Sbjct: 1857 GDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVE 1892
Score = 38.9 bits (90), Expect = 0.002
Identities = 46/237 (19%), Positives = 81/237 (34%), Gaps = 56/237 (23%)
Query: 15 TPNWF--STLKEFFEIT-PAAAVGEIGLDKGSKGREI--DFM---------DQVGVFRQQ 60
T ++F S L+E F P G D+ + E+ F+ +VG F Q
Sbjct: 24 TASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQV 83
Query: 61 LELA-KELKRP----ASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPE-LSKL 114
L L E + IH + A LL+ + +I +Y+ + M K
Sbjct: 84 LNLCLTEFENCYLEGNDIHALAA--KLLQENDT-TLVKTKELIKNYITARIMAKRPFDKK 140
Query: 115 GAYFSFSGFLMSMKAQKAKKMLKVV-----PSERILLETDAPDALPKAELNSLFLVDGDP 169
S S ++ A+ L + ++ EL L+
Sbjct: 141 ----SNSALFRAVGEGNAQ--LVAIFGGQGNTDDYF-----------EELRDLY--QTYH 181
Query: 170 SLPQEL--SAKEEHSPNVGSASDNQFHASK--DSSTLPKETLNHPANIHNVLDYVAS 222
L +L + E S + + D + ++ + E L +P+N + DY+ S
Sbjct: 182 VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN----ILEWLENPSNTPDK-DYLLS 233
Score = 35.4 bits (81), Expect = 0.018
Identities = 33/183 (18%), Positives = 58/183 (31%), Gaps = 68/183 (37%)
Query: 88 SVGPFPDGVIIHSYLGSAE---MVPELSKLGAYFSFSGFLMSMKAQKAKKMLKVVPSERI 144
S P + H GS E +VP S +F S Q ++ K++P
Sbjct: 5 STRPL---TLSH---GSLEHVLLVPTAS----FFIAS--------QLQEQFNKILPE--- 43
Query: 145 LLETDAPDALPKAELNSLFLVDGDPSLPQELSAK-------EEHSPNVGSASD------N 191
P + D +P+ P EL K VG
Sbjct: 44 ----------PTEGFAA----DDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLT 89
Query: 192 QFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEGSKIL 251
+F + L +IH + A LL + + + + I+ +Y ++I+
Sbjct: 90 EFE----NCYL------EGNDIHAL---AAKLL--QENDTTLVKTKELIK--NYITARIM 132
Query: 252 TEK 254
++
Sbjct: 133 AKR 135
Score = 32.7 bits (74), Expect = 0.14
Identities = 35/211 (16%), Positives = 62/211 (29%), Gaps = 59/211 (27%)
Query: 70 PASIHCVRAFGDLLEIMKSVGPFP-DGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMS-M 127
P + L E + P P +G + EL F G++ S +
Sbjct: 23 PTASFF--IASQLQEQFNKILPEPTEGFAADDEPTT---PAEL-----VGKFLGYVSSLV 72
Query: 128 KAQKAKKMLKVVPSERILLETDAPDALPKAELNSLFLVDGD-----PSLPQELSAKEEHS 182
+ K + +V+ + L E + +L D L QE +
Sbjct: 73 EPSKVGQFDQVL---NLCLT----------EFENCYLEGNDIHALAAKLLQENDTTLVKT 119
Query: 183 PNV------GSASDNQFHASKDSSTLPKETLNHPANIH-------NVLDY---------- 219
+ + K +S L + A + N DY
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQT 179
Query: 220 ----VASLLDMTKEELAELSY--RNAIRLFS 244
V L+ + E L+EL +A ++F+
Sbjct: 180 YHVLVGDLIKFSAETLSELIRTTLDAEKVFT 210
Score = 31.2 bits (70), Expect = 0.36
Identities = 47/263 (17%), Positives = 86/263 (32%), Gaps = 90/263 (34%)
Query: 12 QERTPNWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPA 71
Q T ++F L++ ++ T VG++ I F + L++ ++
Sbjct: 163 QGNTDDYFEELRDLYQ-TYHVLVGDL----------IKFSAET--------LSELIRTTL 203
Query: 72 SIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKL-GAYFSFSG-FLMSMKA 129
V F G+ I +L + P+ L S ++ + A
Sbjct: 204 DAEKV---------------FTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQL-A 247
Query: 130 Q--KAKKMLKVVPSE-RILLET---------------------DAPDALPKAELNSLFLV 165
K+L P E R L+ ++ KA + LF +
Sbjct: 248 HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA-ITVLFFI 306
Query: 166 DG--------DPSLPQELSAK-EEH-----SP--NVGSASDNQF--HASKDSSTLPKE-- 205
G + SLP + E+ SP ++ + + Q + +K +S LP
Sbjct: 307 -GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQ 365
Query: 206 ---TL-NHPANIHNVLD-YVASL 223
+L N N+ V+ SL
Sbjct: 366 VEISLVNGAKNL--VVSGPPQSL 386
>3ojg_A Phosphotriesterase; (beta/alpha)8 barrel, lactonase, hydrolase;
HET: KCX HL4; 1.60A {Geobacillus kaustophilus} PDB:
3orw_A* 3f4c_A* 3f4d_A*
Length = 330
Score = 42.4 bits (99), Expect = 7e-05
Identities = 16/108 (14%), Positives = 32/108 (29%), Gaps = 13/108 (12%)
Query: 56 VFRQQLELAKELKRPASIHCVRAFG--DLLEIMKSVGPFPDGVII-HSYL-GSAEMVPEL 111
FR KE H + + G P ++I H + +
Sbjct: 164 FFRAAARAQKETGAVIITHTQEGTMGPEQAAYLLEHGADPKKIVIGHMCGNTDPDYHRKT 223
Query: 112 SKLGAYFSFSGFLMS---------MKAQKAKKMLKVVPSERILLETDA 150
G Y +F F + + + +L+ ++I+L +
Sbjct: 224 LAYGVYIAFDRFGIQGMVGAPTDEERVRTLLALLRDGYEKQIMLSHNT 271
>3pnz_A Phosphotriesterase family protein; amidohydrolase fold; HET: KCX;
1.60A {Listeria monocytogenes serotype 4b
strorganism_taxid}
Length = 330
Score = 40.9 bits (95), Expect = 2e-04
Identities = 20/106 (18%), Positives = 35/106 (33%), Gaps = 10/106 (9%)
Query: 56 VFRQQLELAKELKRPASIHCVRAFG--DLLEIMKSVGPFPDGVII-HS-YLGSAEMVPEL 111
R E K P H + +EI+K + + I H ++
Sbjct: 169 TIRAVARAHHETKAPIHSHTEAGTMALEQIEILKQENIPLEYLSIGHMDRNLDPYYHKQV 228
Query: 112 SKLGAYFSFSGFLM------SMKAQKAKKMLKVVPSERILLETDAP 151
+K GA+ SF G S + ++ ++IL+ D
Sbjct: 229 AKTGAFMSFDGIAKIKYAPESARIAAILYLVSEGFEDQILVSGDTA 274
>3gtx_A Organophosphorus hydrolase; mutant, amidohydrolase, alpha-beta
barrel; HET: KCX; 1.62A {Deinococcus radiodurans} PDB:
2zc1_A* 3gti_A* 3gu9_A* 3gtf_A* 3gth_A* 3gu2_A* 3gu1_A*
3fdk_A* 3htw_A*
Length = 339
Score = 39.3 bits (91), Expect = 8e-04
Identities = 19/109 (17%), Positives = 36/109 (33%), Gaps = 13/109 (11%)
Query: 56 VFRQQLELAKELKRPASIHCVRAFG--DLLEIMKSVGPFPDGVII-HSYLG-SAEMVPEL 111
FR + +E P H E++ S+G P ++I H E
Sbjct: 174 FFRAAARVQRETGVPIITHTQEGQQGPQQAELLTSLGADPARIMIGHMDGNTDPAYHRET 233
Query: 112 SKLGAYFSFSGFLM---------SMKAQKAKKMLKVVPSERILLETDAP 151
+ G +F + + + +L ++R+LL D+
Sbjct: 234 LRHGVSIAFDRIGLQGMVGTPTDAERLSVLTTLLGEGYADRLLLSHDSI 282
>2ob3_A Parathion hydrolase; metalloenzyme, TIM barrel, nerve agents; HET:
KCX BTB; 1.04A {Brevundimonas diminuta} PDB: 1psc_A*
1jgm_A* 3cak_A* 1ez2_A* 1eyw_A* 1hzy_A 1i0b_A 1i0d_A
1p6b_A* 1p6c_A* 2oql_A* 2o4q_A* 3cs2_A* 3e3h_A* 1qw7_A*
1dpm_A* 2o4m_A* 1pta_A 3c86_A* 2d2j_A ...
Length = 330
Score = 38.5 bits (89), Expect = 0.001
Identities = 14/73 (19%), Positives = 20/73 (27%), Gaps = 5/73 (6%)
Query: 56 VFRQQLELAKELKRPASIHC---VRAFGDLLEIMKSVGPFPDGVII-HSYL-GSAEMVPE 110
V + + P + H R I +S G P V I HS +
Sbjct: 149 VLKAAARASLATGVPVTTHTAASQRDGEQQAAIFESEGLSPSRVCIGHSDDTDDLSYLTA 208
Query: 111 LSKLGAYFSFSGF 123
L+ G
Sbjct: 209 LAARGYLIGLDHI 221
>3k2g_A Resiniferatoxin-binding, phosphotriesterase- related protein; TIM
barrel, binuclear zinc, protein structure initiative II
(PSI II); 1.80A {Rhodobacter sphaeroides 2}
Length = 364
Score = 38.1 bits (88), Expect = 0.002
Identities = 23/140 (16%), Positives = 39/140 (27%), Gaps = 26/140 (18%)
Query: 31 AAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHC---VRAFGDLLEIMK 87
+GEIG+ E R P +H R +L++++
Sbjct: 172 IGLIGEIGVSSDFTAEEEK------SLRGAARAQVRTGLPLMVHLPGWFRLAHRVLDLVE 225
Query: 88 SVGPFPDGVII-HSYLGSA--EMVPELSKLGAYFSFSGFLMS--------------MKAQ 130
G ++ H L++ GA+ F M A+
Sbjct: 226 EEGADLRHTVLCHMNPSHMDPVYQATLAQRGAFLEFDMIGMDFFYADQGVQCPSDDEVAR 285
Query: 131 KAKKMLKVVPSERILLETDA 150
+ +RILL D
Sbjct: 286 AILGLADHGYLDRILLSHDV 305
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.038
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 13/35 (37%)
Query: 130 QKAKKM---LKVVPSERILLETDAPDALPKAELNS 161
Q KK+ LK+ A D+ P + +
Sbjct: 20 QALKKLQASLKLY----------ADDSAPALAIKA 44
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.4 bits (78), Expect = 0.038
Identities = 52/307 (16%), Positives = 89/307 (28%), Gaps = 107/307 (34%)
Query: 6 FIFRFVQERTPNWFSTLKE-FFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELA 64
F V P + L++ E+ PA V G+ GS G+ +A
Sbjct: 126 FAKYNVSRLQP--YLKLRQALLELRPAKNVLIDGV-LGS-GK------TW--------VA 167
Query: 65 KELKRPASIHCVRAFG-------------DLLEIMKS----VGPFPDGVIIHSY---LGS 104
++ + C F +LE+++ + P HS L
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 105 AEMVPELSKLGAYFSFSGFLMSMKAQKAKKMLKV---VPSE----------RILLET-DA 150
+ EL +L +K++ + L V V + +ILL T
Sbjct: 228 HSIQAELRRL------------LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK 275
Query: 151 P--DALPKAELNSLFLVDGDPSLPQ----ELSAKEEHSPNVGSASDNQFHASKDSSTLPK 204
D L A + L +L L K + LP+
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK---------------YLDCRPQDLPR 320
Query: 205 ETLN-HP-------ANIHNVL---DY--------VASLLDMTKEELAELSYRNAIRLFSY 245
E L +P +I + L D + ++++ + L YR S
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380
Query: 246 --EGSKI 250
+ I
Sbjct: 381 FPPSAHI 387
>2qpx_A Predicted metal-dependent hydrolase of the TIM-BA; YP_805737.1,
putative metal-dependent hydrolase; HET: KCX MSE; 1.40A
{Lactobacillus casei}
Length = 376
Score = 30.8 bits (69), Expect = 0.38
Identities = 18/111 (16%), Positives = 29/111 (26%), Gaps = 15/111 (13%)
Query: 56 VFRQQLELAKELKRPASIHCVRAFGD---------LLEIMKSVGPFPD--GVIIHSYLGS 104
+ P H D L+ V++H Y
Sbjct: 210 MLYHVAPFIIAQDMPLQFHVGYGDADTDMYLGNPLLMRDYLKAFTKKGLKVVLLHCYPYH 269
Query: 105 AEMVPELSKLG-AYFSFSGFLMSMKA---QKAKKMLKVVPSERILLETDAP 151
E S YF S + + + +++ P RIL +DA
Sbjct: 270 REAGYLASVFPNLYFDISLLDNLGPSGASRVFNEAVELAPYTRILFASDAS 320
>4dzi_A Putative TIM-barrel metal-dependent hydrolase; amidohydrolase,
bimetal binding site, enzyme FUNC initiative, EFI; HET:
SO4; 1.60A {Mycobacterium avium subsp}
Length = 423
Score = 29.2 bits (65), Expect = 1.4
Identities = 6/35 (17%), Positives = 17/35 (48%)
Query: 209 HPANIHNVLDYVASLLDMTKEELAELSYRNAIRLF 243
H + + + + A L ++ ++ ++ NA+ L
Sbjct: 359 HGEGLASPVSFTAELKGFSESDIRKIMRDNALDLL 393
>2f6k_A Metal-dependent hydrolase; metal dependent hydrolyse, aminohydro_2,
ACMDS, ACMS, trypto metabolism, quinolinic acid, QUIN;
2.50A {Lactobacillus plantarum} SCOP: c.1.9.15
Length = 307
Score = 28.6 bits (64), Expect = 1.9
Identities = 6/44 (13%), Positives = 12/44 (27%)
Query: 135 MLKVVPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAK 178
++ + E +L +D P + L E
Sbjct: 252 LMSLAQPEHLLYGSDIPYTPLDGSRQLGHALATTDLLTNEQKQA 295
>2wm1_A 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase;
neurological disorders, metal-dependent amidohydrolase,
kynurenine pathway; HET: 13P; 2.01A {Homo sapiens}
Length = 336
Score = 28.2 bits (63), Expect = 2.8
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 135 MLKVVPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAK 178
+ V+ ++++L TD P P EL L++ +E K
Sbjct: 277 LTDVIGKDKVILGTDYP--FPLGELEPGKLIESMEEFDEETKNK 318
Score = 26.7 bits (59), Expect = 7.1
Identities = 6/35 (17%), Positives = 12/35 (34%)
Query: 209 HPANIHNVLDYVASLLDMTKEELAELSYRNAIRLF 243
P + S+ + +E +L NA+
Sbjct: 294 FPLGELEPGKLIESMEEFDEETKNKLKAGNALAFL 328
>2gwg_A 4-oxalomesaconate hydratase; TIM-barrel like protein, structural
genomics, PSI, protein S initiative; 1.80A
{Rhodopseudomonas palustris} SCOP: c.1.9.15
Length = 350
Score = 28.0 bits (62), Expect = 3.0
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 213 IHNVLDYVASLLDMTKEELAELSYRNAIRLFS 244
+ Y+ + +T EE ++ NA R++
Sbjct: 300 YDDTKRYIEASTILTPEEKQQIYEGNARRVYP 331
>2f3i_A DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide;
RNA polymerase II, transferase; NMR {Homo sapiens}
Length = 150
Score = 27.2 bits (60), Expect = 3.5
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 98 IHSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQKAKKMLKVVPSERILL 146
++ G ++L AY S+ G LM ++ A + R+ L
Sbjct: 96 VYRIEGDETSTEAATRLSAYVSYGGLLMRLQGD-ANNLHGFEVDSRVYL 143
>2x3m_A Hypothetical protein ORF239; unknown function; 1.45A {Pyrobaculum
spherical virus}
Length = 239
Score = 27.5 bits (60), Expect = 3.7
Identities = 26/129 (20%), Positives = 40/129 (31%), Gaps = 20/129 (15%)
Query: 8 FRFVQERTPNWFSTLKEF-FEITPAAAVGEIGLDKGSKGREIDFMDQ------------- 53
F+ T + K+ +I A A G GL G +D
Sbjct: 90 MEFMYWYTRTYLEEAKDIRPDIADALARGMAGLAFGRTDWVASMLDPQIMRHIYTDPEVA 149
Query: 54 --VGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPEL 111
R L + + + D++ K+ G P+ V+ AE VP L
Sbjct: 150 RIYSETRDMLRRVSDYYISLTTMELGKVADIIAEAKAKGENPE-VVAREI---AEAVPRL 205
Query: 112 SKLGAYFSF 120
S YF+
Sbjct: 206 SPKSLYFNL 214
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA
repair, endonuclease, helix-hairpin-helix, DNA binding
protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
PDB: 2kn7_A*
Length = 63
Score = 25.4 bits (56), Expect = 5.2
Identities = 5/29 (17%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 209 HPANIHNVLDYVAS---LLDMTKEELAEL 234
+ N +++ +V + L ++++EL +
Sbjct: 13 NAKNCRSLMHHVKNIAELAALSQDELTSI 41
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint,
transferase-transferase inhib complex; HET: S25; 1.60A
{Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A*
2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Length = 323
Score = 27.3 bits (61), Expect = 5.8
Identities = 14/120 (11%), Positives = 32/120 (26%), Gaps = 21/120 (17%)
Query: 91 PFPDGVIIHSYLGSAEMVPELSK--LGAYFSFSGFLMSMKAQK-AKKMLKVVPSERILLE 147
P+ ++ E S + + K+L PS RI +
Sbjct: 207 PWDQ---------PSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHKILVENPSARITIP 257
Query: 148 ---------TDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKD 198
+ + S + + + + + + SP ++ SK+
Sbjct: 258 DIKKDRWYNKPLKKGAKRPRVTSGGVSESPSGFSKHIQSNLDFSPVNSASRTPGSGWSKE 317
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET:
DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Length = 84
Score = 25.6 bits (56), Expect = 5.9
Identities = 5/29 (17%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 209 HPANIHNVLDYVAS---LLDMTKEELAEL 234
+ N +++ +V + L ++++EL +
Sbjct: 27 NAKNCRSLMHHVKNIAELAALSQDELTSI 55
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain,
kinase, transferase-transferase inhibitor COM; HET: 42Q;
1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A*
3hng_A*
Length = 359
Score = 27.2 bits (60), Expect = 6.3
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 64 AKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLG 103
K LK A+ RA L+I+ +G + + + LG
Sbjct: 57 VKMLKEGATHSEHRALMSELKILIHIGHHLN---VVNLLG 93
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.384
Gapped
Lambda K H
0.267 0.0573 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,866,501
Number of extensions: 231601
Number of successful extensions: 776
Number of sequences better than 10.0: 1
Number of HSP's gapped: 735
Number of HSP's successfully gapped: 59
Length of query: 254
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 163
Effective length of database: 4,160,982
Effective search space: 678240066
Effective search space used: 678240066
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.7 bits)