Query 025334
Match_columns 254
No_of_seqs 113 out of 1250
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 04:47:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025334.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025334hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03145 Protein phosphatase 2 100.0 2.8E-48 6E-53 332.1 29.2 246 3-254 63-330 (365)
2 COG0631 PTC1 Serine/threonine 100.0 3.6E-46 7.7E-51 308.0 23.7 239 3-254 6-252 (262)
3 PTZ00224 protein phosphatase 2 100.0 3E-44 6.5E-49 308.2 29.3 235 3-254 20-271 (381)
4 KOG0698 Serine/threonine prote 100.0 1.9E-42 4.1E-47 294.8 28.5 246 7-254 42-304 (330)
5 PF00481 PP2C: Protein phospha 100.0 3.2E-44 7E-49 296.8 16.0 236 6-246 1-254 (254)
6 KOG0697 Protein phosphatase 1B 100.0 2.7E-42 5.9E-47 273.1 20.6 245 3-253 20-290 (379)
7 cd00143 PP2Cc Serine/threonine 100.0 9E-41 1.9E-45 275.9 26.7 242 5-253 1-254 (254)
8 PRK14559 putative protein seri 100.0 1.6E-40 3.5E-45 299.9 26.3 240 4-254 374-635 (645)
9 smart00332 PP2Cc Serine/threon 100.0 6.9E-40 1.5E-44 271.0 27.8 241 3-251 4-255 (255)
10 KOG0699 Serine/threonine prote 100.0 1.9E-34 4.1E-39 236.2 19.0 156 95-254 327-503 (542)
11 KOG0700 Protein phosphatase 2C 100.0 3E-31 6.5E-36 221.8 18.6 220 20-241 85-378 (390)
12 KOG1379 Serine/threonine prote 100.0 3.2E-26 6.9E-31 185.8 21.3 196 19-253 90-330 (330)
13 KOG0618 Serine/threonine phosp 99.9 6.7E-25 1.5E-29 199.2 15.2 242 4-254 521-772 (1081)
14 KOG1323 Serine/threonine phosp 99.9 2.7E-24 5.8E-29 175.1 17.2 222 32-253 140-486 (493)
15 PF13672 PP2C_2: Protein phosp 99.9 2.2E-22 4.7E-27 162.1 13.4 178 10-222 3-193 (212)
16 smart00331 PP2C_SIG Sigma fact 99.8 7.9E-19 1.7E-23 139.3 22.4 184 5-238 4-192 (193)
17 TIGR02865 spore_II_E stage II 99.8 5.8E-17 1.3E-21 151.6 20.9 200 5-253 552-763 (764)
18 PF07228 SpoIIE: Stage II spor 99.7 8.7E-15 1.9E-19 115.9 19.7 176 34-254 2-193 (193)
19 COG2208 RsbU Serine phosphatas 98.9 4.2E-07 9.1E-12 79.2 21.1 189 20-254 162-366 (367)
20 PRK10693 response regulator of 89.8 4.7 0.0001 34.1 10.3 104 20-130 150-259 (303)
21 PF09436 DUF2016: Domain of un 61.0 5.7 0.00012 25.9 1.4 25 193-217 23-47 (72)
22 COG3700 AphA Acid phosphatase 51.1 32 0.0007 26.8 4.3 45 197-241 71-130 (237)
23 COG2168 DsrH Uncharacterized c 50.3 13 0.00028 25.6 1.9 27 196-222 24-50 (96)
24 PF06972 DUF1296: Protein of u 36.3 48 0.001 20.7 2.6 26 210-235 18-44 (60)
25 PF04077 DsrH: DsrH like prote 28.6 14 0.0003 25.0 -0.7 25 197-221 19-43 (88)
26 PF01436 NHL: NHL repeat; Int 26.0 1E+02 0.0022 15.6 3.7 20 106-125 9-28 (28)
27 PRK05457 heat shock protein Ht 25.2 95 0.0021 26.1 3.6 37 185-222 104-140 (284)
28 cd06409 PB1_MUG70 The MUG70 pr 24.5 75 0.0016 21.5 2.3 21 186-206 42-62 (86)
29 PRK02391 heat shock protein Ht 24.1 77 0.0017 26.9 2.9 36 186-222 104-139 (296)
30 TIGR00067 glut_race glutamate 23.2 1.3E+02 0.0028 24.8 4.0 50 39-88 1-57 (251)
31 COG0796 MurI Glutamate racemas 21.6 1.4E+02 0.003 25.0 3.8 54 38-91 7-67 (269)
32 PRK00865 glutamate racemase; P 21.1 1.5E+02 0.0032 24.5 4.0 52 38-89 7-65 (261)
33 PRK03982 heat shock protein Ht 21.0 1.2E+02 0.0026 25.4 3.5 36 186-222 96-131 (288)
34 PRK06246 fumarate hydratase; P 20.4 3.8E+02 0.0082 22.6 6.1 23 95-117 240-262 (280)
No 1
>PLN03145 Protein phosphatase 2c; Provisional
Probab=100.00 E-value=2.8e-48 Score=332.12 Aligned_cols=246 Identities=35% Similarity=0.555 Sum_probs=207.8
Q ss_pred CceeEEEeeecCCCCCCCCCceEeeeecc--------CCCceEEEEEEeCCCCChHHHHHHHHHHHHHHcCCCCCCCHHH
Q 025334 3 KHVTHGYHLVKGKAGHPMEDYVVAQFKQV--------DENELGLFAIFDGHLSHEIPDFLRTHLFENILNEPNFWQDPES 74 (254)
Q Consensus 3 ~~~~~~~~s~~G~~~~~neD~~~~~~~~~--------~~~~~~l~~V~DG~Gg~~~a~~~~~~~~~~l~~~~~~~~~~~~ 74 (254)
..+.++.+|++|.|+ .|||++++..+.. ...+..+|||||||||+.+++++++.+++.+.+...+...+..
T Consensus 63 ~~~~~~~~s~~G~R~-~nED~~~~~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~age~as~~l~~~i~~~~~~~~~~~~ 141 (365)
T PLN03145 63 PVVRSGAWADIGSRS-SMEDVYICVDNFMSDFGLKNSEDGPSAFYGVFDGHGGKHAADFACYHLPRFIVEDEDFPREIEK 141 (365)
T ss_pred CceEEEEEccccCCC-CCCCceEecccccccccccccCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHhhhccchhHHH
Confidence 346899999999866 9999987533211 1234689999999999999999999999999876665556788
Q ss_pred HHHHHHHHHHHHHHhhhcc-cCCCCccEEEEEEEeCCEEEEEEcCCCcEEEEeCCeeeeCCCCCCCCc--hHHHHHhcCC
Q 025334 75 AVRRAYCITDTTILEKAVD-LGKGGSTAVTAILINCEKLVVANVGDSRAVICKNGVAKQLSVDHEPSS--EREHIEGRGG 151 (254)
Q Consensus 75 ~l~~~~~~~~~~l~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~vGDsr~~~~~~~~~~~lt~dh~~~~--e~~r~~~~g~ 151 (254)
.|.++|..++..+.+.... ....+|||++++++.++.+|++|+||||+|+++++++.+||+||++.+ |..|+.+.|+
T Consensus 142 al~~af~~~d~~~~~~~~~~~~~~~GTTavv~li~~~~l~vaNvGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~Gg 221 (365)
T PLN03145 142 VVSSAFLQTDTAFAEACSLDASLASGTTALAALVVGRSLVVANAGDCRAVLCRRGKAIEMSRDHKPMCSKERKRIEASGG 221 (365)
T ss_pred HHHHHHHHHhHHHHhhhccccCCCCcCcEEEEEEECCeEEEEecCCceEEEEcCCeEEEecCCCCCCCHHHHHHHHHcCC
Confidence 8999999999998765432 234589999999999999999999999999999999999999999997 8889999999
Q ss_pred eEecCCCCCCccCCccccccccCCccccC-------CcCCCCeEEEEEcCCCCeEEEEEcCCCcccCCHHHHHHHH----
Q 025334 152 FVSNFPGDVPRVDGQLAVARAFGDKSLKM-------HLSSEPHVVMETIDDDTEFIILASDGLWKVMSNQDAADAI---- 220 (254)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~tr~~G~~~~~~-------~~~~~p~~~~~~l~~~~~~liL~SDG~~~~l~~~~i~~~~---- 220 (254)
.+.. .+.++...+||++|+..+|. .+.++|++..+++.+.+++|||||||||++++++++.+++
T Consensus 222 ~v~~-----g~v~g~l~vTRalGD~~~k~~k~~~~~~vs~ePdv~~~~l~~~D~fLILaSDGLwdvls~ee~v~~i~~~l 296 (365)
T PLN03145 222 YVYD-----GYLNGQLNVARALGDWHMEGMKGSDGGPLSAEPELMTTQLTEEDEFLIIGCDGIWDVFRSQNAVDFARRRL 296 (365)
T ss_pred ceec-----ceECCccccccccccccccccccccCCCcceEEEEEEEECCCCCEEEEEeCCccccCcCHHHHHHHHHHHH
Confidence 8863 25566678999999976652 3678999999999986778899999999999999975554
Q ss_pred HcccCHHHHHHHHHHHHHhCCCCCCcEEEEEEeC
Q 025334 221 KNIKDARSAARHLTEEALARNSSDDISCVVVKFN 254 (254)
Q Consensus 221 ~~~~~~~~~a~~l~~~a~~~~~~Dn~Tvivv~~~ 254 (254)
....+|+++|+.|++.|+.+++.||+|||||+|+
T Consensus 297 ~~~~~p~~aa~~Lv~~Al~rgs~DNITvIVV~l~ 330 (365)
T PLN03145 297 QEHNDPVMCSKELVDEALKRKSGDNLAVVVVCFQ 330 (365)
T ss_pred hcCCCHHHHHHHHHHHHHhCCCCCCEEEEEEEee
Confidence 4446899999999999999999999999999984
No 2
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=3.6e-46 Score=307.98 Aligned_cols=239 Identities=30% Similarity=0.408 Sum_probs=205.8
Q ss_pred CceeEEEeeecCCCCCCCCCceEeeeeccCCCceEEEEEEeCCCCChHHHHHHHHHHHHHHcCCC---C-CCC--HHHHH
Q 025334 3 KHVTHGYHLVKGKAGHPMEDYVVAQFKQVDENELGLFAIFDGHLSHEIPDFLRTHLFENILNEPN---F-WQD--PESAV 76 (254)
Q Consensus 3 ~~~~~~~~s~~G~~~~~neD~~~~~~~~~~~~~~~l~~V~DG~Gg~~~a~~~~~~~~~~l~~~~~---~-~~~--~~~~l 76 (254)
..+.++..++.|..++.|||++.+........ ..+++|||||||+++++++++.+++.+.+... . ... ..+.+
T Consensus 6 ~~~~~~~~s~~g~~R~~NeD~~~~~~~~~~~~-~~l~~V~DG~GGh~~ge~aS~~~v~~l~~~~~~~~~~~~~~~~~~~l 84 (262)
T COG0631 6 LSLKVAGLSDVGTVRKHNEDAFLIKPNENGNL-LLLFAVADGMGGHAAGEVASKLAVEALARLFDETNFNSLNESLEELL 84 (262)
T ss_pred ceeeeeeeccCCCccCCCCcceeeccccCCcc-eeEEEEEeCccchhHHHHHHHHHHHHHHHHHHhccccccchhHHHHH
Confidence 35778889999999989999998755333333 67999999999999999999999988876421 1 111 57999
Q ss_pred HHHHHHHHHHHHhhhc--ccCCCCccEEEEEEEeCCEEEEEEcCCCcEEEEeCCeeeeCCCCCCCCchHHHHHhcCCeEe
Q 025334 77 RRAYCITDTTILEKAV--DLGKGGSTAVTAILINCEKLVVANVGDSRAVICKNGVAKQLSVDHEPSSEREHIEGRGGFVS 154 (254)
Q Consensus 77 ~~~~~~~~~~l~~~~~--~~~~~~~tt~~~~~~~~~~~~~~~vGDsr~~~~~~~~~~~lt~dh~~~~e~~r~~~~g~~~~ 154 (254)
.+.+..+++.+..... ....++|||++++++.+++++++|+||||+|++|++.++++|.||++.++ ++..+....
T Consensus 85 ~~~~~~~n~~i~~~~~~~~~~~~mgtTl~~~~~~~~~l~~a~vGDSR~yl~~~~~~~~lT~DH~~~~~---~~~~~~~~~ 161 (262)
T COG0631 85 KEAILKANEAIAEEGQLNEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLRDGELKQLTEDHSLVNR---LEQRGIITP 161 (262)
T ss_pred HHHHHHHHHHHHHhhhcccccCCCceeEEEEEEECCeEEEEEccCCeEEEEcCCceEEeccCCcHHHH---HHHhcCCCH
Confidence 9999999999988764 33578999999999999999999999999999999999999999998875 456666666
Q ss_pred cCCCCCCccCCccccccccCCccccCCcCCCCeEEEEEcCCCCeEEEEEcCCCcccCCHHHHHHHHHcccCHHHHHHHHH
Q 025334 155 NFPGDVPRVDGQLAVARAFGDKSLKMHLSSEPHVVMETIDDDTEFIILASDGLWKVMSNQDAADAIKNIKDARSAARHLT 234 (254)
Q Consensus 155 ~~~~~~~~~~~~~~~tr~~G~~~~~~~~~~~p~~~~~~l~~~~~~liL~SDG~~~~l~~~~i~~~~~~~~~~~~~a~~l~ 234 (254)
.+...+++.+ .+||++|+.. ...|++...++.+ +++|||||||||+.++++++.++++...+|+.+++.|+
T Consensus 162 ~~~~~~~~~~---~ltralG~~~-----~~~p~~~~~~~~~-~d~llL~SDGl~d~v~~~~i~~il~~~~~~~~~~~~li 232 (262)
T COG0631 162 EEARSHPRRN---ALTRALGDFD-----LLEPDITELELEP-GDFLLLCSDGLWDVVSDDEIVDILKNSETPQEAADKLI 232 (262)
T ss_pred HHHHhCccch---hhhhhcCCCc-----ccceeEEEEEcCC-CCEEEEECCCCccCcCHHHHHHHHhcCCCHHHHHHHHH
Confidence 5555555655 9999999988 6899999999999 79999999999999999999999998789999999999
Q ss_pred HHHHhCCCCCCcEEEEEEeC
Q 025334 235 EEALARNSSDDISCVVVKFN 254 (254)
Q Consensus 235 ~~a~~~~~~Dn~Tvivv~~~ 254 (254)
+.|+.++..||+|++++++.
T Consensus 233 ~~a~~~g~~DNiT~ilv~~~ 252 (262)
T COG0631 233 ELALEGGGPDNITVVLVRLN 252 (262)
T ss_pred HHHHhcCCCCceEEEEEEee
Confidence 99999999999999999863
No 3
>PTZ00224 protein phosphatase 2C; Provisional
Probab=100.00 E-value=3e-44 Score=308.25 Aligned_cols=235 Identities=33% Similarity=0.535 Sum_probs=194.9
Q ss_pred CceeEEEeeecCCCCCCCCCceEeeeeccCCCceEEEEEEeCCCCChHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Q 025334 3 KHVTHGYHLVKGKAGHPMEDYVVAQFKQVDENELGLFAIFDGHLSHEIPDFLRTHLFENILNEPNFWQDPESAVRRAYCI 82 (254)
Q Consensus 3 ~~~~~~~~s~~G~~~~~neD~~~~~~~~~~~~~~~l~~V~DG~Gg~~~a~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~ 82 (254)
..+.+|+.+++|.|+ .|||++++. ...+..+|||||||||+++|.++++.+...+.+.... .....|++++..
T Consensus 20 ~~~~~g~~s~~G~R~-~nED~~~v~----~~~~~~lfgVfDGHgG~~~S~~~~~~l~~~l~~~~~~--~~~~~l~~a~~~ 92 (381)
T PTZ00224 20 SIFRCASACVNGYRE-SMEDAHLLY----LTDDWGFFGVFDGHVNDECSQYLARAWPQALEKEPEP--MTDERMEELCLE 92 (381)
T ss_pred ccEEEEEEeCCCCCC-CCCCeeEec----cCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHhcccc--ccHHHHHHHHHH
Confidence 468899999999987 899998752 2345579999999999999999999998777543221 124558899999
Q ss_pred HHHHHHhhhcccCCCCccEEEEEEE-eCCEEEEEEcCCCcEEEEeCCeeeeCCCCCCCCc--hHHHHHhcCCeEecCCCC
Q 025334 83 TDTTILEKAVDLGKGGSTAVTAILI-NCEKLVVANVGDSRAVICKNGVAKQLSVDHEPSS--EREHIEGRGGFVSNFPGD 159 (254)
Q Consensus 83 ~~~~l~~~~~~~~~~~~tt~~~~~~-~~~~~~~~~vGDsr~~~~~~~~~~~lt~dh~~~~--e~~r~~~~g~~~~~~~~~ 159 (254)
+++++.+... .+|||++++++ .+.+++++|+||||+|++|++++.+||+||++.+ |..|+.+.|+.+..
T Consensus 93 ~d~~i~~~~~----~~GsTatv~lI~~~~~l~vaNVGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~gg~v~~---- 164 (381)
T PTZ00224 93 IDEEWMDSGR----EGGSTGTFCVIMKDVHLQVGNVGDSRVLVCRDGKLVFATEDHKPNNPGERQRIEACGGRVVS---- 164 (381)
T ss_pred HHHHHHhccc----CCCCeEEEEEEEECCEEEEEEcccceEEEEECCEEEEcccCCCCCCHHHHhHHHHccCEecc----
Confidence 9999875432 24566666555 4689999999999999999999999999999997 78889999887753
Q ss_pred CCccCCccccccccCCccccC---------CcCCCCeEEEEEcCCCCeEEEEEcCCCcc-cCCHHHHHHHHHc----ccC
Q 025334 160 VPRVDGQLAVARAFGDKSLKM---------HLSSEPHVVMETIDDDTEFIILASDGLWK-VMSNQDAADAIKN----IKD 225 (254)
Q Consensus 160 ~~~~~~~~~~tr~~G~~~~~~---------~~~~~p~~~~~~l~~~~~~liL~SDG~~~-~l~~~~i~~~~~~----~~~ 225 (254)
.+.++.+.+||++|+..+|. .+.++|++..+++.+ +|+|||||||||+ .++++++.+++.+ ..+
T Consensus 165 -~Rv~G~l~vTRalGd~~~K~~~~~~~~~~~v~~~Pdi~~~~l~~-~D~llLaSDGL~d~~ls~eEi~~iv~~~l~~~~~ 242 (381)
T PTZ00224 165 -NRVDGDLAVSRAFGDRSFKVKGTGDYLEQKVIAVPDVTHLTCQS-NDFIILACDGVFEGNFSNEEVVAFVKEQLETCDD 242 (381)
T ss_pred -ccccCceeeecccCCcccccccccccccCcceeeeEEEEEECCC-CCEEEEECCCcCcCccCHHHHHHHHHHHHhcCCC
Confidence 35667789999999976542 355789999999987 8999999999999 7999999998863 358
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEEEEeC
Q 025334 226 ARSAARHLTEEALARNSSDDISCVVVKFN 254 (254)
Q Consensus 226 ~~~~a~~l~~~a~~~~~~Dn~Tvivv~~~ 254 (254)
++.+|+.|++.|+.+|+.||+||||+++.
T Consensus 243 ~~~aA~~Lv~~A~~rGs~DNITvIvV~~~ 271 (381)
T PTZ00224 243 LAVVAGRVCDEAIRRGSKDNISCLIVQLK 271 (381)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEEEee
Confidence 99999999999999999999999999874
No 4
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-42 Score=294.80 Aligned_cols=246 Identities=47% Similarity=0.697 Sum_probs=211.3
Q ss_pred EEEeeecCCCCCCCCCceEeeee----ccCCC-ceEEEEEEeCCCCChHHHHHHHHHHHHHHcCCCCCCC---HHHHHHH
Q 025334 7 HGYHLVKGKAGHPMEDYVVAQFK----QVDEN-ELGLFAIFDGHLSHEIPDFLRTHLFENILNEPNFWQD---PESAVRR 78 (254)
Q Consensus 7 ~~~~s~~G~~~~~neD~~~~~~~----~~~~~-~~~l~~V~DG~Gg~~~a~~~~~~~~~~l~~~~~~~~~---~~~~l~~ 78 (254)
.+..+.+|.++ .+||++..... ..... ...+|||||||||..+|.++.+.+...+.+...++.. ....+++
T Consensus 42 ~~~~~~~~~r~-~med~~~~~~~~~~~~~~~~~~~~ffgVfDGHGG~~~A~~~~~~L~~~l~~~~~~~~~~~~~~~a~~~ 120 (330)
T KOG0698|consen 42 GSLLSIRGRRR-KMEDRHVQLPDFLEEDVGGEQDTAFFGVFDGHGGDLAAKFAAKHLHKNLLEQLAFPKDRQDVKDALRR 120 (330)
T ss_pred eEEEecCCCCC-ccCcceeecccccccccCCCCceEEEEEEeCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHH
Confidence 34447777777 89999976443 12233 5899999999999999999999999999998877774 7899999
Q ss_pred HHH-HHHHHHHhhhcccCCCCccEEEEEEEeCCEEEEEEcCCCcEEEEeCC-eeeeCCCCCCCCc--hHHHHHhcCCeEe
Q 025334 79 AYC-ITDTTILEKAVDLGKGGSTAVTAILINCEKLVVANVGDSRAVICKNG-VAKQLSVDHEPSS--EREHIEGRGGFVS 154 (254)
Q Consensus 79 ~~~-~~~~~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~vGDsr~~~~~~~-~~~~lt~dh~~~~--e~~r~~~~g~~~~ 154 (254)
+|. ..+..+..........++|++++++.++.++|++|+||||+++.+.+ ...+||.||.|.. |+.|+++.||.+.
T Consensus 121 ~F~~~~D~~~~~~~~~~~~~gstav~~vi~~~~~l~vaN~GDSRaVl~~~~~~a~~Ls~DHkP~~~~E~~RI~~~GG~v~ 200 (330)
T KOG0698|consen 121 AFLTKTDSEFLEKREDNRSGGSTAVVALIKKGRKLYVANVGDSRAVLSRKGGVAVQLSVDHKPDREDERERIEAAGGRVS 200 (330)
T ss_pred HHHHHHHHHHHhhccCCCCCcceeeeeeEecCCEEEEEEcCCCcEEEecCCCeeeeCCCCCCCCcHHHHHHHHHcCCEEE
Confidence 999 59998887632233556666666666566999999999999999866 8999999999975 9999999999999
Q ss_pred cCCCCCCccCCccccccccCCcccc-CCcCCCCeEEEEEcCCCCeEEEEEcCCCcccCCHHHHHHHHHc----ccCHHHH
Q 025334 155 NFPGDVPRVDGQLAVARAFGDKSLK-MHLSSEPHVVMETIDDDTEFIILASDGLWKVMSNQDAADAIKN----IKDARSA 229 (254)
Q Consensus 155 ~~~~~~~~~~~~~~~tr~~G~~~~~-~~~~~~p~~~~~~l~~~~~~liL~SDG~~~~l~~~~i~~~~~~----~~~~~~~ 229 (254)
.... .+|.++.+.++|++||..+| .++.++|++....+...++||||+||||||.++.+|+.++++. ..++..+
T Consensus 201 ~~~~-~~Rv~G~LavsRa~GD~~~k~~~v~a~Pei~~~~~~~~deFLiLasDGiwDv~s~qeav~~V~~~~~~~~~~~~a 279 (330)
T KOG0698|consen 201 NWGG-VWRVNGVLAVSRAFGDVELKSQGVIAEPEIQQVKINSDDEFLILASDGIWDVVSNQEAVDLVRDELASISSPLAA 279 (330)
T ss_pred EcCC-cceEeceEEEeeecCCHHhcCCcEecCCceEEEEcCCCCcEEEEeCCchhcccChHHHHHHHHHHhhccccHHHH
Confidence 6544 56889999999999999999 7899999999999998888999999999999999999999988 5689999
Q ss_pred HHHHHHHHHhCCCCCCcEEEEEEeC
Q 025334 230 ARHLTEEALARNSSDDISCVVVKFN 254 (254)
Q Consensus 230 a~~l~~~a~~~~~~Dn~Tvivv~~~ 254 (254)
+..|.+.|..+++.||+|||||.|.
T Consensus 280 ~~~l~~~a~~~~s~DnitvvvV~l~ 304 (330)
T KOG0698|consen 280 AKLLATEALSRGSKDNITVVVVRLK 304 (330)
T ss_pred HHHHHHHHhhcCCCCCeEEEEEEec
Confidence 9999999999999999999999874
No 5
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=100.00 E-value=3.2e-44 Score=296.80 Aligned_cols=236 Identities=39% Similarity=0.596 Sum_probs=196.1
Q ss_pred eEEEeeecCCCCCCCCCceEeeeecc---CCCceEEEEEEeCCCCChHHHHHHHHHHHHHHcCCCCCC--CHHHHHHHHH
Q 025334 6 THGYHLVKGKAGHPMEDYVVAQFKQV---DENELGLFAIFDGHLSHEIPDFLRTHLFENILNEPNFWQ--DPESAVRRAY 80 (254)
Q Consensus 6 ~~~~~s~~G~~~~~neD~~~~~~~~~---~~~~~~l~~V~DG~Gg~~~a~~~~~~~~~~l~~~~~~~~--~~~~~l~~~~ 80 (254)
++|+.+.+|.|. .|||++++..+.. ......+|+|||||||..++.+++..+...+.+...... .+.+.|..+|
T Consensus 1 ~~~~~~~~g~r~-~~eD~~~~~~~~~~~~~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~~~~~~~al~~a~ 79 (254)
T PF00481_consen 1 DYGVSSMQGVRK-EMEDRHLIIQNFNSNSGNDNVSLFGVFDGHGGSEAAEYASQNLPEFLKENLSFNDGNDIEEALRQAF 79 (254)
T ss_dssp EEEEEEEECTSS-SHHEEEEEEEEETCCTTEEEEEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CcCeecCCCCCC-cccCEEEEecCccccCCCCCcEEEEEecCCCChhhHHHHHHHHHHHHHhhcccccccchhhccccee
Confidence 478999999999 9999998765432 457889999999999999999999999987766433222 4788899999
Q ss_pred HH-HHHHHHhhhcc-cCCCCccEEEEEEEeCCEEEEEEcCCCcEEEEeCCeee-eCCCCCCCCc--hHHHHHhcCCeEec
Q 025334 81 CI-TDTTILEKAVD-LGKGGSTAVTAILINCEKLVVANVGDSRAVICKNGVAK-QLSVDHEPSS--EREHIEGRGGFVSN 155 (254)
Q Consensus 81 ~~-~~~~l~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~vGDsr~~~~~~~~~~-~lt~dh~~~~--e~~r~~~~g~~~~~ 155 (254)
.. .++.+...... ....+|||++++++.++++|++|+||||+|+++.+... +||+||++.+ |+.|+++.|+.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~GsTa~v~li~~~~l~vanvGDSravl~~~~~~~~~Lt~dH~~~~~~E~~RI~~~gg~v~~ 159 (254)
T PF00481_consen 80 LAFTDESLYSDSENNESSKSGSTATVALIDGNKLYVANVGDSRAVLCRNGGIIKQLTRDHKPSNPDERERIRKAGGRVSE 159 (254)
T ss_dssp HHHHHHHHHHHHHHHTHTTSEEEEEEEEEETTEEEEEEESS-EEEEEETTEEEEESS---STTSHHHHHHHHHTT-GEEE
T ss_pred eecccccccccccccccccccccccccccccceeEEEeeeeeeeeeeeccccccccccccccchhhccceeecccccccc
Confidence 99 88887763321 34679999999999999999999999999999999888 9999999997 99999999999885
Q ss_pred CCCCCCccCCccccccccCCccccC----CcCCCCeEEEEEcCCCCeEEEEEcCCCcccCCHHHHHHHHHcccC----HH
Q 025334 156 FPGDVPRVDGQLAVARAFGDKSLKM----HLSSEPHVVMETIDDDTEFIILASDGLWKVMSNQDAADAIKNIKD----AR 227 (254)
Q Consensus 156 ~~~~~~~~~~~~~~tr~~G~~~~~~----~~~~~p~~~~~~l~~~~~~liL~SDG~~~~l~~~~i~~~~~~~~~----~~ 227 (254)
..+.++.+.+||++|+..+|+ ++.++|++...++.+.+++|||||||||++++++++.+++.+..+ |+
T Consensus 160 ----~~rv~g~l~~sRalGd~~~k~~~~~~v~~~P~i~~~~l~~~d~flvlaSDGlwd~l~~~ei~~~v~~~~~~~~~~~ 235 (254)
T PF00481_consen 160 ----NGRVNGVLAVSRALGDFDLKPPGKPGVIAEPDISEVDLTPDDEFLVLASDGLWDVLSNEEIVDIVRESLNSGRSPQ 235 (254)
T ss_dssp ----TEEETTTBSSSB-EE-GGGTTCTSSSSB---EEEEEEEBTTEEEEEEE-HHHHTTSHHHHHHHHHHHHHHHHSHHH
T ss_pred ----chhhhhccccccccccccccccccceeeeecccccccccccceEEEEEcccccccCCHHHHHHHHHHHHhcCCcHH
Confidence 357778889999999999998 899999999999999556999999999999999999999988654 99
Q ss_pred HHHHHHHHHHHhCCCCCCc
Q 025334 228 SAARHLTEEALARNSSDDI 246 (254)
Q Consensus 228 ~~a~~l~~~a~~~~~~Dn~ 246 (254)
.+|+.|+++|+++++.||+
T Consensus 236 ~~a~~L~~~A~~~gs~DNi 254 (254)
T PF00481_consen 236 EAAEKLVDEAIARGSKDNI 254 (254)
T ss_dssp HHHHHHHHHHHHTTHHSHE
T ss_pred HHHHHHHHHHHhcCCCCCC
Confidence 9999999999999999996
No 6
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-42 Score=273.08 Aligned_cols=245 Identities=30% Similarity=0.508 Sum_probs=214.9
Q ss_pred CceeEEEeeecCCCCCCCCCceEeeeec-cCCCceEEEEEEeCCCCChHHHHHHHHHHHHHHcCCCCCC--------CHH
Q 025334 3 KHVTHGYHLVKGKAGHPMEDYVVAQFKQ-VDENELGLFAIFDGHLSHEIPDFLRTHLFENILNEPNFWQ--------DPE 73 (254)
Q Consensus 3 ~~~~~~~~s~~G~~~~~neD~~~~~~~~-~~~~~~~l~~V~DG~Gg~~~a~~~~~~~~~~l~~~~~~~~--------~~~ 73 (254)
|.+.||.+|+||+|- .+||++.+.... ..-.++.+|+|||||.|+++|.+++..+++.+.+...+.. +.+
T Consensus 20 Nglryg~SSMQGWR~-eMEDah~A~~~l~~~l~dWSfFAVfDGHAGs~va~~c~~hLlehi~sse~F~~~~k~gsv~~~~ 98 (379)
T KOG0697|consen 20 NGLRYGVSSMQGWRV-EMEDAHTAVAGLPSPLEDWSFFAVFDGHAGSQVANHCAEHLLEHIISSEEFRGMTKNGSVENVE 98 (379)
T ss_pred Cceeeeeccccchhh-hhhhhhhhhhcCCCCccCceEEEEEcCccchHHHHHHHHHHHHHhhhhHHHhhhccCCcHHHHH
Confidence 678999999999999 999999753321 2457899999999999999999999999999987654433 567
Q ss_pred HHHHHHHHHHHHHHHhhhccc--CCCCccEEEEEEEeCCEEEEEEcCCCcEEEEeCCeeeeCCCCCCCCc--hHHHHHhc
Q 025334 74 SAVRRAYCITDTTILEKAVDL--GKGGSTAVTAILINCEKLVVANVGDSRAVICKNGVAKQLSVDHEPSS--EREHIEGR 149 (254)
Q Consensus 74 ~~l~~~~~~~~~~l~~~~~~~--~~~~~tt~~~~~~~~~~~~~~~vGDsr~~~~~~~~~~~lt~dh~~~~--e~~r~~~~ 149 (254)
..|+..|...++-........ ...+|||.+++++...++|++|+||||+.+.|+++...-|+||.|.+ |++|+..+
T Consensus 99 ~GIrtGFL~iDE~mr~~~~~~~~~drsGsTAVcv~vsp~h~y~~NcGDSRavl~rng~~~f~TqDHKP~~p~EkeRIqnA 178 (379)
T KOG0697|consen 99 KGIRTGFLSIDEIMRTLSDISKGSDRSGSTAVCVFVSPTHIYIINCGDSRAVLCRNGEVVFSTQDHKPYLPKEKERIQNA 178 (379)
T ss_pred hhHhhcceeHHHHHhhhhhhhcccccCCceEEEEEecCceEEEEecCcchhheecCCceEEeccCCCCCChHHHHHHhcC
Confidence 788888888887665543222 34589999999999999999999999999999999999999999997 99999999
Q ss_pred CCeEecCCCCCCccCCccccccccCCccccC---------CcCCCCeEEEEEcCCCCeEEEEEcCCCcccCCHHHHHHHH
Q 025334 150 GGFVSNFPGDVPRVDGQLAVARAFGDKSLKM---------HLSSEPHVVMETIDDDTEFIILASDGLWKVMSNQDAADAI 220 (254)
Q Consensus 150 g~~~~~~~~~~~~~~~~~~~tr~~G~~~~~~---------~~~~~p~~~~~~l~~~~~~liL~SDG~~~~l~~~~i~~~~ 220 (254)
||.+-.. |.||.+.++|++||..+|. .++++|++....-...++||||++||+||+++.+|+.+++
T Consensus 179 GGSVMIq-----RvNGsLAVSRAlGDydyK~v~~kgp~eQlVSPEPev~~~~R~eedeFivlACDGIwDVMtneelcefv 253 (379)
T KOG0697|consen 179 GGSVMIQ-----RVNGSLAVSRALGDYDYKNVPGKGPTEQLVSPEPEVYIIERSEEDEFIVLACDGIWDVMTNEELCEFV 253 (379)
T ss_pred CCeEEEE-----EecceeeeehhccCcccccCCCCCchhcccCCCCceEEeeccccCcEEEEEccchhhhcccHHHHHHH
Confidence 9977653 8899999999999999996 5999999999999887899999999999999999999998
Q ss_pred Hc----ccCHHHHHHHHHHHHHhCCCCCCcEEEEEEe
Q 025334 221 KN----IKDARSAARHLTEEALARNSSDDISCVVVKF 253 (254)
Q Consensus 221 ~~----~~~~~~~a~~l~~~a~~~~~~Dn~Tvivv~~ 253 (254)
.. ..+..++|..+++.++-.|+.||+|+|++-|
T Consensus 254 ~sRl~Vt~dL~~vcn~VvDtCLhKGSRDNMsivlvcf 290 (379)
T KOG0697|consen 254 KSRLEVTSDLEEVCNDVVDTCLHKGSRDNMSIVLVCF 290 (379)
T ss_pred HhhheecccHHHHHHHHHHHHHhccCccCceEEEEec
Confidence 76 3589999999999999999999999999854
No 7
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=9e-41 Score=275.86 Aligned_cols=242 Identities=45% Similarity=0.647 Sum_probs=205.0
Q ss_pred eeEEEeeecCCCCCCCCCceEeeeeccCCCceEEEEEEeCCCCChHHHHHHHHHHHHHHcCCCC-----CCCHHHHHHHH
Q 025334 5 VTHGYHLVKGKAGHPMEDYVVAQFKQVDENELGLFAIFDGHLSHEIPDFLRTHLFENILNEPNF-----WQDPESAVRRA 79 (254)
Q Consensus 5 ~~~~~~s~~G~~~~~neD~~~~~~~~~~~~~~~l~~V~DG~Gg~~~a~~~~~~~~~~l~~~~~~-----~~~~~~~l~~~ 79 (254)
+.++..+.+|.|. .|||++++.... ...+..+++|||||||+..++.+++.+.+.+.+.... ...+...|+.+
T Consensus 1 ~~~~~~~~~g~r~-~neD~~~~~~~~-~~~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 78 (254)
T cd00143 1 FSAGVSDKGGDRK-TNEDAVVIKPNL-NNEDGGLFGVFDGHGGHAAGEFASKLLVEELLEELEETLTLSEEDIEEALRKA 78 (254)
T ss_pred CceeeecCCCCCC-CCcceEEEeccC-CCCCcEEEEEEcCCChHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHH
Confidence 3567788888888 999999864221 1026799999999999999999999999988774432 24567889999
Q ss_pred HHHHHHHHHhhhcc--cCCCCccEEEEEEEeCCEEEEEEcCCCcEEEEeCCeeeeCCCCCCCCc--hHHHHHhcCCeEec
Q 025334 80 YCITDTTILEKAVD--LGKGGSTAVTAILINCEKLVVANVGDSRAVICKNGVAKQLSVDHEPSS--EREHIEGRGGFVSN 155 (254)
Q Consensus 80 ~~~~~~~l~~~~~~--~~~~~~tt~~~~~~~~~~~~~~~vGDsr~~~~~~~~~~~lt~dh~~~~--e~~r~~~~g~~~~~ 155 (254)
+..+++.+...... ....++||++++++.++.++++|+||||+|+++++.+.++|.||++.+ +..|+...++....
T Consensus 79 ~~~~~~~l~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~~~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~~ 158 (254)
T cd00143 79 FLRADEEILEEAQDEPDDARSGTTAVVALIRGNKLYVANVGDSRAVLCRNGEAVQLTKDHKPVNEEERERIEKAGGRVSN 158 (254)
T ss_pred HHHHHHHHHHhhhhccCCCCCCCcEEEEEEECCEEEEEEecCcEEEEEcCCceeEcCCCCCCcChHHHHHHHHcCCcEEe
Confidence 99999999876543 346789999999999999999999999999999999999999999996 77888888876541
Q ss_pred CCCCCCccCCccccccccCCccccCCcCCCCeEEEEEcCCCCeEEEEEcCCCcccCCHHHHHHHHHccc---CHHHHHHH
Q 025334 156 FPGDVPRVDGQLAVARAFGDKSLKMHLSSEPHVVMETIDDDTEFIILASDGLWKVMSNQDAADAIKNIK---DARSAARH 232 (254)
Q Consensus 156 ~~~~~~~~~~~~~~tr~~G~~~~~~~~~~~p~~~~~~l~~~~~~liL~SDG~~~~l~~~~i~~~~~~~~---~~~~~a~~ 232 (254)
.+.+..+.+|+++|...+|+.+.++|++...++.+.+++|+|||||||++++++++.+++.... ++.++|+.
T Consensus 159 -----~~~~~~~~~t~~lG~~~~~~~~~~~~~~~~~~l~~~~d~ill~SDG~~~~l~~~~i~~~~~~~~~~~~~~~~a~~ 233 (254)
T cd00143 159 -----GRVPGVLAVTRALGDFDLKPGVSAEPDVTVVKLTEDDDFLILASDGLWDVLSNQEAVDIVRSELAKEDLQEAAQE 233 (254)
T ss_pred -----CEEcCceeeccccCCccccCCEEcCCeEEEEEeCCCCcEEEEECCCCeeccChHHHHHHHHHHhcccCHHHHHHH
Confidence 2444566999999999877777899999999994449999999999999999999999999877 89999999
Q ss_pred HHHHHHhCCCCCCcEEEEEEe
Q 025334 233 LTEEALARNSSDDISCVVVKF 253 (254)
Q Consensus 233 l~~~a~~~~~~Dn~Tvivv~~ 253 (254)
|++.|.+++..||+|+|++++
T Consensus 234 l~~~a~~~~~~Dn~t~i~~~~ 254 (254)
T cd00143 234 LVDLALRRGSHDNITVVVVRL 254 (254)
T ss_pred HHHHHHhCCCCCCEEEEEEeC
Confidence 999999999999999999975
No 8
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=100.00 E-value=1.6e-40 Score=299.90 Aligned_cols=240 Identities=20% Similarity=0.276 Sum_probs=184.3
Q ss_pred ceeEEEeeecCCCCCCCCCceEeeeecc----C-C---CceEEEEEEeCCCCChHHHHHHHHHHHHHHc----CCCCCCC
Q 025334 4 HVTHGYHLVKGKAGHPMEDYVVAQFKQV----D-E---NELGLFAIFDGHLSHEIPDFLRTHLFENILN----EPNFWQD 71 (254)
Q Consensus 4 ~~~~~~~s~~G~~~~~neD~~~~~~~~~----~-~---~~~~l~~V~DG~Gg~~~a~~~~~~~~~~l~~----~~~~~~~ 71 (254)
.++++..|++|.+|+.|||++.+..... . + ....+|+|||||||+.+++.|++.+++.+.+ .......
T Consensus 374 ~l~~a~~Td~G~~R~~NEDa~~i~~~~~~~~~~~~~~~~~~~L~aVaDGmGGh~~GevAS~lAv~~L~~~~~~~~~~~~~ 453 (645)
T PRK14559 374 SLEDAGRTDVGRQRHHNEDYFGINTRIQKLENPHGRIVQARGLYILCDGMGGHAAGEVASALAVETLQQYFQQHWQDELP 453 (645)
T ss_pred eEEEEEECCCCCCCcccCCcccccccccccccccccccccceEEEEEeCCCCchhHHHHHHHHHHHHHHHHHhhhccccc
Confidence 4788999999997779999986532100 0 1 1357999999999998777777666666543 1111112
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc----cCCCCccEEEEEEEeCCEEEEEEcCCCcEEEE-eCCeeeeCCCCCCCCchHHHH
Q 025334 72 PESAVRRAYCITDTTILEKAVD----LGKGGSTAVTAILINCEKLVVANVGDSRAVIC-KNGVAKQLSVDHEPSSEREHI 146 (254)
Q Consensus 72 ~~~~l~~~~~~~~~~l~~~~~~----~~~~~~tt~~~~~~~~~~~~~~~vGDsr~~~~-~~~~~~~lt~dh~~~~e~~r~ 146 (254)
....+++++..+|..|.+.... ....+|||++++++.++++|++||||||+|++ |+|++.++|+||++.++ +
T Consensus 454 ~~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~~~~l~ianVGDSRaYli~r~g~l~QLT~DHs~~~~---l 530 (645)
T PRK14559 454 DEETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALVQDTQVAVAHVGDSRLYRVTRKGGLEQLTVDHEVGQR---E 530 (645)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEEECCEEEEEEecCceEEEEecCCeEEEeCCCCCHHHH---H
Confidence 3667999999999999875422 23469999999999999999999999999998 46899999999998764 4
Q ss_pred HhcCCeEecCCCCCCccCCccccccccCCccccCCcCCCCeEEEEEcCCCCeEEEEEcCCCccc--CCH---HHHHHHHH
Q 025334 147 EGRGGFVSNFPGDVPRVDGQLAVARAFGDKSLKMHLSSEPHVVMETIDDDTEFIILASDGLWKV--MSN---QDAADAIK 221 (254)
Q Consensus 147 ~~~g~~~~~~~~~~~~~~~~~~~tr~~G~~~~~~~~~~~p~~~~~~l~~~~~~liL~SDG~~~~--l~~---~~i~~~~~ 221 (254)
.+.| ....... .+++.+.+||++|+...+ ..+|++..+.+.+ +++|||||||||++ +.. +++..++.
T Consensus 531 v~~G-i~~~~a~---~~p~~~~LTrALG~~~~~---~l~Pdi~~~~L~~-gD~lLLCSDGL~D~~~ve~~~~~~l~~il~ 602 (645)
T PRK14559 531 IQRG-VEPQIAY---ARPDAYQLTQALGPRDNS---AIQPDIQFLEIEE-DTLLLLCSDGLSDNDLLETHWQTHLLPLLS 602 (645)
T ss_pred HHhC-CCHHHHh---cCcccceeeeccCCCCCC---cccceEEEEEcCC-CCEEEEECCCCCCCcccchHHHHHHHHHHh
Confidence 5555 2222222 223456999999986533 3689999999988 89999999999994 554 44566777
Q ss_pred cccCHHHHHHHHHHHHHhCCCCCCcEEEEEEeC
Q 025334 222 NIKDARSAARHLTEEALARNSSDDISCVVVKFN 254 (254)
Q Consensus 222 ~~~~~~~~a~~l~~~a~~~~~~Dn~Tvivv~~~ 254 (254)
...++.++++.|++.|+.+++.||+|+||++++
T Consensus 603 ~~~~l~~aa~~Li~~Al~~gg~DNITvIvV~l~ 635 (645)
T PRK14559 603 SSANLDQGLNKLIDLANQYNGHDNITAILVRLK 635 (645)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCcEEEEEEEec
Confidence 767999999999999999999999999999874
No 9
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=6.9e-40 Score=270.97 Aligned_cols=241 Identities=44% Similarity=0.637 Sum_probs=204.9
Q ss_pred CceeEEEeeecCCCCCCCCCceEeeeeccCCCceEEEEEEeCCCCChHHHHHHHHHHHHHHcCCCCCC----CHHHHHHH
Q 025334 3 KHVTHGYHLVKGKAGHPMEDYVVAQFKQVDENELGLFAIFDGHLSHEIPDFLRTHLFENILNEPNFWQ----DPESAVRR 78 (254)
Q Consensus 3 ~~~~~~~~s~~G~~~~~neD~~~~~~~~~~~~~~~l~~V~DG~Gg~~~a~~~~~~~~~~l~~~~~~~~----~~~~~l~~ 78 (254)
..+.+++.+.+|.|. +|||++++... ...+..+++|||||||..+|+++++.+.+.+.+...... .+...|++
T Consensus 4 ~~~~~~~~~~~~~r~-~neD~~~~~~~--~~~~~~~~~v~DG~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (255)
T smart00332 4 LGLRYGLSSMQGVRK-PMEDAHVITPD--LSDSGAFFGVFDGHGGSEAAKFLSKNLPEILAEELIKHKDELEDVEEALRK 80 (255)
T ss_pred CceeEEEecCCCCCC-CCcceEEEecc--CCCCeEEEEEEeCCCcHHHHHHHHHHHHHHHHHhHhhcccchhHHHHHHHH
Confidence 456788877767666 99999986432 125688999999999999999999999998887543332 47888999
Q ss_pred HHHHHHHHHHhhhccc--CCCCccEEEEEEEeCCEEEEEEcCCCcEEEEeCCeeeeCCCCCCCCc--hHHHHHhcCCeEe
Q 025334 79 AYCITDTTILEKAVDL--GKGGSTAVTAILINCEKLVVANVGDSRAVICKNGVAKQLSVDHEPSS--EREHIEGRGGFVS 154 (254)
Q Consensus 79 ~~~~~~~~l~~~~~~~--~~~~~tt~~~~~~~~~~~~~~~vGDsr~~~~~~~~~~~lt~dh~~~~--e~~r~~~~g~~~~ 154 (254)
++..+++.+....... ...++||++++++.+++++++|+||||+|+++++++.++|.||++.+ |..|+...++.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~y~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~ 160 (255)
T smart00332 81 AFLKTDEEILEELESLEEDAGSGSTAVVALISGNKLYVANVGDSRAVLCRNGKAVQLTEDHKPSNEDERARIEAAGGFVI 160 (255)
T ss_pred HHHHHHHHHHHhhhhccCCCCCCccEEEEEEECCEEEEEeccCceEEEEeCCceeEcCCCCCCcCHHHHHHHHHcCCEEE
Confidence 9999999998765443 25689999999999999999999999999999999999999999976 7778888887665
Q ss_pred cCCCCCCccCCccccccccCCccccCCcCCCCeEEEEEcCCCCeEEEEEcCCCcccCCHHHHHHHHHccc---CHHHHHH
Q 025334 155 NFPGDVPRVDGQLAVARAFGDKSLKMHLSSEPHVVMETIDDDTEFIILASDGLWKVMSNQDAADAIKNIK---DARSAAR 231 (254)
Q Consensus 155 ~~~~~~~~~~~~~~~tr~~G~~~~~~~~~~~p~~~~~~l~~~~~~liL~SDG~~~~l~~~~i~~~~~~~~---~~~~~a~ 231 (254)
.. +.+..+.+||++|...+++.+.++|++...++...+++|||||||||++++++++.+++.+.. ++.++++
T Consensus 161 ~~-----~~~~~~~lt~~~g~~~~~~~i~~~p~~~~~~~~~~~d~ill~SDGv~~~l~~~~i~~~~~~~~~~~~~~~~~~ 235 (255)
T smart00332 161 NG-----RVNGVLALSRAIGDFFLKPYVSAEPDVTVVELTEKDDFLILASDGLWDVLSNQEVVDIVRKHLSKSDPEEAAK 235 (255)
T ss_pred CC-----eECCeEecccccCCHhhcCCeEeeeEEEEEEecCCCcEEEEECCccccCCCHHHHHHHHHHHhhcCCHHHHHH
Confidence 32 344557999999999988888899999999973339999999999999999999999998866 5999999
Q ss_pred HHHHHHHhCCCCCCcEEEEE
Q 025334 232 HLTEEALARNSSDDISCVVV 251 (254)
Q Consensus 232 ~l~~~a~~~~~~Dn~Tvivv 251 (254)
.|.+.|.+++..||+|+|++
T Consensus 236 ~l~~~a~~~~~~Dn~T~ivv 255 (255)
T smart00332 236 RLIDLALARGSKDNITVIVV 255 (255)
T ss_pred HHHHHHHHcCCCCCeEEEEC
Confidence 99999999999999999985
No 10
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-34 Score=236.21 Aligned_cols=156 Identities=34% Similarity=0.638 Sum_probs=140.9
Q ss_pred CCCCccEEEEEEEeCCEEEEEEcCCCcEEEEeCCeeeeCCCCCCCCc--hHHHHHhcCCeEecCCCCCCccCCccccccc
Q 025334 95 GKGGSTAVTAILINCEKLVVANVGDSRAVICKNGVAKQLSVDHEPSS--EREHIEGRGGFVSNFPGDVPRVDGQLAVARA 172 (254)
Q Consensus 95 ~~~~~tt~~~~~~~~~~~~~~~vGDsr~~~~~~~~~~~lt~dh~~~~--e~~r~~~~g~~~~~~~~~~~~~~~~~~~tr~ 172 (254)
...+|||.++|++.+++++++|.||||+++.|.|+..-++.||.|.. |..||...||.+.- .+|.||.+.++|+
T Consensus 327 G~DSGtTAvVcLv~g~~liVANAGDSRcV~sr~GkAvdmS~DHKPEDevE~~RI~~AGG~vtl----DGRVNGGLNLSRA 402 (542)
T KOG0699|consen 327 GEDSGTTAVVCLVGGDKLIVANAGDSRCVLSRNGKAVDMSVDHKPEDEVETNRIHAAGGQVTL----DGRVNGGLNLSRA 402 (542)
T ss_pred CCCCCceEEEEEecCceEEEecCCCcceEEecCCceeecccCCCcccHHHHHHHHhcCCeEee----cceecCccchhhh
Confidence 45689999999999999999999999999999999999999999997 89999999999883 2589999999999
Q ss_pred cCCccccC---------CcCCCCeEEEEEcCCCCeEEEEEcCCCcccCCHHHHHHHHHc----ccCHHHHHHHHHHHHHh
Q 025334 173 FGDKSLKM---------HLSSEPHVVMETIDDDTEFIILASDGLWKVMSNQDAADAIKN----IKDARSAARHLTEEALA 239 (254)
Q Consensus 173 ~G~~~~~~---------~~~~~p~~~~~~l~~~~~~liL~SDG~~~~l~~~~i~~~~~~----~~~~~~~a~~l~~~a~~ 239 (254)
+|+..||. .+++-|++++..+.+.++|+|+++||||++++.+++.++++. .+....+|+.|++.++.
T Consensus 403 ~GDHaYK~N~~Lp~eEQMIsALPDiK~l~lTpedEFmVvACDGIWN~MsSqeVVdFvr~~l~~n~~ls~iceeL~D~CLA 482 (542)
T KOG0699|consen 403 FGDHAYKKNQELPLEEQMISALPDIKILALTPEDEFMVVACDGIWNSMSSQEVVDFVRDLLAKNSSLSEICEELCDACLA 482 (542)
T ss_pred hhhhhhhcccCCChHHHHhhhcccceeEeecCcccEEEEEccchhhhccHHHHHHHHHHHHhcCchHHHHHHHHHHhhcC
Confidence 99999996 378899999999999899999999999999999999888765 45788999999999987
Q ss_pred CC------CCCCcEEEEEEeC
Q 025334 240 RN------SSDDISCVVVKFN 254 (254)
Q Consensus 240 ~~------~~Dn~Tvivv~~~ 254 (254)
.. ..||+|||++.|+
T Consensus 483 p~T~GDGTGCDNMT~ii~~Fk 503 (542)
T KOG0699|consen 483 PSTDGDGTGCDNMTVIITTFK 503 (542)
T ss_pred CCCCCCCcCCCcceEEEEEec
Confidence 42 4799999999874
No 11
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=99.98 E-value=3e-31 Score=221.83 Aligned_cols=220 Identities=36% Similarity=0.474 Sum_probs=172.4
Q ss_pred CCCceEeeeeccCCCceEEEEEEeCCCCChHHHHHHHHHHHHHHcC------------C-C-------------------
Q 025334 20 MEDYVVAQFKQVDENELGLFAIFDGHLSHEIPDFLRTHLFENILNE------------P-N------------------- 67 (254)
Q Consensus 20 neD~~~~~~~~~~~~~~~l~~V~DG~Gg~~~a~~~~~~~~~~l~~~------------~-~------------------- 67 (254)
-||..-+.. ...+++.++||+|||||.++++++++.+..++..+ . .
T Consensus 85 ~edrv~~~~--s~~~~~~fvGIyDGhgGp~as~~v~~~L~~~v~~~L~~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~~ 162 (390)
T KOG0700|consen 85 EEDRVSVAV--SEENGWLFVGIYDGHGGPDASRFLSDHLYPYVARELQGLLWQDEERFPSEYKSEELEHLLVYWKQLSSA 162 (390)
T ss_pred ccCcceeee--eccCCeEEEEEecCCCCccHHHHHHHHHHHHHHHHhhhhhhhhccccccccccchhhhhhhhhhccccc
Confidence 355553221 23678999999999999999999999999988711 0 0
Q ss_pred -C-CCCHHHHHHHHHHHHHHHHHhhhccc------CCCCccEEEEEEEeCCEEEEEEcCCCcEEEEe---CC---eeeeC
Q 025334 68 -F-WQDPESAVRRAYCITDTTILEKAVDL------GKGGSTAVTAILINCEKLVVANVGDSRAVICK---NG---VAKQL 133 (254)
Q Consensus 68 -~-~~~~~~~l~~~~~~~~~~l~~~~~~~------~~~~~tt~~~~~~~~~~~~~~~vGDsr~~~~~---~~---~~~~l 133 (254)
. .....+.|.++|.+..+.+.+..... ...+|+++++.++.+..+|++|+||||+.+-+ ++ ...||
T Consensus 163 ~~~~~~v~~al~~Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~~~~~~~~A~qL 242 (390)
T KOG0700|consen 163 DQRHGDVLEALSKAFEATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVENNGSWLVAVQL 242 (390)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCeEEEEecCcchhhhceecCCCCeEEEEec
Confidence 1 34567889999999999887554222 23467777777888999999999999999853 33 57899
Q ss_pred CCCCCCCc--hHHHHHhcCCeEec-CCCCCCccCCccccccccCCcccc---------------------CCcCCCCeEE
Q 025334 134 SVDHEPSS--EREHIEGRGGFVSN-FPGDVPRVDGQLAVARAFGDKSLK---------------------MHLSSEPHVV 189 (254)
Q Consensus 134 t~dh~~~~--e~~r~~~~g~~~~~-~~~~~~~~~~~~~~tr~~G~~~~~---------------------~~~~~~p~~~ 189 (254)
|.||+..+ |..||+......+. --..++|..|.+++||++|+..+| |+++++|++.
T Consensus 243 S~dHn~~ne~Ev~Rir~eHPdd~~~vv~~~~RvkG~L~vsRAfGd~~lK~~~~n~e~l~~~fr~~~~~t~PyltaeP~i~ 322 (390)
T KOG0700|consen 243 STDHNASNEDEVRRIRSEHPDDPHIVVNKHWRVKGILQVSRAFGDGYLKWPEFNQEPLLEKFRIPYIGTPPYLTAEPSIT 322 (390)
T ss_pred ChhhccccHHHHHHHHHhCCCCcceEeeccceeeEEEEeeeeccceeecchhhccchhHhhcCCCCCCCCCceeccceEE
Confidence 99999997 88888887652221 123346888999999999999988 3699999999
Q ss_pred EEEcCCCCeEEEEEcCCCcccCCHHHHHHHHHcc----cCHHHHHHHHHHHHHhCC
Q 025334 190 METIDDDTEFIILASDGLWKVMSNQDAADAIKNI----KDARSAARHLTEEALARN 241 (254)
Q Consensus 190 ~~~l~~~~~~liL~SDG~~~~l~~~~i~~~~~~~----~~~~~~a~~l~~~a~~~~ 241 (254)
.+++.+.+.||||+|||+|++++++|+..++.+. ..-..+|+.|++.|+.+.
T Consensus 323 ~HrL~p~DkFLIlASDGLwE~lsNeeaV~lV~~~i~~~~pd~~~A~hLIr~aL~~a 378 (390)
T KOG0700|consen 323 HHKLTPNDKFLILASDGLWEYLSNEEAVSLVHEFISGKFPDGNPATHLIRHALGRA 378 (390)
T ss_pred EEEcCCCCeEEEEeccchhhhcChHHHHHHHHHhhccCCCCCCHHHHHHHHHHhhh
Confidence 9999998899999999999999999999999874 233577899999887643
No 12
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.95 E-value=3.2e-26 Score=185.78 Aligned_cols=196 Identities=20% Similarity=0.248 Sum_probs=141.2
Q ss_pred CCCCceEeeeeccCCCceEEEEEEeCCCCCh--------HHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHhh
Q 025334 19 PMEDYVVAQFKQVDENELGLFAIFDGHLSHE--------IPDFLRTHLFENILNEPNFWQDPESAVRRAYCITDTTILEK 90 (254)
Q Consensus 19 ~neD~~~~~~~~~~~~~~~l~~V~DG~Gg~~--------~a~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 90 (254)
.=||+|++ ..+....+.|||||+||+. .++.+.+.+.+.+.+....+.++...|..++.+.-++
T Consensus 90 ~GEDa~Fv----ss~~~~~v~GVADGVGGWa~~GiDpg~fS~eLM~~ce~~v~~~~~~~~~P~~lL~~ay~~l~~~---- 161 (330)
T KOG1379|consen 90 GGEDAWFV----SSNPHAIVMGVADGVGGWAEYGIDPGAFSRELMSNCERLVQNSDFNPSDPVNLLEKAYAELKSQ---- 161 (330)
T ss_pred CCCcceee----ccCcccceEEEccccchHhhcCcCHHHHHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHhhc----
Confidence 45999997 4446778999999999983 4444444444444455555567887777776654332
Q ss_pred hcccCCCCccEEEEEEEe--CCEEEEEEcCCCcEEEEeCCeeeeCCCCCCCCchHHHHHhcCCeEecCCCCCCccCCccc
Q 025334 91 AVDLGKGGSTAVTAILIN--CEKLVVANVGDSRAVICKNGVAKQLSVDHEPSSEREHIEGRGGFVSNFPGDVPRVDGQLA 168 (254)
Q Consensus 91 ~~~~~~~~~tt~~~~~~~--~~~~~~~~vGDsr~~~~~~~~~~~lt~dh~~~~e~~r~~~~g~~~~~~~~~~~~~~~~~~ 168 (254)
... .-+++|.+++++. ++++|++|+|||...++|+|++...|..+.. +.|..++
T Consensus 162 -~~~-~vGSSTAcI~~l~~~~~~Lh~aNLGDSGF~VvR~G~vv~~S~~Q~H----------------------~FN~PyQ 217 (330)
T KOG1379|consen 162 -KVP-IVGSSTACILALDRENGKLHTANLGDSGFLVVREGKVVFRSPEQQH----------------------YFNTPYQ 217 (330)
T ss_pred -CCC-CCCcceeeeeeeecCCCeEEEeeccCcceEEEECCEEEEcCchhee----------------------ccCCcee
Confidence 111 2355555555555 8999999999999999999999988877631 2222223
Q ss_pred cccc-------cCCccccCCcCCCCeEEEEEcCCCCeEEEEEcCCCcccCCHHHHHHHHHcc-----cCHHHHHHHHHHH
Q 025334 169 VARA-------FGDKSLKMHLSSEPHVVMETIDDDTEFIILASDGLWKVMSNQDAADAIKNI-----KDARSAARHLTEE 236 (254)
Q Consensus 169 ~tr~-------~G~~~~~~~~~~~p~~~~~~l~~~~~~liL~SDG~~~~l~~~~i~~~~~~~-----~~~~~~a~~l~~~ 236 (254)
++.- +++. .-..+...+++.. ||+|||+|||+||++.+++|..++... .+++..|++|.+.
T Consensus 218 Ls~~p~~~~~~~~d~------p~~ad~~~~~v~~-GDvIilATDGlfDNl~e~~Il~il~~~~~~~~~~lq~~A~~ia~~ 290 (330)
T KOG1379|consen 218 LSSPPEGYSSYISDV------PDSADVTSFDVQK-GDVIILATDGLFDNLPEKEILSILKGLDARGNLDLQVTAQKIAEK 290 (330)
T ss_pred eccCCccccccccCC------ccccceEEEeccC-CCEEEEecccccccccHHHHHHHHHHhhccccccHHHHHHHHHHH
Confidence 3222 3332 3466788899999 999999999999999999999999763 3789999999998
Q ss_pred HHhC-----------------------CCCCCcEEEEEEe
Q 025334 237 ALAR-----------------------NSSDDISCVVVKF 253 (254)
Q Consensus 237 a~~~-----------------------~~~Dn~Tvivv~~ 253 (254)
|... |++||||+||..+
T Consensus 291 Ar~ls~d~~~~SPFA~~Ar~~g~~~~gGK~DdITvvls~v 330 (330)
T KOG1379|consen 291 ARELSRDPKFQSPFAQAAREHGFKAYGGKPDDITVVLSSV 330 (330)
T ss_pred HHHhccCcCcCChHHHHHHHhCcccCCCCcccEEEEEecC
Confidence 8642 4699999999753
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.93 E-value=6.7e-25 Score=199.23 Aligned_cols=242 Identities=24% Similarity=0.376 Sum_probs=206.5
Q ss_pred ceeEEEeeecCCCCCCCCCceEeeeeccCCCceEEEEEEeCCCCChHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Q 025334 4 HVTHGYHLVKGKAGHPMEDYVVAQFKQVDENELGLFAIFDGHLSHEIPDFLRTHLFENILNEPNFWQDPESAVRRAYCIT 83 (254)
Q Consensus 4 ~~~~~~~s~~G~~~~~neD~~~~~~~~~~~~~~~l~~V~DG~Gg~~~a~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~ 83 (254)
.|+||++...|+|.+ +--+.. ++..+-.++...||++||-+..+..+++...+.+.+.++.....+..+.++++|...
T Consensus 521 ~~t~Gv~~~~gqrnk-~c~~~~-~v~nf~~~~~a~~g~~dgs~n~~v~~~vq~~ma~~L~eev~~~~~et~~mr~~fl~~ 598 (1081)
T KOG0618|consen 521 LWTYGVAGVSGQRNK-VCSRAV-WVENFFLNPQATFGCFDGSRNSRVLSLVQDTMASYLAEEVQLYGNETEQMRNTFLRL 598 (1081)
T ss_pred heeeccchhcccccc-hhhhhh-hhhhcccCCcceEEEEcCCCchhHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 578999999999994 444433 444455677899999999999999999999999999987776666678899999999
Q ss_pred HHHHHhhhcccCCCCccEEEEEEEeC-------CEEEEEEcCCCcEEEEeCCeeeeCCCCCCCC---chHHHHHhcCCeE
Q 025334 84 DTTILEKAVDLGKGGSTAVTAILINC-------EKLVVANVGDSRAVICKNGVAKQLSVDHEPS---SEREHIEGRGGFV 153 (254)
Q Consensus 84 ~~~l~~~~~~~~~~~~tt~~~~~~~~-------~~~~~~~vGDsr~~~~~~~~~~~lt~dh~~~---~e~~r~~~~g~~~ 153 (254)
++++...... .++..+.+-+.++ .+++.||+|+|++.+.++|...++|+-..+. .|.+|+++.+|++
T Consensus 599 ~rklg~~g~~---lg~~~~~~~i~~d~~~~asS~~l~~Anvg~c~avls~ng~~~p~t~~~~~~v~~eE~~RI~~~~g~i 675 (1081)
T KOG0618|consen 599 NRKLGEEGQV---LGGSVVLCQIVEDSLSPASSKTLFAANVGTCMAVLSRNGKPLPTTRSPMLEVDREEYKRIVDSKGFI 675 (1081)
T ss_pred hhhhhhhhcc---ccchhhheeecccccCcccchhhhHhhhccchhhhhhcCCcCcccccccccCCHHHHHHHHHhcCee
Confidence 9999665543 2333333333332 4788999999999999999988887766444 3999999999999
Q ss_pred ecCCCCCCccCCccccccccCCccccCCcCCCCeEEEEEcCCCCeEEEEEcCCCcccCCHHHHHHHHHcccCHHHHHHHH
Q 025334 154 SNFPGDVPRVDGQLAVARAFGDKSLKMHLSSEPHVVMETIDDDTEFIILASDGLWKVMSNQDAADAIKNIKDARSAARHL 233 (254)
Q Consensus 154 ~~~~~~~~~~~~~~~~tr~~G~~~~~~~~~~~p~~~~~~l~~~~~~liL~SDG~~~~l~~~~i~~~~~~~~~~~~~a~~l 233 (254)
.+. .+.+|+...||++|.+...|++.+.|++....+.+.+++||+++-++|++++.+++.+.+++..+|-.+|++|
T Consensus 676 ~ed----~k~ngvt~~tR~iG~~~l~P~v~p~Phv~~~~Lt~qdE~LIvgn~~lW~~Lsid~a~~~vRn~~dpL~AAkKL 751 (1081)
T KOG0618|consen 676 TED----NKLNGVTSSTRAIGPFSLFPHVLPDPHVSVVILTEQDEFLIVGNKQLWSVLSIDTAVDAVRNVEDPLLAAKKL 751 (1081)
T ss_pred cCC----CeeeceeeeeeecccccccccccCCCceeeEecccCceEEEEcchHHhhhccHHHHHHHHhcCCchHHHHHHH
Confidence 952 4778888999999999999999999999999999989999999999999999999999999889999999999
Q ss_pred HHHHHhCCCCCCcEEEEEEeC
Q 025334 234 TEEALARNSSDDISCVVVKFN 254 (254)
Q Consensus 234 ~~~a~~~~~~Dn~Tvivv~~~ 254 (254)
++.|.++|+.||++++||+++
T Consensus 752 ~d~AqSYgc~~nv~vlVv~l~ 772 (1081)
T KOG0618|consen 752 CDLAQSYGCAENVSVLVVRLN 772 (1081)
T ss_pred HHHHHhcccccCeeEEEEEee
Confidence 999999999999999999874
No 14
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.93 E-value=2.7e-24 Score=175.09 Aligned_cols=222 Identities=29% Similarity=0.425 Sum_probs=166.2
Q ss_pred CCCceEEEEEEeCCCCChHHHHHHHHHHHHHHcCC-------------------------C--------CC-C------C
Q 025334 32 DENELGLFAIFDGHLSHEIPDFLRTHLFENILNEP-------------------------N--------FW-Q------D 71 (254)
Q Consensus 32 ~~~~~~l~~V~DG~Gg~~~a~~~~~~~~~~l~~~~-------------------------~--------~~-~------~ 71 (254)
...++.+|.+||||.|+.+|..+++.+.+.+.+.. . +. . -
T Consensus 140 ~~~~~~~~slfdghags~~avvAsrll~~hI~~ql~~vvd~i~~~~~~~~~~~g~~~~~s~~s~~~~~~~~ek~Ir~E~L 219 (493)
T KOG1323|consen 140 PRADGALFSLFDGHAGSAVAVVASRLLHRHIKEQLCEVVDTILHMDRHENLNFGKHRSESSYSMSEMSREDEKRIRHEHL 219 (493)
T ss_pred CCCcceeeeeecCCCcchHHHHHHHHHHHhhhHHHHHHHHHHhhhccccccccccccccCCcccccccchhhccCchHHh
Confidence 34678999999999999999888887776654310 0 00 0 1
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCCccEEEEEEEeCCEEEEEEcCCCcEEEEeCCeeeeCCCCCCCCchHHHHHhcCC
Q 025334 72 PESAVRRAYCITDTTILEKAVDLGKGGSTAVTAILINCEKLVVANVGDSRAVICKNGVAKQLSVDHEPSSEREHIEGRGG 151 (254)
Q Consensus 72 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~vGDsr~~~~~~~~~~~lt~dh~~~~e~~r~~~~g~ 151 (254)
..-.|..+|+..++.|..........+|||+++++.--+++|++|.||||++++|++++.+++++-+|..|++|+...+-
T Consensus 220 ViGAlEsAFqemDeqiarer~~~~~~GGCtalvvi~llGKlYvaNAGDsRAIlVrndeirplS~efTPetERqRlQ~Laf 299 (493)
T KOG1323|consen 220 VIGALESAFQEMDEQIARERQVWRLPGGCTALVVIVLLGKLYVANAGDSRAILVRNDEIRPLSKEFTPETERQRLQELAF 299 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeeeccceEEccCCCceEEEEecCCeeecccccCcHHHHHHHHHHhh
Confidence 13457778888888887666655667888888888889999999999999999999999999999999999999987752
Q ss_pred eEecC--------------------------------------------------CCCCCccCCccccccccCCcccc--
Q 025334 152 FVSNF--------------------------------------------------PGDVPRVDGQLAVARAFGDKSLK-- 179 (254)
Q Consensus 152 ~~~~~--------------------------------------------------~~~~~~~~~~~~~tr~~G~~~~~-- 179 (254)
..++. .+...+.-....+||-+||..++
T Consensus 300 ~~PeLlgneFtrLEfprRl~~~dLgqrvLyRD~~MtGWayKtve~~DLr~pLI~gegrkaRll~TigVsRGlGDH~Lkv~ 379 (493)
T KOG1323|consen 300 RNPELLGNEFTRLEFPRRLTIKDLGQRVLYRDWNMTGWAYKTVEEEDLRFPLISGEGRKARLLATIGVSRGLGDHHLKVV 379 (493)
T ss_pred cChHhhcccccceecccccChhhhcceeeeeccccccceeehhhhhcCCcceecccchhhhhhhhheeccccCcceeeee
Confidence 21110 00001112335688999988776
Q ss_pred -------CCcCCCCeEEEEEcCC----CCeEEEEEcCCCcccCCHHHHHHHHHcc------cCH---HHHHHHHHHHHHh
Q 025334 180 -------MHLSSEPHVVMETIDD----DTEFIILASDGLWKVMSNQDAADAIKNI------KDA---RSAARHLTEEALA 239 (254)
Q Consensus 180 -------~~~~~~p~~~~~~l~~----~~~~liL~SDG~~~~l~~~~i~~~~~~~------~~~---~~~a~~l~~~a~~ 239 (254)
|.+++.|++++..+.+ .+|++||+|||+||+++++++..+++.. .+| ..+|+.|+..|-.
T Consensus 380 dsnl~iKPFLssvPeV~V~dl~q~e~~~DdVvilatDGLWDVlSneeva~~Vrs~L~~~dp~Dp~RYt~aaqdlva~arg 459 (493)
T KOG1323|consen 380 DSNLSIKPFLSSVPEVRVYDLRQYEHLTDDVVILATDGLWDVLSNEEVALIVRSFLPSTDPADPSRYTQAAQDLVAAARG 459 (493)
T ss_pred cCCcccchhhhcCCeeEEEehhhhccCCCcEEEEecCchhhhcccHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHhcC
Confidence 4588899999988763 3789999999999999999999998763 233 3567888777642
Q ss_pred C-------------CCCCCcEEEEEEe
Q 025334 240 R-------------NSSDDISCVVVKF 253 (254)
Q Consensus 240 ~-------------~~~Dn~Tvivv~~ 253 (254)
. ++.||+||-|+-+
T Consensus 460 ~~k~rgWr~~n~~lgSgDDIsVfVIPL 486 (493)
T KOG1323|consen 460 QQKDRGWRMNNGGLGSGDDISVFVIPL 486 (493)
T ss_pred ccCCCceeccCCCcCCCCceEEEEEec
Confidence 1 4679999999865
No 15
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.89 E-value=2.2e-22 Score=162.08 Aligned_cols=178 Identities=19% Similarity=0.259 Sum_probs=97.6
Q ss_pred eeecCCCCCCCCCceEeeeeccCCCceEEEEEEeCCCCChHHHHHH----HHHHHHHHcCCCCCCC--HHHHHHHHHHHH
Q 025334 10 HLVKGKAGHPMEDYVVAQFKQVDENELGLFAIFDGHLSHEIPDFLR----THLFENILNEPNFWQD--PESAVRRAYCIT 83 (254)
Q Consensus 10 ~s~~G~~~~~neD~~~~~~~~~~~~~~~l~~V~DG~Gg~~~a~~~~----~~~~~~l~~~~~~~~~--~~~~l~~~~~~~ 83 (254)
.+++|.+. +|||++.+. ...+..+++||||+|++..+..++ +.+...+.+....... ....++.+...+
T Consensus 3 ~sh~~~~~-~nqD~~~~~----~~~~~~~~aVaDG~g~~~~~~~aa~~av~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 77 (212)
T PF13672_consen 3 RSHRGRGA-PNQDAFGIR----TDDDGNLAAVADGVGGSPYGEEAAQLAVETFINYLKKLLSQESPSSIEALIRAIKKEI 77 (212)
T ss_dssp ----TTSS-S--EEEEEE-----TCCTCEEEEEEEESTTTHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCC-CCCCCEEee----eCCCCEEEEEEECCCCCchhHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 47888888 999999853 234456779999999886555544 4444444444332221 122333333333
Q ss_pred HHHH-----HhhhcccCCCCccEEEEEEEeCCEEEEEEcCCCcEEE-EeCCeeeeCCCCCCCCchHHHHHhcCCeEecCC
Q 025334 84 DTTI-----LEKAVDLGKGGSTAVTAILINCEKLVVANVGDSRAVI-CKNGVAKQLSVDHEPSSEREHIEGRGGFVSNFP 157 (254)
Q Consensus 84 ~~~l-----~~~~~~~~~~~~tt~~~~~~~~~~~~~~~vGDsr~~~-~~~~~~~~lt~dh~~~~e~~r~~~~g~~~~~~~ 157 (254)
...+ ..........++||++++++.++.++++|+||||+|+ .+++.+.+++.+|+. +.. .
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~tTl~~~v~~~~~~~~~~iGD~~i~~~~~~g~~~~l~~~~~~--~~~---~--------- 143 (212)
T PF13672_consen 78 LSIVRAFQSAKQADLELRDYGTTLLALVIDPDKVYIFNIGDSRIYVIRRNGEIQQLTDDHSG--EYP---N--------- 143 (212)
T ss_dssp HHHH----HHHHHSGGGTT-EE-EEEEEEETTEEEEEEESS-EEEEEEETTEEEE-S---BH--HHH---H---------
T ss_pred HHHhhhhhhhhhccccccccCceEEEEEEECCEEEEEEECCCeEEEEECCCEEEEcCCCccc--hhh---h---------
Confidence 3221 1112333467899999999999999999999999965 589999999999951 110 0
Q ss_pred CCCCccCCccccccccCCccccCCcCCCCeEEEEEcCCCCeEEEEEcCCCcccCCHHH-HHHHHHc
Q 025334 158 GDVPRVDGQLAVARAFGDKSLKMHLSSEPHVVMETIDDDTEFIILASDGLWKVMSNQD-AADAIKN 222 (254)
Q Consensus 158 ~~~~~~~~~~~~tr~~G~~~~~~~~~~~p~~~~~~l~~~~~~liL~SDG~~~~l~~~~-i~~~~~~ 222 (254)
. +..+..... ....++..+++.+ ++.|+|||||||+.+...+ +..++..
T Consensus 144 ----------~-~~~~~~~~~----~~~~~~~~~~~~~-~d~ilL~SDG~~~~l~~~~~~~~~l~~ 193 (212)
T PF13672_consen 144 ----------Q-TRSLTGDDP----EPDVQYGSIPLEE-GDVILLCSDGVWDNLRSYEDLEQFLKD 193 (212)
T ss_dssp ----------C-TTSCCHHCC----CTETEEEEEE--T-T-EEEEE-HHHHTTS-HHHHHHHH---
T ss_pred ----------h-hhccCcccc----ccCCeEEEEEcCC-CCEEEEECcCccccCCCHHHHHHHhhh
Confidence 1 222222110 2344666677777 9999999999999998654 6666655
No 16
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.85 E-value=7.9e-19 Score=139.27 Aligned_cols=184 Identities=15% Similarity=0.073 Sum_probs=136.0
Q ss_pred eeEEEeeecCCCCCCCCCceEeeeeccCCCceEEEEEEeCCCCChHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 025334 5 VTHGYHLVKGKAGHPMEDYVVAQFKQVDENELGLFAIFDGHLSHEIPDFLRTHLFENILNEPNFWQDPESAVRRAYCITD 84 (254)
Q Consensus 5 ~~~~~~s~~G~~~~~neD~~~~~~~~~~~~~~~l~~V~DG~Gg~~~a~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~ 84 (254)
+.++.....+.. ...|.+.+.. .+++..+++|+||+|++..|..++..+...+.+....... +...+..+|
T Consensus 4 ~~~~~~~~p~~~--~~GD~~~~~~---~~~~~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~~~----~~~~l~~~n 74 (193)
T smart00331 4 GLIAQYYEDATQ--VGGDFYDVVK---LPEGRLLIAIADVMGKGLAAALAMSMARSALRTLLSEGIS----LSQILERLN 74 (193)
T ss_pred eEEEEEEcchHh--cCccEEEEEE---eCCCeEEEEEEecCCCChHHHHHHHHHHHHHHHHhhcCCC----HHHHHHHHH
Confidence 455555555553 4899986532 2445799999999999999999999988888765433223 555666677
Q ss_pred HHHHhhhcccCCCCccEEEEEEE--eCCEEEEEEcCCCcEEEEe-CCeeeeCCCCCCCCchHHHHHhcCCeEecCCCCCC
Q 025334 85 TTILEKAVDLGKGGSTAVTAILI--NCEKLVVANVGDSRAVICK-NGVAKQLSVDHEPSSEREHIEGRGGFVSNFPGDVP 161 (254)
Q Consensus 85 ~~l~~~~~~~~~~~~tt~~~~~~--~~~~~~~~~vGDsr~~~~~-~~~~~~lt~dh~~~~e~~r~~~~g~~~~~~~~~~~ 161 (254)
+.+.... ....++|++++++ .+++++++|+||+|+|+++ ++...+.+.+.
T Consensus 75 ~~l~~~~---~~~~~~T~~~~~id~~~~~l~~~~~Gd~~~~~~~~~~~~~~~~~~~------------------------ 127 (193)
T smart00331 75 RAIYENG---EDGMFATLFLALYDFAGGTLSYANAGHSPPYLLRADGGLVEDLDDL------------------------ 127 (193)
T ss_pred HHHHhcC---CCCcEEEEEEEEEECCCCEEEEEeCCCCceEEEECCCCeEEEcCCC------------------------
Confidence 7776552 2456788888877 5789999999999999999 55544444332
Q ss_pred ccCCccccccccCCccccCCcCCCCeEEEEEcCCCCeEEEEEcCCCcccCCHHHHHHHHHcc--cCHHHHHHHHHHHHH
Q 025334 162 RVDGQLAVARAFGDKSLKMHLSSEPHVVMETIDDDTEFIILASDGLWKVMSNQDAADAIKNI--KDARSAARHLTEEAL 238 (254)
Q Consensus 162 ~~~~~~~~tr~~G~~~~~~~~~~~p~~~~~~l~~~~~~liL~SDG~~~~l~~~~i~~~~~~~--~~~~~~a~~l~~~a~ 238 (254)
++.+|... ..+++...+++.+ +|.|+|+|||+|+.+.++++.+++.+. .++.++++.+.+.+.
T Consensus 128 --------~~~lG~~~-----~~~~~~~~~~l~~-gd~l~l~TDGl~e~~~~~~l~~~l~~~~~~~~~~~~~~i~~~~~ 192 (193)
T smart00331 128 --------GAPLGLEP-----DVEVDVRELTLEP-GDLLLLYTDGLTEARNPERLEELLEELLGSPPAEIAQRILEELL 192 (193)
T ss_pred --------CceeeeCC-----CCcceeEEEeeCC-CCEEEEECCCccccCChHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 23455433 3457788888888 999999999999999999999999875 368898998887764
No 17
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=99.77 E-value=5.8e-17 Score=151.59 Aligned_cols=200 Identities=16% Similarity=0.120 Sum_probs=141.5
Q ss_pred eeEEEeeecCCCCCCCCCceEeeeeccCCCceEEEEEEeCCCCChHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 025334 5 VTHGYHLVKGKAGHPMEDYVVAQFKQVDENELGLFAIFDGHLSHEIPDFLRTHLFENILNEPNFWQDPESAVRRAYCITD 84 (254)
Q Consensus 5 ~~~~~~s~~G~~~~~neD~~~~~~~~~~~~~~~l~~V~DG~Gg~~~a~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~ 84 (254)
+.+|.+...-.....+.|.+.+.. .+++..+++|+||+|++..|...+..+.+.+.+......+ ...++..+|
T Consensus 552 ~~~g~a~~~k~g~~vsGD~y~~~~---l~~g~~~~~laDGmGhG~~Aa~~S~~~~~ll~~~~~~g~~----~~~ai~~lN 624 (764)
T TIGR02865 552 VSTGVARAAKDGELVSGDSYSFGK---LSAGKYAVAISDGMGSGPEAAQESSACVRLLEKFLESGFD----REVAIKTVN 624 (764)
T ss_pred ehhhHHHhcCCCCcccCceEEEEE---ECCCEEEEEEEcccCCCHHHHHHHHHHHHHHHHHHHcCCC----HHHHHHHHH
Confidence 334444433333347999986531 2455689999999998888877777666655432111112 356777778
Q ss_pred HHHHhhhcccCCCCccEEEEEEEe--CCEEEEEEcCCCcEEEEeCCeeeeCCCCCCCCchHHHHHhcCCeEecCCCCCCc
Q 025334 85 TTILEKAVDLGKGGSTAVTAILIN--CEKLVVANVGDSRAVICKNGVAKQLSVDHEPSSEREHIEGRGGFVSNFPGDVPR 162 (254)
Q Consensus 85 ~~l~~~~~~~~~~~~tt~~~~~~~--~~~~~~~~vGDsr~~~~~~~~~~~lt~dh~~~~e~~r~~~~g~~~~~~~~~~~~ 162 (254)
..+..... ....+|+..++++ .+++.++++|+++.|+.|++.+.+++..+.|
T Consensus 625 ~~L~~~~~---~~~faTl~l~~IDl~~g~~~~~~aG~~p~~i~r~~~v~~i~s~~lP----------------------- 678 (764)
T TIGR02865 625 SILSLRST---DEKFSTLDLSVIDLYTGQAEFVKVGAVPSFIKRGAKVEVIRSSNLP----------------------- 678 (764)
T ss_pred HHHHhCCC---CCeEEEEEEEEEECCCCeEEEEecCCCceEEEECCEEEEecCCCce-----------------------
Confidence 77755422 2356787777775 6899999999999999999988877654421
Q ss_pred cCCccccccccCCccccCCcCCCCeEEEEEcCCCCeEEEEEcCCCcccCCHHH-----HHHHHHc--ccCHHHHHHHHHH
Q 025334 163 VDGQLAVARAFGDKSLKMHLSSEPHVVMETIDDDTEFIILASDGLWKVMSNQD-----AADAIKN--IKDARSAARHLTE 235 (254)
Q Consensus 163 ~~~~~~~tr~~G~~~~~~~~~~~p~~~~~~l~~~~~~liL~SDG~~~~l~~~~-----i~~~~~~--~~~~~~~a~~l~~ 235 (254)
+|-.. ..+++....++.+ ||.|+++|||+++..++.+ +.+++.+ ..+|+++++.|++
T Consensus 679 ----------lGil~-----~~~~~~~~~~L~~-GD~Lll~SDGv~E~~~~~~~~~~~l~~~l~~~~~~~p~ela~~Il~ 742 (764)
T TIGR02865 679 ----------IGILD-----EVDVELVRKKLKN-GDLIVMVSDGVLEGEKEVEGKVLWLVRKLKETNTNDPEEIAEYLLE 742 (764)
T ss_pred ----------eEecc-----CCccceEEEEeCC-CCEEEEECCCCCcCCcccccHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 22211 3567777888888 9999999999999876433 7777765 3589999999999
Q ss_pred HHHhCC---CCCCcEEEEEEe
Q 025334 236 EALARN---SSDDISCVVVKF 253 (254)
Q Consensus 236 ~a~~~~---~~Dn~Tvivv~~ 253 (254)
.+.... ..||+|++++++
T Consensus 743 ~a~~~~~~~~~DD~Tvlvirv 763 (764)
T TIGR02865 743 KAKELRSGKIKDDMTVIVAKV 763 (764)
T ss_pred HHHHhcCCCCCCCeEEEEEEe
Confidence 997642 489999999986
No 18
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=99.68 E-value=8.7e-15 Score=115.94 Aligned_cols=176 Identities=14% Similarity=0.123 Sum_probs=119.5
Q ss_pred CceEEEEEEeCCCCChHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHhhhcccCCCCccEEEEEEEe--CCE
Q 025334 34 NELGLFAIFDGHLSHEIPDFLRTHLFENILNEPNFWQDPESAVRRAYCITDTTILEKAVDLGKGGSTAVTAILIN--CEK 111 (254)
Q Consensus 34 ~~~~l~~V~DG~Gg~~~a~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~tt~~~~~~~--~~~ 111 (254)
++..++.|+|+.|.+-.|.+.+..+...+........+ +.+.+..+|+.+....... ...+|++++.++ +++
T Consensus 2 ~~~~~~~v~D~~GhG~~aa~~~~~~~~~~~~~~~~~~~----p~~~l~~ln~~l~~~~~~~--~~~~t~~~~~~d~~~~~ 75 (193)
T PF07228_consen 2 DGRYFIIVGDVSGHGVSAALLSAALASAIRELLDEGLD----PEELLEALNRRLYRDLKGD--NRYATACYAIIDPETGT 75 (193)
T ss_dssp TTEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHTTTS----HHHHHHHHHHHHHHHTTTT--STTEEEEEEEEETTTTE
T ss_pred CCEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHhhhc--cccceEEEEEecccceE
Confidence 45788999999998877777777766666543222222 5666777777775443322 244566656654 678
Q ss_pred EEEEEcCCCcEEEEeCC--eeeeCCCCCCCCchHHHHHhcCCeEecCCCCCCccCCccccccccCCccccCCcCCCCeEE
Q 025334 112 LVVANVGDSRAVICKNG--VAKQLSVDHEPSSEREHIEGRGGFVSNFPGDVPRVDGQLAVARAFGDKSLKMHLSSEPHVV 189 (254)
Q Consensus 112 ~~~~~vGDsr~~~~~~~--~~~~lt~dh~~~~e~~r~~~~g~~~~~~~~~~~~~~~~~~~tr~~G~~~~~~~~~~~p~~~ 189 (254)
++++|+|++++++++++ ....+..... .+|... ..++...
T Consensus 76 l~~~~aG~~~~l~~~~~~~~~~~~~~~~~---------------------------------~lG~~~-----~~~~~~~ 117 (193)
T PF07228_consen 76 LTYANAGHPPPLLLRPGGREIEQLESEGP---------------------------------PLGIFE-----DIDYQEQ 117 (193)
T ss_dssp EEEEEESSSEEEEEETTCTEEEEETCSSB---------------------------------BCSSSC-----TTCEEEE
T ss_pred EEEeCCCCCCEEEEeccccceeecccCcc---------------------------------ceeeec-----cccccce
Confidence 99999999999999983 3333322221 144433 3566667
Q ss_pred EEEcCCCCeEEEEEcCCCcccCCHH-------HHHHHHHc--ccCHHHHHHHHHHHHHh---CCCCCCcEEEEEEeC
Q 025334 190 METIDDDTEFIILASDGLWKVMSNQ-------DAADAIKN--IKDARSAARHLTEEALA---RNSSDDISCVVVKFN 254 (254)
Q Consensus 190 ~~~l~~~~~~liL~SDG~~~~l~~~-------~i~~~~~~--~~~~~~~a~~l~~~a~~---~~~~Dn~Tvivv~~~ 254 (254)
.+++.+ |+.|+|+|||+++....+ .+.+.+.+ ..++++.++.|.+.+.. ....||+|+++++++
T Consensus 118 ~~~l~~-gd~l~l~TDGl~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~DD~tvl~~~~~ 193 (193)
T PF07228_consen 118 EIQLEP-GDRLLLYTDGLFEALNEDGEFFGEERLLELLDENRGLSPQEIIDALLEAIDRFGKGPLRDDITVLVIRRQ 193 (193)
T ss_dssp EEE--T-TEEEEEECHHHCTTTCHHCHHCCCHHHHHHHHCHTTS-HHHHHHHHHHHHHHHTTSSTSS-EEEEEEEE-
T ss_pred EEEecc-ccEEEEeCCChhhccCCccchhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEEEC
Confidence 788888 999999999999998533 34566664 35799999999998877 357899999999975
No 19
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=98.92 E-value=4.2e-07 Score=79.25 Aligned_cols=189 Identities=13% Similarity=0.026 Sum_probs=121.4
Q ss_pred CCCceEeeeeccCCCceEEEEEEeCCCCChHHHHHHHHHHHHHHcCCCC-CCCHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 025334 20 MEDYVVAQFKQVDENELGLFAIFDGHLSHEIPDFLRTHLFENILNEPNF-WQDPESAVRRAYCITDTTILEKAVDLGKGG 98 (254)
Q Consensus 20 neD~~~~~~~~~~~~~~~l~~V~DG~Gg~~~a~~~~~~~~~~l~~~~~~-~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~ 98 (254)
--|++-+.. .+.....++|+|..|-+-.|.+.+......+...... ..++. ..++.+|+.+....... .
T Consensus 162 GGD~yd~~~---~~~~~~~i~I~DvsG~Gv~aal~m~~~~~~~~~~~~~~~~~p~----~~l~~~n~~~~~~~~~~---~ 231 (367)
T COG2208 162 GGDYYDFIQ---LGEKRLRIGIGDVSGKGVPAALLMLMPKLALRLLLESGPLDPA----DVLETLNRVLKQNLEED---M 231 (367)
T ss_pred CCceEEEEE---ECCcEEEEEEEeccCCCHHHHHHHHHHHHHHHHhhhcccCCHH----HHHHHHHHHHHhcccCC---c
Confidence 356654322 1336889999999995554544433333333332222 22333 34455566555544332 5
Q ss_pred ccEEEEEEEe--CCEEEEEEcCCCcEEEEeCCeeeeCCCCCCCCchHHHHHhcCCeEecCCCCCCccCCccccccccCCc
Q 025334 99 STAVTAILIN--CEKLVVANVGDSRAVICKNGVAKQLSVDHEPSSEREHIEGRGGFVSNFPGDVPRVDGQLAVARAFGDK 176 (254)
Q Consensus 99 ~tt~~~~~~~--~~~~~~~~vGDsr~~~~~~~~~~~lt~dh~~~~e~~r~~~~g~~~~~~~~~~~~~~~~~~~tr~~G~~ 176 (254)
-+|+...+++ .+.+.++++|.--.++++.+.......- ......+|..
T Consensus 232 f~T~~~~~~d~~~~~l~y~~aGH~p~~i~~~~~~~~~~~l------------------------------~~~g~piG~~ 281 (367)
T COG2208 232 FVTLFLGVYDLDSGELTYSNAGHEPALILSADGEIEVEDL------------------------------TALGLPIGLL 281 (367)
T ss_pred EEEEEEEEEeccCCEEEEeeCCCCCeeEEEcCCCceeEEc------------------------------cCCCceeeec
Confidence 5666666665 6899999999999988887542100000 1334455654
Q ss_pred cccCCcCCCCeEEEEEcCCCCeEEEEEcCCCcc-------cCCHHHHHHHHHc--ccCHHHHHHHHHHHHHhC----CCC
Q 025334 177 SLKMHLSSEPHVVMETIDDDTEFIILASDGLWK-------VMSNQDAADAIKN--IKDARSAARHLTEEALAR----NSS 243 (254)
Q Consensus 177 ~~~~~~~~~p~~~~~~l~~~~~~liL~SDG~~~-------~l~~~~i~~~~~~--~~~~~~~a~~l~~~a~~~----~~~ 243 (254)
+ ...+.+...++.+ ||.+++.|||+.+ .+..+...+++.+ ..+|+++++.+.+...+. ...
T Consensus 282 ~-----~~~~~~~~~~l~~-gd~lvl~tDGv~Ea~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~~l~~~~~~~~~~ 355 (367)
T COG2208 282 P-----DYQYEVASLQLEP-GDLLVLYTDGVTEARNSDGEFFGLERLLKILGRLLGQPAEEILEAILESLEELQGDQIQD 355 (367)
T ss_pred C-----CccchheeEEecC-CCEEEEEcCCeeeeecCCccEecHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhCCcccc
Confidence 4 5667777888888 9999999999999 4567777777773 358889888888877652 346
Q ss_pred CCcEEEEEEeC
Q 025334 244 DDISCVVVKFN 254 (254)
Q Consensus 244 Dn~Tvivv~~~ 254 (254)
||+|++++++.
T Consensus 356 DDiTll~lk~~ 366 (367)
T COG2208 356 DDITLLVLKVK 366 (367)
T ss_pred CceEEEEEEec
Confidence 88999999874
No 20
>PRK10693 response regulator of RpoS; Provisional
Probab=89.78 E-value=4.7 Score=34.15 Aligned_cols=104 Identities=9% Similarity=0.010 Sum_probs=58.6
Q ss_pred CCCceEeeeeccCCCceEEEEEEe--CCCCCh-HHHHHHHHHHHHHHcCCC-CCCCHHHHHHHHHHHHHHHHHhhhcccC
Q 025334 20 MEDYVVAQFKQVDENELGLFAIFD--GHLSHE-IPDFLRTHLFENILNEPN-FWQDPESAVRRAYCITDTTILEKAVDLG 95 (254)
Q Consensus 20 neD~~~~~~~~~~~~~~~l~~V~D--G~Gg~~-~a~~~~~~~~~~l~~~~~-~~~~~~~~l~~~~~~~~~~l~~~~~~~~ 95 (254)
..|.+-+. .-+++...|-++| |||++. .|......++..+++... ..........+.+..+|+.+.......
T Consensus 150 ~GD~~d~~---~l~~~~~~~~~~DvsGhg~hg~~aa~l~~~~~~~~~~~~~~~~~~~~~~p~~~l~~lN~~l~~~~~~~- 225 (303)
T PRK10693 150 PGLVLDIA---ALSDNDLAFYCLDVTRAGDNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLKQVNHLLRQANLPG- 225 (303)
T ss_pred CccEEeee---ecCCCcEEEEEEecCCCCcccHHHHHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHhcCCCc-
Confidence 45655422 1245567777888 887664 455555555555544311 000000124666777788877653222
Q ss_pred CCCccEEEEEEEe--CCEEEEEEcCCCcEEEEeCCee
Q 025334 96 KGGSTAVTAILIN--CEKLVVANVGDSRAVICKNGVA 130 (254)
Q Consensus 96 ~~~~tt~~~~~~~--~~~~~~~~vGDsr~~~~~~~~~ 130 (254)
. -|+..++++ .+++.+++.|....++..++.+
T Consensus 226 --~-~t~~~~~~d~~~~~l~~~~AGhp~~~~~~~~~~ 259 (303)
T PRK10693 226 --Q-FPLLVGYYHRELKNLILVSAGLNATLNTGEHQV 259 (303)
T ss_pred --e-eeEEEEEEEcCCCeEEEEeCCCCCEEecCCeEE
Confidence 2 355555554 5689999999999885444433
No 21
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain.
Probab=61.01 E-value=5.7 Score=25.86 Aligned_cols=25 Identities=12% Similarity=0.230 Sum_probs=18.2
Q ss_pred cCCCCeEEEEEcCCCcccCCHHHHH
Q 025334 193 IDDDTEFIILASDGLWKVMSNQDAA 217 (254)
Q Consensus 193 l~~~~~~liL~SDG~~~~l~~~~i~ 217 (254)
+...|..+++++||+|=-+....+.
T Consensus 23 l~~~G~Rllva~nGv~lEv~r~WL~ 47 (72)
T PF09436_consen 23 LERPGHRLLVASNGVFLEVRRPWLH 47 (72)
T ss_pred cccCCcEEEEecCcEEEEEechHHH
Confidence 3434999999999999666555443
No 22
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=51.10 E-value=32 Score=26.83 Aligned_cols=45 Identities=22% Similarity=0.454 Sum_probs=33.2
Q ss_pred CeEEEEEcCCCcc-----------cCCHHHHHHHHHc----ccCHHHHHHHHHHHHHhCC
Q 025334 197 TEFIILASDGLWK-----------VMSNQDAADAIKN----IKDARSAARHLTEEALARN 241 (254)
Q Consensus 197 ~~~liL~SDG~~~-----------~l~~~~i~~~~~~----~~~~~~~a~~l~~~a~~~~ 241 (254)
+|.++..|.|||. +|..+...+.+.+ .+-|.+.|+.|+++-..+|
T Consensus 71 DDTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~RG 130 (237)
T COG3700 71 DDTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRG 130 (237)
T ss_pred CCeeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHhcC
Confidence 6789999999985 3444555555544 2468999999999888876
No 23
>COG2168 DsrH Uncharacterized conserved protein involved in oxidation of intracellular sulfur [Inorganic ion transport and metabolism]
Probab=50.30 E-value=13 Score=25.62 Aligned_cols=27 Identities=11% Similarity=0.437 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCcccCCHHHHHHHHHc
Q 025334 196 DTEFIILASDGLWKVMSNQDAADAIKN 222 (254)
Q Consensus 196 ~~~~liL~SDG~~~~l~~~~i~~~~~~ 222 (254)
++|-++|+.||++-.+...+..+-+..
T Consensus 24 ~~D~vlL~qdGV~aAl~~~~~~~sl~~ 50 (96)
T COG2168 24 EGDAVLLLQDGVYAALKGNRYLASLRE 50 (96)
T ss_pred ccCeEEEEcccchhhhcCcHHHHHHhc
Confidence 389999999999999988777666655
No 24
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=36.29 E-value=48 Score=20.65 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=21.4
Q ss_pred cCCHHHHHHHHHcc-cCHHHHHHHHHH
Q 025334 210 VMSNQDAADAIKNI-KDARSAARHLTE 235 (254)
Q Consensus 210 ~l~~~~i~~~~~~~-~~~~~~a~~l~~ 235 (254)
..++++|-.++.+. -+|.+++++|+.
T Consensus 18 ~hse~eIya~L~ecnMDpnea~qrLL~ 44 (60)
T PF06972_consen 18 CHSEEEIYAMLKECNMDPNEAVQRLLS 44 (60)
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 36788998888775 499999999986
No 25
>PF04077 DsrH: DsrH like protein; InterPro: IPR007215 The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulphur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulphide moiety, delivered by the cysteine desulphurase IscS to TusA, then to TusBCD. The activated sulphur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulphur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulphur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulphur flux, such as oxidation from sulphide to molecular sulphur to sulphate [].; GO: 0002143 tRNA wobble position uridine thiolation, 0005737 cytoplasm; PDB: 2HYB_O 2HY5_C 1X9A_A 1RHX_A 2D1P_C.
Probab=28.60 E-value=14 Score=25.04 Aligned_cols=25 Identities=16% Similarity=0.379 Sum_probs=19.0
Q ss_pred CeEEEEEcCCCcccCCHHHHHHHHH
Q 025334 197 TEFIILASDGLWKVMSNQDAADAIK 221 (254)
Q Consensus 197 ~~~liL~SDG~~~~l~~~~i~~~~~ 221 (254)
+|-|+|.-||++..+........+.
T Consensus 19 ~D~ilLiqDgV~~a~~~~~~~~~l~ 43 (88)
T PF04077_consen 19 GDAILLIQDGVYAALKGSPYFKLLQ 43 (88)
T ss_dssp T-EEEE-GGGGGGGBTTSTTHHHHH
T ss_pred CCEEEeeHHHHHHHhcCCHHHHHHh
Confidence 8999999999999988776666554
No 26
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=26.03 E-value=1e+02 Score=15.55 Aligned_cols=20 Identities=20% Similarity=0.311 Sum_probs=16.0
Q ss_pred EEeCCEEEEEEcCCCcEEEE
Q 025334 106 LINCEKLVVANVGDSRAVIC 125 (254)
Q Consensus 106 ~~~~~~~~~~~vGDsr~~~~ 125 (254)
+..++.+|++-.|..|+..+
T Consensus 9 v~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 9 VDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EETTSEEEEEECCCTEEEEE
T ss_pred EeCCCCEEEEECCCCEEEEC
Confidence 33789999999999888654
No 27
>PRK05457 heat shock protein HtpX; Provisional
Probab=25.17 E-value=95 Score=26.13 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=28.1
Q ss_pred CCeEEEEEcCCCCeEEEEEcCCCcccCCHHHHHHHHHc
Q 025334 185 EPHVVMETIDDDTEFIILASDGLWKVMSNQDAADAIKN 222 (254)
Q Consensus 185 ~p~~~~~~l~~~~~~liL~SDG~~~~l~~~~i~~~~~~ 222 (254)
.|+........ .+.+|+.|+|+.+.++++|+..++..
T Consensus 104 ~~NAfa~G~~~-~~~~V~vt~gLl~~L~~~El~aVlAH 140 (284)
T PRK05457 104 EINAFATGASK-NNSLVAVSTGLLQNMSRDEVEAVLAH 140 (284)
T ss_pred CceEEEecCCC-CCeEEEeehHHhhhCCHHHHHHHHHH
Confidence 34444444444 56899999999999999999888855
No 28
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=24.52 E-value=75 Score=21.51 Aligned_cols=21 Identities=19% Similarity=0.501 Sum_probs=16.9
Q ss_pred CeEEEEEcCCCCeEEEEEcCC
Q 025334 186 PHVVMETIDDDTEFIILASDG 206 (254)
Q Consensus 186 p~~~~~~l~~~~~~liL~SDG 206 (254)
..+....+..+||.++|+||.
T Consensus 42 ~~~~L~YlDDEgD~VllT~D~ 62 (86)
T cd06409 42 HLYALSYVDDEGDIVLITSDS 62 (86)
T ss_pred CcccEEEEcCCCCEEEEeccc
Confidence 456667778889999999996
No 29
>PRK02391 heat shock protein HtpX; Provisional
Probab=24.14 E-value=77 Score=26.87 Aligned_cols=36 Identities=8% Similarity=0.261 Sum_probs=26.6
Q ss_pred CeEEEEEcCCCCeEEEEEcCCCcccCCHHHHHHHHHc
Q 025334 186 PHVVMETIDDDTEFIILASDGLWKVMSNQDAADAIKN 222 (254)
Q Consensus 186 p~~~~~~l~~~~~~liL~SDG~~~~l~~~~i~~~~~~ 222 (254)
|+-....... ...+|+.|||+.+.++++|+..++..
T Consensus 104 ~NAfa~G~~~-~~~~V~vt~gLl~~L~~~El~aVlaH 139 (296)
T PRK02391 104 PNAFATGRSP-KNAVVCVTTGLMRRLDPDELEAVLAH 139 (296)
T ss_pred CceEEecCCC-CCcEEEecHHHHhhCCHHHHHHHHHH
Confidence 4444433333 56788999999999999999888855
No 30
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=23.20 E-value=1.3e+02 Score=24.77 Aligned_cols=50 Identities=12% Similarity=0.040 Sum_probs=33.0
Q ss_pred EEEEe-CCCCChHHHHHHHHHHHHH----Hc--CCCCCCCHHHHHHHHHHHHHHHHH
Q 025334 39 FAIFD-GHLSHEIPDFLRTHLFENI----LN--EPNFWQDPESAVRRAYCITDTTIL 88 (254)
Q Consensus 39 ~~V~D-G~Gg~~~a~~~~~~~~~~l----~~--~~~~~~~~~~~l~~~~~~~~~~l~ 88 (254)
.|||| |+||--+.+.+.+.++..= .. ...+.+...+.+.+.+.+.-..+.
T Consensus 1 IgvfDSGiGGltv~~~l~~~~p~~~~iy~~D~~~~PYG~ks~~~i~~~~~~~~~~L~ 57 (251)
T TIGR00067 1 IGVFDSGVGGLSVLKEIRKQLPKEHYIYVGDTKRFPYGEKSPEFILEYVLELLTFLK 57 (251)
T ss_pred CEEEeCCccHHHHHHHHHHHCCCCCEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 37999 8999988888888775431 11 223445556667777666666666
No 31
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=21.62 E-value=1.4e+02 Score=25.01 Aligned_cols=54 Identities=17% Similarity=0.218 Sum_probs=33.7
Q ss_pred EEEEEe-CCCCChHHHHHHHHHHHHHH----cC--CCCCCCHHHHHHHHHHHHHHHHHhhh
Q 025334 38 LFAIFD-GHLSHEIPDFLRTHLFENIL----NE--PNFWQDPESAVRRAYCITDTTILEKA 91 (254)
Q Consensus 38 l~~V~D-G~Gg~~~a~~~~~~~~~~l~----~~--~~~~~~~~~~l~~~~~~~~~~l~~~~ 91 (254)
-.|||| |+||--+.+.+.+.++..=+ .. ..+.....+.+++...++-..+.+..
T Consensus 7 ~IgvFDSGVGGLsVlrei~~~LP~e~~iY~~D~a~~PYG~ks~e~I~~~~~~i~~~l~~~~ 67 (269)
T COG0796 7 PIGVFDSGVGGLSVLREIRRQLPDEDIIYVGDTARFPYGEKSEEEIRERTLEIVDFLLERG 67 (269)
T ss_pred eEEEEECCCCcHHHHHHHHHHCCCCcEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 478999 89998888777776665322 22 23444455666666666666666543
No 32
>PRK00865 glutamate racemase; Provisional
Probab=21.14 E-value=1.5e+02 Score=24.53 Aligned_cols=52 Identities=17% Similarity=0.151 Sum_probs=33.0
Q ss_pred EEEEEe-CCCCChHHHHHHHHHHHHH----Hc--CCCCCCCHHHHHHHHHHHHHHHHHh
Q 025334 38 LFAIFD-GHLSHEIPDFLRTHLFENI----LN--EPNFWQDPESAVRRAYCITDTTILE 89 (254)
Q Consensus 38 l~~V~D-G~Gg~~~a~~~~~~~~~~l----~~--~~~~~~~~~~~l~~~~~~~~~~l~~ 89 (254)
=.|||| |+||--+.+.+.+.++.+= .. ...+.....+.+.+.+.++-+.+.+
T Consensus 7 ~IgvfDSGiGGLtvl~~i~~~lp~~~~iY~~D~~~~PYG~ks~~~i~~~~~~~~~~L~~ 65 (261)
T PRK00865 7 PIGVFDSGVGGLTVLREIRRLLPDEHIIYVGDTARFPYGEKSEEEIRERTLEIVEFLLE 65 (261)
T ss_pred eEEEEECCccHHHHHHHHHHHCCCCCEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 379999 8999988888877775531 11 1234444556666666666555554
No 33
>PRK03982 heat shock protein HtpX; Provisional
Probab=20.95 E-value=1.2e+02 Score=25.44 Aligned_cols=36 Identities=11% Similarity=0.367 Sum_probs=26.2
Q ss_pred CeEEEEEcCCCCeEEEEEcCCCcccCCHHHHHHHHHc
Q 025334 186 PHVVMETIDDDTEFIILASDGLWKVMSNQDAADAIKN 222 (254)
Q Consensus 186 p~~~~~~l~~~~~~liL~SDG~~~~l~~~~i~~~~~~ 222 (254)
|+-......+ .+-.|..|||+.+.++++|+..++..
T Consensus 96 ~NAfa~G~~~-~~~~V~vt~gLl~~l~~~El~AVlAH 131 (288)
T PRK03982 96 PNAFATGRDP-KHAVVAVTEGILNLLNEDELEGVIAH 131 (288)
T ss_pred cceEEeccCC-CCeEEEeehHHHhhCCHHHHHHHHHH
Confidence 4444443333 45677889999999999999888855
No 34
>PRK06246 fumarate hydratase; Provisional
Probab=20.35 E-value=3.8e+02 Score=22.61 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=16.9
Q ss_pred CCCCccEEEEEEEeCCEEEEEEc
Q 025334 95 GKGGSTAVTAILINCEKLVVANV 117 (254)
Q Consensus 95 ~~~~~tt~~~~~~~~~~~~~~~v 117 (254)
..++.||+..+.++....|++.+
T Consensus 240 GlGG~tTal~V~Ie~~p~H~Asl 262 (280)
T PRK06246 240 GLGGKTTALDVKIETYPCHIASL 262 (280)
T ss_pred ccCCceEEEEEEEeecCCcccCC
Confidence 46789999999997666555543
Done!