RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 025333
(254 letters)
>d1j6oa_ c.1.9.12 (A:) Hypothetical protein TM0667 {Thermotoga
maritima [TaxId: 2336]}
Length = 260
Score = 88.1 bits (217), Expect = 2e-21
Identities = 48/242 (19%), Positives = 91/242 (37%), Gaps = 47/242 (19%)
Query: 3 WVCFIFRFVQERTPNWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLE 62
V +E ++ L++F + A+GE GLD + +V F +Q+E
Sbjct: 62 SVGVHPHDAKEVPEDFIEHLEKFAKDEKVVAIGETGLDFFRNISPAEVQKRV--FVEQIE 119
Query: 63 LAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSG 122
LA +L P +H A+ + EI+++ +IH++ E + LG G
Sbjct: 120 LAGKLNLPLVVHIRDAYSEAYEILRTESLPEKRGVIHAFSSDYEWAKKFIDLGFLLGIGG 179
Query: 123 FLMSMKAQKAKKMLKVVPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHS 182
+ K + ++++K V E I+LETD P P+
Sbjct: 180 PVTYPKNEALREVVKRVGLEYIVLETDCPFLPPQP------------------------- 214
Query: 183 PNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRL 242
+ N P + V++ ++ +L + + ++ E + NA R+
Sbjct: 215 --------------------FRGKRNEPKYLKYVVETISQVLGVPEAKVDEATTENARRI 254
Query: 243 FS 244
F
Sbjct: 255 FL 256
>d1yixa1 c.1.9.12 (A:1-265) Putative deoxyribonuclease YcfH
{Escherichia coli [TaxId: 562]}
Length = 265
Score = 86.6 bits (213), Expect = 6e-21
Identities = 47/217 (21%), Positives = 82/217 (37%), Gaps = 45/217 (20%)
Query: 36 EIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDG 95
+ Q F +++ +EL +P +H A D L I++ G
Sbjct: 92 LGETGLDYYYTPETKVRQQESFIHHIQIGRELNKPVIVHTRDARADTLAILREEKVTDCG 151
Query: 96 VIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQKAKKMLKVVPSERILLETDAPDALP 155
++H + E +L LG Y SFSG + A++ + + VP +R+L+ETD+P P
Sbjct: 152 GVLHCFTEDRETAGKLLDLGFYISFSGIVTFRNAEQLRDAARYVPLDRLLVETDSPYLAP 211
Query: 156 KAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHN 215
+ N PA + +
Sbjct: 212 VPH---------------------------------------------RGKENQPAMVRD 226
Query: 216 VLDYVASLLDMTKEELAELSYRNAIRLFSYEGSKILT 252
V +Y+A L + EELA+++ N RLF + S++ +
Sbjct: 227 VAEYMAVLKGVAVEELAQVTTDNFARLFHIDASRLQS 263
>d1zzma1 c.1.9.12 (A:1-259) Putative deoxyribonuclease YjjV
{Escherichia coli [TaxId: 562]}
Length = 259
Score = 84.3 bits (207), Expect = 4e-20
Identities = 45/242 (18%), Positives = 77/242 (31%), Gaps = 46/242 (19%)
Query: 3 WVCFIFRFVQERTPNWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLE 62
+ +++ + L++ E PA V + G + F Q + +QL+
Sbjct: 62 ALGLHPGMLEKHSDVSLEQLQQALERRPAKVVAVGEIGLDLFGDDPQFERQQWLLDEQLK 121
Query: 63 LAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSG 122
LAK P +H R L +K G ++H + GS + +LG G
Sbjct: 122 LAKRYDLPVILHSRRTHDKLAMHLKRHDLPRTG-VVHGFSGSLQQAERFVQLGYKIGVGG 180
Query: 123 FLMSMKAQKAKKMLKVVPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHS 182
+ +A K + ++ +P +LLETDAPD
Sbjct: 181 TITYPRASKTRDVIAKLPLASLLLETDAPDMPLNGF------------------------ 216
Query: 183 PNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRL 242
+ N P V + L +E+A+ N L
Sbjct: 217 ---------------------QGQPNRPEQAARVFAVLCELRREPADEIAQALLNNTYTL 255
Query: 243 FS 244
F+
Sbjct: 256 FN 257
>d1xwya1 c.1.9.12 (A:1-260) Deoxyribonuclease TatD (MttC)
{Escherichia coli [TaxId: 562]}
Length = 260
Score = 73.1 bits (178), Expect = 5e-16
Identities = 46/214 (21%), Positives = 81/214 (37%), Gaps = 44/214 (20%)
Query: 32 AAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGP 91
A+GE GLD +Q F QL +A +L P +HC A + +++
Sbjct: 87 VAIGECGLDF--NRNFSTPEEQERAFVAQLRIAADLNMPVFMHCRDAHERFMTLLEPWLD 144
Query: 92 FPDGVIIHSYLGSAEMVPELSKLGAYFSFSGF-LMSMKAQKAKKMLKVVPSERILLETDA 150
G ++H + G+ E + G Y +G+ + + +++L ++P+E++L+ETDA
Sbjct: 145 KLPGAVLHCFTGTREEMQACVAHGIYIGITGWVCDERRGLELRELLPLIPAEKLLIETDA 204
Query: 151 PDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHP 210
P LP+ D + P N P
Sbjct: 205 PYLLPR-----------------------------------------DLTPKPSSRRNEP 223
Query: 211 ANIHNVLDYVASLLDMTKEELAELSYRNAIRLFS 244
A++ ++L +A LA + N LF
Sbjct: 224 AHLPHILQRIAHWRGEDAAWLAATTDANVKTLFG 257
>d1bf6a_ c.1.9.3 (A:) Phosphotriesterase homology protein
{Escherichia coli [TaxId: 562]}
Length = 291
Score = 67.6 bits (164), Expect = 7e-14
Identities = 27/245 (11%), Positives = 59/245 (24%), Gaps = 63/245 (25%)
Query: 11 VQERTPNWFSTLKEFFEITP--AAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELK 68
VQE +++ + T A + EIG +G + ++V F +
Sbjct: 97 VQELAQEMVDEIEQGIDGTELKAGIIAEIGTSEG---KITPLEEKV--FIAAALAHNQTG 151
Query: 69 RPASIHCVRAFGDLLEIMKSVGPFPDGV----IIHSYLGSAEMVPELSKLGAYFSFSGFL 124
RP S H + L ++ D + + + ++ LGAY F
Sbjct: 152 RPISTHTSFSTMGLEQLALLQAHGVDLSRVTVGHCDLKDNLDNILKMIDLGAYVQFDTIG 211
Query: 125 ------MSMKAQKAKKMLKVVPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAK 178
+ + R++L D
Sbjct: 212 KNSYYPDEKRIAMLHALRDRGLLNRVMLSMDITRRSHLK--------------------- 250
Query: 179 EEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRN 238
+ + + + ++ ++ + N
Sbjct: 251 ------------------------ANGGYGYDYLLTTFIPQLRQ-SGFSQADVDVMLREN 285
Query: 239 AIRLF 243
+ F
Sbjct: 286 PSQFF 290
>d1i0da_ c.1.9.3 (A:) Phosphotriesterase (parathion hydrolase, PTE)
{Pseudomonas diminuta [TaxId: 293]}
Length = 331
Score = 47.4 bits (111), Expect = 5e-07
Identities = 30/273 (10%), Positives = 57/273 (20%), Gaps = 71/273 (26%)
Query: 3 WVCFIFRFVQERTPNWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMD---QVGVFRQ 59
F L +FF + + G+ G Q V +
Sbjct: 93 ATGLWFDPPLSMRLRSVEELTQFFLREIQYGIEDTGIRAGIIKVATTGKATPFQELVLKA 152
Query: 60 QLELAKELKRPASIHCVRAFGDLLEIMKSVG-----PFPDGVIIHSYLGSAEMVPELSKL 114
+ P + H + D + P + + L+
Sbjct: 153 AARASLATGVPVTTHTAASQRDGEQQAAIFESEGLSPSRVCIGHSDDTDDLSYLTALAAR 212
Query: 115 GAYFSFSGFLMSMK--------------------AQKAKKMLKVVPSERILLETDAPDAL 154
G S A K ++ ++IL+ D
Sbjct: 213 GYLIGLDHIPHSAIGLEDNASASALLGIRSWQTRALLIKALIDQGYMKQILVSNDWLFGF 272
Query: 155 PKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIH 214
+ + +V +P +
Sbjct: 273 S---------------------SYVTNIMDVMDR-------------------VNPDGMA 292
Query: 215 NVLDYVASLL---DMTKEELAELSYRNAIRLFS 244
+ V L + +E LA ++ N R S
Sbjct: 293 FIPLRVIPFLREKGVPQETLAGITVTNPARFLS 325
>d2gwga1 c.1.9.15 (A:1-342) 4-oxalomesaconate hydratase LigJ
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 342
Score = 28.3 bits (61), Expect = 0.95
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 213 IHNVLDYVASLLDMTKEELAELSYRNAIRLFS 244
+ Y+ + +T EE ++ NA R++
Sbjct: 300 YDDTKRYIEASTILTPEEKQQIYEGNARRVYP 331
>d2f6ka1 c.1.9.15 (A:2-307) Putative amidohydrolase LP2961
{Lactobacillus plantarum [TaxId: 1590]}
Length = 306
Score = 27.0 bits (58), Expect = 2.2
Identities = 6/46 (13%), Positives = 12/46 (26%)
Query: 133 KKMLKVVPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAK 178
++ + E +L +D P + L E
Sbjct: 249 PTLMSLAQPEHLLYGSDIPYTPLDGSRQLGHALATTDLLTNEQKQA 294
>d2gexa1 d.17.4.9 (A:2-139) Nogalamycin biosynthesis protein SnoL
{Streptomyces nogalater [TaxId: 38314]}
Length = 138
Score = 25.2 bits (54), Expect = 5.7
Identities = 4/24 (16%), Positives = 10/24 (41%)
Query: 73 IHCVRAFGDLLEIMKSVGPFPDGV 96
+ + + + +G PDG+
Sbjct: 115 VVEHWDVFNFSPLFRDLGVVPDGL 138
>d2b5dx2 c.6.2.4 (X:1-404) Alpha-amylase AmyC {Thermotoga maritima
[TaxId: 2336]}
Length = 404
Score = 25.8 bits (56), Expect = 6.2
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 97 IIHSYLGSAEMVPELSKLGAYFSFSGFLMSM 127
I +Y+ M E+ S + LM M
Sbjct: 34 ITETYIPLLMMFDEIEDFRLTMSITPPLMEM 64
>d1jmsa1 a.60.6.1 (A:148-242) Terminal deoxynucleotidyl transferase
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 95
Score = 24.4 bits (53), Expect = 6.9
Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 204 KETLNHP-ANIHNVLDYVASLLDMTKEELAELSYRNAIR 241
+ TLN+ + LD +A ++ + E + L++ A
Sbjct: 11 RTTLNNYNQLFTDALDILAENDELRENEGSCLAFMRASS 49
>d1h54a1 a.102.1.4 (A:269-753) Lactobacillus maltose phosphorylase,
central domain {Lactobacillus brevis [TaxId: 1580]}
Length = 485
Score = 25.5 bits (55), Expect = 8.0
Identities = 8/34 (23%), Positives = 11/34 (32%)
Query: 206 TLNHPANIHNVLDYVASLLDMTKEELAELSYRNA 239
+ P N+L Y LD E + A
Sbjct: 102 GITDPKVTRNLLMYRYKQLDGAYINAQEQGLKGA 135
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.384
Gapped
Lambda K H
0.267 0.0368 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 931,648
Number of extensions: 42078
Number of successful extensions: 126
Number of sequences better than 10.0: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 21
Length of query: 254
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 171
Effective length of database: 1,268,006
Effective search space: 216829026
Effective search space used: 216829026
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.8 bits)