Your job contains 1 sequence.
>025335
MEMNGSKREENEKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGC
GFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVT
EAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRR
KTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGKSLESAEPKRL
IFSGISSWSHYIVL
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 025335
(254 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2099986 - symbol:AT3G55580 species:3702 "Arabi... 620 1.5e-60 1
UNIPROTKB|O95199 - symbol:RCBTB2 "RCC1 and BTB domain-con... 131 6.8e-06 1
TAIR|locus:2163986 - symbol:UVR8 "UVB-RESISTANCE 8" speci... 118 9.7e-06 2
MGI|MGI:1917200 - symbol:Rcbtb2 "regulator of chromosome ... 129 1.2e-05 1
TAIR|locus:2076889 - symbol:AT3G02510 "AT3G02510" species... 120 1.3e-05 2
UNIPROTKB|E1B8U7 - symbol:RCCD1 "Uncharacterized protein"... 123 3.2e-05 1
UNIPROTKB|E2R5W9 - symbol:RCCD1 "Uncharacterized protein"... 118 8.6e-05 1
FB|FBgn0031107 - symbol:HERC2 "HECT and RLD domain contai... 123 9.0e-05 2
TAIR|locus:2146142 - symbol:AT5G16040 "AT5G16040" species... 112 9.4e-05 2
UNIPROTKB|E1BVG2 - symbol:RCBTB1 "Uncharacterized protein... 100 0.00010 2
TAIR|locus:2159295 - symbol:RUG3 "RCC1/UVR8/GEF-like 3" s... 97 0.00011 2
UNIPROTKB|F1RW66 - symbol:HERC3 "Uncharacterized protein"... 123 0.00013 1
TAIR|locus:2156233 - symbol:RUG2 "RCC1/UVR8/GEF-like 2" s... 116 0.00028 1
RGD|1307989 - symbol:Herc2 "HECT and RLD domain containin... 119 0.00028 2
UNIPROTKB|G3MX12 - symbol:HERC2 "Uncharacterized protein"... 121 0.00029 2
UNIPROTKB|E2RDC2 - symbol:HERC2 "Uncharacterized protein"... 121 0.00029 3
UNIPROTKB|F1M560 - symbol:Herc2 "Protein Herc2" species:1... 119 0.00029 2
UNIPROTKB|E1B782 - symbol:HERC2 "Uncharacterized protein"... 121 0.00030 2
UNIPROTKB|F1RMH6 - symbol:RCCD1 "Uncharacterized protein"... 114 0.00036 1
ZFIN|ZDB-GENE-070718-6 - symbol:herc2 "hect domain and RL... 121 0.00037 2
UNIPROTKB|A2VDP7 - symbol:HERC3 "HERC3 protein" species:9... 119 0.00038 1
UNIPROTKB|Q15034 - symbol:HERC3 "Probable E3 ubiquitin-pr... 119 0.00038 1
UNIPROTKB|F1N7C1 - symbol:HERC6 "Uncharacterized protein"... 104 0.00042 2
UNIPROTKB|D4ACN3 - symbol:Herc2 "Protein Herc2" species:1... 119 0.00050 2
UNIPROTKB|E1C514 - symbol:HERC3 "Uncharacterized protein"... 118 0.00050 1
UNIPROTKB|O95714 - symbol:HERC2 "E3 ubiquitin-protein lig... 119 0.00051 2
MGI|MGI:103234 - symbol:Herc2 "hect (homologous to the E6... 119 0.00051 2
RGD|1307803 - symbol:Herc3 "HECT and RLD domain containin... 117 0.00054 1
UNIPROTKB|E2RMB0 - symbol:HERC3 "Uncharacterized protein"... 116 0.00084 1
UNIPROTKB|F1NBC5 - symbol:HERC3 "Uncharacterized protein"... 119 0.00089 2
UNIPROTKB|G3V2I3 - symbol:RCCD1 "RCC1 domain-containing p... 110 0.00099 1
>TAIR|locus:2099986 [details] [associations]
symbol:AT3G55580 species:3702 "Arabidopsis thaliana"
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] INTERPRO:IPR000408 Pfam:PF00415
EMBL:CP002686 Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012 EMBL:AL132975
HSSP:P18754 IPI:IPI00521720 PIR:T47697 RefSeq:NP_191117.1
UniGene:At.35013 ProteinModelPortal:Q9M2S1 SMR:Q9M2S1 PRIDE:Q9M2S1
EnsemblPlants:AT3G55580.1 GeneID:824723 KEGG:ath:AT3G55580
TAIR:At3g55580 InParanoid:Q9M2S1 OMA:HPIPCIE PhylomeDB:Q9M2S1
ProtClustDB:CLSN2685056 Genevestigator:Q9M2S1 Uniprot:Q9M2S1
Length = 488
Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
Identities = 122/221 (55%), Positives = 151/221 (68%)
Query: 21 VVYMWGYLPGTSPEKSPILSPIPARLCGG--DSWKDVCGGGCGFALATSESGKLITWGSA 78
VVYMWGYLPG SP++SP++SP+ ++ SWKDV GGGCGFA+AT+ESGKLITWGS
Sbjct: 32 VVYMWGYLPGASPQRSPLMSPVEVKIPPAVESSWKDVSGGGCGFAMATAESGKLITWGST 91
Query: 79 DDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAK 138
DD GQSY+TSGKHGETPEPFPLP E V KA AGWAHCV+VTE +VYTWGWREC+P+ +
Sbjct: 92 DDLGQSYVTSGKHGETPEPFPLPPEVCVQKAEAGWAHCVAVTENQQVYTWGWRECIPTGR 151
Query: 139 V---------TRDFG-SAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREE 188
V R+ S S GK+S+ T + R G E K+R+ S +++
Sbjct: 152 VFGQVDGDSCERNISFSTEQVSSSSQGKKSSGGTSSQV--EGRGGGEPTKKRRISPSKQA 209
Query: 189 SENPASGDEF-FTLSPCLVTLNPGVKITKVAAGGRHTLILS 228
+EN + D + PCLV+L PGV+I VAAGGRHTL LS
Sbjct: 210 AENSSQSDNIDLSALPCLVSLAPGVRIVSVAAGGRHTLALS 250
>UNIPROTKB|O95199 [details] [associations]
symbol:RCBTB2 "RCC1 and BTB domain-containing protein 2"
species:9606 "Homo sapiens" [GO:0005087 "Ran guanyl-nucleotide
exchange factor activity" evidence=TAS] InterPro:IPR000210
InterPro:IPR013069 Pfam:PF00651 PROSITE:PS50097 SMART:SM00225
INTERPRO:IPR000408 Pfam:PF00415 EMBL:CH471075 Gene3D:3.30.710.10
InterPro:IPR011333 SUPFAM:SSF54695 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0005087 PRINTS:PR00633
PROSITE:PS00625 PROSITE:PS00626 PROSITE:PS50012 eggNOG:COG5184
HOVERGEN:HBG053261 KO:K11494 EMBL:AF060219 EMBL:AY341245
EMBL:AK315703 EMBL:AL157813 EMBL:BC029052 IPI:IPI00658195
IPI:IPI00941277 PIR:T50663 RefSeq:NP_001259.1 UniGene:Hs.652712
ProteinModelPortal:O95199 SMR:O95199 IntAct:O95199
MINT:MINT-1481780 STRING:O95199 PhosphoSite:O95199 PRIDE:O95199
DNASU:1102 Ensembl:ENST00000344532 GeneID:1102 KEGG:hsa:1102
UCSC:uc001vch.3 CTD:1102 GeneCards:GC13M049063 HGNC:HGNC:1914
HPA:HPA040242 MIM:603524 neXtProt:NX_O95199 PharmGKB:PA26450
InParanoid:O95199 OrthoDB:EOG4M91R6 PhylomeDB:O95199 ChiTaRS:RCBTB2
GenomeRNAi:1102 NextBio:4558 ArrayExpress:O95199 Bgee:O95199
CleanEx:HS_RCBTB2 Genevestigator:O95199 GermOnline:ENSG00000136161
Uniprot:O95199
Length = 551
Score = 131 (51.2 bits), Expect = 6.8e-06, P = 6.8e-06
Identities = 36/113 (31%), Positives = 51/113 (45%)
Query: 22 VYMWGYL-PGTSPEKSPILSPIPARLCGGDSWKDVCGGGCG--FALATSESGKLITWGSA 78
V+ WGY G S + PIP R+ G K V CG +A ++G++ WG
Sbjct: 173 VFAWGYNNSGQVGSGSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGY- 231
Query: 79 DDEGQSYLTSGKHGETPEPFPLPTEAS--VVKAAAGWAHCVSVTEAGEVYTWG 129
G L G G P P + V + A G+AH + +T+ G+VY WG
Sbjct: 232 --NGNGQLGLGNSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYAWG 282
Score = 92 (37.4 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 28/94 (29%), Positives = 42/94 (44%)
Query: 42 IPARLCGGDSWKDVCGGGCG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFP 99
+P + S K V CG +L + G++ WG ++ GQ + SG P P
Sbjct: 141 VPCHISTNLSNKQVIEVACGSYHSLVLTSDGEVFAWGY-NNSGQ--VGSGSTVNQPIPRR 197
Query: 100 LP---TEASVVKAAAGWAHCVSVTEAGEVYTWGW 130
+ VV A G C++V + GEVY WG+
Sbjct: 198 VTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGY 231
Score = 64 (27.6 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 202 SPCLVTLNPGVKITKVAAGGRHTLILS 228
+PC V G+++ +VA G HTL+L+
Sbjct: 247 TPCRVAALQGIRVQRVACGYAHTLVLT 273
>TAIR|locus:2163986 [details] [associations]
symbol:UVR8 "UVB-RESISTANCE 8" species:3702 "Arabidopsis
thaliana" [GO:0005737 "cytoplasm" evidence=ISM] [GO:0005085
"guanyl-nucleotide exchange factor activity" evidence=ISS]
[GO:0009411 "response to UV" evidence=IMP] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0010224 "response to UV-B"
evidence=IEP;IGI] [GO:0000785 "chromatin" evidence=IDA] [GO:0009649
"entrainment of circadian clock" evidence=IMP] [GO:0006007 "glucose
catabolic process" evidence=RCA] [GO:0042803 "protein
homodimerization activity" evidence=IDA] INTERPRO:IPR000408
Pfam:PF00415 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009649 GO:GO:0000785 EMBL:AB007646
GO:GO:0003682 Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
GO:GO:0005085 PRINTS:PR00633 PROSITE:PS00625 PROSITE:PS00626
PROSITE:PS50012 GO:GO:0010224 eggNOG:COG5184 UniGene:At.49214
EMBL:AF130441 EMBL:AY125497 EMBL:BT000600 IPI:IPI00521473
PIR:T50662 RefSeq:NP_201191.1 PDB:4D9S PDB:4DNU PDB:4DNV PDB:4DNW
PDBsum:4D9S PDBsum:4DNU PDBsum:4DNV PDBsum:4DNW
ProteinModelPortal:Q9FN03 SMR:Q9FN03 DIP:DIP-59667N STRING:Q9FN03
PRIDE:Q9FN03 EnsemblPlants:AT5G63860.1 GeneID:836506
KEGG:ath:AT5G63860 TAIR:At5g63860 HOGENOM:HOG000240817
InParanoid:Q9FN03 OMA:GTLWCWG PhylomeDB:Q9FN03
ProtClustDB:CLSN2686209 Genevestigator:Q9FN03 Uniprot:Q9FN03
Length = 440
Score = 118 (46.6 bits), Expect = 9.7e-06, Sum P(2) = 9.7e-06
Identities = 33/113 (29%), Positives = 50/113 (44%)
Query: 22 VYMWGYLP-GT--SPEKSPILSPIPARLCGGDSWKDV-CGGGCGFALATSESGKLITWGS 77
VY WG+ G S + +P+P + G K + CG LA + G++ +WG
Sbjct: 89 VYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDS--HCLAVTMEGEVQSWGR 146
Query: 78 ADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW 130
+ GQ L + P+ + AAG H +VTE G++Y WGW
Sbjct: 147 -NQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGW 198
Score = 49 (22.3 bits), Expect = 9.7e-06, Sum P(2) = 9.7e-06
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 195 GDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGKS 231
G+ SP V K+ +V+ G RHTL ++ ++
Sbjct: 311 GNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERN 347
Score = 38 (18.4 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 6/15 (40%), Positives = 12/15 (80%)
Query: 214 ITKVAAGGRHTLILS 228
I++++ G RHT+ L+
Sbjct: 278 ISQISGGWRHTMALT 292
>MGI|MGI:1917200 [details] [associations]
symbol:Rcbtb2 "regulator of chromosome condensation (RCC1)
and BTB (POZ) domain containing protein 2" species:10090 "Mus
musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000210 InterPro:IPR013069 Pfam:PF00651
PROSITE:PS50097 SMART:SM00225 MGI:MGI:1917200 INTERPRO:IPR000408
Pfam:PF00415 Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
PRINTS:PR00633 PROSITE:PS00625 PROSITE:PS00626 PROSITE:PS50012
eggNOG:COG5184 GeneTree:ENSGT00700000104208 HOGENOM:HOG000065752
HOVERGEN:HBG053261 KO:K11494 CTD:1102 OrthoDB:EOG4M91R6
ChiTaRS:RCBTB2 EMBL:AK031242 EMBL:AK031248 EMBL:AK160881
EMBL:BC003224 IPI:IPI00308981 IPI:IPI00661148 RefSeq:NP_001164165.1
RefSeq:NP_598844.3 UniGene:Mm.280068 ProteinModelPortal:Q99LJ7
SMR:Q99LJ7 STRING:Q99LJ7 PhosphoSite:Q99LJ7 PaxDb:Q99LJ7
PRIDE:Q99LJ7 Ensembl:ENSMUST00000022702 Ensembl:ENSMUST00000110952
Ensembl:ENSMUST00000164822 Ensembl:ENSMUST00000169479
Ensembl:ENSMUST00000169513 Ensembl:ENSMUST00000170677 GeneID:105670
KEGG:mmu:105670 UCSC:uc007upj.2 UCSC:uc007upm.2 InParanoid:Q99LJ7
OMA:QMCSMAV NextBio:357822 Bgee:Q99LJ7 Genevestigator:Q99LJ7
GermOnline:ENSMUSG00000022106 Uniprot:Q99LJ7
Length = 551
Score = 129 (50.5 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 35/113 (30%), Positives = 51/113 (45%)
Query: 22 VYMWGYL-PGTSPEKSPILSPIPARLCGGDSWKDVCGGGCG--FALATSESGKLITWGSA 78
V+ WGY G S PIP R+ G K V CG ++A ++G++ WG
Sbjct: 173 VFAWGYNNSGQVGSGSTANQPIPRRVTGCLQNKVVMNIACGQMCSMAVVDTGEVYVWGY- 231
Query: 79 DDEGQSYLTSGKHGETPEPFPLPTEAS--VVKAAAGWAHCVSVTEAGEVYTWG 129
G L G G P P + V + A G+AH + +T+ G++Y WG
Sbjct: 232 --NGNGQLGLGSSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQIYAWG 282
Score = 90 (36.7 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 25/77 (32%), Positives = 37/77 (48%)
Query: 57 GGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEAS---VVKAAAGW 113
G G LAT++ G++ TWG S L +G P + T S V++ A G
Sbjct: 106 GSGPHIVLATTD-GEVFTWGH---NAYSQLGNGTTNHGLVPCHISTNLSNKQVIEVACGS 161
Query: 114 AHCVSVTEAGEVYTWGW 130
H + +T GEV+ WG+
Sbjct: 162 YHSLVLTSDGEVFAWGY 178
Score = 64 (27.6 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 202 SPCLVTLNPGVKITKVAAGGRHTLILS 228
+PC V G+++ +VA G HTL+L+
Sbjct: 247 TPCRVAALQGIRVQRVACGYAHTLVLT 273
>TAIR|locus:2076889 [details] [associations]
symbol:AT3G02510 "AT3G02510" species:3702 "Arabidopsis
thaliana" [GO:0003682 "chromatin binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0005886 "plasma membrane"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0008536 "Ran GTPase binding" evidence=ISS] INTERPRO:IPR000408
Pfam:PF00415 EMBL:CP002686 GenomeReviews:BA000014_GR
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012 UniGene:At.20016
UniGene:At.41128 EMBL:AK227929 IPI:IPI00539921 RefSeq:NP_186900.3
UniGene:At.70614 ProteinModelPortal:Q0WSJ9 SMR:Q0WSJ9 PRIDE:Q0WSJ9
EnsemblPlants:AT3G02510.1 GeneID:821100 KEGG:ath:AT3G02510
TAIR:At3g02510 OMA:NGGVQCW PhylomeDB:Q0WSJ9 Genevestigator:Q2V3Z2
Uniprot:Q0WSJ9
Length = 393
Score = 120 (47.3 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 36/112 (32%), Positives = 58/112 (51%)
Query: 22 VYMWG--YLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSAD 79
V+ WG + PG + S +P R+ G ++ + + G LA E G+L+ WG+ +
Sbjct: 171 VWTWGQPWPPGDIKQIS-----VPVRVQGLENVRLIAVGAF-HNLALEEDGRLLAWGN-N 223
Query: 80 DEGQSYLTSGKHGETPEPFPLP--TEASVVKAAAGWAHCVSVTEAGEVYTWG 129
+ GQ L +G T P P+ + ++V AAG H ++T+ GEVY WG
Sbjct: 224 EYGQ--LGTGDTQPTSHPVPVQGLDDLTLVDIAAGGWHSTALTDKGEVYGWG 273
Score = 44 (20.5 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 217 VAAGGRHTL-ILSGKS 231
+A GGRHTL I+ KS
Sbjct: 375 IACGGRHTLAIVEWKS 390
Score = 37 (18.1 bits), Expect = 6.5e-05, Sum P(2) = 6.5e-05
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 196 DEFFTLSPCLVTLNPGVKITKVAAGGRHTLILS 228
D+ + P V L I +V+ GG H++ L+
Sbjct: 286 DKSSKMVPQKVNLLAEEDIIQVSCGGTHSVALT 318
>UNIPROTKB|E1B8U7 [details] [associations]
symbol:RCCD1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] INTERPRO:IPR000408 Pfam:PF00415
GO:GO:0005886 GO:GO:0005737 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012
OMA:ERPGAWF GeneTree:ENSGT00700000104312 EMBL:DAAA02052163
IPI:IPI00710464 UniGene:Bt.111664 Ensembl:ENSBTAT00000024803
NextBio:20875558 Uniprot:E1B8U7
Length = 377
Score = 123 (48.4 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 38/120 (31%), Positives = 53/120 (44%)
Query: 59 GCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKA---AAGWAH 115
G AL +G++ +WG A GQ L G PEP L + A A GW H
Sbjct: 167 GAEHALLLDAAGQVFSWG-AGRHGQ--LGHGTLEAEPEPRLLEALQGLRMAEVAAGGW-H 222
Query: 116 CVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEE 175
V ++E G++Y WGW E A T+ G K + G+ S L + + AGE+
Sbjct: 223 SVCLSETGDIYIWGWNESGQLALPTKSLAEDG---KTTAGEASGLEEDGSEVKRGSAGED 279
>UNIPROTKB|E2R5W9 [details] [associations]
symbol:RCCD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] INTERPRO:IPR000408
Pfam:PF00415 GO:GO:0005886 GO:GO:0005737 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 PRINTS:PR00633 PROSITE:PS00626
PROSITE:PS50012 OMA:ERPGAWF GeneTree:ENSGT00700000104312
EMBL:AAEX03002330 EMBL:AAEX03002329 Ensembl:ENSCAFT00000035362
Uniprot:E2R5W9
Length = 313
Score = 118 (46.6 bits), Expect = 8.6e-05, P = 8.6e-05
Identities = 32/90 (35%), Positives = 42/90 (46%)
Query: 59 GCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEAS--VVKAAAGWAHC 116
G AL E+G++ +WG GQ L G PEP L V + AAG H
Sbjct: 103 GAEHALLLDEAGQVFSWGQGR-HGQ--LGHGSLEAEPEPRLLEALQGLPVAEVAAGGWHS 159
Query: 117 VSVTEAGEVYTWGWRE----CVPSAKVTRD 142
V V+E G++Y WGW E +PS + D
Sbjct: 160 VCVSETGDIYIWGWNESGQLALPSRSLAED 189
>FB|FBgn0031107 [details] [associations]
symbol:HERC2 "HECT and RLD domain containing protein 2
ortholog (H. sapiens)" species:7227 "Drosophila melanogaster"
[GO:0005085 "guanyl-nucleotide exchange factor activity"
evidence=NAS] [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IBA;NAS] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0020037 "heme binding" evidence=IEA] [GO:0042787 "protein
ubiquitination involved in ubiquitin-dependent protein catabolic
process" evidence=IBA] [GO:0005737 "cytoplasm" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] Pfam:PF00632 InterPro:IPR000569
InterPro:IPR001199 InterPro:IPR009060 InterPro:IPR010606
Pfam:PF00173 Pfam:PF06701 PROSITE:PS50237 PROSITE:PS51416
SMART:SM00119 UniPathway:UPA00143 INTERPRO:IPR000408 Pfam:PF00415
GO:GO:0005634 GO:GO:0005737 GO:GO:0005814 GO:GO:0046872
EMBL:AE014298 GO:GO:0020037 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 InterPro:IPR015940 PROSITE:PS50030
InterPro:IPR008979 SUPFAM:SSF49785 GO:GO:0004842 PRINTS:PR00633
PROSITE:PS00625 PROSITE:PS00626 PROSITE:PS50012 InterPro:IPR004939
PROSITE:PS51284 InterPro:IPR000859 SUPFAM:SSF49854 GO:GO:0042787
SUPFAM:SSF46934 Gene3D:2.30.30.30 InterPro:IPR021097
InterPro:IPR014722 Pfam:PF11515 SUPFAM:SSF56204 eggNOG:COG5021
GeneTree:ENSGT00700000104208 EMBL:AY113293 EMBL:AF189221
RefSeq:NP_608388.2 UniGene:Dm.3302 ProteinModelPortal:Q9VR91
SMR:Q9VR91 IntAct:Q9VR91 STRING:Q9VR91 PaxDb:Q9VR91
EnsemblMetazoa:FBtr0301344 GeneID:33035 KEGG:dme:Dmel_CG11734
UCSC:CG11734-RB CTD:8924 FlyBase:FBgn0031107 InParanoid:Q9VR91
KO:K10595 OMA:QLAFTRD OrthoDB:EOG48GTJ3 PhylomeDB:Q9VR91
GenomeRNAi:33035 NextBio:781623 Bgee:Q9VR91 GermOnline:CG11734
Uniprot:Q9VR91
Length = 4912
Score = 123 (48.4 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
Identities = 26/72 (36%), Positives = 39/72 (54%)
Query: 60 CG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCV 117
CG F+LA + +G++ TWG D + +H P+P V+ A G HC+
Sbjct: 3238 CGAQFSLALTRAGEVWTWGKGDYYRLGH-GGDQHVRKPQPIGGLRGRRVIHVAVGALHCL 3296
Query: 118 SVTEAGEVYTWG 129
+VT+AG+VY WG
Sbjct: 3297 AVTDAGQVYAWG 3308
Score = 119 (46.9 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 25/72 (34%), Positives = 38/72 (52%)
Query: 60 CG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCV 117
CG F++A ++SG + TWG D + S H P+ ++ A G HCV
Sbjct: 4301 CGSQFSVALTKSGAVYTWGKGDFHRLGH-GSVDHVRRPKKVAALQGKKIISIATGSLHCV 4359
Query: 118 SVTEAGEVYTWG 129
+ +++GEVYTWG
Sbjct: 4360 ACSDSGEVYTWG 4371
Score = 57 (25.1 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 194 SGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGKSLESAEPKR 239
SG+ F P LV V + +VA G H++ + S E KR
Sbjct: 3317 SGNTFVNKKPALVIGLDAVFVNRVACGSSHSIAWGLPNASSDEEKR 3362
Score = 55 (24.4 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 16/36 (44%), Positives = 16/36 (44%)
Query: 203 PCLVTLNPGVKITKVAAGGRHTLILSGKSL-ESAEP 237
P LV G I KV G HTL LS L E P
Sbjct: 4389 PRLVAALQGKHIVKVTCGSAHTLALSTSQLSERLRP 4424
Score = 42 (19.8 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 128 WGWRECVPSAKVTRDFGSAGS 148
WGWR V + G +GS
Sbjct: 3746 WGWRFWVHAIMPAATLGESGS 3766
>TAIR|locus:2146142 [details] [associations]
symbol:AT5G16040 "AT5G16040" species:3702 "Arabidopsis
thaliana" [GO:0003682 "chromatin binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008536 "Ran GTPase binding" evidence=ISS]
INTERPRO:IPR000408 Pfam:PF00415 EMBL:CP002688 EMBL:AL391145
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012 UniGene:At.19750
UniGene:At.49027 EMBL:BT028960 IPI:IPI00525887 PIR:T51387
RefSeq:NP_197108.1 HSSP:O87916 ProteinModelPortal:Q9LFS0 SMR:Q9LFS0
PRIDE:Q9LFS0 EnsemblPlants:AT5G16040.1 GeneID:831461
KEGG:ath:AT5G16040 TAIR:At5g16040 InParanoid:Q9LFS0 OMA:TTGHPME
PhylomeDB:Q9LFS0 ProtClustDB:CLSN2686124 Genevestigator:Q9LFS0
Uniprot:Q9LFS0
Length = 396
Score = 112 (44.5 bits), Expect = 9.4e-05, Sum P(2) = 9.4e-05
Identities = 35/124 (28%), Positives = 50/124 (40%)
Query: 58 GGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCV 117
GG +LA + GKL TWG + K TP +V+AA G HC+
Sbjct: 45 GGSRNSLAICDDGKLFTWGWNQRGTLGHPPETKTESTPSLVKSLANVKIVQAAIGGWHCL 104
Query: 118 SVTEAGEVYTWGWRECVPSAKVTRDFGSAGSF-QKDSTGKQSALPTEQAPPSDKRAGEEV 176
+V + G Y WG E +G G KD TG+ P + KR +++
Sbjct: 105 AVDDQGRAYAWGGNE----------YGQCGEEPSKDETGR----PVRRDIVIPKRCAQQL 150
Query: 177 VKRR 180
R+
Sbjct: 151 TVRQ 154
Score = 108 (43.1 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 36/114 (31%), Positives = 56/114 (49%)
Query: 22 VYMWG--YLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSAD 79
V+ WG + PG + S +P R+ G ++ + + G LA E G L WG+ +
Sbjct: 171 VWTWGQPWPPGDIKQIS-----VPVRVQGLENVRLIAVGAF-HNLALKEDGTLWAWGN-N 223
Query: 80 DEGQSYLTSGKHGETPEPFPLPTEA----SVVKAAAGWAHCVSVTEAGEVYTWG 129
+ GQ L +G P +P+P + ++V AAG H ++T GEVY WG
Sbjct: 224 EYGQ--LGTGD--TQPRSYPIPVQGLDDLTLVDIAAGGWHSTALTNEGEVYGWG 273
Score = 45 (20.9 bits), Expect = 9.4e-05, Sum P(2) = 9.4e-05
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 196 DEFFTLSPCLVTLNPGVKITKVAAGGRHTLILS 228
D+ + P V L G I +V+ GG H++ L+
Sbjct: 286 DKSSKMLPQKVNLLAGEDIIQVSCGGTHSVALT 318
Score = 44 (20.5 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 211 GVKITK-VAAGGRHTLIL 227
G I K VA GGRHTL +
Sbjct: 368 GKWIAKHVACGGRHTLAI 385
>UNIPROTKB|E1BVG2 [details] [associations]
symbol:RCBTB1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000210 InterPro:IPR013069 Pfam:PF00651 PROSITE:PS50097
SMART:SM00225 INTERPRO:IPR000408 Pfam:PF00415 GO:GO:0005737
Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012
GeneTree:ENSGT00700000104208 OMA:NCSNCLG EMBL:AADN02005390
IPI:IPI00590638 Ensembl:ENSGALT00000027473 Uniprot:E1BVG2
Length = 531
Score = 100 (40.3 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 30/107 (28%), Positives = 46/107 (42%)
Query: 30 GTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSG 89
GT +S I+ LCG G G L T E G++ WG G S L +G
Sbjct: 55 GTGDSQSTIVPKKLEALCGKKISSLSYGSGPHVLLCT-EDGEVYAWGH---NGYSQLGNG 110
Query: 90 KHGETPEPFPLPTEA---SVVKAAAGWAHCVSVTEAGEVYTWGWREC 133
+ P + T V++ A G H ++++ G++Y WG+ C
Sbjct: 111 ATNQGVTPVQVCTNLLLKKVIEVACGSHHSMALSFDGDLYAWGYNNC 157
Score = 92 (37.4 bits), Expect = 0.00084, Sum P(2) = 0.00084
Identities = 35/116 (30%), Positives = 50/116 (43%)
Query: 22 VYMWGYLPGTSPEKSPILSP--IPARLCGGDSWKDVCGGGCG--FALATSESGKLITWGS 77
VY WG+ G S + + P ++C K V CG ++A S G L WG
Sbjct: 96 VYAWGH-NGYSQLGNGATNQGVTPVQVCTNLLLKKVIEVACGSHHSMALSFDGDLYAWGY 154
Query: 78 ADDEGQSYLTSGKHGETPEPFPLPT---EASVVKAAAGWAHCVSVTEAGEVYTWGW 130
++ GQ + SG P P + + VV A G ++V GEVY WG+
Sbjct: 155 -NNCGQ--VGSGSTANQPTPRRVSNCLQDKMVVGIACGQTSSMAVVNNGEVYGWGY 207
Score = 62 (26.9 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 201 LSPCLVTLNPGVKITKVAAGGRHTLILSGKSL 232
L+PC V GV I ++A G HTL L+ + L
Sbjct: 222 LTPCRVAALHGVCILQIACGYAHTLALTDEGL 253
>TAIR|locus:2159295 [details] [associations]
symbol:RUG3 "RCC1/UVR8/GEF-like 3" species:3702
"Arabidopsis thaliana" [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0008536 "Ran GTPase binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0008380 "RNA splicing"
evidence=IMP] [GO:0032981 "mitochondrial respiratory chain complex
I assembly" evidence=IMP] INTERPRO:IPR000408 Pfam:PF00415
GO:GO:0005739 EMBL:CP002688 GO:GO:0008380 EMBL:AB015472
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0032981
PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012 UniGene:At.29139
UniGene:At.50545 HSSP:P18754 IPI:IPI00532631 RefSeq:NP_200895.2
ProteinModelPortal:Q9FJG9 SMR:Q9FJG9 PRIDE:Q9FJG9
EnsemblPlants:AT5G60870.1 GeneID:836208 KEGG:ath:AT5G60870
TAIR:At5g60870 HOGENOM:HOG000030010 InParanoid:Q9FJG9 OMA:ISCGLFH
PhylomeDB:Q9FJG9 ProtClustDB:CLSN2681113 Genevestigator:Q9FJG9
Uniprot:Q9FJG9
Length = 445
Score = 97 (39.2 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 33/100 (33%), Positives = 46/100 (46%)
Query: 34 EKSPILSPIPARLCGGDSWKDVCGGGCG-FALATSESGKLITWGSADDEGQSYLTSGKHG 92
++S L+ P R+ DS G CG F + G L WG D G+ L G+
Sbjct: 83 DQSFSLAQTPGRI-DADSSSFRIGISCGLFHSGLTIDGDLWIWGKGDG-GR--LGFGQEN 138
Query: 93 ET--PEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW 130
P PL E S+ A G H V++T G+V+TWG+
Sbjct: 139 SVFVPNLNPLFEEHSIRCIALGGLHSVALTHQGDVFTWGY 178
Score = 63 (27.2 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 195 GDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILS--GKSL 232
GD P V GV+IT++A GG H+L L+ GK L
Sbjct: 297 GDNLGGWEPMPVPSLEGVRITQIACGGYHSLALTEEGKVL 336
>UNIPROTKB|F1RW66 [details] [associations]
symbol:HERC3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] Pfam:PF00632
InterPro:IPR000569 PROSITE:PS50237 SMART:SM00119 INTERPRO:IPR000408
Pfam:PF00415 GO:GO:0005737 GO:GO:0016567 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0004842 PRINTS:PR00633
PROSITE:PS00626 PROSITE:PS50012 SUPFAM:SSF56204
GeneTree:ENSGT00660000095216 CTD:8916 KO:K10614 OMA:SPAVDFR
EMBL:FP015981 EMBL:CU915521 RefSeq:XP_003129374.3 UniGene:Ssc.42366
Ensembl:ENSSSCT00000010082 GeneID:100517903 KEGG:ssc:100517903
Uniprot:F1RW66
Length = 1050
Score = 123 (48.4 bits), Expect = 0.00013, P = 0.00013
Identities = 37/171 (21%), Positives = 70/171 (40%)
Query: 60 CG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCV 117
CG +LA S+ G+L +WG+ D +T+ + P + ++++ + G HC+
Sbjct: 91 CGESHSLALSDRGQLFSWGAGSDGQLGLMTTEESVAVPRLIQKLNQQTILQVSCGNWHCL 150
Query: 118 SVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVV 177
++ G+ +TWG + + ++F S S Q+ +P Q + +
Sbjct: 151 ALAADGQFFTWG-KNSHGQLGLGKEFPSQASPQR--VRSLEGIPLAQVAAGGAHSFALSL 207
Query: 178 KRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILS 228
+ DE SPC V L K+ ++ G HT +L+
Sbjct: 208 SGAVFGWGMNNAGQLGLSDEEDRESPCHVKLLRAQKVVYISCGEEHTAVLT 258
>TAIR|locus:2156233 [details] [associations]
symbol:RUG2 "RCC1/UVR8/GEF-like 2" species:3702
"Arabidopsis thaliana" [GO:0005794 "Golgi apparatus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] INTERPRO:IPR000408
Pfam:PF00415 EMBL:CP002688 GenomeReviews:BA000015_GR
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012 eggNOG:COG5184
HSSP:P18754 EMBL:BT005508 EMBL:AK117526 IPI:IPI00527447
RefSeq:NP_199644.2 UniGene:At.29855 ProteinModelPortal:Q8GYL6
SMR:Q8GYL6 PRIDE:Q8GYL6 EnsemblPlants:AT5G48330.1 GeneID:834886
KEGG:ath:AT5G48330 TAIR:At5g48330 HOGENOM:HOG000238877
InParanoid:Q8GYL6 OMA:SAGHYHS PhylomeDB:Q8GYL6
ProtClustDB:CLSN2680477 ArrayExpress:Q8GYL6 Genevestigator:Q8GYL6
Uniprot:Q8GYL6
Length = 455
Score = 116 (45.9 bits), Expect = 0.00028, P = 0.00028
Identities = 43/167 (25%), Positives = 73/167 (43%)
Query: 65 ATSESGKLITWGSADDEGQSYLTSGK-HGETPEPFPLPTEASVVKAAAGWAHCVSVTEAG 123
A + G L WG + GQ L +G P VVK + GW H +++T G
Sbjct: 152 AIGDDGSLWVWGRSK-RGQLGLGNGIIEARVPSRVENLAAEHVVKVSLGWGHALALTVDG 210
Query: 124 EVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGE---EVVKRR 180
+V+ WG+ V +V G+ G +++ S T+ + AG+ E +++
Sbjct: 211 KVFGWGY---VADGRV----GNVG-LPLEASLLDSI--TDGSMKGHHAAGDLNLEAAEKK 260
Query: 181 KTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLIL 227
+ +E++ P + + PCLV K+ +A G H+LIL
Sbjct: 261 VVEAMSKENDMPIAWE------PCLVEETCNEKVADIACGSDHSLIL 301
>RGD|1307989 [details] [associations]
symbol:Herc2 "HECT and RLD domain containing E3 ubiquitin
protein ligase 2" species:10116 "Rattus norvegicus" [GO:0004842
"ubiquitin-protein ligase activity" evidence=ISO;IBA] [GO:0005634
"nucleus" evidence=ISO;IBA] [GO:0005737 "cytoplasm"
evidence=ISO;IBA] [GO:0005743 "mitochondrial inner membrane"
evidence=ISO] [GO:0006281 "DNA repair" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=ISO] [GO:0007283
"spermatogenesis" evidence=ISO] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016567 "protein ubiquitination" evidence=ISO]
[GO:0020037 "heme binding" evidence=IEA] [GO:0031625 "ubiquitin
protein ligase binding" evidence=ISO] [GO:0032183 "SUMO binding"
evidence=ISO] [GO:0042787 "protein ubiquitination involved in
ubiquitin-dependent protein catabolic process" evidence=IBA]
Pfam:PF00632 InterPro:IPR000433 InterPro:IPR000569
InterPro:IPR001199 InterPro:IPR010606 Pfam:PF00173 Pfam:PF00569
Pfam:PF06701 PROSITE:PS01357 PROSITE:PS50135 PROSITE:PS50237
PROSITE:PS50255 PROSITE:PS51416 SMART:SM00119 SMART:SM00291
RGD:1307989 INTERPRO:IPR000408 Pfam:PF00415 GO:GO:0005634
GO:GO:0005737 GO:GO:0046872 GO:GO:0008270 GO:GO:0020037
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
Gene3D:3.10.120.10 SUPFAM:SSF55856 InterPro:IPR008979
SUPFAM:SSF49785 GO:GO:0004842 PRINTS:PR00633 PROSITE:PS00626
PROSITE:PS50012 InterPro:IPR004939 Pfam:PF03256 PROSITE:PS51284
GO:GO:0042787 Gene3D:2.30.30.30 InterPro:IPR021097
InterPro:IPR014722 Pfam:PF11515 SUPFAM:SSF56204 InterPro:IPR006624
SMART:SM00706 IPI:IPI00476523 Ensembl:ENSRNOT00000019318
UCSC:RGD:1307989 ArrayExpress:F1M716 Uniprot:F1M716
Length = 3607
Score = 119 (46.9 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 28/72 (38%), Positives = 35/72 (48%)
Query: 60 CG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCV 117
CG F++A ++SG + TWG D + S H P V+ A G HCV
Sbjct: 2978 CGSQFSVALTKSGAVYTWGKGDYHRLGH-GSDDHVRRPRQVQGLQGKKVIAIATGSLHCV 3036
Query: 118 SVTEAGEVYTWG 129
TE GEVYTWG
Sbjct: 3037 CCTEDGEVYTWG 3048
Score = 118 (46.6 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 28/77 (36%), Positives = 40/77 (51%)
Query: 55 VCGGGCG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAG 112
VC CG F+LA ++SG + TWG D + S H P+ +V A G
Sbjct: 2016 VCQIECGAQFSLALTKSGVVWTWGKGDYFRLGH-GSDVHVRKPQVVEGLRGKKIVHVAVG 2074
Query: 113 WAHCVSVTEAGEVYTWG 129
HC++VT++G+VY WG
Sbjct: 2075 ALHCLAVTDSGQVYAWG 2091
Score = 54 (24.1 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 203 PCLVTLNPGVKITKVAAGGRHTLILSGKSLESA 235
P LV G K+ +VA G HTL S SA
Sbjct: 3066 PRLVAALQGKKVNRVACGSAHTLAWSTSKPASA 3098
>UNIPROTKB|G3MX12 [details] [associations]
symbol:HERC2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0020037 "heme binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA] Pfam:PF00632 InterPro:IPR000433 InterPro:IPR000569
InterPro:IPR001199 InterPro:IPR010606 Pfam:PF00173 Pfam:PF00569
Pfam:PF06701 PROSITE:PS01357 PROSITE:PS50135 PROSITE:PS50237
PROSITE:PS50255 PROSITE:PS51416 SMART:SM00119 SMART:SM00291
INTERPRO:IPR000408 Pfam:PF00415 GO:GO:0046872 GO:GO:0008270
GO:GO:0020037 GO:GO:0005622 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 Gene3D:3.10.120.10 SUPFAM:SSF55856
InterPro:IPR008979 SUPFAM:SSF49785 GO:GO:0004842 PRINTS:PR00633
PROSITE:PS00626 PROSITE:PS50012 InterPro:IPR004939 Pfam:PF03256
PROSITE:PS51284 Gene3D:2.30.30.30 InterPro:IPR021097
InterPro:IPR014722 Pfam:PF11515 SUPFAM:SSF56204
GeneTree:ENSGT00700000104208 InterPro:IPR006624 SMART:SM00706
EMBL:DAAA02003804 EMBL:DAAA02003805 Ensembl:ENSBTAT00000063010
Uniprot:G3MX12
Length = 4757
Score = 121 (47.7 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 29/77 (37%), Positives = 40/77 (51%)
Query: 55 VCGGGCG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAG 112
VC CG F+LA ++SG + TWG D + S H P+ +V A G
Sbjct: 3128 VCQIECGAQFSLALTKSGVVWTWGKGDYFRLGH-GSDVHVRKPQVVEGLRGKKIVHVAVG 3186
Query: 113 WAHCVSVTEAGEVYTWG 129
HC++VT+AG+VY WG
Sbjct: 3187 ALHCLAVTDAGQVYAWG 3203
Score = 54 (24.1 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 203 PCLVTLNPGVKITKVAAGGRHTLILSGKSLESA 235
P LV G K+ +VA G HTL S SA
Sbjct: 4215 PRLVAALQGKKVNRVACGSAHTLAWSTSKPASA 4247
>UNIPROTKB|E2RDC2 [details] [associations]
symbol:HERC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0032183 "SUMO binding" evidence=IEA]
[GO:0031625 "ubiquitin protein ligase binding" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005743 "mitochondrial inner membrane"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0020037 "heme
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00632 InterPro:IPR000433 InterPro:IPR000569
InterPro:IPR001199 InterPro:IPR010606 Pfam:PF00173 Pfam:PF00569
Pfam:PF06701 PROSITE:PS01357 PROSITE:PS50135 PROSITE:PS50237
PROSITE:PS50255 PROSITE:PS51416 SMART:SM00119 SMART:SM00291
INTERPRO:IPR000408 Pfam:PF00415 GO:GO:0005634 GO:GO:0005743
GO:GO:0046872 GO:GO:0008270 GO:GO:0006281 GO:GO:0007283
GO:GO:0020037 Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
Gene3D:3.10.120.10 SUPFAM:SSF55856 InterPro:IPR008979
SUPFAM:SSF49785 GO:GO:0004842 PRINTS:PR00633 PROSITE:PS00626
PROSITE:PS50012 InterPro:IPR004939 Pfam:PF03256 PROSITE:PS51284
Gene3D:2.30.30.30 InterPro:IPR021097 InterPro:IPR014722
Pfam:PF11515 SUPFAM:SSF56204 GeneTree:ENSGT00700000104208 CTD:8924
KO:K10595 OMA:QLAFTRD InterPro:IPR006624 SMART:SM00706
EMBL:AAEX03002160 EMBL:AAEX03002161 EMBL:AAEX03002162
RefSeq:XP_536160.2 ProteinModelPortal:E2RDC2
Ensembl:ENSCAFT00000015697 GeneID:479005 KEGG:cfa:479005
Uniprot:E2RDC2
Length = 4837
Score = 121 (47.7 bits), Expect = 0.00029, Sum P(3) = 0.00029
Identities = 29/77 (37%), Positives = 40/77 (51%)
Query: 55 VCGGGCG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAG 112
VC CG F+LA ++SG + TWG D + S H P+ +V A G
Sbjct: 3208 VCQIECGAQFSLALTKSGVVWTWGKGDYFRLGH-GSDVHVRKPQVVEGLRGKKIVHVAVG 3266
Query: 113 WAHCVSVTEAGEVYTWG 129
HC++VT+AG+VY WG
Sbjct: 3267 ALHCLAVTDAGQVYAWG 3283
Score = 119 (46.9 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 28/72 (38%), Positives = 35/72 (48%)
Query: 60 CG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCV 117
CG F++A ++SG + TWG D + S H P V+ A G HCV
Sbjct: 4207 CGSQFSVALTKSGAVYTWGKGDYHRLGH-GSDDHVRRPRQVQGLQGKKVIAIATGSLHCV 4265
Query: 118 SVTEAGEVYTWG 129
TE GEVYTWG
Sbjct: 4266 CCTEDGEVYTWG 4277
Score = 54 (24.1 bits), Expect = 0.00029, Sum P(3) = 0.00029
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 203 PCLVTLNPGVKITKVAAGGRHTLILSGKSLESA 235
P LV G K+ +VA G HTL S SA
Sbjct: 4295 PRLVAALQGKKVNRVACGSAHTLAWSTSKPASA 4327
Score = 43 (20.2 bits), Expect = 0.00029, Sum P(3) = 0.00029
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 166 PPSDKRAGEEVVKRRKTSSARE-ESENPASGDE 197
P +D ++ T + + ES+N ASG E
Sbjct: 3501 PVTDDPGAASIIAETMTKTKEDVESQNKASGPE 3533
>UNIPROTKB|F1M560 [details] [associations]
symbol:Herc2 "Protein Herc2" species:10116 "Rattus
norvegicus" [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0020037 "heme binding"
evidence=IEA] Pfam:PF00632 InterPro:IPR000433 InterPro:IPR000569
InterPro:IPR001199 InterPro:IPR010606 Pfam:PF00173 Pfam:PF00569
Pfam:PF06701 PROSITE:PS01357 PROSITE:PS50135 PROSITE:PS50237
PROSITE:PS50255 PROSITE:PS51416 SMART:SM00119 SMART:SM00291
RGD:1307989 INTERPRO:IPR000408 Pfam:PF00415 GO:GO:0046872
GO:GO:0008270 GO:GO:0020037 GO:GO:0005622 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 Gene3D:3.10.120.10
SUPFAM:SSF55856 InterPro:IPR008979 SUPFAM:SSF49785 GO:GO:0004842
PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012 InterPro:IPR004939
Pfam:PF03256 PROSITE:PS51284 Gene3D:2.30.30.30 InterPro:IPR021097
InterPro:IPR014722 Pfam:PF11515 SUPFAM:SSF56204 InterPro:IPR006624
SMART:SM00706 IPI:IPI00779702 Ensembl:ENSRNOT00000055965
ArrayExpress:F1M560 Uniprot:F1M560
Length = 3643
Score = 119 (46.9 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 28/72 (38%), Positives = 35/72 (48%)
Query: 60 CG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCV 117
CG F++A ++SG + TWG D + S H P V+ A G HCV
Sbjct: 3014 CGSQFSVALTKSGAVYTWGKGDYHRLGH-GSDDHVRRPRQVQGLQGKKVIAIATGSLHCV 3072
Query: 118 SVTEAGEVYTWG 129
TE GEVYTWG
Sbjct: 3073 CCTEDGEVYTWG 3084
Score = 118 (46.6 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 28/77 (36%), Positives = 40/77 (51%)
Query: 55 VCGGGCG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAG 112
VC CG F+LA ++SG + TWG D + S H P+ +V A G
Sbjct: 2016 VCQIECGAQFSLALTKSGVVWTWGKGDYFRLGH-GSDVHVRKPQVVEGLRGKKIVHVAVG 2074
Query: 113 WAHCVSVTEAGEVYTWG 129
HC++VT++G+VY WG
Sbjct: 2075 ALHCLAVTDSGQVYAWG 2091
Score = 54 (24.1 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 203 PCLVTLNPGVKITKVAAGGRHTLILSGKSLESA 235
P LV G K+ +VA G HTL S SA
Sbjct: 3102 PRLVAALQGKKVNRVACGSAHTLAWSTSKPASA 3134
>UNIPROTKB|E1B782 [details] [associations]
symbol:HERC2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0032183 "SUMO binding" evidence=IEA] [GO:0031625
"ubiquitin protein ligase binding" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005743 "mitochondrial inner membrane"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0020037 "heme
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00632 InterPro:IPR000433 InterPro:IPR000569
InterPro:IPR001199 InterPro:IPR010606 Pfam:PF00173 Pfam:PF00569
Pfam:PF06701 PROSITE:PS01357 PROSITE:PS50135 PROSITE:PS50237
PROSITE:PS50255 PROSITE:PS51416 SMART:SM00119 SMART:SM00291
INTERPRO:IPR000408 Pfam:PF00415 GO:GO:0005634 GO:GO:0005743
GO:GO:0046872 GO:GO:0008270 GO:GO:0006281 GO:GO:0007283
GO:GO:0020037 Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
Gene3D:3.10.120.10 SUPFAM:SSF55856 InterPro:IPR008979
SUPFAM:SSF49785 GO:GO:0004842 PRINTS:PR00633 PROSITE:PS00626
PROSITE:PS50012 InterPro:IPR004939 Pfam:PF03256 PROSITE:PS51284
Gene3D:2.30.30.30 InterPro:IPR021097 InterPro:IPR014722
Pfam:PF11515 SUPFAM:SSF56204 GeneTree:ENSGT00700000104208
OMA:QLAFTRD InterPro:IPR006624 SMART:SM00706 EMBL:DAAA02003804
EMBL:DAAA02003805 IPI:IPI00713038 Ensembl:ENSBTAT00000018496
Uniprot:E1B782
Length = 4847
Score = 121 (47.7 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 29/77 (37%), Positives = 40/77 (51%)
Query: 55 VCGGGCG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAG 112
VC CG F+LA ++SG + TWG D + S H P+ +V A G
Sbjct: 3218 VCQIECGAQFSLALTKSGVVWTWGKGDYFRLGH-GSDVHVRKPQVVEGLRGKKIVHVAVG 3276
Query: 113 WAHCVSVTEAGEVYTWG 129
HC++VT+AG+VY WG
Sbjct: 3277 ALHCLAVTDAGQVYAWG 3293
Score = 54 (24.1 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 203 PCLVTLNPGVKITKVAAGGRHTLILSGKSLESA 235
P LV G K+ +VA G HTL S SA
Sbjct: 4305 PRLVAALQGKKVNRVACGSAHTLAWSTSKPASA 4337
>UNIPROTKB|F1RMH6 [details] [associations]
symbol:RCCD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] INTERPRO:IPR000408 Pfam:PF00415
GO:GO:0005886 GO:GO:0005737 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012
OMA:ERPGAWF GeneTree:ENSGT00700000104312 EMBL:CT868688
Ensembl:ENSSSCT00000002041 Uniprot:F1RMH6
Length = 382
Score = 114 (45.2 bits), Expect = 0.00036, P = 0.00036
Identities = 33/82 (40%), Positives = 43/82 (52%)
Query: 63 ALATSESGKLITWGSA---DDEGQSY--LTSGKHG-ETP----EPFP----LPTEASVVK 108
A + +E GK IT G A +++G T G+ G TP +PFP LP + VK
Sbjct: 252 ARSLAEDGKTIT-GDAPGLNEDGSEAKRATEGEDGGPTPFIAVQPFPALLDLPLGSDAVK 310
Query: 109 AAAGWAHCVSVTEAGEVYTWGW 130
A+ G H VT GE+YTWGW
Sbjct: 311 ASCGSRHTAVVTRTGELYTWGW 332
>ZFIN|ZDB-GENE-070718-6 [details] [associations]
symbol:herc2 "hect domain and RLD 2" species:7955
"Danio rerio" [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=IEA] [GO:0006464 "cellular protein modification
process" evidence=IEA] [GO:0020037 "heme binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] Pfam:PF00632
InterPro:IPR000433 InterPro:IPR000569 InterPro:IPR001199
InterPro:IPR009060 InterPro:IPR010606 Pfam:PF00173 Pfam:PF00569
Pfam:PF06701 PROSITE:PS01357 PROSITE:PS50135 PROSITE:PS50237
PROSITE:PS50255 PROSITE:PS51416 SMART:SM00119 SMART:SM00291
INTERPRO:IPR000408 Pfam:PF00415 ZFIN:ZDB-GENE-070718-6
GO:GO:0046872 GO:GO:0008270 GO:GO:0020037 GO:GO:0005622
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
Gene3D:3.10.120.10 SUPFAM:SSF55856 InterPro:IPR008979
SUPFAM:SSF49785 GO:GO:0004842 PRINTS:PR00633 PROSITE:PS00626
PROSITE:PS50012 InterPro:IPR004939 Pfam:PF03256 PROSITE:PS51284
SUPFAM:SSF46934 Gene3D:2.30.30.30 InterPro:IPR021097
InterPro:IPR014722 Pfam:PF11515 SUPFAM:SSF56204
GeneTree:ENSGT00700000104208 InterPro:IPR006624 SMART:SM00706
EMBL:CABZ01006344 EMBL:CABZ01006345 EMBL:CABZ01006346 EMBL:FP085470
IPI:IPI00495163 Ensembl:ENSDART00000110770 Uniprot:E7EYK8
Length = 4832
Score = 121 (47.7 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 55 VCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWA 114
VC G F++A ++ G++ TWG D++ + T +H P+ VV A G
Sbjct: 652 VCCGS-QFSVALTKDGQVYTWGKGDNQRLGHGTD-EHVRYPKLLDSLQGKRVVDIAVGST 709
Query: 115 HCVSVTEAGEVYTWG 129
HC+++TE GEV++WG
Sbjct: 710 HCLALTEEGEVHSWG 724
Score = 119 (46.9 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 28/72 (38%), Positives = 35/72 (48%)
Query: 60 CG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCV 117
CG F++A ++SG + TWG D + S H P V+ A G HCV
Sbjct: 4202 CGSQFSVALTKSGAVYTWGKGDYHRLGH-GSDDHVRRPRQVQGLQGKKVIAIATGSLHCV 4260
Query: 118 SVTEAGEVYTWG 129
TE GEVYTWG
Sbjct: 4261 CCTEDGEVYTWG 4272
Score = 53 (23.7 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 203 PCLVTLNPGVKITKVAAGGRHTLILS 228
P LV G KI +VA G HTL S
Sbjct: 4290 PRLVAALQGKKINRVACGSAHTLAWS 4315
>UNIPROTKB|A2VDP7 [details] [associations]
symbol:HERC3 "HERC3 protein" species:9913 "Bos taurus"
[GO:0042787 "protein ubiquitination involved in ubiquitin-dependent
protein catabolic process" evidence=IBA] [GO:0005737 "cytoplasm"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IBA] Pfam:PF00632
InterPro:IPR000569 PROSITE:PS50237 SMART:SM00119 INTERPRO:IPR000408
Pfam:PF00415 GO:GO:0005634 GO:GO:0005737 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0004842 PRINTS:PR00633
PROSITE:PS00626 PROSITE:PS50012 GO:GO:0042787 SUPFAM:SSF56204
eggNOG:COG5021 GeneTree:ENSGT00660000095216 CTD:8916
HOGENOM:HOG000208452 HOVERGEN:HBG050878 KO:K10614 OMA:SPAVDFR
OrthoDB:EOG4RBQHS EMBL:DAAA02017014 EMBL:BC133341 IPI:IPI00710875
RefSeq:NP_001077132.1 UniGene:Bt.85959 Ensembl:ENSBTAT00000013357
GeneID:510924 KEGG:bta:510924 InParanoid:A2VDP7 NextBio:20869685
Uniprot:A2VDP7
Length = 1050
Score = 119 (46.9 bits), Expect = 0.00038, P = 0.00038
Identities = 38/171 (22%), Positives = 68/171 (39%)
Query: 60 CG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCV 117
CG +LA S+ G+L +WG+ D +T P + ++++ + G HC+
Sbjct: 91 CGESHSLALSDQGQLFSWGAGSDGQLGLMTIEDSVAVPRLIQKLNQQTILQVSCGNWHCL 150
Query: 118 SVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVV 177
++ G+ +TWG R + ++F S S Q+ +P Q + +
Sbjct: 151 ALAADGQFFTWG-RNSHGQLGLGKEFPSQASPQR--VRSLEGIPLAQVVAGGAHSFALSL 207
Query: 178 KRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILS 228
+ DE SPC V L K+ ++ G HT +L+
Sbjct: 208 SGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLT 258
Score = 115 (45.5 bits), Expect = 0.00082, Sum P(2) = 0.00082
Identities = 36/111 (32%), Positives = 56/111 (50%)
Query: 25 WGYLPGTSPEKSPILSPIPA--RLCG--GD-SWKDV-CGGGCGFALATSESGKLITWGSA 78
WGY P SP L I A ++CG D S K+V CGG L E G++ T G
Sbjct: 4 WGYWSLGQPGISPNLQGIVAEPQVCGFISDRSVKEVACGGNHSVFLL--EDGEVYTCG-V 60
Query: 79 DDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWG 129
+ +GQ L + G PE + +V A G +H +++++ G++++WG
Sbjct: 61 NTKGQ--LGHEREGNKPEQIGALADQHIVHVACGESHSLALSDQGQLFSWG 109
Score = 43 (20.2 bits), Expect = 0.00082, Sum P(2) = 0.00082
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 211 GVKITKVAAGGRHTL 225
G ++T++A G +HTL
Sbjct: 293 GSEVTQIACGRQHTL 307
>UNIPROTKB|Q15034 [details] [associations]
symbol:HERC3 "Probable E3 ubiquitin-protein ligase HERC3"
species:9606 "Homo sapiens" [GO:0016023 "cytoplasmic
membrane-bounded vesicle" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IBA] [GO:0005634
"nucleus" evidence=IBA] [GO:0042787 "protein ubiquitination
involved in ubiquitin-dependent protein catabolic process"
evidence=IBA] [GO:0005737 "cytoplasm" evidence=IDA] Pfam:PF00632
InterPro:IPR000569 PROSITE:PS50237 SMART:SM00119
UniPathway:UPA00143 INTERPRO:IPR000408 Pfam:PF00415 GO:GO:0005634
GO:GO:0005737 GO:GO:0016023 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 EMBL:CH471057 GO:GO:0004842 PRINTS:PR00633
PROSITE:PS00625 PROSITE:PS00626 PROSITE:PS50012 GO:GO:0042787
SUPFAM:SSF56204 eggNOG:COG5021 EMBL:D25215 EMBL:AK289990
IPI:IPI00014216 RefSeq:NP_001258531.1 RefSeq:NP_055421.1
UniGene:Hs.35804 ProteinModelPortal:Q15034 SMR:Q15034 IntAct:Q15034
MINT:MINT-158126 STRING:Q15034 PhosphoSite:Q15034 DMDM:2495699
PaxDb:Q15034 PRIDE:Q15034 DNASU:8916 Ensembl:ENST00000264345
Ensembl:ENST00000402738 GeneID:8916 KEGG:hsa:8916 UCSC:uc003hrw.1
CTD:8916 GeneCards:GC04P089444 HGNC:HGNC:4876 HPA:HPA039170
MIM:605200 neXtProt:NX_Q15034 PharmGKB:PA29251 HOGENOM:HOG000208452
HOVERGEN:HBG050878 InParanoid:Q15034 KO:K10614 OMA:SPAVDFR
OrthoDB:EOG4RBQHS PhylomeDB:Q15034 ChiTaRS:HERC3 GenomeRNAi:8916
NextBio:33540 ArrayExpress:Q15034 Bgee:Q15034 CleanEx:HS_HERC3
Genevestigator:Q15034 Uniprot:Q15034
Length = 1050
Score = 119 (46.9 bits), Expect = 0.00038, P = 0.00038
Identities = 37/171 (21%), Positives = 69/171 (40%)
Query: 60 CG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCV 117
CG +LA S+ G+L +WG+ D +T+ P + ++++ + G HC+
Sbjct: 91 CGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCL 150
Query: 118 SVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVV 177
++ G+ +TWG + + ++F S S Q+ +P Q + +
Sbjct: 151 ALAADGQFFTWG-KNSHGQLGLGKEFPSQASPQR--VRSLEGIPLAQVAAGGAHSFALSL 207
Query: 178 KRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILS 228
+ DE SPC V L K+ ++ G HT +L+
Sbjct: 208 SGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLT 258
>UNIPROTKB|F1N7C1 [details] [associations]
symbol:HERC6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA] Pfam:PF00632 InterPro:IPR000569 PROSITE:PS50237
SMART:SM00119 INTERPRO:IPR000408 Pfam:PF00415 GO:GO:0005634
GO:GO:0005737 GO:GO:0016567 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 GO:GO:0004842 PRINTS:PR00633 PROSITE:PS00626
PROSITE:PS50012 SUPFAM:SSF56204 GeneTree:ENSGT00660000095216
OMA:HIFAGTY EMBL:DAAA02017014 IPI:IPI00825680 UniGene:Bt.42179
Ensembl:ENSBTAT00000027362 NextBio:20874614 Uniprot:F1N7C1
Length = 1016
Score = 104 (41.7 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 33/103 (32%), Positives = 50/103 (48%)
Query: 30 GTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSG 89
G PE+ P L + L CG +LA G++ WG+A EGQ L G
Sbjct: 63 GEQPERIPALETLNVALVS-------CGKE--HSLAVCHKGRVFAWGAAS-EGQ--LGIG 110
Query: 90 KHGETPE-PFPLPTEASV--VKAAAGWAHCVSVTEAGEVYTWG 129
+ ET P + T A + ++ A G H V+++E G+V++WG
Sbjct: 111 EFKETTFIPKKIKTLAGIKIIQVACGHYHSVALSEDGQVFSWG 153
Score = 58 (25.5 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 18/40 (45%), Positives = 23/40 (57%)
Query: 195 GDEFFT-LSPCLVTLNPGVKITKVAAGGRHT--LILSGKS 231
G EF + SP V G+ + +VAAGG H+ L LSG S
Sbjct: 163 GKEFPSQASPQRVRSLEGIPLAQVAAGGHHSFALSLSGTS 202
>UNIPROTKB|D4ACN3 [details] [associations]
symbol:Herc2 "Protein Herc2" species:10116 "Rattus
norvegicus" [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0020037 "heme binding"
evidence=IEA] Pfam:PF00632 InterPro:IPR000433 InterPro:IPR000569
InterPro:IPR001199 InterPro:IPR010606 Pfam:PF00173 Pfam:PF00569
Pfam:PF06701 PROSITE:PS01357 PROSITE:PS50135 PROSITE:PS50237
PROSITE:PS50255 PROSITE:PS51416 SMART:SM00119 SMART:SM00291
RGD:1307989 INTERPRO:IPR000408 Pfam:PF00415 GO:GO:0005634
GO:GO:0005743 GO:GO:0046872 GO:GO:0008270 GO:GO:0006281
GO:GO:0007283 GO:GO:0020037 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 Gene3D:3.10.120.10 SUPFAM:SSF55856
InterPro:IPR008979 SUPFAM:SSF49785 GO:GO:0004842 PRINTS:PR00633
PROSITE:PS00626 PROSITE:PS50012 InterPro:IPR004939 Pfam:PF03256
PROSITE:PS51284 Gene3D:2.30.30.30 InterPro:IPR021097
InterPro:IPR014722 Pfam:PF11515 SUPFAM:SSF56204
GeneTree:ENSGT00700000104208 OrthoDB:EOG41C6V9 InterPro:IPR006624
SMART:SM00706 IPI:IPI00764717 Ensembl:ENSRNOT00000019245
ArrayExpress:D4ACN3 Uniprot:D4ACN3
Length = 4779
Score = 119 (46.9 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 28/72 (38%), Positives = 35/72 (48%)
Query: 60 CG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCV 117
CG F++A ++SG + TWG D + S H P V+ A G HCV
Sbjct: 4149 CGSQFSVALTKSGAVYTWGKGDYHRLGH-GSDDHVRRPRQVQGLQGKKVIAIATGSLHCV 4207
Query: 118 SVTEAGEVYTWG 129
TE GEVYTWG
Sbjct: 4208 CCTEDGEVYTWG 4219
Score = 118 (46.6 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 28/77 (36%), Positives = 40/77 (51%)
Query: 55 VCGGGCG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAG 112
VC CG F+LA ++SG + TWG D + S H P+ +V A G
Sbjct: 3151 VCQIECGAQFSLALTKSGVVWTWGKGDYFRLGH-GSDVHVRKPQVVEGLRGKKIVHVAVG 3209
Query: 113 WAHCVSVTEAGEVYTWG 129
HC++VT++G+VY WG
Sbjct: 3210 ALHCLAVTDSGQVYAWG 3226
Score = 54 (24.1 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 203 PCLVTLNPGVKITKVAAGGRHTLILSGKSLESA 235
P LV G K+ +VA G HTL S SA
Sbjct: 4237 PRLVAALQGKKVNRVACGSAHTLAWSTSKPASA 4269
>UNIPROTKB|E1C514 [details] [associations]
symbol:HERC3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] Pfam:PF00632
InterPro:IPR000569 PROSITE:PS50237 SMART:SM00119 INTERPRO:IPR000408
Pfam:PF00415 GO:GO:0005737 GO:GO:0016567 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0004842 PRINTS:PR00633
PROSITE:PS00626 PROSITE:PS50012 SUPFAM:SSF56204
GeneTree:ENSGT00660000095216 OMA:SPAVDFR EMBL:AADN02016126
EMBL:AADN02016127 EMBL:AADN02016128 EMBL:AADN02016129
IPI:IPI00576498 Ensembl:ENSGALT00000016877 ArrayExpress:E1C514
Uniprot:E1C514
Length = 1050
Score = 118 (46.6 bits), Expect = 0.00050, P = 0.00050
Identities = 39/172 (22%), Positives = 74/172 (43%)
Query: 60 CG--FALATSESGKLITWGSADDEGQSYLTSGKHGET-PEPFPLPTEASVVKAAAGWAHC 116
CG ++A S+ G++ +WG+ D GQ LT+ + T P + ++++ + G HC
Sbjct: 91 CGESHSVALSDQGQVFSWGAGSD-GQLGLTTIEDAVTVPRLIKKLNQQTILQISCGNWHC 149
Query: 117 VSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEV 176
+++ G+ +TWG + + ++ S S Q+ + +P Q +
Sbjct: 150 LALAADGQFFTWG-QNSYGQLGLGKECPSQASPQRVKS--LDGIPLAQVAAGGAHSFALS 206
Query: 177 VKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILS 228
+ + S DE SPC V L K+ ++ G HT +L+
Sbjct: 207 LSGAVFGWGKNSSGQLGLSDERDRESPCHVKLLRSQKVVYISCGEEHTAVLT 258
>UNIPROTKB|O95714 [details] [associations]
symbol:HERC2 "E3 ubiquitin-protein ligase HERC2"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0020037 "heme binding" evidence=IEA] [GO:0005743
"mitochondrial inner membrane" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0005814 "centriole"
evidence=IEA] [GO:0042787 "protein ubiquitination involved in
ubiquitin-dependent protein catabolic process" evidence=IBA]
[GO:0005085 "guanyl-nucleotide exchange factor activity"
evidence=NAS] [GO:0006886 "intracellular protein transport"
evidence=NAS] [GO:0006281 "DNA repair" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IDA] [GO:0016567
"protein ubiquitination" evidence=IDA] [GO:0006974 "response to DNA
damage stimulus" evidence=IDA] [GO:0031625 "ubiquitin protein
ligase binding" evidence=IPI] [GO:0032183 "SUMO binding"
evidence=IDA] Pfam:PF00632 InterPro:IPR000433 InterPro:IPR000569
InterPro:IPR001199 InterPro:IPR010606 Pfam:PF00173 Pfam:PF00569
Pfam:PF06701 PROSITE:PS00191 PROSITE:PS01357 PROSITE:PS50082
PROSITE:PS50135 PROSITE:PS50237 PROSITE:PS50255 PROSITE:PS50294
PROSITE:PS51416 SMART:SM00119 SMART:SM00291 UniPathway:UPA00143
INTERPRO:IPR000408 Pfam:PF00415 GO:GO:0005634 GO:GO:0005737
Reactome:REACT_6900 GO:GO:0006886 GO:GO:0005814 PROSITE:PS00678
GO:GO:0005743 GO:GO:0046872 GO:GO:0008270 GO:GO:0006281
GO:GO:0007283 GO:GO:0020037 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 GO:GO:0005085 Gene3D:3.10.120.10 SUPFAM:SSF55856
InterPro:IPR008979 SUPFAM:SSF49785 GO:GO:0004842 PRINTS:PR00633
PROSITE:PS00625 PROSITE:PS00626 PROSITE:PS50012 InterPro:IPR004939
Pfam:PF03256 PROSITE:PS51284 GO:GO:0042787 GO:GO:0032183
Gene3D:2.30.30.30 InterPro:IPR021097 InterPro:IPR014722
Pfam:PF11515 SUPFAM:SSF56204 eggNOG:COG5021 CTD:8924 KO:K10595
OMA:QLAFTRD EMBL:AF071172 EMBL:AC091304 EMBL:AC126332 EMBL:AC135329
EMBL:AF224243 EMBL:AF224242 EMBL:AF224245 EMBL:AF224244
EMBL:AF224249 EMBL:AF224246 EMBL:AF224247 EMBL:AF224248
EMBL:AF224251 EMBL:AF224250 EMBL:AF224255 EMBL:AF224254
EMBL:AF224252 EMBL:AF224253 EMBL:AF224257 EMBL:AF224256
EMBL:AF225401 EMBL:AF225400 EMBL:AF225404 EMBL:AF225402
EMBL:AF225403 EMBL:AF225407 EMBL:AF225405 EMBL:AF225406
EMBL:AF225409 EMBL:AF225408 IPI:IPI00005826 RefSeq:NP_004658.3
UniGene:Hs.434890 UniGene:Hs.610412 UniGene:Hs.741019 PDB:2KEO
PDB:3KCI PDBsum:2KEO PDBsum:3KCI ProteinModelPortal:O95714
SMR:O95714 DIP:DIP-37632N IntAct:O95714 STRING:O95714
PhosphoSite:O95714 PaxDb:O95714 PRIDE:O95714
Ensembl:ENST00000261609 GeneID:8924 KEGG:hsa:8924 UCSC:uc001zbj.3
GeneCards:GC15M028356 H-InvDB:HIX0012044 H-InvDB:HIX0017540
H-InvDB:HIX0038121 H-InvDB:HIX0038320 H-InvDB:HIX0038830
H-InvDB:HIX0173226 H-InvDB:HIX0173299 H-InvDB:HIX0194348
HGNC:HGNC:4868 HPA:CAB017188 MIM:227220 MIM:605837
neXtProt:NX_O95714 PharmGKB:PA29243 HOVERGEN:HBG081598
InParanoid:O95714 OrthoDB:EOG41C6V9 PhylomeDB:O95714
EvolutionaryTrace:O95714 GenomeRNAi:8924 NextBio:33552
ArrayExpress:O95714 Bgee:O95714 Genevestigator:O95714
GermOnline:ENSG00000128731 InterPro:IPR006624 SMART:SM00706
Uniprot:O95714
Length = 4834
Score = 119 (46.9 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 28/72 (38%), Positives = 35/72 (48%)
Query: 60 CG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCV 117
CG F++A ++SG + TWG D + S H P V+ A G HCV
Sbjct: 4204 CGSQFSVALTKSGAVYTWGKGDYHRLGH-GSDDHVRRPRQVQGLQGKKVIAIATGSLHCV 4262
Query: 118 SVTEAGEVYTWG 129
TE GEVYTWG
Sbjct: 4263 CCTEDGEVYTWG 4274
Score = 118 (46.6 bits), Expect = 0.00068, Sum P(2) = 0.00068
Identities = 28/77 (36%), Positives = 40/77 (51%)
Query: 55 VCGGGCG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAG 112
VC CG F+LA ++SG + TWG D + S H P+ +V A G
Sbjct: 3207 VCQIECGAQFSLALTKSGVVWTWGKGDYFRLGH-GSDVHVRKPQVVEGLRGKKIVHVAVG 3265
Query: 113 WAHCVSVTEAGEVYTWG 129
HC++VT++G+VY WG
Sbjct: 3266 ALHCLAVTDSGQVYAWG 3282
Score = 115 (45.5 bits), Expect = 0.00094, Sum P(2) = 0.00094
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 54 DVCGGGCG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAA 111
DV CG F++A ++ G++ +WG D++ + T +H P+ V+ AA
Sbjct: 658 DVVKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHGTE-EHVRYPKLLEGLQGKKVIDVAA 716
Query: 112 GWAHCVSVTEAGEVYTWG 129
G HC+++TE EV++WG
Sbjct: 717 GSTHCLALTEDSEVHSWG 734
Score = 56 (24.8 bits), Expect = 0.00094, Sum P(2) = 0.00094
Identities = 32/130 (24%), Positives = 53/130 (40%)
Query: 123 GEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKT 182
GE+ GW +V D GS S++ GK L + P + + + E+
Sbjct: 1896 GELGEDGW------IRVQWDTGSTNSYRMGKEGKYD-LKLAELPAAAQPSAEDS-DTEDD 1947
Query: 183 SSAREESENPASGDEFFTLSPCLVT---LNPGV-------KITKVAAGGRHTLILSGKSL 232
S A + N FT + L+ L+ GV + TK G L+ SG +
Sbjct: 1948 SEAEQTERNIHPTAMMFTSTINLLQTLCLSAGVHAEIMQSEATKTLCGLLRMLVESGTTD 2007
Query: 233 ESAEPKRLIF 242
+++ P RL++
Sbjct: 2008 KTSSPNRLVY 2017
Score = 54 (24.1 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 203 PCLVTLNPGVKITKVAAGGRHTLILSGKSLESA 235
P LV G K+ +VA G HTL S SA
Sbjct: 4292 PRLVAALQGKKVNRVACGSAHTLAWSTSKPASA 4324
>MGI|MGI:103234 [details] [associations]
symbol:Herc2 "hect (homologous to the E6-AP (UBE3A) carboxyl
terminus) domain and RCC1 (CHC1)-like domain (RLD) 2" species:10090
"Mus musculus" [GO:0004842 "ubiquitin-protein ligase activity"
evidence=ISO;IBA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO;IBA] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005743 "mitochondrial inner membrane"
evidence=IDA] [GO:0005856 "cytoskeleton" evidence=IEA] [GO:0006281
"DNA repair" evidence=ISO] [GO:0006464 "cellular protein
modification process" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=ISO] [GO:0007283 "spermatogenesis"
evidence=IMP] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016567 "protein ubiquitination" evidence=ISO] [GO:0016874
"ligase activity" evidence=IEA] [GO:0020037 "heme binding"
evidence=IEA] [GO:0031625 "ubiquitin protein ligase binding"
evidence=ISO] [GO:0032183 "SUMO binding" evidence=ISO] [GO:0042787
"protein ubiquitination involved in ubiquitin-dependent protein
catabolic process" evidence=IBA] [GO:0046872 "metal ion binding"
evidence=IEA] Pfam:PF00632 InterPro:IPR000433 InterPro:IPR000569
InterPro:IPR001199 InterPro:IPR010606 Pfam:PF00173 Pfam:PF00569
Pfam:PF06701 PROSITE:PS00191 PROSITE:PS01357 PROSITE:PS50082
PROSITE:PS50135 PROSITE:PS50237 PROSITE:PS50255 PROSITE:PS50294
PROSITE:PS51416 SMART:SM00119 SMART:SM00291 UniPathway:UPA00143
MGI:MGI:103234 INTERPRO:IPR000408 Pfam:PF00415 GO:GO:0005634
GO:GO:0005814 PROSITE:PS00678 GO:GO:0005743 GO:GO:0046872
GO:GO:0008270 GO:GO:0006281 GO:GO:0007283 GO:GO:0020037
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
Gene3D:3.10.120.10 SUPFAM:SSF55856 InterPro:IPR008979
SUPFAM:SSF49785 GO:GO:0004842 PRINTS:PR00633 PROSITE:PS00625
PROSITE:PS00626 PROSITE:PS50012 InterPro:IPR004939 Pfam:PF03256
PROSITE:PS51284 GO:GO:0042787 GO:GO:0032183 Gene3D:2.30.30.30
InterPro:IPR021097 InterPro:IPR014722 Pfam:PF11515 SUPFAM:SSF56204
eggNOG:COG5021 GeneTree:ENSGT00700000104208 CTD:8924 KO:K10595
OMA:QLAFTRD HOVERGEN:HBG081598 OrthoDB:EOG41C6V9 InterPro:IPR006624
SMART:SM00706 EMBL:AF061529 EMBL:AF071173 EMBL:AC102121
EMBL:AC102150 EMBL:AK141515 EMBL:AK148361 EMBL:AK161826
EMBL:AK162270 EMBL:AK162708 EMBL:AK220338 EMBL:BC044667
EMBL:BC054829 IPI:IPI00309574 IPI:IPI00314989 RefSeq:NP_034548.2
UniGene:Mm.20929 ProteinModelPortal:Q4U2R1 SMR:Q4U2R1 STRING:Q4U2R1
PhosphoSite:Q4U2R1 PaxDb:Q4U2R1 PRIDE:Q4U2R1
Ensembl:ENSMUST00000076226 Ensembl:ENSMUST00000164095 GeneID:15204
KEGG:mmu:15204 UCSC:uc009hdv.1 InParanoid:Q4U2R1 ChiTaRS:HERC2
NextBio:287753 Bgee:Q4U2R1 Genevestigator:Q4U2R1
GermOnline:ENSMUSG00000030451 Uniprot:Q4U2R1
Length = 4836
Score = 119 (46.9 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 28/72 (38%), Positives = 35/72 (48%)
Query: 60 CG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCV 117
CG F++A ++SG + TWG D + S H P V+ A G HCV
Sbjct: 4206 CGSQFSVALTKSGAVYTWGKGDYHRLGH-GSDDHVRRPRQVQGLQGKKVIAIATGSLHCV 4264
Query: 118 SVTEAGEVYTWG 129
TE GEVYTWG
Sbjct: 4265 CCTEDGEVYTWG 4276
Score = 118 (46.6 bits), Expect = 0.00068, Sum P(2) = 0.00068
Identities = 28/77 (36%), Positives = 40/77 (51%)
Query: 55 VCGGGCG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAG 112
VC CG F+LA ++SG + TWG D + S H P+ +V A G
Sbjct: 3208 VCQIECGAQFSLALTKSGVVWTWGKGDYFRLGH-GSDVHVRKPQVVEGLRGKKIVHVAVG 3266
Query: 113 WAHCVSVTEAGEVYTWG 129
HC++VT++G+VY WG
Sbjct: 3267 ALHCLAVTDSGQVYAWG 3283
Score = 54 (24.1 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 203 PCLVTLNPGVKITKVAAGGRHTLILSGKSLESA 235
P LV G K+ +VA G HTL S SA
Sbjct: 4294 PRLVAALQGKKVNRVACGSAHTLAWSTSKPASA 4326
>RGD|1307803 [details] [associations]
symbol:Herc3 "HECT and RLD domain containing E3 ubiquitin
protein ligase 3" species:10116 "Rattus norvegicus" [GO:0004842
"ubiquitin-protein ligase activity" evidence=IBA] [GO:0005634
"nucleus" evidence=IBA] [GO:0005737 "cytoplasm" evidence=ISO;IBA]
[GO:0042787 "protein ubiquitination involved in ubiquitin-dependent
protein catabolic process" evidence=IBA] Pfam:PF00632
InterPro:IPR000569 PROSITE:PS50237 SMART:SM00119 RGD:1307803
INTERPRO:IPR000408 Pfam:PF00415 GO:GO:0005634 GO:GO:0005737
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0004842
PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012 GO:GO:0042787
SUPFAM:SSF56204 EMBL:CH474011 IPI:IPI00568958 UniGene:Rn.203362
Ensembl:ENSRNOT00000009694 UCSC:RGD:1307803 Uniprot:D3ZYI2
Length = 909
Score = 117 (46.2 bits), Expect = 0.00054, P = 0.00054
Identities = 37/171 (21%), Positives = 69/171 (40%)
Query: 60 CG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCV 117
CG +LA S+ G+L +WG+ D +T+ P + ++++ + G HC+
Sbjct: 91 CGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCL 150
Query: 118 SVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVV 177
++ G+ +TWG + + ++F S S Q+ +P Q + +
Sbjct: 151 ALAADGQFFTWG-KNSHGQLGLGKEFPSQTSPQR--VRSLEGIPLAQVAAGGAHSFALSL 207
Query: 178 KRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILS 228
+ DE SPC V L K+ ++ G HT +L+
Sbjct: 208 SGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLT 258
>UNIPROTKB|E2RMB0 [details] [associations]
symbol:HERC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] Pfam:PF00632
InterPro:IPR000569 PROSITE:PS50237 SMART:SM00119 INTERPRO:IPR000408
Pfam:PF00415 GO:GO:0005737 GO:GO:0016567 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0004842 PRINTS:PR00633
PROSITE:PS00626 PROSITE:PS50012 SUPFAM:SSF56204
GeneTree:ENSGT00660000095216 CTD:8916 KO:K10614 OMA:SPAVDFR
EMBL:AAEX03016754 EMBL:AAEX03016753 RefSeq:XP_535653.3
Ensembl:ENSCAFT00000015540 GeneID:478475 KEGG:cfa:478475
Uniprot:E2RMB0
Length = 1050
Score = 116 (45.9 bits), Expect = 0.00084, P = 0.00084
Identities = 36/171 (21%), Positives = 69/171 (40%)
Query: 60 CG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCV 117
CG +LA S+ G+L +WG+ D +T+ P + ++++ + G HC+
Sbjct: 91 CGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCL 150
Query: 118 SVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVV 177
++ G+ +TWG + + +++ S S Q+ +P Q + +
Sbjct: 151 ALAADGQFFTWG-KNSHGQLGLGKEYPSQASPQR--VRSLEGIPLAQVAAGGAHSFALSL 207
Query: 178 KRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILS 228
+ DE SPC V L K+ ++ G HT +L+
Sbjct: 208 SGAVFGWGMNNAGQLGLSDEEDRESPCHVKLLRTQKVVYISCGEEHTAVLT 258
>UNIPROTKB|F1NBC5 [details] [associations]
symbol:HERC3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
Pfam:PF00632 InterPro:IPR000569 PROSITE:PS50237 SMART:SM00119
INTERPRO:IPR000408 Pfam:PF00415 GO:GO:0016567 GO:GO:0005622
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0004842
PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012 SUPFAM:SSF56204
GeneTree:ENSGT00660000095216 EMBL:AADN02016126 EMBL:AADN02016127
EMBL:AADN02016128 EMBL:AADN02016129 IPI:IPI00572483
Ensembl:ENSGALT00000016878 ArrayExpress:F1NBC5 Uniprot:F1NBC5
Length = 1050
Score = 119 (46.9 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 49/204 (24%), Positives = 82/204 (40%)
Query: 26 GYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSY 85
G L S P PI A L G CG AL S+ G++ +WG+ D GQ
Sbjct: 64 GQLGHESEGSKP--EPIGA-LAGQHIVHVACGESHSVAL--SDQGQVFSWGAGSD-GQLG 117
Query: 86 LTSGKHGET-PEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFG 144
LT+ + T P + ++++ + G HC+++ G+ +TWG + + ++
Sbjct: 118 LTTIEDAVTVPRLIKKLNQQTILQISCGNWHCLALAADGQFFTWG-QNSYGQLGLGKECP 176
Query: 145 SAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPC 204
S S Q+ + +P Q + + + S DE SPC
Sbjct: 177 SQASPQRVKS--LDGIPLAQVAAGGAHSFALSLSGAVFGWGKNSSGQLGLSDERDRESPC 234
Query: 205 LVTLNPGVKITKVAAGGRHTLILS 228
V L K+ ++ G HT +L+
Sbjct: 235 HVKLLRSQKVVYISCGEEHTAVLT 258
Score = 38 (18.4 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 211 GVKITKVAAGGRHTL 225
G +++++A G HTL
Sbjct: 293 GSEVSQIACGRHHTL 307
>UNIPROTKB|G3V2I3 [details] [associations]
symbol:RCCD1 "RCC1 domain-containing protein 1"
species:9606 "Homo sapiens" [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] INTERPRO:IPR000408
Pfam:PF00415 GO:GO:0005886 GO:GO:0005737 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 PRINTS:PR00633 PROSITE:PS00626
PROSITE:PS50012 EMBL:AC068831 HGNC:HGNC:30457
ProteinModelPortal:G3V2I3 SMR:G3V2I3 Ensembl:ENST00000555155
ArrayExpress:G3V2I3 Bgee:G3V2I3 Uniprot:G3V2I3
Length = 374
Score = 110 (43.8 bits), Expect = 0.00099, P = 0.00099
Identities = 32/92 (34%), Positives = 41/92 (44%)
Query: 59 GCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKA---AAGWAH 115
G AL +G++ +WG GQ L G EP L +V A A GW H
Sbjct: 166 GAEHALLLDAAGQVFSWGGGR-HGQ--LGHGTLEAELEPRLLEALQGLVMAEVAAGGW-H 221
Query: 116 CVSVTEAGEVYTWGWRECVPSAKVTRDFGSAG 147
V V+E G++Y WGW E A TR+ G
Sbjct: 222 SVCVSETGDIYIWGWNESGQLALPTRNLAEDG 253
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.312 0.130 0.401 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 254 241 0.00094 113 3 11 23 0.38 34
32 0.44 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 31
No. of states in DFA: 619 (66 KB)
Total size of DFA: 201 KB (2111 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 23.67u 0.11s 23.78t Elapsed: 00:00:01
Total cpu time: 23.67u 0.11s 23.78t Elapsed: 00:00:01
Start: Fri May 10 04:34:53 2013 End: Fri May 10 04:34:54 2013