Query 025335
Match_columns 254
No_of_seqs 228 out of 1382
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 04:48:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025335.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025335hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1427 Uncharacterized conser 100.0 3.3E-28 7.2E-33 201.6 11.1 186 6-235 63-251 (443)
2 COG5184 ATS1 Alpha-tubulin sup 99.9 3.7E-26 8E-31 200.1 14.2 177 5-236 180-364 (476)
3 COG5184 ATS1 Alpha-tubulin sup 99.9 5.2E-26 1.1E-30 199.2 14.5 134 3-139 106-266 (476)
4 KOG1427 Uncharacterized conser 99.9 2.6E-24 5.7E-29 178.6 9.7 118 18-137 18-143 (443)
5 KOG0783 Uncharacterized conser 99.8 2.7E-20 5.8E-25 171.4 10.3 216 13-235 135-358 (1267)
6 KOG0783 Uncharacterized conser 99.7 1E-17 2.3E-22 154.5 10.6 125 10-138 186-317 (1267)
7 KOG1428 Inhibitor of type V ad 99.7 2.2E-17 4.8E-22 158.0 12.8 76 103-234 766-841 (3738)
8 KOG1428 Inhibitor of type V ad 99.7 4.1E-16 8.8E-21 149.5 16.2 90 49-140 766-855 (3738)
9 PF00415 RCC1: Regulator of ch 99.5 1.1E-14 2.4E-19 92.5 4.1 50 69-119 1-51 (51)
10 PF00415 RCC1: Regulator of ch 99.4 1.4E-13 3E-18 87.4 4.9 31 197-227 21-51 (51)
11 PF13540 RCC1_2: Regulator of 99.4 4.3E-13 9.3E-18 75.1 4.3 30 106-135 1-30 (30)
12 KOG0941 E3 ubiquitin protein l 99.2 2.1E-13 4.6E-18 126.9 -8.4 96 41-138 5-107 (850)
13 PF13540 RCC1_2: Regulator of 99.1 1.7E-10 3.7E-15 64.5 4.1 30 52-83 1-30 (30)
14 KOG0941 E3 ubiquitin protein l 98.6 2E-09 4.3E-14 100.8 -5.0 127 6-134 19-156 (850)
15 KOG3669 Uncharacterized conser 90.2 6.8 0.00015 36.8 11.9 108 7-128 189-299 (705)
16 smart00706 TECPR Beta propelle 83.1 2.6 5.7E-05 23.7 3.6 25 104-128 8-33 (35)
17 COG4257 Vgb Streptogramin lyas 80.4 8 0.00017 33.2 6.9 107 12-139 65-173 (353)
18 PF07569 Hira: TUP1-like enhan 78.9 3.3 7.2E-05 34.2 4.3 29 103-131 12-40 (219)
19 PF07569 Hira: TUP1-like enhan 78.8 7.3 0.00016 32.2 6.3 70 9-78 21-95 (219)
20 PF06739 SBBP: Beta-propeller 76.9 2.7 5.8E-05 24.4 2.3 19 114-132 15-33 (38)
21 KOG0943 Predicted ubiquitin-pr 74.3 5.4 0.00012 40.9 4.8 79 49-128 370-453 (3015)
22 PF12341 DUF3639: Protein of u 67.2 17 0.00038 19.4 3.9 25 104-128 2-26 (27)
23 KOG0943 Predicted ubiquitin-pr 64.7 11 0.00025 38.7 4.8 32 102-133 372-403 (3015)
24 KOG3669 Uncharacterized conser 63.0 82 0.0018 29.9 9.7 71 105-237 228-300 (705)
25 COG4257 Vgb Streptogramin lyas 62.3 54 0.0012 28.4 7.8 97 12-128 107-205 (353)
26 PF13418 Kelch_4: Galactose ox 60.8 9.4 0.0002 22.9 2.4 17 113-129 3-19 (49)
27 KOG1034 Transcriptional repres 55.3 39 0.00084 29.8 5.9 57 64-129 323-381 (385)
28 PF11725 AvrE: Pathogenicity f 54.6 1.2E+02 0.0026 32.7 10.1 66 49-128 702-769 (1774)
29 KOG4693 Uncharacterized conser 53.5 1.5E+02 0.0032 25.6 9.4 65 60-130 80-147 (392)
30 PF08450 SGL: SMP-30/Gluconola 53.5 98 0.0021 25.4 8.2 108 13-130 90-202 (246)
31 KOG1034 Transcriptional repres 52.4 45 0.00099 29.3 5.9 57 16-77 325-382 (385)
32 KOG1900 Nuclear pore complex, 50.9 80 0.0017 32.9 8.1 64 13-78 92-157 (1311)
33 TIGR01063 gyrA DNA gyrase, A s 46.1 3.2E+02 0.007 27.4 15.2 115 10-133 546-670 (800)
34 PLN02153 epithiospecifier prot 45.1 2.1E+02 0.0045 24.9 11.0 18 113-131 129-146 (341)
35 KOG0315 G-protein beta subunit 44.4 2E+02 0.0044 24.5 9.2 58 62-131 138-197 (311)
36 PF13938 DUF4213: Domain of un 42.3 27 0.00059 24.1 2.6 24 209-232 9-32 (87)
37 PF01436 NHL: NHL repeat; Int 42.3 49 0.0011 17.4 3.1 18 115-132 5-22 (28)
38 PF13854 Kelch_5: Kelch motif 39.9 35 0.00075 19.8 2.5 16 113-129 6-21 (42)
39 PF13964 Kelch_6: Kelch motif 39.3 31 0.00068 20.6 2.3 19 113-132 3-21 (50)
40 cd00058 FGF Acidic and basic f 38.5 1.6E+02 0.0035 21.8 7.2 58 11-76 8-65 (123)
41 PF03785 Peptidase_C25_C: Pept 38.5 53 0.0011 22.6 3.4 32 103-134 15-47 (81)
42 KOG2444 WD40 repeat protein [G 38.3 82 0.0018 26.3 5.1 64 59-133 69-134 (238)
43 PF11725 AvrE: Pathogenicity f 37.0 1.7E+02 0.0037 31.6 8.1 73 49-123 743-815 (1774)
44 PRK05560 DNA gyrase subunit A; 36.5 4.6E+02 0.0099 26.3 14.7 114 11-133 549-672 (805)
45 PF07646 Kelch_2: Kelch motif; 35.8 43 0.00093 20.0 2.5 17 114-131 4-20 (49)
46 TIGR03300 assembly_YfgL outer 35.6 3.1E+02 0.0066 24.1 9.7 15 114-128 362-376 (377)
47 PF07494 Reg_prop: Two compone 35.5 48 0.0011 16.7 2.3 14 115-128 8-21 (24)
48 KOG0278 Serine/threonine kinas 33.7 3.1E+02 0.0066 23.5 7.9 104 13-132 158-288 (334)
49 PF08887 GAD-like: GAD-like do 33.3 41 0.00089 24.5 2.4 22 112-133 78-99 (109)
50 KOG1274 WD40 repeat protein [G 32.1 5.5E+02 0.012 26.0 11.6 67 62-128 479-549 (933)
51 PF07312 DUF1459: Protein of u 31.3 39 0.00084 23.0 1.8 11 23-33 60-70 (84)
52 PF13938 DUF4213: Domain of un 30.8 76 0.0017 21.8 3.4 22 103-124 11-32 (87)
53 KOG2055 WD40 repeat protein [G 30.5 1.2E+02 0.0027 27.9 5.4 68 13-99 359-429 (514)
54 KOG0315 G-protein beta subunit 29.7 3.6E+02 0.0078 23.1 10.4 58 13-78 139-197 (311)
55 KOG3885 Fibroblast growth fact 28.4 2.3E+02 0.005 22.1 5.9 25 51-75 68-92 (155)
56 TIGR01062 parC_Gneg DNA topois 27.5 6.2E+02 0.014 25.2 11.3 109 10-133 494-607 (735)
57 COG3557 Uncharacterized domain 26.6 1.3E+02 0.0028 23.7 4.1 37 216-253 37-75 (177)
58 KOG0318 WD40 repeat stress pro 26.5 2.7E+02 0.0058 26.3 6.8 12 17-28 78-89 (603)
59 COG5308 NUP170 Nuclear pore co 25.7 1.1E+02 0.0025 30.8 4.5 64 13-78 95-160 (1263)
60 PLN02153 epithiospecifier prot 25.6 4.4E+02 0.0096 22.8 11.1 17 114-131 244-260 (341)
61 PF06204 CBM_X: Putative carbo 25.6 1.8E+02 0.0039 19.0 4.3 29 105-133 26-54 (66)
62 PF12791 RsgI_N: Anti-sigma fa 25.4 51 0.0011 20.5 1.6 16 221-236 5-20 (56)
63 PF10168 Nup88: Nuclear pore c 24.5 7E+02 0.015 24.7 10.4 26 103-128 146-176 (717)
64 smart00442 FGF Acidic and basi 24.3 3E+02 0.0065 20.4 7.0 22 54-75 47-68 (126)
65 KOG1274 WD40 repeat protein [G 24.2 5.8E+02 0.013 25.8 9.0 100 13-134 481-587 (933)
66 TIGR01062 parC_Gneg DNA topois 24.0 7.3E+02 0.016 24.7 12.6 120 9-137 535-660 (735)
67 KOG0291 WD40-repeat-containing 23.3 7.6E+02 0.016 24.7 15.1 67 62-130 311-379 (893)
68 PF13186 SPASM: Iron-sulfur cl 23.1 67 0.0014 19.9 1.9 14 12-25 6-19 (64)
69 PF01344 Kelch_1: Kelch motif; 22.8 1.1E+02 0.0023 17.7 2.6 15 114-129 4-18 (47)
70 KOG0289 mRNA splicing factor [ 22.7 3.1E+02 0.0068 25.2 6.4 68 62-132 351-420 (506)
71 PF00167 FGF: Fibroblast growt 22.4 3.1E+02 0.0068 19.9 6.3 59 11-77 10-68 (122)
72 PF06462 Hyd_WA: Propeller; I 22.3 95 0.0021 17.0 2.1 13 62-74 2-14 (32)
73 PLN02193 nitrile-specifier pro 22.0 6.3E+02 0.014 23.3 12.0 17 113-130 270-286 (470)
74 PHA02102 hypothetical protein 21.6 83 0.0018 20.4 2.0 16 9-24 53-68 (72)
75 KOG0641 WD40 repeat protein [G 21.2 2E+02 0.0043 24.1 4.6 64 63-133 37-111 (350)
76 CHL00121 rpl27 ribosomal prote 21.2 51 0.0011 22.9 1.0 22 216-237 50-71 (86)
77 PRK05561 DNA topoisomerase IV 20.6 8.5E+02 0.018 24.2 10.1 83 47-133 535-620 (742)
No 1
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=99.95 E-value=3.3e-28 Score=201.64 Aligned_cols=186 Identities=18% Similarity=0.189 Sum_probs=144.2
Q ss_pred CCcCCcceEEEecCCcEEEccCCC-CCCCCCCCc--ccceeeeecCCCCceEEEecCCCeEEEEeCCCcEEEEecCCCCC
Q 025335 6 SKREENEKMEECKETVVYMWGYLP-GTSPEKSPI--LSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEG 82 (254)
Q Consensus 6 ~~~~~~~~~~vt~~G~vy~wG~n~-g~~~~~~~~--~~p~~v~~~~~~~i~~V~~~g~~hs~aLt~~G~vy~wG~n~~~G 82 (254)
.||.+-|.++++-+|+.|.||.|+ ||++++... ..|+.+.-+...+|.+.++ |.+|+++||++|+||+||.| .+|
T Consensus 63 sG~~aaH~vli~megk~~~wGRNekGQLGhgD~k~~e~Ptvi~gL~~~~iv~AA~-GrnHTl~ltdtG~v~afGeN-K~G 140 (443)
T KOG1427|consen 63 SGCAAAHCVLIDMEGKCYTWGRNEKGQLGHGDMKQRERPTVISGLSKHKIVKAAA-GRNHTLVLTDTGQVLAFGEN-KYG 140 (443)
T ss_pred cccchhhEEEEecccceeecccCccCccCccchhhccCCchhhhhhhhhHHHHhh-ccCcEEEEecCCcEEEeccc-ccc
Confidence 466677789999999999999998 899887543 4666666677788888888 88999999999999999999 899
Q ss_pred ccccCCCCCCCCcEEecCCCCCceEEEEeCCCeEEEEEcCCcEEEEcCCCCCCCCCCcCCCCCCCCcccCCCCCcCCCCC
Q 025335 83 QSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPT 162 (254)
Q Consensus 83 qLG~g~~~~~~~p~~v~~~~~~~i~~Ia~G~~hs~aLt~~G~vy~wG~n~~GQLG~~~~~~~~~~~~~~~~~g~~~~~~~ 162 (254)
|||+++.+.....++.+--...+|+.|+||.++++.|+..+.+.+.|.-.|||||+-.. ..++.
T Consensus 141 QlGlgn~~~~v~s~~~~~~~~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td----------------~~~~~ 204 (443)
T KOG1427|consen 141 QLGLGNAKNEVESTPLPCVVSDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTD----------------NEFNM 204 (443)
T ss_pred cccccccccccccCCCccccCccceeeccccceEEEeecccceeecCCccccccccCcc----------------hhhcc
Confidence 99999765443333222223568999999999999999999999999999999994321 00000
Q ss_pred CCCCCCcccCCceeeeeeeeeeccCCCCCCCCCCCcccccceEEeeCCCCcEEEEEecCCeEEEEecCCcccc
Q 025335 163 EQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGKSLESA 235 (254)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~P~~v~~~~~~~I~~Ia~G~~hs~~Lt~~G~v~~ 235 (254)
+ ...-++. .+.++.|..|..+.+..|++++||.+||+|+++++.|+.
T Consensus 205 ~-------------~~~~~~~-------------~e~~pr~~~i~~~dgvqiv~~acg~nhtvavd~nkrVys 251 (443)
T KOG1427|consen 205 K-------------DSSVRLA-------------YEAQPRPKAIASLDGVQIVKVACGTNHTVAVDKNKRVYS 251 (443)
T ss_pred c-------------cccceee-------------eecCCCccccccccceeeEEEeccCcceeeecCCccEEE
Confidence 0 0000111 224677888989999999999999999999999986554
No 2
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.94 E-value=3.7e-26 Score=200.14 Aligned_cols=177 Identities=21% Similarity=0.260 Sum_probs=134.9
Q ss_pred CCCcCCcceEEEecCCcEEEccCCC---CCCCCCCC----cccceeeeecCCCCceEEEecCCCeEEEEeCCCcEEEEec
Q 025335 5 GSKREENEKMEECKETVVYMWGYLP---GTSPEKSP----ILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGS 77 (254)
Q Consensus 5 ~~~~~~~~~~~vt~~G~vy~wG~n~---g~~~~~~~----~~~p~~v~~~~~~~i~~V~~~g~~hs~aLt~~G~vy~wG~ 77 (254)
...|+++..++++++|+||+||.+. +..+.... ..+++|+.+. ...|.+++. |+.|.+||+++|+||+||+
T Consensus 180 ~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~-~~~i~qla~-G~dh~i~lt~~G~vy~~Gs 257 (476)
T COG5184 180 KLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVP-KKAIVQLAA-GADHLIALTNEGKVYGWGS 257 (476)
T ss_pred EeecCCceEEEEccCCcEEEecCccccccccccccccccceeeeeeeecC-chheeeecc-CCceEEEEecCCcEEEecC
Confidence 4567888899999999999999753 22221111 1345555555 567889998 7889999999999999999
Q ss_pred CCCCCccccCCCCCCCCcEEecCCC-CCceEEEEeCCCeEEEEEcCCcEEEEcCCCCCCCCCCcCCCCCCCCcccCCCCC
Q 025335 78 ADDEGQSYLTSGKHGETPEPFPLPT-EASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGK 156 (254)
Q Consensus 78 n~~~GqLG~g~~~~~~~p~~v~~~~-~~~i~~Ia~G~~hs~aLt~~G~vy~wG~n~~GQLG~~~~~~~~~~~~~~~~~g~ 156 (254)
| +.||||.........+.++.-+. -..|+.|+||.+|++||+++|++|+||.|.+||||.. .+
T Consensus 258 ~-qkgqlG~~~~e~~~~~~lv~~~f~i~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~-~~-------------- 321 (476)
T COG5184 258 N-QKGQLGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAG-SD-------------- 321 (476)
T ss_pred C-cccccCCchhhhcccccccCChhhhhhhhhcccCcceEEEEcCCCeEEEeccchhcccccC-cc--------------
Confidence 9 89999998665555544443322 1237999999999999999999999999999999932 00
Q ss_pred cCCCCCCCCCCCcccCCceeeeeeeeeeccCCCCCCCCCCCcccccceEEeeCCCCcEEEEEecCCeEEEEecCCccccc
Q 025335 157 QSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGKSLESAE 236 (254)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~P~~v~~~~~~~I~~Ia~G~~hs~~Lt~~G~v~~~ 236 (254)
..+......|.....+.+..|.+|++|..|+++|..+|.+++.
T Consensus 322 -------------------------------------~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~ 364 (476)
T COG5184 322 -------------------------------------GEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAF 364 (476)
T ss_pred -------------------------------------cccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEe
Confidence 0011145667777777788899999999999999999977663
No 3
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.94 E-value=5.2e-26 Score=199.23 Aligned_cols=134 Identities=19% Similarity=0.304 Sum_probs=108.4
Q ss_pred ccCCCcCCcceEEEecCCcEEEccCCC-CCCCCCC---------------C---cccceeeee----cCCCCceEEEecC
Q 025335 3 MNGSKREENEKMEECKETVVYMWGYLP-GTSPEKS---------------P---ILSPIPARL----CGGDSWKDVCGGG 59 (254)
Q Consensus 3 ~~~~~~~~~~~~~vt~~G~vy~wG~n~-g~~~~~~---------------~---~~~p~~v~~----~~~~~i~~V~~~g 59 (254)
+-+..|+.+|.++++.||+||+||.|. |.++... . ..+|..++. ....++++++| |
T Consensus 106 i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~c-g 184 (476)
T COG5184 106 IIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLAC-G 184 (476)
T ss_pred eEEeecCCceEEeecCCCCEEEeccCcccccccccccccccccccccccchhhcccCCceeeccccccCChheEEeec-C
Confidence 345678889999999999999999996 6665444 1 345555554 12457899999 7
Q ss_pred CCeEEEEeCCCcEEEEecCCCCCccccCCCCCCC----CcEEecCCCCCceEEEEeCCCeEEEEEcCCcEEEEcCCCCCC
Q 025335 60 CGFALATSESGKLITWGSADDEGQSYLTSGKHGE----TPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVP 135 (254)
Q Consensus 60 ~~hs~aLt~~G~vy~wG~n~~~GqLG~g~~~~~~----~p~~v~~~~~~~i~~Ia~G~~hs~aLt~~G~vy~wG~n~~GQ 135 (254)
.+++++|+++|.||+||.+ ..+.++.+..+... +++|+.++ ...|+++|+|.+|.++|+++|++|+||+|..||
T Consensus 185 ~e~svil~~~G~V~~~gt~-r~~e~~~g~~~~s~k~~~~~~p~~v~-~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgq 262 (476)
T COG5184 185 WEISVILTADGRVYSWGTF-RCGELGQGSYKNSQKTSIQFTPLKVP-KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQ 262 (476)
T ss_pred CceEEEEccCCcEEEecCc-cccccccccccccccceeeeeeeecC-chheeeeccCCceEEEEecCCcEEEecCCcccc
Confidence 8999999999999999999 78999888444333 36777766 678999999999999999999999999999999
Q ss_pred CCCC
Q 025335 136 SAKV 139 (254)
Q Consensus 136 LG~~ 139 (254)
||+.
T Consensus 263 lG~~ 266 (476)
T COG5184 263 LGRP 266 (476)
T ss_pred cCCc
Confidence 9953
No 4
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=99.91 E-value=2.6e-24 Score=178.56 Aligned_cols=118 Identities=25% Similarity=0.362 Sum_probs=100.2
Q ss_pred cCCcEEEccCCC------CCCCCCCCcccceeeeecCCCCceEEEecCCC--eEEEEeCCCcEEEEecCCCCCccccCCC
Q 025335 18 KETVVYMWGYLP------GTSPEKSPILSPIPARLCGGDSWKDVCGGGCG--FALATSESGKLITWGSADDEGQSYLTSG 89 (254)
Q Consensus 18 ~~G~vy~wG~n~------g~~~~~~~~~~p~~v~~~~~~~i~~V~~~g~~--hs~aLt~~G~vy~wG~n~~~GqLG~g~~ 89 (254)
.-|++..+|.-. ...........|....-+.+..|+.|+. ||. |+++|+-+|+.|+||.| -.||||+++.
T Consensus 18 ~~g~ml~~g~v~wd~tgkRd~~~~~NL~sphR~~~l~gv~iR~Vas-G~~aaH~vli~megk~~~wGRN-ekGQLGhgD~ 95 (443)
T KOG1427|consen 18 KGGEMLFCGAVAWDITGKRDGAMEGNLVSPHRLRPLVGVNIRFVAS-GCAAAHCVLIDMEGKCYTWGRN-EKGQLGHGDM 95 (443)
T ss_pred CCccEEEeccchhhhhcccccccccccccceeccccccceEEEEec-ccchhhEEEEecccceeecccC-ccCccCccch
Confidence 456777777432 1222222456777777777888999998 555 99999999999999999 6999999999
Q ss_pred CCCCCcEEecCCCCCceEEEEeCCCeEEEEEcCCcEEEEcCCCCCCCC
Q 025335 90 KHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSA 137 (254)
Q Consensus 90 ~~~~~p~~v~~~~~~~i~~Ia~G~~hs~aLt~~G~vy~wG~n~~GQLG 137 (254)
+....|+.|+-+...+|++.|||.+|+++||++|+||+||+|.+||||
T Consensus 96 k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlG 143 (443)
T KOG1427|consen 96 KQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLG 143 (443)
T ss_pred hhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEeccccccccc
Confidence 999999999999999999999999999999999999999999999999
No 5
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.82 E-value=2.7e-20 Score=171.40 Aligned_cols=216 Identities=16% Similarity=0.117 Sum_probs=147.3
Q ss_pred eEEEecCCcEEEccCCC-CCCCC--CCCcccceeeeecC--CCCceEEEecCCCeEEEEeCCCcEEEEecCCCCCccccC
Q 025335 13 KMEECKETVVYMWGYLP-GTSPE--KSPILSPIPARLCG--GDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLT 87 (254)
Q Consensus 13 ~~~vt~~G~vy~wG~n~-g~~~~--~~~~~~p~~v~~~~--~~~i~~V~~~g~~hs~aLt~~G~vy~wG~n~~~GqLG~g 87 (254)
.++.|...+||.||.|. ..++. ......|..+.++. +.-+++|+. +..|+++|++.|+||++|-+ .-|.||+|
T Consensus 135 ~~~~d~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l-~kfHSvfl~~kgqvY~cGhG-~GGRlG~g 212 (1267)
T KOG0783|consen 135 HPVLDLPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQL-SKFHSVFLTEKGQVYVCGHG-AGGRLGFG 212 (1267)
T ss_pred ccccCCccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHH-hhceeeEecCCCcEEEeccC-CCCccCcC
Confidence 47788899999999985 33333 33345666666654 445677887 77899999999999999999 89999999
Q ss_pred CCCCCCCcEEecCCCCCceEEEEeCCCeEEEEEcCCcEEEEcCCCCCCCCCCcCCCCCCCCcccCCCCCcCCCCCCCCCC
Q 025335 88 SGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPP 167 (254)
Q Consensus 88 ~~~~~~~p~~v~~~~~~~i~~Ia~G~~hs~aLt~~G~vy~wG~n~~GQLG~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 167 (254)
+......|+.|+.+.+.+|++|++...|+++||++|.||+||.|.++|||......... .+.+-+.-+..+. .++..
T Consensus 213 deq~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~-~p~qI~a~r~kg~--~~iIg 289 (1267)
T KOG0783|consen 213 DEQYNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKD-DPIQITARRIKGF--KQIIG 289 (1267)
T ss_pred cccccccccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcC-chhhhhhHhhcch--hhhhh
Confidence 88888899999999999999999999999999999999999999999999543111000 0000000000000 01222
Q ss_pred CcccCCceeeeee--eeeeccCCCCCCCCC-CCcccccceEEeeCCCCcEEEEEecCCeEEEEecCCcccc
Q 025335 168 SDKRAGEEVVKRR--KTSSAREESENPASG-DEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGKSLESA 235 (254)
Q Consensus 168 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~g-~~~~~~~P~~v~~~~~~~I~~Ia~G~~hs~~Lt~~G~v~~ 235 (254)
++.+-.+...+.+ +..++-+ +.+.++. +...+..|+.+. .....|..|+|...-|+++++++.+++
T Consensus 290 vaAg~~hsVawt~~~VY~wGlN-~GQlGi~~n~~~Vt~Pr~l~-~~~~~v~~v~a~~~ATVc~~~~~~i~~ 358 (1267)
T KOG0783|consen 290 VAAGKSHSVAWTDTDVYSWGLN-NGQLGISDNISVVTTPRRLA-GLLSPVIHVVATTRATVCLLQNNSIIA 358 (1267)
T ss_pred hhcccceeeeeecceEEEeccc-CceecCCCCCceeecchhhc-ccccceEEEEecCccEEEEecCCcEEE
Confidence 3333333333333 3333321 1222222 344667887663 335689999999999999999986654
No 6
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.74 E-value=1e-17 Score=154.52 Aligned_cols=125 Identities=18% Similarity=0.222 Sum_probs=99.3
Q ss_pred CcceEEEecCCcEEEccCCC-CCCCCCCC--cccceeeeecCCCCceEEEecCCCeEEEEeCCCcEEEEecCCCCCcccc
Q 025335 10 ENEKMEECKETVVYMWGYLP-GTSPEKSP--ILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYL 86 (254)
Q Consensus 10 ~~~~~~vt~~G~vy~wG~n~-g~~~~~~~--~~~p~~v~~~~~~~i~~V~~~g~~hs~aLt~~G~vy~wG~n~~~GqLG~ 86 (254)
+=|++++++.|+||+||.+. |.++.+.. .+.|+.++.+.+.++.+|+. +..|+++||++|.||+||.| .++|||+
T Consensus 186 kfHSvfl~~kgqvY~cGhG~GGRlG~gdeq~~~iPkrV~gL~gh~~~qisv-s~~HslvLT~~g~Vys~GlN-~~hqLG~ 263 (1267)
T KOG0783|consen 186 KFHSVFLTEKGQVYVCGHGAGGRLGFGDEQYNFIPKRVPGLIGHKVIQISV-SHTHSLVLTKFGSVYSWGLN-GSHQLGL 263 (1267)
T ss_pred hceeeEecCCCcEEEeccCCCCccCcCcccccccccccccccccceEEEEe-ecceeEEEeecceEEEeecC-cccccCC
Confidence 34689999999999999987 56666544 45666688888889999998 67799999999999999999 8999999
Q ss_pred CCCC-CCCCcEEecCC---CCCceEEEEeCCCeEEEEEcCCcEEEEcCCCCCCCCC
Q 025335 87 TSGK-HGETPEPFPLP---TEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAK 138 (254)
Q Consensus 87 g~~~-~~~~p~~v~~~---~~~~i~~Ia~G~~hs~aLt~~G~vy~wG~n~~GQLG~ 138 (254)
.+.. ....|..|... .-..|+.||+|..|++|.+ +-.||+||.|. ||||.
T Consensus 264 ~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg~~hsVawt-~~~VY~wGlN~-GQlGi 317 (1267)
T KOG0783|consen 264 SNDELKKDDPIQITARRIKGFKQIIGVAAGKSHSVAWT-DTDVYSWGLNN-GQLGI 317 (1267)
T ss_pred cCchhhcCchhhhhhHhhcchhhhhhhhcccceeeeee-cceEEEecccC-ceecC
Confidence 7432 33344443221 2237999999999999999 45699999996 78883
No 7
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.73 E-value=2.2e-17 Score=158.00 Aligned_cols=76 Identities=25% Similarity=0.308 Sum_probs=70.1
Q ss_pred CCceEEEEeCCCeEEEEEcCCcEEEEcCCCCCCCCCCcCCCCCCCCcccCCCCCcCCCCCCCCCCCcccCCceeeeeeee
Q 025335 103 EASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKT 182 (254)
Q Consensus 103 ~~~i~~Ia~G~~hs~aLt~~G~vy~wG~n~~GQLG~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (254)
..++.+|+||..|+++|.+|++||++|+|..||||
T Consensus 766 dvkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG--------------------------------------------- 800 (3738)
T KOG1428|consen 766 DVKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLG--------------------------------------------- 800 (3738)
T ss_pred ceeEEEEeccCceEEEEecCCcEEEecCCcccccC---------------------------------------------
Confidence 44799999999999999999999999999999999
Q ss_pred eeccCCCCCCCCCCCcccccceEEeeCCCCcEEEEEecCCeEEEEecCCccc
Q 025335 183 SSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGKSLES 234 (254)
Q Consensus 183 ~~~~~~~~~~~~g~~~~~~~P~~v~~~~~~~I~~Ia~G~~hs~~Lt~~G~v~ 234 (254)
.||......|++|..+++..|+||++|.+||+++..||.|+
T Consensus 801 -----------~GDt~Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGsVF 841 (3738)
T KOG1428|consen 801 -----------VGDTLSKNTPQQVILPSDTVIVQVAAGSNHTILRANDGSVF 841 (3738)
T ss_pred -----------cCccccCCCcceEEcCCCCceEEEecCCCceEEEecCCcEE
Confidence 56666788999999999999999999999999999999754
No 8
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.70 E-value=4.1e-16 Score=149.53 Aligned_cols=90 Identities=23% Similarity=0.287 Sum_probs=84.2
Q ss_pred CCCceEEEecCCCeEEEEeCCCcEEEEecCCCCCccccCCCCCCCCcEEecCCCCCceEEEEeCCCeEEEEEcCCcEEEE
Q 025335 49 GDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTW 128 (254)
Q Consensus 49 ~~~i~~V~~~g~~hs~aLt~~G~vy~wG~n~~~GqLG~g~~~~~~~p~~v~~~~~~~i~~Ia~G~~hs~aLt~~G~vy~w 128 (254)
+.++.+|+| |..|++.|.+|++||++|.| .+||||.|+......|+.|..+.+..|++|++|.+|++++..||.||++
T Consensus 766 dvkv~sVSC-G~~HtVlL~sd~~VfTFG~~-~HGQLG~GDt~Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGsVFTF 843 (3738)
T KOG1428|consen 766 DVKVSSVSC-GNFHTVLLASDRRVFTFGSN-CHGQLGVGDTLSKNTPQQVILPSDTVIVQVAAGSNHTILRANDGSVFTF 843 (3738)
T ss_pred ceeEEEEec-cCceEEEEecCCcEEEecCC-cccccCcCccccCCCcceEEcCCCCceEEEecCCCceEEEecCCcEEEe
Confidence 456678888 77899999999999999999 7999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCc
Q 025335 129 GWRECVPSAKVT 140 (254)
Q Consensus 129 G~n~~GQLG~~~ 140 (254)
|.-..|||+|..
T Consensus 844 GaF~KGQL~RP~ 855 (3738)
T KOG1428|consen 844 GAFGKGQLARPA 855 (3738)
T ss_pred ccccCccccCcc
Confidence 999999999764
No 9
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.52 E-value=1.1e-14 Score=92.54 Aligned_cols=50 Identities=28% Similarity=0.508 Sum_probs=46.6
Q ss_pred CCcEEEEecCCCCCccc-cCCCCCCCCcEEecCCCCCceEEEEeCCCeEEEE
Q 025335 69 SGKLITWGSADDEGQSY-LTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSV 119 (254)
Q Consensus 69 ~G~vy~wG~n~~~GqLG-~g~~~~~~~p~~v~~~~~~~i~~Ia~G~~hs~aL 119 (254)
||+||+||.| .+|||| .+.......|+++..+...+|++|+||.+||+||
T Consensus 1 dG~vy~wG~n-~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSN-DYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEE-TTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECC-CCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 7999999999 799999 7778888899999999889999999999999997
No 10
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.44 E-value=1.4e-13 Score=87.41 Aligned_cols=31 Identities=39% Similarity=0.498 Sum_probs=28.3
Q ss_pred CcccccceEEeeCCCCcEEEEEecCCeEEEE
Q 025335 197 EFFTLSPCLVTLNPGVKITKVAAGGRHTLIL 227 (254)
Q Consensus 197 ~~~~~~P~~v~~~~~~~I~~Ia~G~~hs~~L 227 (254)
......|++|+.+.+.+|++|+||.+||+||
T Consensus 21 ~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 21 NKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp SSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 4478899999999999999999999999997
No 11
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.40 E-value=4.3e-13 Score=75.13 Aligned_cols=30 Identities=40% Similarity=0.615 Sum_probs=25.9
Q ss_pred eEEEEeCCCeEEEEEcCCcEEEEcCCCCCC
Q 025335 106 VVKAAAGWAHCVSVTEAGEVYTWGWRECVP 135 (254)
Q Consensus 106 i~~Ia~G~~hs~aLt~~G~vy~wG~n~~GQ 135 (254)
|++|+||.+|+++|+++|+||+||+|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999986
No 12
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=2.1e-13 Score=126.91 Aligned_cols=96 Identities=23% Similarity=0.305 Sum_probs=82.9
Q ss_pred ceeeeecCCCCceEEEecCCCeEEEEeCCCcEEEEecCCCCCccccCCCCCCCCcEEecCCCCCceEEEEeCCCeEEEEE
Q 025335 41 PIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVT 120 (254)
Q Consensus 41 p~~v~~~~~~~i~~V~~~g~~hs~aLt~~G~vy~wG~n~~~GqLG~g~~~~~~~p~~v~~~~~~~i~~Ia~G~~hs~aLt 120 (254)
|+.+.+...+++.++.| |..|++|++..|.+|+||.| .+||+|.+...+...|.+++.+.+.+..+|+||.+||++++
T Consensus 5 ~~~~~~l~~k~~lq~~c-Gn~hclal~~~g~~~~wg~~-~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS 82 (850)
T KOG0941|consen 5 PRLVLILNYKHILQVGC-GNNHCLALSCAGELFVWGMN-NNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALS 82 (850)
T ss_pred hHHHHHHhhhhhhhhcc-ccHHHHhhhccCCeeeccCC-ccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhh
Confidence 34444555667888888 77899999999999999999 79999999555455599999999999999999999998887
Q ss_pred c-------CCcEEEEcCCCCCCCCC
Q 025335 121 E-------AGEVYTWGWRECVPSAK 138 (254)
Q Consensus 121 ~-------~G~vy~wG~n~~GQLG~ 138 (254)
. +|.++++|....||+|+
T Consensus 83 ~~~~~lt~e~~~fs~Ga~~~~q~~h 107 (850)
T KOG0941|consen 83 SHTVLLTDEGKVFSFGAGSTGQLGH 107 (850)
T ss_pred hchhhcchhccccccCCcccccccc
Confidence 6 99999999999999984
No 13
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.08 E-value=1.7e-10 Score=64.53 Aligned_cols=30 Identities=23% Similarity=0.438 Sum_probs=24.7
Q ss_pred ceEEEecCCCeEEEEeCCCcEEEEecCCCCCc
Q 025335 52 WKDVCGGGCGFALATSESGKLITWGSADDEGQ 83 (254)
Q Consensus 52 i~~V~~~g~~hs~aLt~~G~vy~wG~n~~~Gq 83 (254)
|++|++ |..|+++|+++|+||+||.| .+||
T Consensus 1 V~~ia~-G~~ht~al~~~g~v~~wG~n-~~GQ 30 (30)
T PF13540_consen 1 VVQIAC-GGYHTCALTSDGEVYCWGDN-NYGQ 30 (30)
T ss_dssp EEEEEE-ESSEEEEEE-TTEEEEEE---TTST
T ss_pred CEEEEe-cCCEEEEEEcCCCEEEEcCC-cCCC
Confidence 578999 78999999999999999999 7998
No 14
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=2e-09 Score=100.85 Aligned_cols=127 Identities=17% Similarity=0.229 Sum_probs=102.8
Q ss_pred CCcCCcceEEEecCCcEEEccCCC-CCCCCCCC--cccceeeeecCCCCceEEEecCCCeEEEEeC-------CCcEEEE
Q 025335 6 SKREENEKMEECKETVVYMWGYLP-GTSPEKSP--ILSPIPARLCGGDSWKDVCGGGCGFALATSE-------SGKLITW 75 (254)
Q Consensus 6 ~~~~~~~~~~vt~~G~vy~wG~n~-g~~~~~~~--~~~p~~v~~~~~~~i~~V~~~g~~hs~aLt~-------~G~vy~w 75 (254)
.+|+..+.++++..|++|+||.|. |+++.... .-.|.+++.+.+.+..+|++ |.+|+++++. +|.++++
T Consensus 19 ~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~-g~~hs~~lS~~~~~lt~e~~~fs~ 97 (850)
T KOG0941|consen 19 VGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSA-GEAHSFALSSHTVLLTDEGKVFSF 97 (850)
T ss_pred hccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhc-CCCcchhhhhchhhcchhcccccc
Confidence 478889999999999999999886 66554422 22388888888888888888 5566666555 9999999
Q ss_pred ecCCCCCccccCCCCCCCCcEEecCCCCCceEEEEeCCCeEEEEE-cCCcEEEEcCCCCC
Q 025335 76 GSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVT-EAGEVYTWGWRECV 134 (254)
Q Consensus 76 G~n~~~GqLG~g~~~~~~~p~~v~~~~~~~i~~Ia~G~~hs~aLt-~~G~vy~wG~n~~G 134 (254)
|+. ..||+|+........|..+.-+-+..+.+|+||..|+.+.- +-|++|..|.+..|
T Consensus 98 Ga~-~~~q~~h~~~~~~~~~~~v~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sG 156 (850)
T KOG0941|consen 98 GAG-STGQLGHSLTENEVLPLLVLELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASG 156 (850)
T ss_pred CCc-ccccccccccccccccHHHHHHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCC
Confidence 999 89999997666666777777767889999999999999874 57999999998875
No 15
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=90.16 E-value=6.8 Score=36.80 Aligned_cols=108 Identities=15% Similarity=0.180 Sum_probs=64.9
Q ss_pred CcCCcceEEEecCCcEEEccCCCCCCCCCCCcccceeeee-cCCCCceEEEecCC-CeEEEEeCCCcEE-EEecCCCCCc
Q 025335 7 KREENEKMEECKETVVYMWGYLPGTSPEKSPILSPIPARL-CGGDSWKDVCGGGC-GFALATSESGKLI-TWGSADDEGQ 83 (254)
Q Consensus 7 ~~~~~~~~~vt~~G~vy~wG~n~g~~~~~~~~~~p~~v~~-~~~~~i~~V~~~g~-~hs~aLt~~G~vy-~wG~n~~~Gq 83 (254)
+.+++...++..+|++|.== |..... + .-+..+. .....+.+|++ |. +-..||+.+|.|| --|-- ++-+
T Consensus 189 ~~g~~~awAI~s~Gd~y~Rt---Gvs~~~-P--~GraW~~i~~~t~L~qISa-gPtg~VwAvt~nG~vf~R~GVs-RqNp 260 (705)
T KOG3669|consen 189 GLGDDTAWAIRSSGDLYLRT---GVSVDR-P--CGRAWKVICPYTDLSQISA-GPTGVVWAVTENGAVFYREGVS-RQNP 260 (705)
T ss_pred CCCceEEEEEecCCcEEEec---cccCCC-C--CCceeeecCCCCccceEee-cCcceEEEEeeCCcEEEEeccc-ccCC
Confidence 45566678888888888631 111110 0 0011111 11224567777 55 5889999999986 45655 4555
Q ss_pred cccCCCCCCCCcEEecCCCCCceEEEEeCCCeEEEEEcCCcEEEE
Q 025335 84 SYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTW 128 (254)
Q Consensus 84 LG~g~~~~~~~p~~v~~~~~~~i~~Ia~G~~hs~aLt~~G~vy~w 128 (254)
.|.. -++. ++|.... .++.|+.|..-.-|||.+|++|.=
T Consensus 261 ~Gds-WkdI--~tP~~a~---~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 261 EGDS-WKDI--VTPRQAL---EPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred CCch-hhhc--cCccccc---ceEEEEeccceEEEEecCCcEEEE
Confidence 5432 1222 3333332 299999999999999999999864
No 16
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=83.13 E-value=2.6 Score=23.66 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=22.0
Q ss_pred CceEEEEeCC-CeEEEEEcCCcEEEE
Q 025335 104 ASVVKAAAGW-AHCVSVTEAGEVYTW 128 (254)
Q Consensus 104 ~~i~~Ia~G~-~hs~aLt~~G~vy~w 128 (254)
..+++|++|. +.--+++.+|++|..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 4699999999 889999999999864
No 17
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=80.38 E-value=8 Score=33.21 Aligned_cols=107 Identities=12% Similarity=0.104 Sum_probs=64.5
Q ss_pred ceEEEecCCcEEEccCCCCCCCCCCCcccceeeeecCCCCceEEEe-cCCC-eEEEEeCCCcEEEEecCCCCCccccCCC
Q 025335 12 EKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCG-GGCG-FALATSESGKLITWGSADDEGQSYLTSG 89 (254)
Q Consensus 12 ~~~~vt~~G~vy~wG~n~g~~~~~~~~~~p~~v~~~~~~~i~~V~~-~g~~-hs~aLt~~G~vy~wG~n~~~GqLG~g~~ 89 (254)
+.++...||.||.=+...+..++-.+..- +++.+.. .|.. |.+.+..||..|.+-.....+.++-.
T Consensus 65 ~dvapapdG~VWft~qg~gaiGhLdP~tG----------ev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpk-- 132 (353)
T COG4257 65 FDVAPAPDGAVWFTAQGTGAIGHLDPATG----------EVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPK-- 132 (353)
T ss_pred cccccCCCCceEEecCccccceecCCCCC----------ceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCc--
Confidence 36888999999998887766665433211 1122222 0333 99999999999988544112222211
Q ss_pred CCCCCcEEecCCCCCceEEEEeCCCeEEEEEcCCcEEEEcCCCCCCCCCC
Q 025335 90 KHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKV 139 (254)
Q Consensus 90 ~~~~~p~~v~~~~~~~i~~Ia~G~~hs~aLt~~G~vy~wG~n~~GQLG~~ 139 (254)
....+...++ .+-+-+.--+++++..|+||.-|.+-+. |+|
T Consensus 133 --t~evt~f~lp-----~~~a~~nlet~vfD~~G~lWFt~q~G~y--GrL 173 (353)
T COG4257 133 --TLEVTRFPLP-----LEHADANLETAVFDPWGNLWFTGQIGAY--GRL 173 (353)
T ss_pred --ccceEEeecc-----cccCCCcccceeeCCCccEEEeeccccc--eec
Confidence 1122223332 2223455678899999999999986654 555
No 18
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=78.94 E-value=3.3 Score=34.22 Aligned_cols=29 Identities=17% Similarity=0.377 Sum_probs=25.2
Q ss_pred CCceEEEEeCCCeEEEEEcCCcEEEEcCC
Q 025335 103 EASVVKAAAGWAHCVSVTEAGEVYTWGWR 131 (254)
Q Consensus 103 ~~~i~~Ia~G~~hs~aLt~~G~vy~wG~n 131 (254)
+.+++.+.|-..+-+|||++|.+|+|=-.
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~ 40 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNLK 40 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEECC
Confidence 46788899999999999999999999433
No 19
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=78.78 E-value=7.3 Score=32.18 Aligned_cols=70 Identities=10% Similarity=0.228 Sum_probs=37.4
Q ss_pred CCcceEEEecCCcEEEccCCCCCCCCCCCcccceeee--e---cCCCCceEEEecCCCeEEEEeCCCcEEEEecC
Q 025335 9 EENEKMEECKETVVYMWGYLPGTSPEKSPILSPIPAR--L---CGGDSWKDVCGGGCGFALATSESGKLITWGSA 78 (254)
Q Consensus 9 ~~~~~~~vt~~G~vy~wG~n~g~~~~~~~~~~p~~v~--~---~~~~~i~~V~~~g~~hs~aLt~~G~vy~wG~n 78 (254)
.....|+||++|.+|+|=...+..........|..-. . .....|+.+.-...+.-++...+|+.|+|=.+
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~ 95 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD 95 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence 3445899999999999986653332222111111000 0 12233444333234466666677888888554
No 20
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=76.90 E-value=2.7 Score=24.36 Aligned_cols=19 Identities=21% Similarity=0.588 Sum_probs=16.5
Q ss_pred CeEEEEEcCCcEEEEcCCC
Q 025335 114 AHCVSVTEAGEVYTWGWRE 132 (254)
Q Consensus 114 ~hs~aLt~~G~vy~wG~n~ 132 (254)
-+.+++|.+|++|+-|.-.
T Consensus 15 ~~~IavD~~GNiYv~G~T~ 33 (38)
T PF06739_consen 15 GNGIAVDSNGNIYVTGYTN 33 (38)
T ss_pred EEEEEECCCCCEEEEEeec
Confidence 4789999999999999765
No 21
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=74.26 E-value=5.4 Score=40.85 Aligned_cols=79 Identities=22% Similarity=0.268 Sum_probs=51.7
Q ss_pred CCCceEEEecCCC--eEEEEeCCCcEEEEecCCCCCccccC--CCCCCCCcEE-ecCCCCCceEEEEeCCCeEEEEEcCC
Q 025335 49 GDSWKDVCGGGCG--FALATSESGKLITWGSADDEGQSYLT--SGKHGETPEP-FPLPTEASVVKAAAGWAHCVSVTEAG 123 (254)
Q Consensus 49 ~~~i~~V~~~g~~--hs~aLt~~G~vy~wG~n~~~GqLG~g--~~~~~~~p~~-v~~~~~~~i~~Ia~G~~hs~aLt~~G 123 (254)
+.+..++.|||.- -.+||..+|++|.|-+.++.|- -.. ..+...-|.. ..-+.+.+|+..++..-..-++|++|
T Consensus 370 Dddan~~I~I~A~s~el~AlhrkGelYqWaWdESEgl-ddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~ng 448 (3015)
T KOG0943|consen 370 DDDANKFICIGALSSELLALHRKGELYQWAWDESEGL-DDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENG 448 (3015)
T ss_pred CCCCCeeEEeehhHHHHHHHhhCCceeeeecccccCC-CChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCC
Confidence 3444455555655 5788999999999998743221 110 0111111222 22234789999999999999999999
Q ss_pred cEEEE
Q 025335 124 EVYTW 128 (254)
Q Consensus 124 ~vy~w 128 (254)
+|-+|
T Consensus 449 hlasW 453 (3015)
T KOG0943|consen 449 HLASW 453 (3015)
T ss_pred chhhH
Confidence 99999
No 22
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=67.20 E-value=17 Score=19.37 Aligned_cols=25 Identities=24% Similarity=0.241 Sum_probs=20.9
Q ss_pred CceEEEEeCCCeEEEEEcCCcEEEE
Q 025335 104 ASVVKAAAGWAHCVSVTEAGEVYTW 128 (254)
Q Consensus 104 ~~i~~Ia~G~~hs~aLt~~G~vy~w 128 (254)
+.|..|++|....++.|+.+-|-.|
T Consensus 2 E~i~aia~g~~~vavaTS~~~lRif 26 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLRIF 26 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEEec
Confidence 5789999999999999988876543
No 23
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=64.67 E-value=11 Score=38.72 Aligned_cols=32 Identities=22% Similarity=0.533 Sum_probs=28.7
Q ss_pred CCCceEEEEeCCCeEEEEEcCCcEEEEcCCCC
Q 025335 102 TEASVVKAAAGWAHCVSVTEAGEVYTWGWREC 133 (254)
Q Consensus 102 ~~~~i~~Ia~G~~hs~aLt~~G~vy~wG~n~~ 133 (254)
...+++.|.+=++..+||..+|++|.|-|.+.
T Consensus 372 dan~~I~I~A~s~el~AlhrkGelYqWaWdES 403 (3015)
T KOG0943|consen 372 DANKFICIGALSSELLALHRKGELYQWAWDES 403 (3015)
T ss_pred CCCeeEEeehhHHHHHHHhhCCceeeeecccc
Confidence 35689999999999999999999999999886
No 24
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=63.05 E-value=82 Score=29.95 Aligned_cols=71 Identities=18% Similarity=0.150 Sum_probs=49.0
Q ss_pred ceEEEEeCC-CeEEEEEcCCcEEE-EcCCCCCCCCCCcCCCCCCCCcccCCCCCcCCCCCCCCCCCcccCCceeeeeeee
Q 025335 105 SVVKAAAGW-AHCVSVTEAGEVYT-WGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKT 182 (254)
Q Consensus 105 ~i~~Ia~G~-~hs~aLt~~G~vy~-wG~n~~GQLG~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (254)
++.+|++|. .-..||+++|.||- -|-....+.| .++
T Consensus 228 ~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~G---------dsW--------------------------------- 265 (705)
T KOG3669|consen 228 DLSQISAGPTGVVWAVTENGAVFYREGVSRQNPEG---------DSW--------------------------------- 265 (705)
T ss_pred ccceEeecCcceEEEEeeCCcEEEEecccccCCCC---------chh---------------------------------
Confidence 699999999 77889999999764 4555544333 000
Q ss_pred eeccCCCCCCCCCCCcccccceEEeeCCCCcEEEEEecCCeEEEEecCCcccccC
Q 025335 183 SSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGKSLESAEP 237 (254)
Q Consensus 183 ~~~~~~~~~~~~g~~~~~~~P~~v~~~~~~~I~~Ia~G~~hs~~Lt~~G~v~~~~ 237 (254)
..+..|+... .++.|+.|..-.-+||.+|++....
T Consensus 266 ---------------kdI~tP~~a~-----~~v~iSvGt~t~Waldndg~lwfrr 300 (705)
T KOG3669|consen 266 ---------------KDIVTPRQAL-----EPVCISVGTQTLWALDNDGNLWFRR 300 (705)
T ss_pred ---------------hhccCccccc-----ceEEEEeccceEEEEecCCcEEEEe
Confidence 0233343222 3899999999999999999876643
No 25
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=62.31 E-value=54 Score=28.37 Aligned_cols=97 Identities=15% Similarity=0.079 Sum_probs=54.4
Q ss_pred ceEEEecCCcEEEccCCC--CCCCCCCCcccceeeeecCCCCceEEEecCCCeEEEEeCCCcEEEEecCCCCCccccCCC
Q 025335 12 EKMEECKETVVYMWGYLP--GTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSG 89 (254)
Q Consensus 12 ~~~~vt~~G~vy~wG~n~--g~~~~~~~~~~p~~v~~~~~~~i~~V~~~g~~hs~aLt~~G~vy~wG~n~~~GqLG~g~~ 89 (254)
|.+++..||..|.+-... +.++......+..++... -.- +.--+..++..|+||.-|.+..+|.|--...
T Consensus 107 hgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~~-------~a~-~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~ 178 (353)
T COG4257 107 HGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPLE-------HAD-ANLETAVFDPWGNLWFTGQIGAYGRLDPARN 178 (353)
T ss_pred ceEEECCCCCeeEecCcceeEEecCcccceEEeecccc-------cCC-CcccceeeCCCccEEEeeccccceecCcccC
Confidence 367888888888886543 222222222222222211 111 2227889999999999998645676632211
Q ss_pred CCCCCcEEecCCCCCceEEEEeCCCeEEEEEcCCcEEEE
Q 025335 90 KHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTW 128 (254)
Q Consensus 90 ~~~~~p~~v~~~~~~~i~~Ia~G~~hs~aLt~~G~vy~w 128 (254)
.. +....+++ +.-.-++.|-+|+||.-
T Consensus 179 ~i----~vfpaPqG--------~gpyGi~atpdGsvwya 205 (353)
T COG4257 179 VI----SVFPAPQG--------GGPYGICATPDGSVWYA 205 (353)
T ss_pred ce----eeeccCCC--------CCCcceEECCCCcEEEE
Confidence 11 11222222 44567788999999976
No 26
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=60.75 E-value=9.4 Score=22.86 Aligned_cols=17 Identities=18% Similarity=0.565 Sum_probs=12.2
Q ss_pred CCeEEEEEcCCcEEEEc
Q 025335 113 WAHCVSVTEAGEVYTWG 129 (254)
Q Consensus 113 ~~hs~aLt~~G~vy~wG 129 (254)
..|+++...++++|.+|
T Consensus 3 ~~h~~~~~~~~~i~v~G 19 (49)
T PF13418_consen 3 YGHSAVSIGDNSIYVFG 19 (49)
T ss_dssp BS-EEEEE-TTEEEEE-
T ss_pred ceEEEEEEeCCeEEEEC
Confidence 46899988889999998
No 27
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=55.31 E-value=39 Score=29.78 Aligned_cols=57 Identities=18% Similarity=0.324 Sum_probs=39.8
Q ss_pred EEEeCCCcEEEEecCCCCCccccCCCCCCCCcEEecCCCCCceEEEEeCCCeE--EEEEcCCcEEEEc
Q 025335 64 LATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHC--VSVTEAGEVYTWG 129 (254)
Q Consensus 64 ~aLt~~G~vy~wG~n~~~GqLG~g~~~~~~~p~~v~~~~~~~i~~Ia~G~~hs--~aLt~~G~vy~wG 129 (254)
++..+.|+||.|-... ..+...++......+..|.|.+-..+-+ ++++++|.||-|-
T Consensus 323 a~gnq~g~v~vwdL~~---------~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDN---------NEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred hhccCCCcEEEEECCC---------CCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 3456779999997652 2233557777777788888887765554 4557888898884
No 28
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=54.56 E-value=1.2e+02 Score=32.69 Aligned_cols=66 Identities=17% Similarity=0.218 Sum_probs=44.0
Q ss_pred CCCceEEEecCCCeEEEEeCCCcEEEEecCCCCCccccCCCCCCCCcEEecCCC-CCceEEEEeCCCeE-EEEEcCCcEE
Q 025335 49 GDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPT-EASVVKAAAGWAHC-VSVTEAGEVY 126 (254)
Q Consensus 49 ~~~i~~V~~~g~~hs~aLt~~G~vy~wG~n~~~GqLG~g~~~~~~~p~~v~~~~-~~~i~~Ia~G~~hs-~aLt~~G~vy 126 (254)
+..|+-++.++..+-++|+++|++-+.= . .| .|.++.... .-.|++|++=..|. .||+.+|++|
T Consensus 702 ~~~i~a~Avv~~~~fvald~qg~lt~h~-k--~g-----------~p~~l~~~gl~G~ik~l~lD~~~nL~Alt~~G~Lf 767 (1774)
T PF11725_consen 702 DRVITAFAVVNDNKFVALDDQGDLTAHQ-K--PG-----------RPVPLSRPGLSGEIKDLALDEKQNLYALTSTGELF 767 (1774)
T ss_pred cCcceeEEEEcCCceEEeccCCcccccc-C--CC-----------CCccCCCCCCCcchhheeeccccceeEecCCCcee
Confidence 5567777777778999999999885443 1 01 144332221 34788888887754 5788889988
Q ss_pred EE
Q 025335 127 TW 128 (254)
Q Consensus 127 ~w 128 (254)
.-
T Consensus 768 ~~ 769 (1774)
T PF11725_consen 768 RL 769 (1774)
T ss_pred ec
Confidence 65
No 29
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=53.48 E-value=1.5e+02 Score=25.61 Aligned_cols=65 Identities=26% Similarity=0.350 Sum_probs=33.5
Q ss_pred CCeEEEEeCCCcEEEEec-CCCCCccccCCCCCCCCcEEecCCCCCceEEEE--eCCCeEEEEEcCCcEEEEcC
Q 025335 60 CGFALATSESGKLITWGS-ADDEGQSYLTSGKHGETPEPFPLPTEASVVKAA--AGWAHCVSVTEAGEVYTWGW 130 (254)
Q Consensus 60 ~~hs~aLt~~G~vy~wG~-n~~~GqLG~g~~~~~~~p~~v~~~~~~~i~~Ia--~G~~hs~aLt~~G~vy~wG~ 130 (254)
.+|+++. -++++|.||. ||+.|.+-.-. ...|+--.-. ...|.... +-.-||+++- .+.+|.+|-
T Consensus 80 YGHtvV~-y~d~~yvWGGRND~egaCN~Ly---~fDp~t~~W~-~p~v~G~vPgaRDGHsAcV~-gn~MyiFGG 147 (392)
T KOG4693|consen 80 YGHTVVE-YQDKAYVWGGRNDDEGACNLLY---EFDPETNVWK-KPEVEGFVPGARDGHSACVW-GNQMYIFGG 147 (392)
T ss_pred cCceEEE-EcceEEEEcCccCcccccceee---eecccccccc-ccceeeecCCccCCceeeEE-CcEEEEecC
Confidence 3498765 4569999986 53456553221 1111111000 01122221 3356888877 567899874
No 30
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=53.47 E-value=98 Score=25.40 Aligned_cols=108 Identities=17% Similarity=0.191 Sum_probs=48.4
Q ss_pred eEEEecCCcEEEccCCCCCCCCCCCcccceeeeecCCCCceEEEe-cCCCeEEEEeCCCc-EEEEecCCCCCccccCCCC
Q 025335 13 KMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCG-GGCGFALATSESGK-LITWGSADDEGQSYLTSGK 90 (254)
Q Consensus 13 ~~~vt~~G~vy~wG~n~g~~~~~~~~~~p~~v~~~~~~~i~~V~~-~g~~hs~aLt~~G~-vy~wG~n~~~GqLG~g~~~ 90 (254)
-++++.+|.+|.=-.+......... .....+..+.+++.+.. ...-..++++.+|+ ||.--.. .+++-.-...
T Consensus 90 D~~vd~~G~ly~t~~~~~~~~~~~~---g~v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~--~~~i~~~~~~ 164 (246)
T PF08450_consen 90 DVAVDPDGNLYVTDSGGGGASGIDP---GSVYRIDPDGKVTVVADGLGFPNGIAFSPDGKTLYVADSF--NGRIWRFDLD 164 (246)
T ss_dssp EEEE-TTS-EEEEEECCBCTTCGGS---EEEEEEETTSEEEEEEEEESSEEEEEEETTSSEEEEEETT--TTEEEEEEEE
T ss_pred eEEEcCCCCEEEEecCCCccccccc---cceEEECCCCeEEEEecCcccccceEECCcchheeecccc--cceeEEEecc
Confidence 5788899998886654322221111 23333333333333333 22226888998886 5543333 2322111000
Q ss_pred -CCCCcEEecCCCCCceEEEEe--CCCeEEEEEcCCcEEEEcC
Q 025335 91 -HGETPEPFPLPTEASVVKAAA--GWAHCVSVTEAGEVYTWGW 130 (254)
Q Consensus 91 -~~~~p~~v~~~~~~~i~~Ia~--G~~hs~aLt~~G~vy~wG~ 130 (254)
....... ...+.++.- |.--.++++.+|+||+.-+
T Consensus 165 ~~~~~~~~-----~~~~~~~~~~~g~pDG~~vD~~G~l~va~~ 202 (246)
T PF08450_consen 165 ADGGELSN-----RRVFIDFPGGPGYPDGLAVDSDGNLWVADW 202 (246)
T ss_dssp TTTCCEEE-----EEEEEE-SSSSCEEEEEEEBTTS-EEEEEE
T ss_pred ccccceee-----eeeEEEcCCCCcCCCcceEcCCCCEEEEEc
Confidence 0000000 001122222 3467899999999999844
No 31
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=52.44 E-value=45 Score=29.35 Aligned_cols=57 Identities=14% Similarity=0.280 Sum_probs=38.3
Q ss_pred EecCCcEEEccCCCCCCCCCCCcccceeeeecCCCCceEEEecCCC-eEEEEeCCCcEEEEec
Q 025335 16 ECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCG-FALATSESGKLITWGS 77 (254)
Q Consensus 16 vt~~G~vy~wG~n~g~~~~~~~~~~p~~v~~~~~~~i~~V~~~g~~-hs~aLt~~G~vy~wG~ 77 (254)
....|+||+|-..+. .+...++.........|++.+..-++ .-++++++|-||.|-.
T Consensus 325 gnq~g~v~vwdL~~~-----ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 325 GNQSGKVYVWDLDNN-----EPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred ccCCCcEEEEECCCC-----CCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 467889999985322 22244555555666777877763333 7788899999999953
No 32
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.87 E-value=80 Score=32.91 Aligned_cols=64 Identities=13% Similarity=0.097 Sum_probs=38.5
Q ss_pred eEEEecCCcEEEccCCCCCCCCCCCcccce--eeeecCCCCceEEEecCCCeEEEEeCCCcEEEEecC
Q 025335 13 KMEECKETVVYMWGYLPGTSPEKSPILSPI--PARLCGGDSWKDVCGGGCGFALATSESGKLITWGSA 78 (254)
Q Consensus 13 ~~~vt~~G~vy~wG~n~g~~~~~~~~~~p~--~v~~~~~~~i~~V~~~g~~hs~aLt~~G~vy~wG~n 78 (254)
-+=+|.|.++|.|-++++..-..-.....+ .|.+...+.-+-|..+ .|.++|..-=+|+..|--
T Consensus 92 RaWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~I--qhlLvvaT~~ei~ilgV~ 157 (1311)
T KOG1900|consen 92 RAWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEI--QHLLVVATPVEIVILGVS 157 (1311)
T ss_pred ceEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhh--heeEEecccceEEEEEEE
Confidence 355799999999999873222211112222 2223333333334433 499999999999999865
No 33
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=46.10 E-value=3.2e+02 Score=27.38 Aligned_cols=115 Identities=8% Similarity=0.030 Sum_probs=59.7
Q ss_pred CcceEEEecCCcEEEccCCC----CCCCCCCCcccceeeeecCCCCceEEEecC---C-CeEEEEeCCCcEEEEecCCCC
Q 025335 10 ENEKMEECKETVVYMWGYLP----GTSPEKSPILSPIPARLCGGDSWKDVCGGG---C-GFALATSESGKLITWGSADDE 81 (254)
Q Consensus 10 ~~~~~~vt~~G~vy~wG~n~----g~~~~~~~~~~p~~v~~~~~~~i~~V~~~g---~-~hs~aLt~~G~vy~wG~n~~~ 81 (254)
.+..+++|+.|++|..=... +....+.+.. ..+++..+.+|..+.++. . ...+++|.+|.+.-.=.+ .+
T Consensus 546 ~d~LllfTs~Grv~~l~~~~IP~~~r~~~G~~i~--~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~-~~ 622 (800)
T TIGR01063 546 HDYLLFFTNRGKVYWLKVYQIPEASRTAKGKPIV--NLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLT-EF 622 (800)
T ss_pred CCeEEEEeCCCcEEEEEhhhCcCCCcCCCCcCHH--HhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhH-Hh
Confidence 34478899999999993221 1122222221 112344455565544421 1 157888999988766444 12
Q ss_pred CccccCCCCCCCCcEEecCCCCCceEEEE--eCCCeEEEEEcCCcEEEEcCCCC
Q 025335 82 GQSYLTSGKHGETPEPFPLPTEASVVKAA--AGWAHCVSVTEAGEVYTWGWREC 133 (254)
Q Consensus 82 GqLG~g~~~~~~~p~~v~~~~~~~i~~Ia--~G~~hs~aLt~~G~vy~wG~n~~ 133 (254)
-.... .--..+.+..+..++.+. ...++.+++|++|++|.+-..+-
T Consensus 623 ~~~~r------~G~~aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eI 670 (800)
T TIGR01063 623 SNIRS------NGIIAIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDV 670 (800)
T ss_pred hhhcc------CCcccccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhc
Confidence 11000 000011222233444433 33456889999999999865554
No 34
>PLN02153 epithiospecifier protein
Probab=45.12 E-value=2.1e+02 Score=24.92 Aligned_cols=18 Identities=22% Similarity=0.338 Sum_probs=13.1
Q ss_pred CCeEEEEEcCCcEEEEcCC
Q 025335 113 WAHCVSVTEAGEVYTWGWR 131 (254)
Q Consensus 113 ~~hs~aLt~~G~vy~wG~n 131 (254)
..|++++. ++++|++|=-
T Consensus 129 ~~~~~~~~-~~~iyv~GG~ 146 (341)
T PLN02153 129 TFHSMASD-ENHVYVFGGV 146 (341)
T ss_pred eeeEEEEE-CCEEEEECCc
Confidence 36777665 6899999753
No 35
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=44.42 E-value=2e+02 Score=24.54 Aligned_cols=58 Identities=17% Similarity=0.354 Sum_probs=36.3
Q ss_pred eEEEEeCCCcEEEEecCCCCCccccCCCCCCCCcEEecCCCCCceEEEEeCCCeE--EEEEcCCcEEEEcCC
Q 025335 62 FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHC--VSVTEAGEVYTWGWR 131 (254)
Q Consensus 62 hs~aLt~~G~vy~wG~n~~~GqLG~g~~~~~~~p~~v~~~~~~~i~~Ia~G~~hs--~aLt~~G~vy~wG~n 131 (254)
|-+.-+.+|+|+.|-..+ . + -.....|.. ...|.+++...+-+ +|.++.|++|+|-.-
T Consensus 138 eLis~dqsg~irvWDl~~-~-~-----c~~~liPe~-----~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~ 197 (311)
T KOG0315|consen 138 ELISGDQSGNIRVWDLGE-N-S-----CTHELIPED-----DTSIQSLTVMPDGSMLAAANNKGNCYVWRLL 197 (311)
T ss_pred eEEeecCCCcEEEEEccC-C-c-----cccccCCCC-----CcceeeEEEcCCCcEEEEecCCccEEEEEcc
Confidence 677778889999996552 1 0 112222221 24577777766554 456889999999543
No 36
>PF13938 DUF4213: Domain of unknown function (DUF4213); PDB: 3NPG_A 3L5O_B.
Probab=42.34 E-value=27 Score=24.08 Aligned_cols=24 Identities=17% Similarity=0.255 Sum_probs=19.6
Q ss_pred CCCCcEEEEEecCCeEEEEecCCc
Q 025335 209 NPGVKITKVAAGGRHTLILSGKSL 232 (254)
Q Consensus 209 ~~~~~I~~Ia~G~~hs~~Lt~~G~ 232 (254)
.++.+|.++..|..+|++.+++|.
T Consensus 9 ~~~~~V~~~~iG~~~t~V~~~~G~ 32 (87)
T PF13938_consen 9 APDIRVEDVCIGLHWTAVELSDGG 32 (87)
T ss_dssp CGC-EEEEEEEBSSEEEEEETT-E
T ss_pred CCCCEEEEEEEcCCEEEEEeCCCc
Confidence 346799999999999999999974
No 37
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=42.26 E-value=49 Score=17.35 Aligned_cols=18 Identities=28% Similarity=0.433 Sum_probs=14.1
Q ss_pred eEEEEEcCCcEEEEcCCC
Q 025335 115 HCVSVTEAGEVYTWGWRE 132 (254)
Q Consensus 115 hs~aLt~~G~vy~wG~n~ 132 (254)
|.++++.+|++|+.=.+.
T Consensus 5 ~gvav~~~g~i~VaD~~n 22 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGN 22 (28)
T ss_dssp EEEEEETTSEEEEEECCC
T ss_pred cEEEEeCCCCEEEEECCC
Confidence 678899999999875443
No 38
>PF13854 Kelch_5: Kelch motif
Probab=39.85 E-value=35 Score=19.80 Aligned_cols=16 Identities=25% Similarity=0.740 Sum_probs=12.7
Q ss_pred CCeEEEEEcCCcEEEEc
Q 025335 113 WAHCVSVTEAGEVYTWG 129 (254)
Q Consensus 113 ~~hs~aLt~~G~vy~wG 129 (254)
..|++++. ++++|.+|
T Consensus 6 ~~hs~~~~-~~~iyi~G 21 (42)
T PF13854_consen 6 YGHSAVVV-GNNIYIFG 21 (42)
T ss_pred cceEEEEE-CCEEEEEc
Confidence 45777776 59999998
No 39
>PF13964 Kelch_6: Kelch motif
Probab=39.30 E-value=31 Score=20.63 Aligned_cols=19 Identities=26% Similarity=0.693 Sum_probs=13.2
Q ss_pred CCeEEEEEcCCcEEEEcCCC
Q 025335 113 WAHCVSVTEAGEVYTWGWRE 132 (254)
Q Consensus 113 ~~hs~aLt~~G~vy~wG~n~ 132 (254)
..|+++.. +++||++|=..
T Consensus 3 ~~~s~v~~-~~~iyv~GG~~ 21 (50)
T PF13964_consen 3 YGHSAVVV-GGKIYVFGGYD 21 (50)
T ss_pred ccCEEEEE-CCEEEEECCCC
Confidence 35666554 78999998443
No 40
>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family plays essential roles in patterning and differentiation during vertebrate embryogenesis, and has neurotrophic activities. FGFs have a high affinity for heparan sulfate proteoglycans and require heparan sulfate to activate one of four cell surface FGF receptors. Upon binding to FGF, the receptors dimerize and their intracellular tyrosine kinase domains become active. FGFs have internal pseudo-threefold symmetry (beta-trefoil topology).
Probab=38.51 E-value=1.6e+02 Score=21.77 Aligned_cols=58 Identities=14% Similarity=0.023 Sum_probs=31.4
Q ss_pred cceEEEecCCcEEEccCCCCCCCCCCCcccceeeeecCCCCceEEEecCCCeEEEEeCCCcEEEEe
Q 025335 11 NEKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWG 76 (254)
Q Consensus 11 ~~~~~vt~~G~vy~wG~n~g~~~~~~~~~~p~~v~~~~~~~i~~V~~~g~~hs~aLt~~G~vy~wG 76 (254)
+..|.+..||.|-. ........ .-..+... ...++.|..+....-+|+++.|+||+--
T Consensus 8 ~~~L~I~~dG~V~G------t~~~~~~~-s~l~~~s~-~~g~v~i~~v~s~~YLCmn~~G~ly~s~ 65 (123)
T cd00058 8 GFHLQILPDGTVDG------TRDDSSSY-TILERIAV-AVGVVSIKGVASCRYLCMNKCGKLYGSK 65 (123)
T ss_pred CeEEEEcCCCcEec------ccCCCCCC-ceEEEEEC-CCCEEEEEEcccceEEEECCCCCEEECC
Confidence 55788888998732 22222111 11111111 2333444443345788999999999754
No 41
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=38.46 E-value=53 Score=22.57 Aligned_cols=32 Identities=9% Similarity=0.181 Sum_probs=25.2
Q ss_pred CCceEEEEeC-CCeEEEEEcCCcEEEEcCCCCC
Q 025335 103 EASVVKAAAG-WAHCVSVTEAGEVYTWGWRECV 134 (254)
Q Consensus 103 ~~~i~~Ia~G-~~hs~aLt~~G~vy~wG~n~~G 134 (254)
+..=..|+|. ..-.++|+.||.+|.-+--+.|
T Consensus 15 ~~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG 47 (81)
T PF03785_consen 15 GQTSISVSCDVPGSYVALSQDGDLYGKAIVNSG 47 (81)
T ss_dssp T-SEEEEEESSTT-EEEEEETTEEEEEEE-BTT
T ss_pred cccEEEEEecCCCcEEEEecCCEEEEEEEecCc
Confidence 5667889999 8889999999999999877753
No 42
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=38.31 E-value=82 Score=26.30 Aligned_cols=64 Identities=9% Similarity=0.033 Sum_probs=38.5
Q ss_pred CCCeEEEEeCCCcEEEEecCCCCCccccCCCCCCCCcEEecCCCCCceEEEEeCCC--eEEEEEcCCcEEEEcCCCC
Q 025335 59 GCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWA--HCVSVTEAGEVYTWGWREC 133 (254)
Q Consensus 59 g~~hs~aLt~~G~vy~wG~n~~~GqLG~g~~~~~~~p~~v~~~~~~~i~~Ia~G~~--hs~aLt~~G~vy~wG~n~~ 133 (254)
+..-.++.+.+|.||+|-.| .+|++-. .+......-..-|+.|.. -.++-..+|+++.|=---+
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n-~~g~~~d----------~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~ 134 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWN-LEGAHSD----------RVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN 134 (238)
T ss_pred cCceEEeecccceEEEecCC-ccchHHH----------hhhcccccceeccccccccceeEEeccCCceeeeccccC
Confidence 34577888999999999999 6887621 111111222334445555 3333446888998854443
No 43
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=36.97 E-value=1.7e+02 Score=31.64 Aligned_cols=73 Identities=15% Similarity=0.080 Sum_probs=48.2
Q ss_pred CCCceEEEecCCCeEEEEeCCCcEEEEecCCCCCccccCCCCCCCCcEEecCCCCCceEEEEeCCCeEEEEEcCC
Q 025335 49 GDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAG 123 (254)
Q Consensus 49 ~~~i~~V~~~g~~hs~aLt~~G~vy~wG~n~~~GqLG~g~~~~~~~p~~v~~~~~~~i~~Ia~G~~hs~aLt~~G 123 (254)
...|+.++.--...-.|+|.+|+||.-=.- .-|-+-.........++|.++.+.+|..+....+|.+.+.-++
T Consensus 743 ~G~ik~l~lD~~~nL~Alt~~G~Lf~~~k~--~WQ~~~~~~~~~~~W~~v~lP~~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 743 SGEIKDLALDEKQNLYALTSTGELFRLPKE--AWQGNAEGDQMAAKWQKVALPDEQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred CcchhheeeccccceeEecCCCceeecCHH--HhhCcccCCccccCceeccCCCCCchhhhhcCCCCceEEEecC
Confidence 356788887322246679999999964322 0111111112335577888888999999999999999987665
No 44
>PRK05560 DNA gyrase subunit A; Validated
Probab=36.45 E-value=4.6e+02 Score=26.35 Aligned_cols=114 Identities=10% Similarity=0.057 Sum_probs=60.6
Q ss_pred cceEEEecCCcEEEccCCC----CCCCCCCCcccceeeeecCCCCceEEEecC---C-CeEEEEeCCCcEEEEecCCCCC
Q 025335 11 NEKMEECKETVVYMWGYLP----GTSPEKSPILSPIPARLCGGDSWKDVCGGG---C-GFALATSESGKLITWGSADDEG 82 (254)
Q Consensus 11 ~~~~~vt~~G~vy~wG~n~----g~~~~~~~~~~p~~v~~~~~~~i~~V~~~g---~-~hs~aLt~~G~vy~wG~n~~~G 82 (254)
...+++|++|++|..=... +....+.+.. ..+++..+.+|..+.++. . ...+++|.+|.+.---.. .+-
T Consensus 549 d~LllfTs~Grv~~l~v~~iP~~~~~~~G~~i~--~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~-~~~ 625 (805)
T PRK05560 549 DTLLFFTNRGRVYRLKVYEIPEASRTARGRPIV--NLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLS-EFS 625 (805)
T ss_pred CeEEEEecCCeEEEEEhhhCcCCCcCCCCeEHH--HhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhH-Hhh
Confidence 3478889999999986442 1112222211 112334455565555433 1 257888999987766443 111
Q ss_pred ccccCCCCCCCCcEEecCCCCCceEEEEe--CCCeEEEEEcCCcEEEEcCCCC
Q 025335 83 QSYLTSGKHGETPEPFPLPTEASVVKAAA--GWAHCVSVTEAGEVYTWGWREC 133 (254)
Q Consensus 83 qLG~g~~~~~~~p~~v~~~~~~~i~~Ia~--G~~hs~aLt~~G~vy~wG~n~~ 133 (254)
.... .-...+.+..+..++.+.. ...+.+++|++|++|.+-..+-
T Consensus 626 ~~~r------~G~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eI 672 (805)
T PRK05560 626 NIRS------NGIIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDV 672 (805)
T ss_pred hccc------CCceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhc
Confidence 1000 0012222223444554433 3456899999999999855443
No 45
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=35.84 E-value=43 Score=19.98 Aligned_cols=17 Identities=24% Similarity=0.505 Sum_probs=12.0
Q ss_pred CeEEEEEcCCcEEEEcCC
Q 025335 114 AHCVSVTEAGEVYTWGWR 131 (254)
Q Consensus 114 ~hs~aLt~~G~vy~wG~n 131 (254)
.|+++ .-++++|+||=-
T Consensus 4 ~hs~~-~~~~kiyv~GG~ 20 (49)
T PF07646_consen 4 GHSAV-VLDGKIYVFGGY 20 (49)
T ss_pred ceEEE-EECCEEEEECCc
Confidence 35555 448999999843
No 46
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=35.56 E-value=3.1e+02 Score=24.08 Aligned_cols=15 Identities=20% Similarity=0.485 Sum_probs=12.0
Q ss_pred CeEEEEEcCCcEEEE
Q 025335 114 AHCVSVTEAGEVYTW 128 (254)
Q Consensus 114 ~hs~aLt~~G~vy~w 128 (254)
.+-++.+.+|+||+|
T Consensus 362 ~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 362 DGLLVQTRDGDLYAF 376 (377)
T ss_pred CEEEEEeCCceEEEe
Confidence 467778889999886
No 47
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=35.47 E-value=48 Score=16.73 Aligned_cols=14 Identities=7% Similarity=0.142 Sum_probs=10.5
Q ss_pred eEEEEEcCCcEEEE
Q 025335 115 HCVSVTEAGEVYTW 128 (254)
Q Consensus 115 hs~aLt~~G~vy~w 128 (254)
++++.+.+|++|.-
T Consensus 8 ~~i~~D~~G~lWig 21 (24)
T PF07494_consen 8 YSIYEDSDGNLWIG 21 (24)
T ss_dssp EEEEE-TTSCEEEE
T ss_pred EEEEEcCCcCEEEE
Confidence 57888999999864
No 48
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=33.75 E-value=3.1e+02 Score=23.52 Aligned_cols=104 Identities=19% Similarity=0.277 Sum_probs=55.1
Q ss_pred eEEEecCCcEEEccCCCCCCCCCCCcccceeeeecCCCCceEEEecCCCeEEEEeCCCcEEEEecCCCCCccccCCCCCC
Q 025335 13 KMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHG 92 (254)
Q Consensus 13 ~~~vt~~G~vy~wG~n~g~~~~~~~~~~p~~v~~~~~~~i~~V~~~g~~hs~aLt~~G~vy~wG~n~~~GqLG~g~~~~~ 92 (254)
.|--++++.|-.|-...+...+.... +.++... .|. ..++.+-+...+.|--|-.+ .+|-|= ..
T Consensus 158 iLSSadd~tVRLWD~rTgt~v~sL~~--~s~VtSl------Evs--~dG~ilTia~gssV~Fwdak-sf~~lK-----s~ 221 (334)
T KOG0278|consen 158 ILSSADDKTVRLWDHRTGTEVQSLEF--NSPVTSL------EVS--QDGRILTIAYGSSVKFWDAK-SFGLLK-----SY 221 (334)
T ss_pred EEeeccCCceEEEEeccCcEEEEEec--CCCCcce------eec--cCCCEEEEecCceeEEeccc-ccccee-----ec
Confidence 44447889999998665544433221 1222222 122 23455556666666666666 565552 22
Q ss_pred CCcEEecC------------------------CCCCceEEE---EeCCCeEEEEEcCCcEEEEcCCC
Q 025335 93 ETPEPFPL------------------------PTEASVVKA---AAGWAHCVSVTEAGEVYTWGWRE 132 (254)
Q Consensus 93 ~~p~~v~~------------------------~~~~~i~~I---a~G~~hs~aLt~~G~vy~wG~n~ 132 (254)
..|..|.. ..+..|..- .-|.=||+-.+-+|++|+-|+-+
T Consensus 222 k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSED 288 (334)
T KOG0278|consen 222 KMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSED 288 (334)
T ss_pred cCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCC
Confidence 22322211 111222221 12566888889999999999766
No 49
>PF08887 GAD-like: GAD-like domain; InterPro: IPR014983 This domain is functionally uncharacterised, but it appears to be distantly related to the GAD domain IPR004115 from INTERPRO.
Probab=33.30 E-value=41 Score=24.53 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.2
Q ss_pred CCCeEEEEEcCCcEEEEcCCCC
Q 025335 112 GWAHCVSVTEAGEVYTWGWREC 133 (254)
Q Consensus 112 G~~hs~aLt~~G~vy~wG~n~~ 133 (254)
-.+|.+|.|.-|+||.|+.+..
T Consensus 78 ~~~~~ia~tAFGdl~~w~e~~g 99 (109)
T PF08887_consen 78 DNYIPIARTAFGDLYVWGENTG 99 (109)
T ss_pred ceEEEEEEcccccEEEEEcCCc
Confidence 3679999999999999998764
No 50
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=32.10 E-value=5.5e+02 Score=25.99 Aligned_cols=67 Identities=21% Similarity=0.219 Sum_probs=40.2
Q ss_pred eEEE-EeCCCcEEEEec-CCCCCccccC-CCC-CCCCcEEecCCCCCceEEEEeCCCeEEEEEcCCcEEEE
Q 025335 62 FALA-TSESGKLITWGS-ADDEGQSYLT-SGK-HGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTW 128 (254)
Q Consensus 62 hs~a-Lt~~G~vy~wG~-n~~~GqLG~g-~~~-~~~~p~~v~~~~~~~i~~Ia~G~~hs~aLt~~G~vy~w 128 (254)
|.+| |++.|-+|+.=. .+..|++-+- +.. ....---..++....|+.|+|+....++.|..|.+-+|
T Consensus 479 y~lA~ls~~g~llAsp~s~sk~~sil~~~h~~w~s~seWtm~lP~~E~~~~V~~t~~~Vav~TS~~~lRvF 549 (933)
T KOG1274|consen 479 YELADLSEKGTLLASPESESKLGSILYRAHFSWDSHSEWTMILPLQESIEAVAATSGWVAVATSLGYLRVF 549 (933)
T ss_pred ceeeeccccceEEecccccCCcceEEEEcccCcccccceeeecCCCCceeEEEccCcEEEEEeccceEEEE
Confidence 4443 777788887621 1123333222 111 11111223445558899999999999999999987776
No 51
>PF07312 DUF1459: Protein of unknown function (DUF1459); InterPro: IPR009924 This family consists of several hypothetical Caenorhabditis elegans proteins of around 85 residues in length. The function of this family is unknown.
Probab=31.32 E-value=39 Score=23.04 Aligned_cols=11 Identities=18% Similarity=0.597 Sum_probs=9.0
Q ss_pred EEccCCCCCCC
Q 025335 23 YMWGYLPGTSP 33 (254)
Q Consensus 23 y~wG~n~g~~~ 33 (254)
|.||+|.++..
T Consensus 60 waWGSNKnk~~ 70 (84)
T PF07312_consen 60 WAWGSNKNKQA 70 (84)
T ss_pred eeeccCCCCCC
Confidence 99999987654
No 52
>PF13938 DUF4213: Domain of unknown function (DUF4213); PDB: 3NPG_A 3L5O_B.
Probab=30.83 E-value=76 Score=21.80 Aligned_cols=22 Identities=14% Similarity=0.137 Sum_probs=18.5
Q ss_pred CCceEEEEeCCCeEEEEEcCCc
Q 025335 103 EASVVKAAAGWAHCVSVTEAGE 124 (254)
Q Consensus 103 ~~~i~~Ia~G~~hs~aLt~~G~ 124 (254)
+.+|+++..|..+|++..++|.
T Consensus 11 ~~~V~~~~iG~~~t~V~~~~G~ 32 (87)
T PF13938_consen 11 DIRVEDVCIGLHWTAVELSDGG 32 (87)
T ss_dssp C-EEEEEEEBSSEEEEEETT-E
T ss_pred CCEEEEEEEcCCEEEEEeCCCc
Confidence 6789999999999999999983
No 53
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=30.49 E-value=1.2e+02 Score=27.92 Aligned_cols=68 Identities=21% Similarity=0.265 Sum_probs=0.0
Q ss_pred eEEEecCCcEEEccCCCCCCCCCCCcccceeeeecCCCCceEEEecCCCeEEEEeCCCcEEEEecCCCCCccccCCCCCC
Q 025335 13 KMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHG 92 (254)
Q Consensus 13 ~~~vt~~G~vy~wG~n~g~~~~~~~~~~p~~v~~~~~~~i~~V~~~g~~hs~aLt~~G~vy~wG~n~~~GqLG~g~~~~~ 92 (254)
.+++..+|+||.|-.+ ++.-+....+..-+ ++-+++++-+|..++.|++ .|-.-+=+.+..
T Consensus 359 l~~~~~~GeV~v~nl~-----------~~~~~~rf~D~G~v------~gts~~~S~ng~ylA~GS~--~GiVNIYd~~s~ 419 (514)
T KOG2055|consen 359 LLASGGTGEVYVWNLR-----------QNSCLHRFVDDGSV------HGTSLCISLNGSYLATGSD--SGIVNIYDGNSC 419 (514)
T ss_pred EEEEcCCceEEEEecC-----------CcceEEEEeecCcc------ceeeeeecCCCceEEeccC--cceEEEeccchh
Q ss_pred CC---cEEec
Q 025335 93 ET---PEPFP 99 (254)
Q Consensus 93 ~~---p~~v~ 99 (254)
.. |+|+.
T Consensus 420 ~~s~~PkPik 429 (514)
T KOG2055|consen 420 FASTNPKPIK 429 (514)
T ss_pred hccCCCCchh
No 54
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=29.73 E-value=3.6e+02 Score=23.09 Aligned_cols=58 Identities=14% Similarity=0.205 Sum_probs=33.8
Q ss_pred eEEEecCCcEEEccCCCCCCCCCCCcccceeeeecCCCCceEEEecCCC-eEEEEeCCCcEEEEecC
Q 025335 13 KMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCG-FALATSESGKLITWGSA 78 (254)
Q Consensus 13 ~~~vt~~G~vy~wG~n~g~~~~~~~~~~p~~v~~~~~~~i~~V~~~g~~-hs~aLt~~G~vy~wG~n 78 (254)
-+.-|.+|.|++|-..+...... +.|.+ +..+..+.....+ -.+|.++.|+.|.|-.-
T Consensus 139 Lis~dqsg~irvWDl~~~~c~~~---liPe~-----~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~ 197 (311)
T KOG0315|consen 139 LISGDQSGNIRVWDLGENSCTHE---LIPED-----DTSIQSLTVMPDGSMLAAANNKGNCYVWRLL 197 (311)
T ss_pred EEeecCCCcEEEEEccCCccccc---cCCCC-----CcceeeEEEcCCCcEEEEecCCccEEEEEcc
Confidence 56678899999998654221111 11111 1223333332233 67789999999999865
No 55
>KOG3885 consensus Fibroblast growth factor [Signal transduction mechanisms]
Probab=28.40 E-value=2.3e+02 Score=22.11 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=18.6
Q ss_pred CceEEEecCCCeEEEEeCCCcEEEE
Q 025335 51 SWKDVCGGGCGFALATSESGKLITW 75 (254)
Q Consensus 51 ~i~~V~~~g~~hs~aLt~~G~vy~w 75 (254)
.++.|..+-...-+|.+.+|+||+=
T Consensus 68 GvV~IkGV~s~~YL~Mn~~G~LygS 92 (155)
T KOG3885|consen 68 GVVAIKGVESELYLAMNKEGKLYAS 92 (155)
T ss_pred cEEEEEEeeceeEEEECCCCcEecC
Confidence 3555555545689999999999965
No 56
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=27.51 E-value=6.2e+02 Score=25.16 Aligned_cols=109 Identities=15% Similarity=0.071 Sum_probs=62.6
Q ss_pred CcceEEEecCCcEEEccCCCCCCCCCCCcccceeeeecCCCCceEEEec-CCCeEEEEeCCCcEEEEecCCCCCccccCC
Q 025335 10 ENEKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGG-GCGFALATSESGKLITWGSADDEGQSYLTS 88 (254)
Q Consensus 10 ~~~~~~vt~~G~vy~wG~n~g~~~~~~~~~~p~~v~~~~~~~i~~V~~~-g~~hs~aLt~~G~vy~wG~n~~~GqLG~g~ 88 (254)
+...+++|++|-|-.---.+ +.+.-+++..+..+..+... ...+.+++|++|++|.+-..+ -- .|.+
T Consensus 494 e~v~VilTk~G~IKr~~~~~---------~~~saikLKegD~L~~~~~~~t~d~LllfTs~Gr~yrf~v~e-IP-~GR~- 561 (735)
T TIGR01062 494 EPVTIILSKMGWVRSAKGHD---------IDLSTLKYKAGDSEKAIIEGKSNQKVVFIDSTGRSYALDPDN-LP-SARG- 561 (735)
T ss_pred cceEEEEecCCEEEeccccc---------cchhccCcCCCCeEEEEEEecCCCEEEEEECCCeEEEEEhHh-cC-cCcc-
Confidence 34467888888664322110 11122333334444444432 222689999999999998773 32 2221
Q ss_pred CCCCCCcE--EecCCCCCceEEEEeCCC--eEEEEEcCCcEEEEcCCCC
Q 025335 89 GKHGETPE--PFPLPTEASVVKAAAGWA--HCVSVTEAGEVYTWGWREC 133 (254)
Q Consensus 89 ~~~~~~p~--~v~~~~~~~i~~Ia~G~~--hs~aLt~~G~vy~wG~n~~ 133 (254)
...|. .+.+..+..|+.+.+... +-+++|+.|..+-.-.+++
T Consensus 562 ---aGgpV~~~L~L~~gE~Iv~~~~v~~~~~lLlaT~~GyGKrt~lse~ 607 (735)
T TIGR01062 562 ---QGEPLTGKLLLPIGATITNILMYSPNQLLLMASDAGYGFLCNFNDL 607 (735)
T ss_pred ---CCceeEeeecCCCCCEEEEEEEecCCcEEEEEEcCCcEEEEEhHhc
Confidence 12222 244566788888887654 4678888997776655544
No 57
>COG3557 Uncharacterized domain/protein associated with RNAses G and E [Translation, ribosomal structure and biogenesis]
Probab=26.64 E-value=1.3e+02 Score=23.67 Aligned_cols=37 Identities=22% Similarity=0.397 Sum_probs=28.8
Q ss_pred EEEecCCeEEEEecCCcc--cccCCeeEEeeecceeeeee
Q 025335 216 KVAAGGRHTLILSGKSLE--SAEPKRLIFSGISSWSHYIV 253 (254)
Q Consensus 216 ~Ia~G~~hs~~Lt~~G~v--~~~~~~~~~~~~~~~~~~~~ 253 (254)
-|-.|..||++..++|+- ..||-- -||.-..|.-.|.
T Consensus 37 ~iIg~NdhtlV~esdgr~w~TrEpai-~yF~k~~wFNvi~ 75 (177)
T COG3557 37 LIIGGNDHTLVTESDGRTWVTREPAI-WYFHKNEWFNVIA 75 (177)
T ss_pred EEEeccCcEEEEecCCccceecCCEE-EEEecccceeeEE
Confidence 457789999999999974 446654 6777888988775
No 58
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=26.47 E-value=2.7e+02 Score=26.33 Aligned_cols=12 Identities=17% Similarity=0.216 Sum_probs=9.8
Q ss_pred ecCCcEEEccCC
Q 025335 17 CKETVVYMWGYL 28 (254)
Q Consensus 17 t~~G~vy~wG~n 28 (254)
+..|+|-.||.-
T Consensus 78 D~sG~vRIWdtt 89 (603)
T KOG0318|consen 78 DVSGKVRIWDTT 89 (603)
T ss_pred CCcCcEEEEecc
Confidence 578999999964
No 59
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=25.66 E-value=1.1e+02 Score=30.80 Aligned_cols=64 Identities=11% Similarity=0.140 Sum_probs=43.5
Q ss_pred eEEEecCCcEEEccCCCCCCCCCCCcccc--eeeeecCCCCceEEEecCCCeEEEEeCCCcEEEEecC
Q 025335 13 KMEECKETVVYMWGYLPGTSPEKSPILSP--IPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSA 78 (254)
Q Consensus 13 ~~~vt~~G~vy~wG~n~g~~~~~~~~~~p--~~v~~~~~~~i~~V~~~g~~hs~aLt~~G~vy~wG~n 78 (254)
-+-+|.|.+++.|-.|++..-+....+.. ..+++..+...+-|..+ .|.+++...-++|..|--
T Consensus 95 rcWiT~dnkLiLWnynn~neyq~idd~shtIlkVkLvrPkantFvs~i--~hlL~vAT~~e~~ilgvs 160 (1263)
T COG5308 95 RCWITNDNKLILWNYNNSNEYQEIDDFSHTILKVKLVRPKANTFVSRI--SHLLFVATEKEVMILGVS 160 (1263)
T ss_pred ceEEEcCCEEEEEecCCCcchhhhhhhhhheeEEEEeccCCcccHHhh--hhhhhhhhhheeeEEEEE
Confidence 46689999999999987655444333333 33444444445555543 499999999999999864
No 60
>PLN02153 epithiospecifier protein
Probab=25.63 E-value=4.4e+02 Score=22.82 Aligned_cols=17 Identities=12% Similarity=0.161 Sum_probs=12.1
Q ss_pred CeEEEEEcCCcEEEEcCC
Q 025335 114 AHCVSVTEAGEVYTWGWR 131 (254)
Q Consensus 114 ~hs~aLt~~G~vy~wG~n 131 (254)
.|++++. +++||++|=.
T Consensus 244 ~~~~~~~-~~~iyv~GG~ 260 (341)
T PLN02153 244 VFAHAVV-GKYIIIFGGE 260 (341)
T ss_pred eeeeEEE-CCEEEEECcc
Confidence 4665555 6899999854
No 61
>PF06204 CBM_X: Putative carbohydrate binding domain ; InterPro: IPR009342 This domain is conserved in enzymes that have carbohydrates as substrate, and may be a carbohydrate-binding domain.; PDB: 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A 3QG0_B 3AFJ_A 3ACS_A 1V7V_A 1V7X_A ....
Probab=25.55 E-value=1.8e+02 Score=19.01 Aligned_cols=29 Identities=24% Similarity=0.318 Sum_probs=19.7
Q ss_pred ceEEEEeCCCeEEEEEcCCcEEEEcCCCC
Q 025335 105 SVVKAAAGWAHCVSVTEAGEVYTWGWREC 133 (254)
Q Consensus 105 ~i~~Ia~G~~hs~aLt~~G~vy~wG~n~~ 133 (254)
+-+.+-+-..++++|++.|.-|+|-.+..
T Consensus 26 P~~n~LsNg~y~~mvt~~G~GySw~~~~~ 54 (66)
T PF06204_consen 26 PWVNVLSNGSYGVMVTNSGSGYSWAKNSR 54 (66)
T ss_dssp --EEEE-SSSEEEEEETTSBEEEEES-TT
T ss_pred CEEEEeeCCcEEEEEcCCCceeecccccC
Confidence 44555555678889999999999976654
No 62
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=25.38 E-value=51 Score=20.50 Aligned_cols=16 Identities=6% Similarity=-0.016 Sum_probs=12.7
Q ss_pred CCeEEEEecCCccccc
Q 025335 221 GRHTLILSGKSLESAE 236 (254)
Q Consensus 221 ~~hs~~Lt~~G~v~~~ 236 (254)
.+++++||++|+...-
T Consensus 5 ~~~aiVlT~dGeF~~i 20 (56)
T PF12791_consen 5 KKYAIVLTPDGEFIKI 20 (56)
T ss_pred CCEEEEEcCCCcEEEE
Confidence 4789999999976653
No 63
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=24.47 E-value=7e+02 Score=24.71 Aligned_cols=26 Identities=12% Similarity=0.157 Sum_probs=19.0
Q ss_pred CCceEEEE-----eCCCeEEEEEcCCcEEEE
Q 025335 103 EASVVKAA-----AGWAHCVSVTEAGEVYTW 128 (254)
Q Consensus 103 ~~~i~~Ia-----~G~~hs~aLt~~G~vy~w 128 (254)
...|.+|. .-..|-++||+|+.+-.+
T Consensus 146 ~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y 176 (717)
T PF10168_consen 146 SLEIKQVRWHPWSESDSHLVVLTSDNTLRLY 176 (717)
T ss_pred CceEEEEEEcCCCCCCCeEEEEecCCEEEEE
Confidence 45677774 347899999999986544
No 64
>smart00442 FGF Acidic and basic fibroblast growth factor family. Mitogens that stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family play essential roles in patterning and differentiation during vertebrate embryogenesis, and have neurotrophic activities.
Probab=24.26 E-value=3e+02 Score=20.40 Aligned_cols=22 Identities=23% Similarity=0.173 Sum_probs=15.6
Q ss_pred EEEecCCCeEEEEeCCCcEEEE
Q 025335 54 DVCGGGCGFALATSESGKLITW 75 (254)
Q Consensus 54 ~V~~~g~~hs~aLt~~G~vy~w 75 (254)
.|..+....-+++++.|+||+-
T Consensus 47 ~ik~~~s~~YLCmn~~G~ly~s 68 (126)
T smart00442 47 AIKGVASCRYLCMNKCGKLYGS 68 (126)
T ss_pred EEEEcccceEEEECCCCCEEEc
Confidence 3444334578899999999973
No 65
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=24.24 E-value=5.8e+02 Score=25.85 Aligned_cols=100 Identities=16% Similarity=0.034 Sum_probs=57.8
Q ss_pred eEEEecCCcEEEccCCC---CCCCCCCCcc----cceeeeecCCCCceEEEecCCCeEEEEeCCCcEEEEecCCCCCccc
Q 025335 13 KMEECKETVVYMWGYLP---GTSPEKSPIL----SPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSY 85 (254)
Q Consensus 13 ~~~vt~~G~vy~wG~n~---g~~~~~~~~~----~p~~v~~~~~~~i~~V~~~g~~hs~aLt~~G~vy~wG~n~~~GqLG 85 (254)
+..|...|.+|+.=... +......+.. ...-..++....++.|++ +.+-.++.|+.|.+-.|-.+ |
T Consensus 481 lA~ls~~g~llAsp~s~sk~~sil~~~h~~w~s~seWtm~lP~~E~~~~V~~-t~~~Vav~TS~~~lRvFt~g---G--- 553 (933)
T KOG1274|consen 481 LADLSEKGTLLASPESESKLGSILYRAHFSWDSHSEWTMILPLQESIEAVAA-TSGWVAVATSLGYLRVFTIG---G--- 553 (933)
T ss_pred eeeccccceEEecccccCCcceEEEEcccCcccccceeeecCCCCceeEEEc-cCcEEEEEeccceEEEEEec---c---
Confidence 56677888888773221 2222222211 333344455578888998 77899999999988777544 1
Q ss_pred cCCCCCCCCcEEecCCCCCceEEEEeCCCeEEEEEcCCcEEEEcCCCCC
Q 025335 86 LTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECV 134 (254)
Q Consensus 86 ~g~~~~~~~p~~v~~~~~~~i~~Ia~G~~hs~aLt~~G~vy~wG~n~~G 134 (254)
.|..|..+ ..+|+.++|=.+|-++ ||..|...++
T Consensus 554 --------vq~~I~t~-~gP~vtaag~~d~L~i------v~h~s~~~~~ 587 (933)
T KOG1274|consen 554 --------VQREIFTL-PGPVVTAAGFEDSLAI------VYHSSKRFYG 587 (933)
T ss_pred --------eeeeEeec-ccceEEeecccceEEE------EEecCCCCCc
Confidence 13334333 3467777754444444 4555555554
No 66
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=24.00 E-value=7.3e+02 Score=24.72 Aligned_cols=120 Identities=17% Similarity=0.102 Sum_probs=63.5
Q ss_pred CCcceEEEecCCcEEEccCCCCCCCCCCCccccee--eeecCCCCceEEEecCCC-eEEEEeCCCcEEEEecCCCCCccc
Q 025335 9 EENEKMEECKETVVYMWGYLPGTSPEKSPILSPIP--ARLCGGDSWKDVCGGGCG-FALATSESGKLITWGSADDEGQSY 85 (254)
Q Consensus 9 ~~~~~~~vt~~G~vy~wG~n~g~~~~~~~~~~p~~--v~~~~~~~i~~V~~~g~~-hs~aLt~~G~vy~wG~n~~~GqLG 85 (254)
.....+++|++|++|.+-..+ ++.....-.|.. +.+..+..+..+..+... +-+++|+.|..+-.-..+ +-...
T Consensus 535 t~d~LllfTs~Gr~yrf~v~e--IP~GR~aGgpV~~~L~L~~gE~Iv~~~~v~~~~~lLlaT~~GyGKrt~lse-~~~~~ 611 (735)
T TIGR01062 535 SNQKVVFIDSTGRSYALDPDN--LPSARGQGEPLTGKLLLPIGATITNILMYSPNQLLLMASDAGYGFLCNFND-LIARN 611 (735)
T ss_pred CCCEEEEEECCCeEEEEEhHh--cCcCccCCceeEeeecCCCCCEEEEEEEecCCcEEEEEEcCCcEEEEEhHh-ccccC
Confidence 344589999999999997543 111111112222 223455666666654333 578888888777665442 11110
Q ss_pred cCCCCCCCCcEEecCCCCCceEE--EEeCC-CeEEEEEcCCcEEEEcCCCCCCCC
Q 025335 86 LTSGKHGETPEPFPLPTEASVVK--AAAGW-AHCVSVTEAGEVYTWGWRECVPSA 137 (254)
Q Consensus 86 ~g~~~~~~~p~~v~~~~~~~i~~--Ia~G~-~hs~aLt~~G~vy~wG~n~~GQLG 137 (254)
.+ .. ..+.+..+..++. ...+. ++.+++|++|++..+-.++--++|
T Consensus 612 Ra----GK--gvi~Lk~~d~lv~v~~v~~~dd~V~liT~~GrlLrf~v~EIp~~g 660 (735)
T TIGR01062 612 KA----GK--ALINLPENASVIAPLPVNGDSDMIAAITEAGRMLVFPIDDLPELS 660 (735)
T ss_pred cC----Ce--EEEEeCCCCEEEEEEEEcCCCCEEEEEeCCCcEEEEEHHHCCccC
Confidence 00 00 0011111222322 12233 357789999999999777665444
No 67
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=23.31 E-value=7.6e+02 Score=24.68 Aligned_cols=67 Identities=16% Similarity=0.163 Sum_probs=35.2
Q ss_pred eEEEEeCCCcEEEEecCCCCCccccCCCCCCCCcEEecCCCCCceEEEEeCCCeEEEEE--cCCcEEEEcC
Q 025335 62 FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVT--EAGEVYTWGW 130 (254)
Q Consensus 62 hs~aLt~~G~vy~wG~n~~~GqLG~g~~~~~~~p~~v~~~~~~~i~~Ia~G~~hs~aLt--~~G~vy~wG~ 130 (254)
-+++++..|.=.++|+. ..|||+.=.-.....--+.... -..|..++-..+-.++.| +||+|-.|-.
T Consensus 311 ~t~~~N~tGDWiA~g~~-klgQLlVweWqsEsYVlKQQgH-~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~ 379 (893)
T KOG0291|consen 311 LTVSFNSTGDWIAFGCS-KLGQLLVWEWQSESYVLKQQGH-SDRITSLAYSPDGQLIATGAEDGKVKVWNT 379 (893)
T ss_pred eEEEecccCCEEEEcCC-ccceEEEEEeeccceeeecccc-ccceeeEEECCCCcEEEeccCCCcEEEEec
Confidence 46677778888888988 6888875322111110001100 124555555555333333 5677777743
No 68
>PF13186 SPASM: Iron-sulfur cluster-binding domain
Probab=23.07 E-value=67 Score=19.91 Aligned_cols=14 Identities=14% Similarity=0.028 Sum_probs=12.8
Q ss_pred ceEEEecCCcEEEc
Q 025335 12 EKMEECKETVVYMW 25 (254)
Q Consensus 12 ~~~~vt~~G~vy~w 25 (254)
..++|+.||+||.+
T Consensus 6 ~~~~I~~dG~v~pC 19 (64)
T PF13186_consen 6 NSLYIDPDGDVYPC 19 (64)
T ss_pred eEEEEeeCccEEeC
Confidence 47999999999999
No 69
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=22.76 E-value=1.1e+02 Score=17.68 Aligned_cols=15 Identities=27% Similarity=0.587 Sum_probs=10.7
Q ss_pred CeEEEEEcCCcEEEEc
Q 025335 114 AHCVSVTEAGEVYTWG 129 (254)
Q Consensus 114 ~hs~aLt~~G~vy~wG 129 (254)
.|++ ..-+++||+.|
T Consensus 4 ~~~~-~~~~~~iyv~G 18 (47)
T PF01344_consen 4 GHAA-VVVGNKIYVIG 18 (47)
T ss_dssp SEEE-EEETTEEEEEE
T ss_pred cCEE-EEECCEEEEEe
Confidence 3444 44489999998
No 70
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=22.66 E-value=3.1e+02 Score=25.25 Aligned_cols=68 Identities=18% Similarity=0.220 Sum_probs=44.5
Q ss_pred eEEEEeCCCcEEEEecCCCCCccccCCCCCCCCcEEecCCCCCceEEEEeCCC--eEEEEEcCCcEEEEcCCC
Q 025335 62 FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWA--HCVSVTEAGEVYTWGWRE 132 (254)
Q Consensus 62 hs~aLt~~G~vy~wG~n~~~GqLG~g~~~~~~~p~~v~~~~~~~i~~Ia~G~~--hs~aLt~~G~vy~wG~n~ 132 (254)
+++++--||.+|+-|.- .|++-+=+.+....-..++. ...+|+.|+-+.+ +-+.-++|+.|..|-...
T Consensus 351 ts~~fHpDgLifgtgt~--d~~vkiwdlks~~~~a~Fpg-ht~~vk~i~FsENGY~Lat~add~~V~lwDLRK 420 (506)
T KOG0289|consen 351 TSAAFHPDGLIFGTGTP--DGVVKIWDLKSQTNVAKFPG-HTGPVKAISFSENGYWLATAADDGSVKLWDLRK 420 (506)
T ss_pred EEeeEcCCceEEeccCC--CceEEEEEcCCccccccCCC-CCCceeEEEeccCceEEEEEecCCeEEEEEehh
Confidence 88899999999999987 47775543333332222333 2457888887654 444445688899996544
No 71
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=22.45 E-value=3.1e+02 Score=19.91 Aligned_cols=59 Identities=12% Similarity=-0.041 Sum_probs=32.9
Q ss_pred cceEEEecCCcEEEccCCCCCCCCCCCcccceeeeecCCCCceEEEecCCCeEEEEeCCCcEEEEec
Q 025335 11 NEKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGS 77 (254)
Q Consensus 11 ~~~~~vt~~G~vy~wG~n~g~~~~~~~~~~p~~v~~~~~~~i~~V~~~g~~hs~aLt~~G~vy~wG~ 77 (254)
+..|.+..||.|-.=+.. ......+.-.++ .. ..+.|-..-...-+++++.|+||+=..
T Consensus 10 ~~~L~i~~~g~V~gt~~~----~~~~s~~~i~~~---~~-g~V~i~~~~s~~YLcmn~~G~ly~~~~ 68 (122)
T PF00167_consen 10 GYFLQINPNGTVDGTGDD----NSPYSVFEIHSV---GF-GVVRIRGVKSCRYLCMNKCGRLYGSKN 68 (122)
T ss_dssp SEEEEEETTSBEEEESST----TSTTGEEEEEEE---ET-TEEEEEETTTTEEEEEBTTSBEEEESS
T ss_pred CeEEEECCCCeEeCCCCc----CcceeEEEEEec---cc-eEEEEEEecceEEEEECCCCeEccccc
Confidence 557888999988655422 111111222222 11 233444433457799999999998543
No 72
>PF06462 Hyd_WA: Propeller; InterPro: IPR006624 Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) which encode 217 and 353 amino acids, respectively. Tectonin I is homologous to the C-terminal two-thirds of tectonin II. Both proteins contain six tandem repeats that are each 33-37 amino acids in length and define a new consensus sequence. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis [].
Probab=22.32 E-value=95 Score=17.01 Aligned_cols=13 Identities=15% Similarity=0.182 Sum_probs=8.5
Q ss_pred eEEEEeCCCcEEE
Q 025335 62 FALATSESGKLIT 74 (254)
Q Consensus 62 hs~aLt~~G~vy~ 74 (254)
+..|++.+|+||.
T Consensus 2 ~VWav~~~G~v~~ 14 (32)
T PF06462_consen 2 QVWAVTSDGSVYF 14 (32)
T ss_pred eEEEEcCCCCEEE
Confidence 3456777777763
No 73
>PLN02193 nitrile-specifier protein
Probab=22.01 E-value=6.3e+02 Score=23.28 Aligned_cols=17 Identities=24% Similarity=0.409 Sum_probs=12.6
Q ss_pred CCeEEEEEcCCcEEEEcC
Q 025335 113 WAHCVSVTEAGEVYTWGW 130 (254)
Q Consensus 113 ~~hs~aLt~~G~vy~wG~ 130 (254)
..|++++. ++++|++|=
T Consensus 270 ~~h~~~~~-~~~iYv~GG 286 (470)
T PLN02193 270 SFHSMAAD-EENVYVFGG 286 (470)
T ss_pred cceEEEEE-CCEEEEECC
Confidence 34777665 689999984
No 74
>PHA02102 hypothetical protein
Probab=21.56 E-value=83 Score=20.44 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=9.7
Q ss_pred CCcceEEEecCCcEEE
Q 025335 9 EENEKMEECKETVVYM 24 (254)
Q Consensus 9 ~~~~~~~vt~~G~vy~ 24 (254)
|.+..+.+.+||.||.
T Consensus 53 Eg~eaF~~~SDGsvWm 68 (72)
T PHA02102 53 EGGEAFVARSDGSVWM 68 (72)
T ss_pred cccceeeeccCCcEec
Confidence 3444566677777764
No 75
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=21.20 E-value=2e+02 Score=24.13 Aligned_cols=64 Identities=22% Similarity=0.221 Sum_probs=0.0
Q ss_pred EEEEeCCCcEEEEecCCCCCccccCCCCCCCCcEEecCCCCC-----------ceEEEEeCCCeEEEEEcCCcEEEEcCC
Q 025335 63 ALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEA-----------SVVKAAAGWAHCVSVTEAGEVYTWGWR 131 (254)
Q Consensus 63 s~aLt~~G~vy~wG~n~~~GqLG~g~~~~~~~p~~v~~~~~~-----------~i~~Ia~G~~hs~aLt~~G~vy~wG~n 131 (254)
+++.--.|.+|+-|+|. .+......|..+..-... +-.+-.-|.-.+.+.+..|++.+-|+|
T Consensus 37 av~fhp~g~lyavgsns-------kt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsn 109 (350)
T KOG0641|consen 37 AVAFHPAGGLYAVGSNS-------KTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSN 109 (350)
T ss_pred eEEecCCCceEEeccCC-------ceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCC
Q ss_pred CC
Q 025335 132 EC 133 (254)
Q Consensus 132 ~~ 133 (254)
+.
T Consensus 110 dk 111 (350)
T KOG0641|consen 110 DK 111 (350)
T ss_pred Cc
No 76
>CHL00121 rpl27 ribosomal protein L27; Reviewed
Probab=21.19 E-value=51 Score=22.91 Aligned_cols=22 Identities=18% Similarity=0.119 Sum_probs=19.0
Q ss_pred EEEecCCeEEEEecCCcccccC
Q 025335 216 KVAAGGRHTLILSGKSLESAEP 237 (254)
Q Consensus 216 ~Ia~G~~hs~~Lt~~G~v~~~~ 237 (254)
.|..|.+||++-..+|.|..+.
T Consensus 50 NVg~GrD~TlfAl~~G~V~f~~ 71 (86)
T CHL00121 50 NVGCGKDFTLYALIDGFVKFKK 71 (86)
T ss_pred cccccCCceEEEccceEEEEEE
Confidence 6789999999999999887753
No 77
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=20.58 E-value=8.5e+02 Score=24.24 Aligned_cols=83 Identities=13% Similarity=0.037 Sum_probs=46.8
Q ss_pred cCCCCceEEEec-CCCeEEEEeCCCcEEEEecCCCCCccccCCCCCCCCcEEecCCCCCceEEEEeCC--CeEEEEEcCC
Q 025335 47 CGGDSWKDVCGG-GCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGW--AHCVSVTEAG 123 (254)
Q Consensus 47 ~~~~~i~~V~~~-g~~hs~aLt~~G~vy~wG~n~~~GqLG~g~~~~~~~p~~v~~~~~~~i~~Ia~G~--~hs~aLt~~G 123 (254)
..+..+..+... ...+-+++|+.|++|.+-.. ..-+ |...+ ...-..+.+..+..|+.+.+-. .+-+++|++|
T Consensus 535 ke~D~Lv~v~~~~t~d~LllfT~~Grv~r~~~~-eIP~-gra~G--v~i~~~i~L~~gE~Iv~~~~~~~~~~lllvT~~G 610 (742)
T PRK05561 535 KEGDSLLFAFEARTTDKLLLFTSTGRVYSLPVH-ELPS-ARGDG--EPLTGLVDLAPGEEIVHVLAFDPDQKLLLASSAG 610 (742)
T ss_pred CCCCeEEEEEEecCCCeEEEEECCCcEEEeEHH-hCCC-cCCCC--cChhhhcCCCCCceEEEEEEEcCCcEEEEEECCC
Confidence 334445444432 22368899999999999776 3333 22101 1111334555667777776532 2467788888
Q ss_pred cEEEEcCCCC
Q 025335 124 EVYTWGWREC 133 (254)
Q Consensus 124 ~vy~wG~n~~ 133 (254)
.+.-.-.+++
T Consensus 611 ~~KRt~lse~ 620 (742)
T PRK05561 611 YGFVVTLEDL 620 (742)
T ss_pred cEEEEEhhhc
Confidence 6665544443
Done!